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At least 163 records · Page 9Linked to original sources
USGS2014

Carbon flow from volcanic CO 2 into soil microbial communities of a wetland mofette

Effects of extremely high carbon dioxide (CO 2 ) concentrations on soil microbial communities and associated processes are largely unknown. We studied a wetland area affected by spots of subcrustal CO 2 degassing (mofettes) with focus on anaerobic autotrophic methanogenesis and acetogenesis because the pore gas phase was largely hypoxic. Compared with a reference soil, the mofette was more acidic (ΔpH ~0.8), strongly enriched in organic carbon (up to 10 times), and exhibited lower prokaryotic diversity. It was dominated by methanogens and subdivision 1Acidobacteria, which likely thrived under stable hypoxia and acidic pH. Anoxic incubations revealed enhanced formation of acetate and methane (CH 4 ) from hydrogen (H 2 ) and CO 2 consistent with elevated CH 4 and acetate levels in the mofette soil. 13 CO 2 mofette soil incubations showed high label incorporations with ~512   ng 13 C   g   (dry weight (dw)) soil −1   d −1 into the bulk soil and up to 10.7   ng 13 C   g   (dw) soil −1   d −1 into almost all analyzed bacterial lipids. Incorporation of CO 2 -derived carbon into archaeal lipids was much lower and restricted to the first 10   cm of the soil. DNA-SIP analysis revealed that acidophilic methanogens affiliated withMethanoregulaceae and hitherto unknown acetogens appeared to be involved in the chemolithoautotrophic utilization of 13 CO 2 . Subdivision 1 Acidobacteriaceae assimilated 13 CO 2 likely via anaplerotic reactions because Acidobacteriaceae are not known to harbor enzymatic pathways for autotrophic CO 2 assimilation. We conclude that CO 2 -induced geochemical changes promoted anaerobic and acidophilic organisms and altered carbon turnover in affected soils.

The ISME Journal↗
USGS2017

Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments

Despite accounting for the majority of sedimentary methane, the physiology and relative abundance of subsurface methanogens remain poorly understood. We combined intact polar lipid and metagenome techniques to better constrain the presence and functions of methanogens within the highly reducing, organic-rich sediments of Antarctica’s Adélie Basin. The assembly of metagenomic sequence data identified phylogenic and functional marker genes of methanogens and generated the first Methanosaeta sp. genome from a deep subsurface sedimentary environment. Based on structural and isotopic measurements, glycerol dialkyl glycerol tetraethers with diglycosyl phosphatidylglycerol head groups were classified as biomarkers for active methanogens. The stable carbon isotope (δ 13 C) values of these biomarkers and the Methanosaeta partial genome suggest that these organisms are acetoclastic methanogens and represent a relatively small (0.2%) but active population. Metagenomic and lipid analyses suggest that Thaumarchaeota and heterotrophic bacteria co-exist with Methanosaeta and together contribute to increasing concentrations and δ 13 C values of dissolved inorganic carbon with depth. This study presents the first functional insights of deep subsurface Methanosaeta organisms and highlights their role in methane production and overall carbon cycling within sedimentary environments.

ISME Journal↗
USGS2020

Differences in macronutrient content of common aquatic macroinvertebrates available as prey for young-of-the-year Scaphirhynchus sturgeons in the lower Missouri River

Nutrient availability in prey items can have important consequences for the growth, reproduction, survival, and recruitment into adulthood of juvenile fish. For young of the year sturgeon, which are highly dependent on macroinvertebrates as prey, knowing the nutritional content across various prey items within their habitats can help managers during habitat restoration. The objective of this study was to test for differences in the macronutrient composition of major invertebrate groups commonly consumed by young of the year sturgeon in the lower Missouri River in the summer, when sturgeon habitat assessments occur. Potential prey vary considerably in size. In addition, there were significant differences in the concentrations of nutrients. The lowest concentration of lipid was found in Odonata (2.36 ± 1.83 mg 100 mg −1 ; mean ± pooled variance standard error) and the highest was in Diptera (14.49 ± 3.30 mg 100 mg −1 ). The lowest concentration of protein was found in Ephemeroptera (58.98 ± 1.90 mg 100 mg −1 ) and the highest concentration was in Trichoptera (70.07 ± 3.26 mg 100 mg −1 ). Some spatial differences were found in energy derived from protein in Ephemeroptera in the lower Missouri River, but not in energy derived from lipid. Our findings provide useful information that can contribute to adaptive management efforts for sturgeons in the lower Missouri River.

Iowa, Kansas, Missouri, Nebraska, South Dakota↗
USGS2011

Impacts of changing food webs in Lake Ontario: Implications of dietary fatty acids on growth of alewives

Declines in the abundance and condition of Great Lakes Alewives have been reported periodically during the last two decades, and the reasons for these declines remain unclear. To better understand how food web changes may influence Alewife growth and Wisconsin growth model predictions, we fed Alewives isocaloric diets high in omega-6 fatty acids (corn oil) or high in omega-3 fatty acids (fish oil). Alewives were fed the experimental diets at either 1% (“low ration”) or 3% (“high ration”) of their wet body weight per day. After six weeks, Alewives maintained on the high ration diets were significantly larger than those fed the low ration diets. Moreover, Alewives given the high ration fish oil diet were significantly larger than those maintained on the high ration corn oil diet after six weeks of growth. Body lipid, energy density and total body energy of Alewives on the high ration diets were significantly higher than those fed the low ration diets, and total body energy was significantly higher in Alewives given the high ration fish oil diet compared to those on the high ration corn oil diet. The current Wisconsin bioenergetics model underestimated growth and overestimated food consumption by Alewives in our study. Alewife thiaminase activity was similar among treatment groups. Overall, our results suggest that future food web changes in Lake Ontario, particularly if they involve decreases in the abundance of lipid rich prey items such as Mysis , may reduce Alewife growth rates and total body energy due to reductions in the availability of dietary omega-3 fatty acids.

Aquatic Ecosystem Health & Management↗
USGS2010

Evidence of weak contaminant-related oxidative stress in glaucous gulls (Larus hyperboreus) from the Canadian arctic

Environmental contaminants are transported over great distances to Arctic ecosystems, where they can accumulate in wildlife. Whether contaminant concentrations in wildlife are sufficient to produce adverse effects remains poorly understood. Exposure to contaminants elevates oxidative stress with possible fitness consequences. The glaucous gull ( Larus hyperboreus ), an Arctic top predator, was used as a bioindicator for investigating relationships between contaminant levels (organochlorines and polychlorinated biphenyls [OC/PCB], mercury [Hg], and selenium [Se]) and measures of oxidative stress (glutathione [GSH] metabolism and lipid peroxidation) in Canadian Arctic ecosystems. Contaminant levels were low and associations between contaminant exposure and oxidative stress were weak. Nevertheless, glutathione peroxidase activity rose with increasing hepatic Se concentrations, levels of thiols declined as Hg and OC/PCB levels rose, and at one of the two study sites levels of lipid peroxidation were elevated with increasing levels of hepatic Hg. These results suggest the possibility of a deleterious effect of exposure to contaminants on gull physiology even at low contaminant exposures.

Arctic↗
USGS2014

Energy demands for maintenance, growth, pregnancy, and lactation of female Pacific walruses ( Odobenus rosmarus divergens )

Decreases in sea ice have altered habitat use and activity patterns of female Pacific walruses Odobenus rosmarus divergens and could affect their energetic demands, reproductive success, and population status. However, a lack of physiological data from walruses has hampered efforts to develop the bioenergetics models required for fully understanding potential population-level impacts. We analyzed long-term longitudinal data sets of caloric consumption and body mass from nine female Pacific walruses housed at six aquaria using a hierarchical Bayesian approach to quantify relative energetic demands for maintenance, growth, pregnancy, and lactation. By examining body mass fluctuations in response to food consumption, the model explicitly uncoupled caloric demand from caloric intake. This is important for pinnipeds because they sequester and deplete large quantities of lipids throughout their lifetimes. Model outputs were scaled to account for activity levels typical of free-ranging Pacific walruses, averaging 83% of the time active in water and 17% of the time hauled-out resting. Estimated caloric requirements ranged from 26,900 kcal d−1 for 2-yr-olds to 93,370 kcal d−1 for simultaneously lactating and pregnant walruses. Daily consumption requirements were higher for pregnancy than lactation, reflecting energetic demands of increasing body size and lipid deposition during pregnancy. Although walruses forage during lactation, fat sequestered during pregnancy sustained 27% of caloric requirements during the first month of lactation, suggesting that walruses use a mixed strategy of capital and income breeding. Ultimately, this model will aid in our understanding of the energetic and population consequences of sea ice loss.

Physiological and Biochemical Zoology↗
USGS2000

Effects of water conditions on clutch size, egg volume, and hatchling mass of mallards and gadwalls in the Prairie Pothole Region

We examined the relationship between local water conditions (measured as the percent of total area of basins covered by water) and clutch size, egg volume, and hatchling mass of Mallards ( Anas platyrhynchos ) and Gadwalls ( A. strepera ) on four study sites in the Prairie Pothole Region of North Dakota and Minnesota, 1988–1994. We also examined the relationship between pond density and clutch size of Mallards and Gadwalls, using data collected at another North Dakota site, 1966–1981. For Mallards, we found no relationships to be significant. For Gadwalls, clutch size increased with percent basin area wet and pond density; hatchling mass marginally increased with percent basin area wet. These species differences may reflect, in part, that Mallards acquire lipid reserves used to produce early clutches before they reach the breeding grounds, whereas Gadwalls acquire lipid reserves locally; thus Gadwall clutches are more likely to be influenced by local food resources.

Minnesota, North Dakota↗
USGS1957

The nutrition of salmonid fishes. I. Chemical and histological studies of wild and domestic fish

Salmonids reared under artificial conditions show marked consistent differences in body composition in comparison with wild salmonids. Protein and mineral levels are lower and lipid values are higher in hatchery fish than in wild fish. As the period of artificial rearing is increased, these differences become more extreme. In hatchery fish, there is generally more microscopically visible fat in the liver and viscera than in these organs in wild fish although extremes are seen in both groups. In young hatchery fish and in wild fish, there is no correlation between fat deposition in the liver and in the pancreas, but in older hatchery fish, both of these organs are fatty and there is a simultaneous increase in total body lipid. In wild fish, ceroid deposition is greater, suggesting that the fatty acids are more highly unsaturated. There is little difference in disease incidence between the two groups, but parasitism is more pronounced in wild fish. The significant variables between wild and artificially produced fish appear to be limited to diet and environment. From the factors discussed above, diet alone is probably the most important single factor in producing the changes observed in body composition.

Alaska, British Columbia, California, Oregon, Wash↗
USGS2014

Habitat coupling in a large lake system: delivery of an energy subsidy by an offshore planktivore to the nearshore zone of Lake Superior

1. We hypothesised that the autumn spawning migration of Lake Superior cisco ( Coregonus artedi ) provides a resource subsidy, in the form of energy-rich cisco eggs, from the offshore pelagic to the nearshore benthic community over winter, when alternate prey production is likely to be low. 2. We tested this hypothesis using fish and macroinvertebrate surveys, fish population demographics, diet and stable isotope analyses, and bioenergetics modelling. 3. The benthic, congeneric lake whitefish ( C. clupeaformis ) was a clear beneficiary of cisco spawning. Cisco eggs represented 16% of lake whitefish annual consumption in terms of biomass, but 34% of energy (because of their high energy density: >10 kJ g wet mass −1 ). Stable isotope analyses were consistent with these results and suggest that other nearshore fish species may also rely on cisco eggs. 4. The lipid content of lake whitefish liver almost doubled from 26 to 49% between November and March, while that of muscle increased from 14 to 26% over the same period, suggesting lake whitefish were building, rather than depleting, lipid reserves during winter. 5. In the other Laurentian Great Lakes, where cisco populations remain very low and rehabilitation efforts are underway, the offshore-to-nearshore ecological link apparent in Lake Superior has been replaced by non-native planktivorous species. These non-native species spawn in spring have smaller eggs and shorter incubation periods. The rehabilitation of cisco in these systems should reinstate the onshore subsidy as it has in Lake Superior.

Wisconsin↗
USGS2013

Remote biopsy darting and marking of polar bears

Remote biopsy darting of polar bears ( Ursus maritimus ) is less invasive and time intensive than physical capture and is therefore useful when capture is challenging or unsafe. We worked with two manufacturers to develop a combination biopsy and marking dart for use on polar bears. We had an 80% success rate of collecting a tissue sample with a single biopsy dart and collected tissue samples from 143 polar bears on land, in water, and on sea ice. Dye marks ensured that 96% of the bears were not resampled during the same sampling period, and we recovered 96% of the darts fired. Biopsy heads with 5 mm diameters collected an average of 0.12 g of fur, tissue, and subcutaneous adipose tissue, while biopsy heads with 7 mm diameters collected an average of 0.32 g. Tissue samples were 99.3% successful (142 of 143 samples) in providing a genetic and sex identification of individuals. We had a 64% success rate collecting adipose tissue and we successfully examined fatty acid signatures in all adipose samples. Adipose lipid content values were lower compared to values from immobilized or harvested polar bears, indicating that our method was not suitable for quantifying adipose lipid content.

Marine Mammal Science↗
USGS2010

Influence of fish oils in production catfish feeds on selected disease resistance factors

Healthy channel calfish, Ictalurus punctatus (mean weight: 62.5g), were fed two production feeds that were identical except for the lipid portion, which was either catfish oil or menhaden oil. Fish were held at 18 or 28°C and fed the experimental feeds for four monlhs. A subsample of fish from each of the four treatments was then used to measure scrum antibody titers to Edwardsiella ictaluri , macrophage phagocytic index, phagocytic capacity, and production of intracellular and extracellular superoxide anion. The remaining fish were vaccinated with an E. icraluri bacterin, held for 18-24 days, and the assays were repeated. Fatty acid profiles of the diets indicated catfish oil had a higher percentage of monounsaturated fatty acids and slightly higher n-6 fatty acids. The menhaden oil diet had a higher percentage of the n-3 fatty acids. At 28°C, weight gain and feed conversion were slightly higher in calfish fed the feed containing menhaden oil. Weight gains and feed conversion were similar in fish maintained on the two feeds at 18°C. At the lower temperature, fish fed the diet containing menhaden oil appeared to have enhanced disease resistance factors, particularly phagocytic capacity. However, at 28°C, fish fed the diet containing catfish oil had enhanced phagocytic ability and intracellular superoxide production. Antibody titers were not sigmficantly (P > 0.05) affected by dietary lipid in this study. Vaccination amplified phagocytic ability in both diets at both temperatures and intensified the production of superoxide anion at 28°C.

Journal of Applied Aquaculture↗
USGS2025

The importance of method selection when estimating diet composition with quantitative fatty acid signature analysis

Quantitative fatty acid signature analysis (QFASA) is a common method of estimating the composition of prey species in the diets of consumers from polar and temperate ecosystems in which lipids are an important source of energy. A key characteristic of QFASA is that the large number of fatty acids that typically comprise lipids permits the dietary contributions of a correspondingly large number of prey types to be estimated. Several modifications to the original QFASA methods have been suggested in the literature and a significant extension of the original model published in 2017 allows simultaneous estimation of both diet proportions and calibration coefficients, which are metabolic constants in the model whose values must otherwise be estimated in independent feeding experiments. However, comparisons of diet estimates obtained using different estimation options have been limited. QFASA has been used to estimate the diet composition of several polar bear ( Ursus maritimus ) subpopulations, including the Southern Beaufort Sea (SBS) subpopulation. Prior QFASA estimates of SBS polar bear diet composition have most often been obtained using variations of the original QFASA model. We investigated the influence of variations in QFASA analytical methods on diet estimates by re-estimating the diet composition of polar bears from the Alaska portion of the SBS using three different methods and found that differences among the three sets of estimates were substantial. Our results illustrate how important the careful and deliberate selection of QFASA methods can be and we provide some guidance on techniques one might use to evaluate options.

PLoS ONE↗
USGS2008

Nutrient-reserve dynamics during egg production by female Greater Scaup (Aythya marila): Relationships with timing of reproduction

We studied nutrient-reserve dynamics of female Greater Scaup ( Aythya marila ) to quantify intraspecific strategies of nutrient acquisition for egg production, particularly in relation to the seasonal timing of reproduction (i.e., date of initiation of rapid follicle growth [RFG]). We collected female Greater Scaup on the Yukon-Kuskokwim Delta, Alaska, from arrival through clutch formation during the 2002 and 2003 breeding seasons, and we subsequently conducted standard proximate body-composition analysis. Endogenous lipid, protein, and mineral reserve levels did not decline during egg production. This result differs from most other nutrient-reserve studies of waterfowl, suggesting that female Greater Scaup rely on exogenous food resources, rather than endogenous nutrient reserves, to meet the energy and nutrient costs of clutch formation. Furthermore, endogenous nutrient-reserve levels did not decline with date of RFG initiation, which indicates that body condition at initiation of egg production was similar across the nesting season. We found evidence of nutrient-reserve thresholds for initiation of RFG, in that lipid, protein, and mineral reserves were smaller in nonreproductive than in reproductive females. In light of recent conservation concerns over declining North American scaup populations, our data contrast with nutrient-reserve dynamics described for Lesser Scaup ( A. affinis ).

The Auk↗
USGS1984

Determining fat digestibility in trout using a metabolic chamber

Fat digestibilities were determined in rainbow trout utilizing a metabolism chamber. Separate and quantitative fecal extracts were freeze dried and total lipids were extracted. Lipid digestibilities were comparable to those obtained by other methods (85‐91%). This method avoids problems due to leaching and the variable of accelerated passage through the gut encountered in other methods.

Progressive Fish-Culturist↗
USGS1996

First-year growth, recruitment, and maturity of walleyes in western Lake Erie

In some lakes, first-year growth of walleyes Stizostedion vitreum has been identified as an important factor governing recruitment of juveniles to the adult population. We developed a regression model for walleye recruitment in western Lake Erie by considering factors such as first-year growth, size of the spawning stock, the rate at which the lake warmed during the spring, and abundance of gizzard shad Dorosoma cepedianum . Gizzard shad abundance during the fall prior to spring walleye spawning explained over 40% of the variation in walleye recruitment. Gizzard shad are relatively high in lipids and are preferred prey for walleyes in Lake Erie. Therefore, the high degree of correlation between shad abundance and subsequent walleye recruitment supported the contention that mature females needed adequate lipid reserves during the winter to spawn the following spring. According to the regression analysis, spring warming rate and size of the parental stock also influenced walleye recruitment. Our regression model explained 92% of the variation in recruitment of age-2 fish into the Lake Erie walleye population from 1981 to 1993. The regression model is potentially valuable as a management tool because it could be used to forecast walleye recruitment to the fishery 2 years in advance. First-year growth was poorly correlated with recruitment, which may reflect the unusually low incidence of walleye cannibalism in western Lake Erie. In contrast, first-year growth was strongly linked to age at maturity.

Transactions of the American Fisheries Society↗
USGS2003

Characterizing aquatic health using salmonid mortality, physiology, and biomass estimates in streams with elevated concentrations of arsenic, cadmium, copper, lead, and zinc in the Boulder River Watershed, Montana

Abandoned tailings and mine adits are located throughout the Boulder River watershed in Montana. In this watershed, all species of fish are absent from some tributary reaches near mine sources; however, populations of brook trout Salvelinus fontitalis , rainbow trout Oncorhynchus mykiss , and cut-throat trout O. clarki are found further downstream. Multiple methods must be used to investigate the effects of metals released by past mining activity because the effects on aquatic life may range in severity, depending on the proximity of mine sources. Therefore, we used three types of effects—those on fish population levels (as measured by survival), those on biomass and density, and those at the level of the individual (as measured by increases in metallothionein, products of lipid peroxidation, and increases in concentrations of tissue metals)—to assess the aquatic health of the Boulder River watershed. Elevated concentrations of Cd, Cu, and Zn in the water column were associated with increased mortality of trout at sites located near mine waste sources. The hypertrophy (swelling), degeneration (dying), and necrosis of epithelial cells observed in the gills support our conclusion that the cause of death was related to metals in the water column. At a site further downstream (lower Cataract Creek), we observed impaired health of resident trout, as well as effects on biomass and density (measured as decreases in the kilograms of trout per hectare and the number per 300 m) and effects at the individual level, including increases in metallothionein, products of lipid peroxidation, and tissue concentrations of metals.

Transactions of the American Fisheries Society↗
USGS2000

Observations of health indices used to monitor a tailwater trout fishery

Health of the population of rainbow trout Oncorhynchus mykiss in the San Juan River tailwater was monitored to determine the effects of potential crowding from a reduced winter flow test at Navajo Dam, northwestern New Mexico. A systematic necropsy-based health profile provided a rapid method to detect gross changes in the health of the fish population. The health assessment index (HAI) was calculated to quantify the necropsy system and allow statistical comparisons of data sets. Other suborganismic indices were selected to encompass a range of responses specific to the stress of environmental alterations: physiology assessment using total protein and percent muscle lipids, an immune assessment using serum lysozyme, and a cellular-based evaluation using histology. The HAI values showed no clear trend in fish health, although significant differences occurred among fish samples during the test. Significant declines in condition factors and percent muscle lipids throughout the study suggested a seasonal effect. Total protein and lysozyme levels were variable, showing no discernible patterns. Most histological observations appeared to be incidental during the study. Although there was no clear demonstrable effect of altered flow on fish health, this study revealed the sensitivities of various health indicators, which may help in designing future studies and supporting or interpreting results using these approaches.

New Mexico↗
USGS2005

Thiamine content and thiaminase activity of ten freshwater stocks and one marine stock of alewives

Alewives Alosa pseudoharengus contain thiaminase activity that has been implicated in the development of a thiamine deficiency and associated effects in salmonines of the Great Lakes basin. Little is known about the factors that regulate thiaminase activity in alewives. We sampled alewives of uniform size (60-120 mm) during the summer of 1998 from the Gulf of St. Lawrence, seven of New York's Finger Lakes, one inland lake in Ontario, and two Great Lakes to assess possible relationships among thiamine, lipid content, fish abundance, lake morphometry, lake productivity, freshwater residency, and thiaminase activity. Thiaminase activity varied significantly among the 11 locations but was unrelated to thiamine concentration, which did not vary significantly. Alewife thiaminase activity in the Finger Lakes was negatively related to lipid content and positively related to measures of lake size (e.g., area, volume, and maximum depth). Activity in the one marine stock sampled in the Gulf of St. Lawrence was comparable to the highest values observed in the 10 freshwater stocks examined. Variation in alewife thiaminase activity has the potential to affect the extent of a thiamine deficiency associated with salmonines who feed on alewives as well as the viability of their offspring.

Big Rideau Lake, Finger Lakes, Gulf of St. Lawrenc↗