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At least 163 records · Page 9Linked to original sources
USGS1991

Heterosis and outbreeding depression: A multi-locus model and an application to salmon production

Both artificial propagation and efforts to preserve or augment natural populations sometimes involve, wittingly or unwittingly, the mixing of different gene pools. The advantages of such mixing vis-à-vis the alleviation of inbreeding depression are well known. Acknowledged, but less well understood, are the complications posed by outbreeding depression. This paper derives a simple model of outbreeding depression and demonstrates that it is reasonably possible to predict the generation-to-generation fitness course of hybrids derived from parents from different origins. Genetic difference, or distance between parental types, is defined by the drop in fitness experienced by one type reared at the site to which the other is locally adapted. For situations where decisions involving stock mixing must be made in the absence of complete information, a sensitivity analysis-based conflict resolution method (the Good-Bad-Ugly model) is described.

Fisheries Research↗
USGS1992

Acoustics as a tool for the assessment of Great Lakes forage fishes

Sharp reductions in forage fish populations in Lake Michigan have raised concerns about the continued ability of the forage stocks to support large populations of lake trout and other salmonid predators. There was a need for a more comprehensive and accurate estimate of forage fish abundance and distribution to evaluate these concerns. In response, cooperative diel surveys of the Lake Michigan forage species were conducted in late summer 1987 and spring 1989 with acoustics, midwater and bottom trawls.

Fisheries Research↗
USGS1996

Results of Bayesian methods depend on details of implementation: An example of estimating salmon escapement goals

Bayesian methods have been proposed to estimate optimal escapement goals, using both knowledge about physical determinants of salmon productivity and stock-recruitment data. The Bayesian approach has several advantages over many traditional methods for estimating stock productivity: it allows integration of information from diverse sources and provides a framework for decision-making that takes into account uncertainty reflected in the data. However, results can be critically dependent on details of implementation of this approach. For instance, unintended and unwarranted confidence about stock-recruitment relationships can arise if the range of relationships examined is too narrow, if too few discrete alternatives are considered, or if data are contradictory. This unfounded confidence can result in a suboptimal choice of a spawning escapement goal.

Fisheries Research↗
USGS1996

A passive integrated transponder (PIT) tag system for monitoring fishways

An application of passive integrated transponder (PIT) technology was used to monitor movements of adult American shad ( Alosa sapidissima ), blueback herring ( A. aestivalis ) and gizzard shad ( Dorosoma cepedianum ) in two experimental fishways. Tag reading efficiency was between 88–96%, detection ranges were 50–100 cm from orifices of 3100–9600 cm 2 , and read rates were 5–7 Hz. The system was limited by the amount of time that tags were exposed to the energize/detect zone, and by simultaneous presences of large numbers of tags within this zone.

Fisheries Research↗
USGS2017

Habitat suitability models for groundfish in the Gulf of Alaska

Identifying and quantifying the major ecosystem processes that regulate recruitment strength of commercially and ecologically important fish species is a central goal of fisheries management research. In the Gulf of Alaska (GOA) five groundfish species are of particular interest: sablefish ( Anoplopoma fimbria ), Pacific cod ( Gadus macrocephalus ), walleye pollock ( Gadus chalcogrammus ), arrowtooth flounder ( Atheresthes stomias ), and Pacific ocean perch ( Sebastes alutus ). Habitat suitability models (HSM) were developed for the demersal early juvenile stage to inform survival to recruitment for these species, using catch data and seafloor habitat metrics with presence-only models. Regional-scale maps were produced that predict the probability of suitable habitat available in the GOA from settlement through residency in nursery areas. For example, the HSM for sablefish (150–399 mm) described suitable habitat as bathymetrically low-lying areas with low rocky structure within 25–300 m depth. In contrast, the HSM for Pacific ocean perch (50–200 mm) described suitable habitat as bathymetry rises with rocky structure present on north-south facing slopes within 85–270 m depth. These habitat covariates are useful to refine population estimates for North Pacific groundfish species and to inform life stage-specific definitions of Essential Fish Habitat. This application of MaxEnt models should be applicable for species with low occurrence of spatial data in other marine ecosystems globally.

Alaska↗
USGS2005

Physiological response of wild rainbow trout to angling: Impact of angling duration, fish size, body condition, and temperature

This study evaluated the immediate physiological response of wild rainbow trout to catch-and-release angling in the Alagnak River, southwest Alaska. Information was recorded on individual rainbow trout (n = 415) captured by angling including landing time and the time required to remove hooks (angling duration), the time to anesthetize fish in clove oil and withdraw blood, fish length and weight, and water temperature at capture locations. Plasma cortisol, glucose, ions (sodium, potassium, chloride), and lactate were analyzed to determine the effects of angling duration, fish size, body condition, and temperature. Levels of plasma ions did not change significantly during the observed physiological response and levels of plasma glucose were sometimes influenced by length (2000, 2001), body condition (2001), or temperature (2001). Levels of plasma cortisol and lactate in extended capture fish (angling duration greater than 2 min) were significantly higher than levels in rapid capture fish (angling duration less than 2 min). Rapid capture fish were significantly smaller than extended capture fish, reflecting that fish size influenced landing and handling times. Fish size was related to cortisol and lactate in 2002, which corresponded to the year when larger fish were captured and there were longer landing times. Body condition (i.e., weight/length regression residuals index), was significantly related to lactate in 2000 and 2001. Water temperatures were higher in 2001 (mean temperature ± S.E., 13 ± 2 o C) than in 2002 (10 ± 2 o C), and fish captured in 2001 had significantly higher cortisol and lactate concentrations than fish captured in 2002. The pattern of increase in plasma cortisol and lactate was due to the amount of time fish were angled, and the upper limit of the response was due to water temperature. The results of this study indicate the importance of minimizing the duration of angling in order to reduce the sublethal physiological disturbances in wild fish subjected to catch-and-release angling, particularly during warmer water temperatures. It is also important to note that factors such as fish size may influence both the duration of angling and subsequent physiological response.

Fisheries Research↗
USGS2006

Hydroacoustic separation of rainbow smelt (Osmerus mordax) age groups in Lake Champlain

Separate assessment of young-of-year (YOY) and yearling-and-older (YAO) fish is desirable from both ecological and management perspectives. Acoustic assessments provide information on fish population size structure in the target strength (TS) distribution, but interpretation of TS distributions must be done carefully, as single age groups can produce multiple TS modes. We assessed the ability of in situ TS distributions to identify Lake Champlain rainbow smelt (Osmerus mordax) age groups in June, July, and September of 2001 using mobile and stationary surveys, knowledge of vertical distribution preferences, and predicted TS from trawl catches. YAO rainbow smelt (93-179 mm total length) had wide TS distributions between -60 and -35 dB in all 3 months with two modes at approximately -50 and -40 dB. Most stationary survey single-fish tracks attributed to YAO had targets in both TS modes and a wide TS range often over 15 dB. Between June and September, YOY rainbow smelt TS increased, but single-fish tracks were unimodal, and the TS range was smaller (6 dB). Overlap in TS attributed to YOY and YAO increased from no overlap in June (YOY TS -76 to -61 dB, 15-25 mm) to moderate overlap in July (-76 to -50 dB, 25-63 mm) to considerable overlap in September (-68 to -45 dB, 33-80 mm). In June and July, the TS distribution changed abruptly at the thermocline, indicating almost complete separation of the two groups. A more gradual TS transition was evident in September, indicating substantial overlap between YOY and YAO. Separate estimates can be obtained in September by decomposing TS overlap into components attributed to YOY and YAO rainbow smelt. However, this decomposition introduces additional uncertainty and an assessment in July or possibly August is preferable to obtain separate abundance estimates of YOY and YAO. ?? 2006 Elsevier B.V. All rights reserved.

Fisheries Research↗
USGS2007

Lack of size selectivity for paddlefish captured in hobbled gillnets

A commercial fishery for paddlefish Polyodon spathula caviar exists in Kentucky Lake, a reservoir on the lower Tennessee River. A 152-mm (bar-measure) minimum mesh size restriction on entanglement gear was enacted in 2002 and the minimum size limit was increased to 864 mm eye-fork length to reduce the possibility of recruitment overfishing. Paddlefish were sampled in 2003-2004 using experimental monofilament gillnets with panels of 89, 102, 127, 152, 178, and 203-mm meshes and the efficacy of the mesh size restriction was evaluated. Following the standards of commercial gear used in that fishery, nets were "hobbled" (i.e., 128 m ?? 3.6 m nets were tied down to 2.4 m; 91 m ?? 9.1 m nets were tied down to 7.6 m). The mean lengths of paddlefish (Ntotal = 576 fish) captured in each mesh were similar among most meshes and bycatch rates of sublegal fish did not vary with mesh size. Selectivity curves could not be modeled because the mean and modal lengths of fish captured in each mesh did not increase with mesh size. Ratios of fish girth to mesh perimeter (G:P) for individual fish were often less than 1.0 as a result of the largest meshes capturing small paddlefish. It is unclear whether lack of size selectivity for paddlefish was because the gillnets were hobbled, the unique morphology of paddlefish, or the fact that they swim with their mouths agape when filter feeding. The lack of size selectivity by hobbled gillnets fished in Kentucky Lake means that managers cannot influence the size of paddlefish captured by commercial gillnet gear by changing minimum mesh size regulations. ?? 2006 Elsevier B.V. All rights reserved.

Fisheries Research↗
USGS2008

Variability of community interaction networks in marine reserves and adjacent exploited areas

Regional and small-scale local oceanographic conditions can lead to high variability in community structure even among similar habitats. Communities with identical species composition can depict distinct networks due to different levels of disturbance as well as physical and biological processes. In this study we reconstruct community networks in four different areas off the Oregon Coast by matching simulated communities with observed dynamics. We compared reserves with harvested areas. Simulations suggested that different community networks, but with the same species composition, can represent each study site. Differences were found in predator-prey interactions as well as non-predatory interactions between community members. In addition, each site can be represented as a set of models, creating alternative stages among sites. The set of alternative models that characterize each study area depicts a sequence of functional responses where each specific model or interaction structure creates different species composition patterns. Different management practices, either in the past or of the present, may lead to alternative communities. Our findings suggest that management strategies should be analyzed at a community level that considers the possible consequences of shifting from one community scenario to another. This analysis provides a novel conceptual framework to assess the consequences of different management options for ecological communities. ?? 2008 Elsevier B.V. All rights reserved.

Fisheries Research↗
USGS2009

Can pelagic forage fish and spawning cisco (Coregonus artedi) biomass in the western arm of Lake Superior be assessed with a single summer survey?

Management efforts to rehabilitate lake trout Salvelinus namaycush in Lake Superior have been successful and the recent increase in their numbers has led to interest in measuring biomass of pelagic prey fish species important to these predators. Lake Superior cisco Coregonus artedi currently support roe fisheries and determining the sustainability of these fisheries is an important management issue. We conducted acoustic and midwater trawl surveys of the western arm of Lake Superior during three periods: summer (July-August), October, and November 2006 to determine if a single survey can be timed to estimate biomass of both prey fish and spawning cisco. We evaluated our methods by comparing observed trawl catches of small (<250 mm total length) and large fish to expected trawl catches based on acoustic densities in the trawl path. We found the relationship between observed and expected catches approached unity over a wide range of densities, suggesting that our acoustic method provided reasonable estimates of fish density, and that midwater trawling methods were free of species- and size-selectivity issues. Rainbow smelt Osmerus mordax was by number the most common species captured in the nearshore (<80 m bathymetric depth) stratum during all three surveys, while kiyi Coregonus kiyi was predominant offshore except during November. Total biomass estimates of rainbow smelt in the western arm were similar during all three surveys, while total biomass of kiyi was similar between summer and October, but was lower in November. Total biomass of large cisco increased substantially in November, while small bloater Coregonus hoyi biomass was lower. We compared our summer 2006 estimates of total fish biomass to the results of a summer survey in 1997 and obtained similar results. We conclude that the temporal window for obtaining biomass estimates of pelagic prey species in the western arm of Lake Superior is wide (July through October), but estimating spawning cisco abundance is best done with a November survey.

Fisheries Research↗
USGS2010

Traveling around Cape Horn: Otolith chemistry reveals a mixed stock of Patagonian hoki with separate Atlantic and Pacific spawning grounds

Trace element fingerprints of edge and core regions in otoliths from 260 specimens of Patagonian hoki, Macruronus magellanicus L??nnberg, 1907, were analyzed by LA-ICPMS to reveal whether this species forms one or more population units (stocks) in the Southern Oceans. Fish were caught on their spawning grounds in Chile and feeding grounds in Chile and the Falkland Islands. Univariate and multivariate analyses of trace element concentrations in the otolith edges, which relate to the adult life of fish, could not distinguish between Atlantic (Falkland) and Pacific (Chile) hoki. Cluster analyses of element concentrations in the otolith edges produced three different clusters in all sample areas indicating high mixture of the stocks. Cluster analysis of trace element concentrations in the otolith cores, relating to juvenile and larval life stages, produced two separate clusters mainly distinguished by 137 Ba concentrations. The results suggest that Patagonian hoki is a highly mixed fish stock with at least two spawning grounds around South America. ?? 2009 Elsevier B.V.

Fisheries Research↗
USGS2010

Using generalized linear models to estimate selectivity from short-term recoveries of tagged red drum Sciaenops ocellatus: Effects of gear, fate, and regulation period

Estimating the selectivity patterns of various fishing gears is a critical component of fisheries stock assessment due to the difficulty in obtaining representative samples from most gears. We used short-term recoveries ( n = 3587) of tagged red drum Sciaenops ocellatus to directly estimate age- and length-based selectivity patterns using generalized linear models. The most parsimonious models were selected using AIC, and standard deviations were estimated using simulations. Selectivity of red drum was dependent upon the regulation period in which the fish was caught, the gear used to catch the fish (i.e., hook-and-line, gill nets, pound nets), and the fate of the fish upon recovery (i.e., harvested or released); models including all first-order interactions between main effects outperformed models without interactions. Selectivity of harvested fish was generally dome-shaped and shifted toward larger, older fish in response to regulation changes. Selectivity of caught-and-released red drum was highest on the youngest and smallest fish in the early and middle regulation periods, but increased on larger, legal-sized fish in the late regulation period. These results suggest that catch-and-release mortality has consistently been high for small, young red drum, but has recently become more common in larger, older fish. This method of estimating selectivity from short-term tag recoveries is valuable because it is simpler than full tag-return models, and may be more robust because yearly fishing and natural mortality rates do not need to be modeled and estimated.

North Carolina↗
USGS2012

Relationship between mid-water trawling effort and catch composition uncertainty in two large lakes (Huron and Michigan) dominated by alosines, osmerids, and coregonines

Because it is not possible to identify species with echosounders alone, trawling is widely used as a method for collecting species and size composition data for allocating acoustic fish density estimates to species or size groups. In the Laurentian Great Lakes, data from midwater trawls are commonly used for such allocations. However, there are no rules for how much midwater trawling effort is required to adequately describe species and size composition of the pelagic fish communities in these lakes, so the balance between acoustic sampling effort and trawling effort has been unguided. We used midwater trawl data collected between 1986 and 2008 in lakes Michigan and Huron and a variety of analytical techniques to develop guidance for appropriate levels of trawl effort. We used multivariate regression trees and re-sampling techniques to i. identify factors that influence species and size composition of the pelagic fish communities in these lakes, ii. identify stratification schemes for the two lakes, iii. determine if there was a relationship between uncertainty in catch composition and the number of tows made, and iv. predict the number of tows required to reach desired uncertainty targets. We found that depth occupied by fish below the surface was the most influential explanatory variable. Catch composition varied between lakes at depths <38.5 m below the surface, but not at depths ≥38.5 m below the surface. Year, latitude, and bottom depth influenced catch composition in the near-surface waters of Lake Michigan, while only year was important for Lake Huron surface waters. There was an inverse relationship between RSE [relative standard error = 100 × (SE/mean)] and the number of tows made for the proportions of the different size and species groups. We found for the fifth (Lake Huron) and sixth (Lake Michigan) largest lakes in the world, 15–35 tows were adequate to achieve target RSEs (15% and 30%) for ubiquitous species, but rarer species required much higher, and at times, impractical effort levels to reach these targets.

Fisheries Research↗
USGS2013

A seascape approach to investigating fish spillover across a marine protected area boundary in Hawai'i

Marine protected areas (MPAs) can benefit fisheries through export of pelagic eggs and larvae and the net emigration of adults and juveniles (spillover). Spillover was investigated for a marine protected area on the north shore of Oahu, Hawai&lsquo;i utilizing a seascape approach. This study incorporated habitat variables and underwater visual surveys of fishes and benthos measured at two distinct scales (125 m 2 and 1000 m 2 ) inside and outside the protected area at varying distance from the boundary. The relationship between fish biomass from fine-scale surveys and key habitat variables was found to account for a large portion of the variability for both resource (targeted) fish species (15%) and non-resource fish (28%). The remaining variation in resource fish biomass was significantly correlated with distance from the MPA boundary showing a decreasing gradient from inside to outside ( r 2 = 0.46, p = 0.001), indicating fish spillover at a local scale (p = 0.45). The evidence of spillover based on the fine-scale surveys was corroborated by results from broad-scale surveys, which also showed a significant relationship ( r 2 = 0.19, p < 0.01) between resource fish biomass and distance from the MPA boundary. In addition, observed spatial distribution of fishing effort was consistent with predictions that fishers respond to biomass gradients across protected area boundaries. Fish spillover can help mitigate costs associated with the establishment of marine protected areas in terms of lost fishing area and therefore have a positive effect on the attitudes of fishers toward marine reserves and marine protected areas.

Hawai'i↗
USGS2013

Use of classification trees to apportion single echo detections to species: Application to the pelagic fish community of Lake Superior

Acoustic methods are used to estimate the density of pelagic fish in large lakes with results of midwater trawling used to assign species composition. Apportionment in lakes having mixed species can be challenging because only a small fraction of the water sampled acoustically is sampled with trawl gear. Here we describe a new method where single echo detections (SEDs) are assigned to species based on classification tree models developed from catch data that separate species based on fish size and the spatial habitats they occupy. During the summer of 2011, we conducted a spatially-balanced lake-wide acoustic and midwater trawl survey of Lake Superior. A total of 51 sites in four bathymetric depth strata (0–30 m, 30–100 m, 100–200 m, and >200 m) were sampled. We developed classification tree models for each stratum and found fish length was the most important variable for separating species. To apply these trees to the acoustic data, we needed to identify a target strength to length (TS-to-L) relationship appropriate for all abundant Lake Superior pelagic species. We tested performance of 7 general (i.e., multi-species) relationships derived from three published studies. The best-performing relationship was identified by comparing predicted and observed catch compositions using a second independent Lake Superior data set. Once identified, the relationship was used to predict lengths of SEDs from the lake-wide survey, and the classification tree models were used to assign each SED to a species. Exotic rainbow smelt (Osmerus mordax) were the most common species at bathymetric depths <100 m with their population estimated at 755 million (3.4 kt). Kiyi (Coregonus kiyi) were the most abundant species at depths >100 m (384 million; 6.0 kt). Cisco (Coregonus artedi) were widely distributed over all strata with their population estimated at 182 million (44 kt). The apportionment method we describe should be transferable to other large lakes provided fish are not tightly aggregated, and an appropriate TS-to-L relationship for abundant pelagic fish species can be determined.

Lake Superior↗
USGS2013

Degree-day accumulation influences annual variability in growth of age-0 walleye

The growth of age-0 fishes influences survival, especially in temperate regions where size-dependent over-winter mortality can be substantial. Additional benefits of earlier maturation and greater fecundity may exist for faster growing individuals. This study correlated prey densities, growing-degree days, water-surface elevation, turbidity, and chlorophyll a with age-0 walleye Sander vitreus growth in a south-central Nebraska irrigation reservoir. Growth of age-0 walleye was variable between 2003 and 2011, with mean lengths ranging from 128 to 231 mm by fall (September 30th–October 15th). A set of a priori candidate models were used to assess the relative support of explanatory variables using Akaike's information criterion (AIC). A temperature model using the growing degree-days metric was the best supported model, describing 65% of the variability in annual mean lengths of age-0 walleye. The second and third best supported models included the variables chlorophyll a (r 2 = 0.49) and larval freshwater drum density (r 2 = 0.45), respectively. There have been mixed results concerning the importance of temperature effects on growth of age-0 walleye. This study supports the hypothesis that temperature is the most important predictor of age-0 walleye growth near the southwestern limits of its natural range.

Nebraska↗
USGS2014

Blocking and guiding adult sea lamprey with pulsed direct current from vertical electrodes

Controlling the invasion front of aquatic nuisance species is of high importance to resource managers. We tested the hypothesis that adult sea lamprey ( Petromyzon marinus ), a destructive invasive species in the Laurentian Great Lakes, would exhibit behavioral avoidance to dual-frequency pulsed direct current generated by vertical electrodes and that the electric field would not injure or kill sea lamprey or non-target fish. Laboratory and in-stream experiments demonstrated that the electric field blocked sea lamprey migration and directed sea lamprey into traps. Rainbow trout ( Oncorhynchus mykiss ) and white sucker ( Catostomus commersoni ), species that migrate sympatrically with sea lamprey, avoided the electric field and had minimal injuries when subjected to it. Vertical electrodes are advantageous for fish guidance because (1) the electric field produced varies minimally with depth, (2) the electric field is not grounded, reducing power consumption to where portable and remote deployments powered by solar, wind, hydro, or a small generator are feasible, and (3) vertical electrodes can be quickly deployed without significant stream modification allowing rapid responses to new invasions. Similar dual-frequency pulsed direct current fields produced from vertical electrodes may be advantageous for blocking or trapping other invasive fish or for guiding valued fish around dams.

Michigan↗
USGS2014

Trade-offs in experimental designs for estimating post-release mortality in containment studies

Estimates of post-release mortality (PRM) facilitate accounting for unintended deaths from fishery activities and contribute to development of fishery regulations and harvest quotas. The most popular method for estimating PRM employs containers for comparing control and treatment fish, yet guidance for experimental design of PRM studies with containers is lacking. We used simulations to evaluate trade-offs in the number of containers (replicates) employed versus the number of fish-per container when estimating tagging mortality. We also investigated effects of control fish survival and how among container variation in survival affects the ability to detect additive mortality. Simulations revealed that high experimental effort was required when: (1) additive treatment mortality was small, (2) control fish mortality was non-negligible, and (3) among container variability in control fish mortality exceeded 10% of the mean. We provided programming code to allow investigators to compare alternative designs for their individual scenarios and expose trade-offs among experimental design options. Results from our simulations and simulation code will help investigators develop efficient PRM experimental designs for precise mortality assessment.

Fisheries Research↗