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At least 1,603 records · Page 89Linked to original sources

Dissimilatory arsenate reduction with sulfide as the electron donor--Experiments with Mono Lake water and isolation of strain MLMS-1, a chemoautotrophic arsenate-respirer

Anoxic bottom water from Mono Lake, California, can biologically reduce added arsenate without any addition of electron donors. Of the possible in situ inorganic electron donors present, only sulfide was sufficiently abundant to drive this reaction. We tested the ability of sulfide to serve as an electron donor for arsenate reduction in experiments with lake water. Reduction of arsenate to arsenite occurred simultaneously with the removal of sulfide. No loss of sulfide occurred in controls without arsenate or in sterilized samples containing both arsenate and sulfide. The rate of arsenate reduction in lake water was dependent on the amount of available arsenate. We enriched for a bacterium that could achieve growth with sulfide and arsenate in a defined, mineral medium and purified it by serial dilution. The isolate, strain MLMS-1, is a gram-negative, motile curved rod that grows by oxidizing sulfide to sulfate while reducing arsenate to arsenite. Chemoautotrophy was confirmed by the incorporation of H 14 CO 3 − into dark-incubated cells, but preliminary gene probing tests with primers for ribulose-1,5-biphosphate carboxylase/oxygenase did not yield PCR-amplified products. Alignment of 16S rRNA sequences indicated that strain MLMS-1 was in the δ- Proteobacteria , located near sulfate reducers like Desulfobulbus sp. (88 to 90% similarity) but more closely related (97%) to unidentified sequences amplified previously from Mono Lake. However, strain MLMS-1 does not grow with sulfate as its electron acceptor.

California↗

Effect of the oxidation rate and Fe(II) state on microbial nitrate-dependent Fe(III) mineral formation

A nitrate-dependent Fe(II)-oxidizing bacterium was isolated and used to evaluate whether Fe(II) chemical form or oxidation rate had an effect on the mineralogy of biogenic Fe(III) (hydr)oxides resulting from nitrate-dependent Fe(II) oxidation. The isolate (designated FW33AN) had 99% 16S rRNA sequence similarity to Klebsiella oxytoca. FW33AN produced Fe(III) (hydr)oxides by oxidation of soluble Fe(II) [Fe(II) sol ] or FeS under nitrate-reducing conditions. Based on X-ray diffraction (XRD) analysis, Fe(III) (hydr)oxide produced by oxidation of FeS was shown to be amorphous, while oxidation of Fe(II) sol yielded goethite. The rate of Fe(II) oxidation was then manipulated by incubating various cell concentrations of FW33AN with Fe(II) sol and nitrate. Characterization of products revealed that as Fe(II) oxidation rates slowed, a stronger goethite signal was observed by XRD and a larger proportion of Fe(III) was in the crystalline fraction. Since the mineralogy of Fe(III) (hydr)oxides may control the extent of subsequent Fe(III) reduction, the variables we identify here may have an effect on the biogeochemical cycling of Fe in anoxic ecosystems.

Applied and Environmental Microbiology↗

Corynebacterial kidney disease of salmonids: Growth and serological studies on the causative bacterium

Comparative growth studies of 10 isolates of the Corynebacterium of salmonid kidney disease were quantified on four media. Greatest cell yield was obtained from Mueller-Hinton medium with 0.1% L-cysteine hydrochloride. Serological tests, in which rabbit antisera used against typical bacteria strains showed all to be antigenically homologous, provided a reliable method of identification.

Applied Microbiology↗

Disruption of the Francisella noatunensis orientalis pdpA gene results in virulence attenuation and protection in zebrafish

Several Francisella spp. including F. noatunensis are regarded as important emerging pathogens of wild and farmed fish. However, very few studies have investigated the virulence factors that allow these bacterial species to be pathogenic in fish. The Francisella Pathogenicity Island (FPI) is a well-described, gene-dense region encoding major virulence factors for the genus Francisella. PdpA is a member of the pathogenicity determining protein genes encoded by the FPI that are implicated in the ability of the mammalian pathogen, F. tularensis , to escape and replicate in infected host cells. Using a sacB suicide approach, we generated pdpA knockouts to address the role of PdpA as a virulence factor for F. noatunensis . Because polarity can be an issue in gene-dense regions, we generated two different marker-based mutants in opposing polarity ( Fno Δ pdpA1 and Δ pdpA2 ). Both mutants were attenuated (p<0.0001) in zebrafish challenges and displayed impaired intracellular replication (p<0.05) and cytotoxicity (p<0.05), all of which could be restored to wild-type (WT) levels by complementation for Fno Δ pdpA 1. Importantly, differences were found for bacterial burden and induction of acute phase and pro-inflammatory genes for Fno Δ pdpA 1 and Δ pdpA 2 compared to WT during acute infection. In addition, neither mutant resulted in significant histopathological changes. Finally, immunization with Fno Δ pdpA1 led to protection (p<0.012) against an acute lethal-dose 40 challenge with WT Fno in the zebrafish model of infection. Taken together, this study further demonstrates physiological similarities within the genus Francisella relative to their phylogenetic relationships and the utility of zebrafish for addressing virulence factors for the genus.

Infection and Immunity↗

Location and description of spiral-shaped microorganisms in the normal rat cecum

Some indigenous microorganisms have been shown to localize in certain anatomical sites of the digestive tract of mammals. We studied the ceca of normal adult rats by light and electron microscopy to determine whether any specific bacterial population localizes in this area. All rats studied showed that the crypt was packed with organisms whose morphological character differs from those of the cecal lumen. Organisms localized in the crypt were often identified topographically close to the microvilli of the epithelial cells. These organisms could be differentiated into three types according to their characteristic ultrastructure. Type 1 was a thin spiral-shaped microbe that resembled a Borrelia. Type 2 possessed helically coiled fibers and flagella-like appendages. Type 3 was spiral-shaped but lacked axial fibers. Types 1 and 2 were both capable of penetrating through the crypt epithelium into the lamina propria where they were found in either phagocytes or extracellular locations. These observations are discussed in relation to other host-microflora localization patterns.

Infection and Immunity↗

Respiratory selenite reductase from Bacillus selenitireducens strain MLS10

The putative respiratory selenite [Se(IV)] reductase (Srr) from Bacillus selenitireducens MLS10 has been identified through a polyphasic approach involving genomics, proteomics, and enzymology. Nondenaturing gel assays were used to identify Srr in cell fractions, and the active band was shown to contain a single protein of 80 kDa. The protein was identified through liquid chromatography-tandem mass spectrometry (LC-MS/MS) as a homolog of the catalytic subunit of polysulfide reductase (PsrA). It was found to be encoded as part of an operon that contains six genes that we designated srrE , srrA , s rrB , srrC , srrD , and srrF . SrrA is the catalytic subunit (80 kDa), with a twin-arginine translocation (TAT) leader sequence indicative of a periplasmic protein and one putative 4Fe-4S binding site. SrrB is a small subunit (17 kDa) with four putative 4Fe-4S binding sites, SrrC (43 kDa) is an anchoring subunit, and SrrD (24 kDa) is a chaperon protein. Both SrrE (38 kDa) and SrrF (45 kDa) were annotated as rhodanese domain-containing proteins. Phylogenetic analysis revealed that SrrA belonged to the PsrA/PhsA clade but that it did not define a distinct subgroup, based on the putative homologs that were subsequently identified from other known selenite-respiring bacteria (e.g., Desulfurispirillum indicum and Pyrobaculum aerophilum ). The enzyme appeared to be specific for Se(IV), showing no activity with selenate, arsenate, or thiosulfate, with a K m of 145 ± 53 μM, a V max of 23 ± 2.5 μM min −1 , and a k cat of 23 ± 2.68 s −1 . These results further our understanding of the mechanisms of selenium biotransformation and its biogeochemical cycle.

Journal of Bacteriology↗

Yersinia philomiragia sp. n., a new member of the Pasteurella group of bacteria, naturally pathogenic for the muskrat (Ondatra zibethica)

A bacterium experimentally pathogenic for muskrats ( Ondatra zibethica ), white mice, mountain voles ( Microtus montanus ), and deer mice ( Peromyscus maniculatus ) was isolated from the tissues of a sick muskrat captured on the Bear River Migratory Bird Refuge (Brigham City, Utah) and from four surface water samples collected within 15 miles of that point. In culture, the cells are chiefly coccoid, but in the tissues of muskrats and voles they resemble the bizarre forms of Yersinia pestis , except for their smaller size. The characteristics of the organism are described and the name Yersinia philomiragia sp. n. is proposed.

Utah↗

Complete genome sequence of Fer-de-Lance Virus reveals a novel gene in reptilian Paramyxoviruses

The complete RNA genome sequence of the archetype reptilian paramyxovirus, Fer-de-Lance virus (FDLV), has been determined. The genome is 15,378 nucleotides in length and consists of seven nonoverlapping genes in the order 3??? N-U-P-M-F-HN-L 5???, coding for the nucleocapsid, unknown, phospho-, matrix, fusion, hemagglutinin-neuraminidase, and large polymerase proteins, respectively. The gene junctions contain highly conserved transcription start and stop signal sequences and tri-nucleotide intergenic regions similar to those of other Paramyxoviridae. The FDLV P gene expression strategy is like that of rubulaviruses, which express the accessory V protein from the primary transcript and edit a portion of the mRNA to encode P and I proteins. There is also an overlapping open reading frame potentially encoding a small basic protein in the P gene. The gene designated U (unknown), encodes a deduced protein of 19.4 kDa that has no counterpart in other paramyxoviruses and has no similarity with sequences in the National Center for Biotechnology Information database. Active transcription of the U gene in infected cells was demonstrated by Northern blot analysis, and bicistronic N-U mRNA was also evident. The genomes of two other snake paramyxovirus genotypes were also found to have U genes, with 11 to 16% nucleotide divergence from the FDLV U gene. Pairwise comparisons of amino acid identities and phylogenetic analyses of all deduced FDLV protein sequences with homologous sequences from other Paramyxoviridae indicate that FDLV represents a new genus within the subfamily Paramyxovirinae. We suggest the name Ferlavirus for the new genus, with FDLV as the type species.

Journal of Virology↗

Boulder Creek batholith, Colorado part I: Allanite and its bearing upon age patterns

Allanite is abundant and commonly attains unusually large size as a late-replacement mineral in: (1) the comagnatic rocks of the Precambrian Boulder Creek batholith; (2) associated amphibolite xenoliths and related hybrid rocks; and (3) distinctly younger intrusions of Silver Plume Granite that cut the complex. Allanite porphyroblasts develop by replacement of biotite, probably in the presence of emanations from the rare earth-rich and thorium-rich Silver Plume Granite. The largest allanite crystals are made up of nearly isotropic (metamict) cores and birefringent (recrystallized) rims. Smaller crystals are made up exclusively of birefringent material. The maximum birefringence is shown to be that expectable in allanite of Late Cretaceous to early Tertiary age. As plotted on maps, the birefringence increases, and the thorium and uranium contents of the allanite decrease toward a Laramide stock. The variation in birefringence is, therefore, largely relatable to variations in the post-Laramide radiation dosage brought about by differences in the amounts of uranium and thorium lost during recrystallization. The recrystallized allanite is itself partly replaced by epidote which characteristically occurs as a border between allanite and biotite. Total rare-earth oxides for the eight samples of allanite analyzed range from 17.5 to 21.3 percent by weight. In 13 samples, thorium ranged from 0.50 to 1.14 percent by weight, and uranium from 54 to 158 parts pparts per million. Ranges in optical measurements for 20 samples using the spindle stage are: Nα = 1.719–1.759, Nβ = 1.731-1.774, N γ = 1.741–1.784, birefringence = 0.020–0.032, 2V X (calc.) 70°–84°. Ranges for unit-cell data obtained on 8 samples are: a = 8.948–8.985Å, b = 5.721-5.763Å, c = 10.184–10.240Å, β = 115°7.50′–115°25.89′ and volume = 473.02–478.43Å 3 . The average value for the ratio a:b:c = 1.561:1:1.778.

Colorado↗

Preliminary evidence for the involvement of budding bacteria in the origin of Alaskan placer gold

Lacelike networks of micrometre-size filiform gold associated with Alaskan placer gold particles are interpreted as low-temperature pseudomorphs of a Pedomicrobium -like budding bacterium. Submicron reproductive structures (hyphae) and other morphological features similar to those of Pedomicrobium manganicum occur as detailed three-dimensional facsimiles in high-purity gold in and on placer gold particles from Lillian Creek, Alaska. In a scanning electron microscope survey, the majority of gold particles at nine Alaskan placer deposits appear to include gold that has accumulated chemically at low temperatures in and on the cells of P . manganicum . Similar bacterioform gold from a Paleozoic deposit in China and from the Precambrian Witwatersrand deposit in South Africa may indicate that bacterioform gold is widespread.

Geology↗

Controls on the distribution and isotopic composition of helium in deep ground-water flows

The distribution and isotopic composition of helium in sedimentary basins can be used to interpret the ages of very old ground waters. The piston-flow model commonly used in such interpretation, however, does not account for several important factors and as such works well only in very simple flow regimes. In this study of helium transport in a hypothetical sedimentary basin, we develop a numerical model that accounts for the magnitude and distribution of the basal helium flux, hydrodynamic dispersion, and complexities in flow regimes such as subregional flow cells. The modeling shows that these factors exert strong controls on the helium distribution and isotopic composition. The simulations may provide a basis for more accurate interpretations of observed helium concentrations and isotopic ratios in sedimentary basins.

Geology↗

Sediment accumulation on the Southern California Bight continental margin during the twentieth century

Sediment discharged into the portion of the Southern California Bight extending from Santa Barbara to Dana Point enters a complex system of semi-isolated coastal cells, narrow continental shelves, submarine canyons, and offshore basins. On both the Santa Monica and San Pedro margins, 210 Pb accumulation rates decrease in an offshore direction (from ??0.5 g cm -2 yr -1 to 0.02 g cm -2 yr -1 ), in concert with a fining in sediment grain size (from 4.5?? to 8.5??), suggesting that offshore transport of wave-resuspended material occurs as relatively dilute nepheloid layers and that hemiplegic sedimentation dominates the supply of sediment to the outer shelf, slope, and basins. Together, these areas are effectively sequestering up to 100% of the annual fluvial input. In contrast to the Santa Monica margin, which does not display evidence of mass wasting as an important process of sediment delivery and redistribution, the San Pedro margin does provide numerous examples of failures and mass wasting, suggesting that intraslope sediment redistribution may play a more important role there. Basin deposits in both areas exhibit evidence of turbidites tentatively associated with both major floods and earthquakes, sourced from either the Redondo Canyon (San Pedro Basin) or Dume Canyon (Santa Monica Basin). On the Palos Verdes shelf, sediment-accumulation rates decrease along and across the shelf away from the White's Point outfall, which has been a major source of contaminants to the shelf deposits. Accumulation rates prior to the construction of the outfall were ??0.2 g cm -2 yr -1 and increased 1.5-3.7 times during peak discharges from the outfall in 1971. The distal rate of accumulation has decreased by ??50%, from 0.63 g cm -2 yr -1 during the period 1971-1992 to 0.29 g cm -2 yr -1 during the period 1992-2003. The proximal rate of accumulation, however, has only decreased ??10%, from 0.83 g cm -2 yr -1 during the period 1971-1992 to 0.73 g cm -2 yr -1 during the period 1992-2003. Effluent-affected sediment layers on the Palos Verdes shelf can be identified in seabed profiles of naturally occurring 238 U, which is sequestered in reducing sediments. The Santa Clara River shelf, just north and west of the Santa Monica and San Pedro margins, is fine-grained and flood-dominated. Core profiles of excess 210 Pb from sites covering the extent of documented major flood deposition exhibit evidence of rapidly deposited sediment up to 25 cm thick. These beds are developing in an active depocenter in water depths of 30-50 m at an average rate of 0.72 g cm -2 yr -1 . Budget calculations for annual and 50-yr timescale sediment storage on this shelf shows that 20%-30% of the sediment discharge is retained on the shelf, leaving 70%-80% to be redistributed to the outer shelf, slope, Santa Barbara Basin, and Santa Monica Basin. ?? 2009 The Geological Society of America.

Special Paper of the Geological Society of America↗

Geochemical evidence for airborne dust additions to soils in Channel Islands National Park, California

There is an increasing awareness that dust plays important roles in climate change, biogeochemical cycles, nutrient supply to ecosystems, and soil formation. In Channel Islands National Park, California, soils are clay-rich Vertisols or Alfisols and Mollisols with vertic properties. The soils are overlain by silt-rich mantles that contrast sharply with the underlying clay-rich horizons. Silt mantles contain minerals that are rare or absent in the volcanic rocks that dominate these islands. Immobile trace elements (Sc-Th-La and Ta-Nd-Cr) and rare-earth elements show that the basalt and andesite on the islands have a composition intermediate between upper-continental crust and oceanic crust. In contrast, the silt fractions and, to a lesser extent, clay fractions of the silt mantle have compositions closer to average upper-continental crust and very similar to Mojave Desert dust. Island shelves, exposed during the last glacial period, could have provided a source of eolian sediment for the silt mantles, but this is not supported by mineralogical data. We hypothesize that a more likely source for the silt-rich mantles is airborne dust from mainland California and Baja California, either from the Mojave Desert or from the continental shelf during glacial low stands of sea. Although average winds are from the northwest in coastal California, easterly winds occur numerous times of the year when "Santa Ana" conditions prevail, caused by a high-pressure cell centered over the Great Basin. The eolian silt mantles constitute an important medium of plant growth and provide evidence that abundant eolian silt and clay may be delivered to the eastern Pacific Ocean from inland desert sources. ?? 2007 Geological Society of America.

Geological Society of America Bulletin↗

Coarse-grained sediment delivery and distribution in the Holocene Santa Monica Basin, California: Implications for evaluating source-to-sink flux at millennial time scales

Utilizing accumulations of coarse-grained terrigenous sediment from deep-marine basins to evaluate the relative contributions of and history of controls on sediment flux through a source-to-sink system has been difficult as a result of limited knowledge of event timing. In this study, six new radiocarbon ( 14 C) dates are integrated with five previously published dates that have been recalibrated from a 12.5-m-thick turbidite section from Ocean Drilling Program (ODP) Site 1015 in Santa Monica Basin, offshore California. This borehole is tied to high-resolution seismic-reflection profiles that cover an 1100 km 2 area of the middle and lower Hueneme submarine fan and most of the basin plain. The resulting stratigraphic framework provides the highest temporal resolution for a thick-bedded Holocene turbidite succession to date, permitting an evaluation of source-to-sink controls at millennial (1000 yr) scales. The depositional history from 7 ka to present indicates that the recurrence interval for large turbidity-current events is relatively constant (300-360 yr), but the volume of sediment deposited on the fan and in the basin plain has increased by a factor of 2 over this period. Moreover, the amount of sand per event on the basin plain during the same interval has increased by a factor of 7. Maps of sediment distribution derived from correlation of seismic-reflection profiles indicate that this trend cannot be attributed exclusively to autogenic processes (e.g., progradation of depocenters). The observed variability in sediment accumulation rates is thus largely controlled by allogenic factors, including: (1) increased discharge of Santa Clara River as a result of increased magnitude and frequency of El Ni??o-Southern Oscillation (ENSO) events from ca. 2 ka to present, (2) an apparent change in routing of coarse-grained sediment within the staging area at ca. 3 ka (i.e., from direct river input to indirect, littoral cell input into Hueneme submarine canyon), and (3) decreasing rates of sea-level rise (i.e., rate of rise slowed considerably by ca. 3 ka). The Holocene history of the Santa Clara River-Santa Monica Basin source-to-sink system demonstrates the ways in which varying sediment flux and changes in dispersal pathways affect the basinal stratigraphic record. ?? 2009 Geological Society of America.

Geological Society of America Bulletin↗

Hyperpycnal sediment discharge from semiarid southern California rivers: Implications for coastal sediment budgets

Southern California rivers discharge hyperpycnal (river density greater than ocean density) concentrations of suspended sediment (>40 g/L, according to buoyancy theory) during flood events, mostly during El Nin??o-Southern Oscillation (ENSO) conditions. Because hyperpycnal river discharge commonly occurs during brief periods (hours to occasionally days), mean daily flow statistics often do not reveal the magnitude of these events. Hyperpycnal events are particularly important in rivers draining the Transverse Range and account for 75% of the cumulative sediment load discharged by the Santa Clara River over the past 50 yr. These events are highly pulsed, totaling only ??? 30 days (??? 0.15% of the total 50 yr period). Observations of the fate of sediment discharge, although rare, are consistent with hyperpycnal river dynamics and the high likelihood of turbidity currents during these events. We suggest that much of the sediment load initially bypasses the littoral circulation cells and is directly deposited on the adjacent continental shelf, thus potentially representing a loss of immediate beach sand supply. During particularly exceptional events (>100 yr recurrence intervals), flood underflows may extend past the shelf and escape to offshore basins.

Geology↗

Hydrologic models of modern and fossil geothermal systems in the Great Basin: Genetic implications for epithermal Au-Ag and Carlin-type gold deposits

The Great Basin region in the western United States contains active geothermal systems, large epithermal Au-Ag deposits, and world-class Carlin-type gold deposits. Temperature profiles, fluid inclusion studies, and isotopic evidence suggest that modern and fossil hydrothermal systems associated with gold mineralization share many common features, including the absence of a clear magmatic fluid source, discharge areas restricted to fault zones, and remarkably high temperatures (>200 ??C) at shallow depths (200-1500 m). While the plumbing of these systems varies, geochemical and isotopic data collected at the Dixie Valley and Beowawe geothermal systems suggest that fluid circulation along fault zones was relatively deep (>5 km) and comprised of relatively unexchanged Pleistocene meteoric water with small (<2.5%) shifts from the meteoric water line (MWL). Many fossil ore-forming systems were also dominated by meteoric water, but usually exhibit ??18O fluid-rock interactions with larger shifts of 5???-20??? from the MWL. Here we present a suite of two-dimensional regional (100 km) and local (40-50 km) scale hydrologic models that we have used to study the plumbing of modern and Tertiary hydrothermal systems of the Great Basin. Geologically and geophysically consistent cross sections were used to generate somewhat idealized hydrogeologic models for these systems that include the most important faults, aquifers, and confining units in their approximate configurations. Multiple constraints were used, including enthalpy, ??18O, silica compositions of fluids and/or rocks, groundwater residence times, fluid inclusion homogenization temperatures, and apatite fission track anomalies. Our results suggest that these hydrothermal systems were driven by natural thermal convection along anisotropic, subvertical faults connected in many cases at depth by permeable aquifers within favorable lithostratigraphic horizons. Those with minimal fluid ?? 18O shifts are restricted to high-permeability fault zones and relatively small-scale (???5 km), single-pass flow systems (e.g., Beowawe). Those with intermediate to large isotopic shifts (e.g., epithermal and Carlin-type Au) had larger-scale (???15 km) loop convection cells with a greater component of flow through marine sedimentary rocks at lower water/rock ratios and greater endowments of gold. Enthalpy calculations constrain the duration of Carlin-type gold systems to probably <200 k.y. Shallow heat flow gradients and fluid silica concentrations suggest that the duration of the modern Beowawe system is <5 k.y. However, fluid flow at Beowawe during the Quaternary must have been episodic with a net duration of ???200 k.y. to account for the amount of silica in the sinter deposits. In the Carlin trend, fluid circulation extended down into Paleozoic siliciclastic rocks, which afforded more mixing with isotopically enriched higher enthalpy fluids. Computed fission track ages along the Carlin trend included the convective effects, and ranged between 91.6 and 35.3 Ma. Older fission track ages occurred in zones of groundwater recharge, and the younger ages occurred in discharge areas. This is largely consistent with fission track ages reported in recent studies. We found that either an amagmatic system with more permeable faults (10-11 m2) or a magmatic system with less permeable faults (10-13 m2) could account for the published isotopic and thermal data along the Carlin trend systems. Localized high heat flow beneath the Muleshoe fault was needed to match fl uid inclusion temperatures at Mule Canyon. However, both magmatic and amagmatic scenarios require the existence of deep, permeable faults to bring hot fluids to the near surface. ?? 2008 Geological Society of America.

Geosphere↗

Brown coal maceral distributions in a modern domed tropical Indonesian peat and a comparison with maceral distributions in Middle Pennsylvanian–age Appalachian bituminous coal beds

Analyses of modern Indonesian peat samples reveal that the optical characteristics of peat constituents are consistent with the characteristics of macerals observed in brown coal and, as found by previous workers, brown-coal maceral terminology can be used in the analysis of modern peat. A core from the margin and one from near the center of a domed peat deposit in Riau Province, Sumatra, reveal that the volume of huminite macerals representing well-preserved cell structures (red, red-gray, and gray textinite; ulminite; and corpo/textinite) decreases upward. Huminite macerals representing severely degraded (<20 microns) cellular debris (degraded textinite, attrinite, and densinite) increase uniformly from the base to the surface. Greater degradation of the huminite macerals in the upper peat layers in the interior of the deposit is interpreted to be the result of fungal activity that increased in response to increasingly aerobic conditions associated with the doming of the peat deposit. Aerobic conditions concurrent with the activities of fungi may result in incipient oxidation of the severely degraded huminite macerals. This oxidation could lead to the formation of degradosemifusinite, micrinite, and macrinite maceral precursors in the peat, which may become evident only upon coalification. The core at the margin was petrographically more homogeneous than the core from the center and was dominated by well-preserved huminite macerals except in the upper 1 m, which showed signs of aerobic degradation and was similar to the upper 1 m of the peat in the interior of the deposit. The Stockton and other Middle Pennsylvanian Appalachian coal beds show analogous vertical trends in vitrinite maceral composition. The succession from telocollinite-rich, bright coal lithotypes in the lower benches upward to thin-banded/matrix collinite and desmocollinite in higher splint coal benches is believed to reflect a progression similar to that from the well-preserved textinite macerals in the lower portions of the peat cores to severely fragmented and degraded cellular materials (degraded textinite, attrinite, and densinite) in the upper portions of the cores. This petrographic sequence from bright to splint coal in the Stockton and other Middle Pennsylvanian coal beds supports previous interpretations of an upward transition from planar to domed swamp accumulations.

Special Paper of the Geological Society of America↗

Life history trade-offs and community dynamics of small fishes in a seasonally pulsed wetland

We used a one-dimensional, spatially explicit model to simulate the community of small fishes in the freshwater wetlands of southern Florida, USA. The seasonality of rainfall in these wetlands causes annual fluctuations in the amount of flooded area. We modeled fish populations that differed from each other only in efficiency of resource utilization and dispersal ability. The simulations showed that these trade-offs, along with the spatial and temporal variability of the environment, allow coexistence of several species competing exploitatively for a common resource type. This mechanism, while sharing some characteristics with other mechanisms proposed for coexistence of competing species, is novel in detail. Simulated fish densities resembled patterns observed in Everglades empirical data. Cells with hydroperiods less than 6 months accumulated negligible fish biomass. One unique model result was that, when multiple species coexisted, it was possible for one of the coexisting species to have both lower local resource utilization efficiency and lower dispersal ability than one of the other species. This counterintuitive result is a consequence of stronger effects of other competitors on the superior species. ?? 2005 NRC.

Conference Paper↗