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At least 1,585 records · Page 88Linked to original sources
USGS2011

Migration strategies of Swan Geese Anser cygnoides from northeast Mongolia

In 2006–2008, 25 Swan Geese Anser cygnoides were marked with solar-powered GPS satellite transmitters in northeast Mongolia to examine the timing and pathways of their migration. Most geese began their autumn migration in August, flying southeast toward a staging area at the Yalu River Estuary on the China-North Korea border. After staging for several weeks, the Swan Geese continued to their wintering grounds at wetlands along the Yangtze River Basin of eastern China in December. Spring migration commenced in late February, and the birds following either a same-route or loop migration to arrive at the breeding grounds in mid April. Swan Geese used a larger number of staging areas for a longer duration when they were north of 42°N latitude; they seemed to avoid staging for extended periods in the highly urbanised areas of eastern China. Further research should examine threats and disturbances to the geese in relation to human population growth and increasing urbanisation.

Wildfowl↗
USGS1998

Paragenesis and chemistry of multistage tourmaline formation in the sullivan Pb-Zn-Ag deposit, British Columbia

Detailed petrographic study, scanning electron microscope imaging, and electron microprobe analyses of tourmalines from the Sullivan Pb-Zn-Ag massive sulfide deposit (British Columbia, Canada) document multiple paragenetic stages and large compositional variations. The tourmalines mainly belong to two common solid-solution series: dravite-schorl and dravite-uvite. Ca- and Fe-rich feruvite and alkali-deficient tourmalines are present locally. Products of tourmaline-forming stages include (from oldest to youngest): (1) rare Fe-rich dravite-schorl within black tourmalinite clasts in footwall fragmental rocks; (2) widespread Mg-rich, very fine grained, felted dravite in the footwall (the main type of tourmaline in the footwall tourmalinite pipe); (3) recrystallized, Fe-rich dravite-schorl (locally Ca-Fe feruvite) in the tourmalinite pipe, which preferentially occurs near postore gabbroic intrusions; (4) Mg-rich dravite or uvite associated with chlorite-pyrrhotite and chlorite-albite-pyrite-altered rocks in the shallow footwall and hanging wall; (5) discrete Mg-rich tourmaline grains associated with chlorite and discordant Mg-rich tourmaline rims which occur on disseminated Fe-rich schorl in the bedded Pb-Zn-Ag ores. The timing of rare Fe-rich schorl in the bedded ores is uncertain, but it most likely occurred during or between stages 2 and 3. The different paragenetic stages and their respective tourmaline compositions are interpreted in terms of a multistage evolution involving contributions from: (1) variable mixtures of synsedimentary, Fe-rich hydrothermal fluids and entrained seawater; (2) postore, Fe-rich, gabbro-related hydrothermal fluids; and (3) postore metamorphic reactions. Early synsedimentary, Fe-rich hydrothermal fluids which contained little or no entrained seawater formed Fe-rich black tourmalinite clasts locally in the footwall. The major type of tourmaline in the footwall tourmalinite pipe is Mg rich, recording seawater entrainment under high water/rock conditions, rather than control by the chemical composition of the original host sediments. Rare Fe-rich schorl within the bedded Pb-Zn-Ag ores is believed to have formed on the sea floor by reaction of an Fe-rich brine pool with detrital aluminous sediments. Postore emplacement of gabbro sills and local dikes in the footwall produced Fe-rich hydrothermal fluids, which were responsible for formation of minor Fe-rich dravite-schorl which overprinted earlier dravite. Postore, but synsedimentary, hydrothermal alteration involving entrained seawater was responsible for deposition of dravite and uvite in the hanging wall and for dravite in the brown tourmalinites of the shallow footwall. Mg-rich dravite-uvite associated with chlorite and in discordant rims on schorl in the bedded ores formed by sulfide-silicate reactions during greenschist facies regional metamorphism.

Economic Geology↗
USGS1998

Geological setting and petrogenesis of symmetrically zoned, miarolitic granitic pegmatites at Stak Nala, Nanga Parbat - Haramosh Massif, northern Pakistan

Miarolitic granitic pegmatites in the Stak valley in the northeast part of the Nanga Parbat - Haramosh Massif, in northern Pakistan, locally contain economic quantities of bi- and tricolored tourmaline. The pegmatites form flat-lying sills that range from less than 1 m to more than 3 m thick and show symmetrical internal zonation. A narrow outer or border zone of medium-to coarse-grained oligoclase - K-feldspar - quartz grades inward to a very coarse-grained wall zone characterized by K-feldspar - oligoclase - quartz - schorl tourmaline. Radiating sprays of schorl and flaring megacrysts of K-feldspar (intermediate microcline) point inward, indicating progressive crystallization toward the core. The core zone consists of variable mixtures of blocky K-feldspar (intermediate microcline), oligoclase, quartz, and sparse schorl or elbaite, with local bodies of sodic aplite and miarolitic cavities or "pockets". Minor spessartine-almandine garnet and lo??llingite are disseminated throughout the pegmatite, but were not observed in the pockets. The pockets contain well-formed crystals of albite, quartz, K-feldspar (maximum microcline ?? orthoclase overgrowths), schorl-elbaite tourmaline, muscovite or lepidolite, topaz, and small amounts of other minerals. Elbaite is color-zoned from core to rim: green (Fe2+- and Mn2+-bearing), colorless (Mn2+-bearing), and light pink (trace Mn3+). Within ???10 cm of the pegmatites, the granitic gneiss wallrock is bleached owing to conversion of biotite to muscovite, with local quartz and albite added. Schorl is disseminated through the altered gneiss, and veins of schorl with bleached selvages locally traverse the wallrock up to 1 m from the pegmatite contact. The schorl veins can be traced into the outer part of the wall zone, which suggests that they formed from aqueous fluids derived during early saturation of the pegmatite-forming leucogranitic magma rich in H2O, F, B, and Li. Progressive crystallization resulted in a late-stage sodic magma and abundant aqueous fluids. Two late stages of volatile escape are recognized: the first stage caused pressure-quenching of the last magma, which produced aplite and caused albitization (An3 to An8) of earlier crystallized K-feldspar and oligoclase. The second stage, released during the rupture of miarolitic cavities, produced platy albite ("cleavelandite," An1) locally associated with F-rich moscovite and elbaite. Albitization is likely due to cooling of alkali-fluoride-dominated fluids at less than 2 kbar pressure. The pegmatites are derived from Himalayan leucogranitic magma emplaced prior to 5 Ma into granulitic gneiss that was at 300?? to 550??C and 1.5 to 2 kbar. The pegmatites were emplaced during uplift of the Haramosh Massif, since they cross-cut ductile normal faults but are cut by brittle normal faults. Economically important pink tourmaline mineralization formed in pockets concentrated near the crest of a broad antiform, as a result of trapping of late magmatic aqueous fluids that had become Fe-poor owing to the prior crystallization of schorl.

Canadian Mineralogist↗
USGS2003

Myxosporean plasmodial infection associated with ulcerative lesions in young-of-the-year Atlantic menhaden in a tributary of the Chesapeake Bay, and possible links to Kudoa clupeidae

Ulcers in Atlantic menhaden Brevoortia tyrannus (Latrobe) (Clupeidae), observed along the USA east coast, have been attributed to diverse etiologies including bacterial, fungal and, recently, harmful algal blooms. To understand the early pathogenesis of these lesions, we examined juvenile Atlantic menhaden collected during their seasonal presence in Chesapeake Bay tributaries from April to October 1999 and from March to August 2000. We conducted histopathological examinations of young-of-the-year fish from the Pocomoke River tributary, which has a history of fish mortalities and high lesion prevalence. Kudoa clupeidae (Myxozoa: Myxosporea) spores were present in the muscles of fish collected in both years. Of the fish assessed by histology in April, 5 to 14% were infected, while in May 90 to 96% were infected. Infection rates remained high during the summer. Mature spores were primarily located within myomeres and caused little or no observable pathological changes. Ultrastructure showed spores with capsulogenic cells bearing filamentous projections, and a basal crescentic nucleus with mottled nucleoplasm containing cleaved, condensed chromatin. Also, a highly invasive plasmodial stage of a myxozoan was found in the lesions of juvenile Atlantic menhaden. The plasmodia were observed in fish collected between May and July, with the maximum occurrence in late June 1999 and late May 2000. Plasmodia penetrated and surrounded muscle bundles, causing grossly observable raised lesions in 73% of all fish infected with this invasive stage. Plasmodia were also detected in the visceral organs, branchial arches, and interocular muscles of some fish. Some of the invasive extrasporogonic plasmodial lesions were associated with ulcers and chronic inflammatory infiltrates. The plasmodial stage appeared to slough out of the tissue with subsequent evidence of wound healing. Ultrastructure showed plasmodia with an elaborate irregular surface, divided into distinct ectoplasm and endoplasm; the latter contained numerous spherical vegetative nuclei, secondary generative cells, and occasional cell doublets. Our ultrastructural studies indicate that the plasmodial organisms, which are important in the etiology of the skin lesions, are myxozoans, and they may represent early stages of K. clupeidae.

Diseases of Aquatic Organisms↗
USGS2003

Initiation of deformation of the Eastern California Shear Zone: Constraints from Garlock fault geometry and GPS observations

We suggest a 2-stage deformation model for the Eastern California Shear Zone (ECSZ) to explain the geometry of the Garlock fault trace. We assume the Garlock fault was originally straight and then was gradually curved by right-lateral shear deformation across the ECSZ. In our 2-stage deformation model, the first stage involves uniform shear deformation across the eastern part of the shear zone, and the second stage involves uniform shear deformation across the entire shear zone. In addition to the current shape of the Garlock fault, our model incorporates constraints on contemporary deformation rates provided by GPS observations. We find that the best fitting age for initiation of shear in eastern part of the ECSZ is about 5.0 ?? 0.4 Ma, and that deformation of the western part started about 1.6 Myr later.

Geophysical Research Letters↗
USGS2006

Variability in supply and cross-shelf transport of pink shrimp ( Farfantepenaeus duorarum ) postlarvae into western Florida Bay

The variability in the supply of pink shrimp ( Farfantepenaeus duorarum ) postlarvae and the transport mechanisms of planktonic stages were investigated with field data and simulations of transport. Postlarvae entering the nursery grounds of Florida Bay were collected for three consecutive years at channels that connect the Bay with the Gulf of Mexico, and in channels of the Middle Florida Keys that connect the southeastern margin of the Bay with the Atlantic Ocean. The influx of postlarvae in the Middle Florida Keys was low in magnitude and varied seasonally and among years. In contrast, the greater postlarval influx occurred at the northwestern border of the Bay, where there was a strong seasonal pattern with peaks in influx from July through September each year. Planktonic stages need to travel up to 150 km eastward between spawning grounds (northeast of Dry Tortugas) and nursery grounds (western Florida Bay) in about 30 days, the estimated time of planktonic development for this species. A Lagrangian trajectory model was developed to estimate the drift of planktonic stages across the SW Florida shelf. The model simulated the maximal distance traveled by planktonic stages under various assumptions of behavior. Simulation results indicated that larvae traveling with the instantaneous current and exhibiting a diel behavior travel up to 65 km and 75% of the larvae travel only 30 km. However, the eastward distance traveled increased substantially when a larval response to tides was added to the behavioral variable (distance increased to 200 km and 85% of larvae traveled 150 km). The question is, when during larval development, and where on the shallow SW Florida shelf, does the tidal response become incorporated into the behavior of pink shrimp.

Florida↗
USGS2017

Volcanic cloud evolution: Characteristics, observational capabilities and challenges

Volcanic clouds composed of solid particles, volcanic gases, and related aerosols evolve from the time of eruption until the cloud constituents are removed from the atmosphere. While airborne, they have the potential to cause damage to aircraft, ranging from acute encounters that can lead to an immediate hazard to flight safety, to chronic wear on aircraft components, to benign encounters where no observable impacts occur. We highlight the evolution of cloud properties through three stages: Stage 1 (recent), through Stage 2 (intermediate), to Stage 3 (final) and comment on the current observational capabilities and challenges of detection and characterization of volcanic clouds.

Conference Paper↗
USGS1999

Factors controlling the establishment of Fremont cottonwood seedlings on the Upper Green River, USA

Declines in cottonwood ( Populus spp.) recruitment along alluvial reaches of large rivers in arid regions of the western United States have been attributed to modified flow regimes, lack of suitable substrate, insufficient seed rain, and increased interspecific competition. We evaluated whether and how these factors were operating during 1993–1996 to influence demographics of Fremont cottonwood ( P. deltoides Marshall subsp. wislizenii (Watson) Eckenwalder) along reaches of the Green and Yampa Rivers near their confluence in northwestern Colorado. We examined seedling establishment, defined as survival through three growing seasons, at three alluvial reaches that differed primarily in the level of flow regulation: a site on the unregulated Yampa, an upper Green River site regulated by Flaming Gorge Dam, and a lower Green River site below the Green–Yampa confluence. Seed rain was abundant in all sites, and led to large numbers of germinants (first-year seedlings) appearing each year at all sites. The regulated flow in the upper Green River reach restricted germination to islands and cut banks that were later inundated or eroded; no seedlings survived there. Mortality at the lower Green River site was due largely to desiccation or substrate erosion; 23% of 1993 germinants survived their first growing season, but at most 2% survived through their second. At the Yampa River site, germinants appeared on vegetated and unvegetated surfaces up to 2.5 m above base flow stage, but survived to autumn only on bare surfaces at least 1.25 m above base flow stage, and where at least 10 of the upper 40 cm of the alluvium was fine-textured. Our studies of rooting depths and the stable isotopic composition of xylem water showed that seedlings in the most favorable locations for establishment at the Yampa site do not become phreatophytic until their third or fourth growing season. Further, the results of experimental field studies examining effects of shade and competition supported the hypothesis that insufficient soil moisture, possibly in combination with insufficient light, restricts establishment to unvegetated sites. Collectively, the demographic and experimental studies suggest that, in arid regions, soil water availability is at least as important as light level in limiting establishment of Fremont cottonwood seedlings. We hypothesize that in cases where arid land rivers experience large spring stage changes, recruitment is further constrained within bare areas to those sites that contain sufficient fine-textured alluvium, saturated during the spring flood, to provide the flood-derived soil moisture normally necessary for late-summer seedling survival.

Upper Green River↗
USGS2020

Highly variable rates of survival to metamorphosis in wild boreal toads (Anaxyrus boreas boreas)

Life history theory suggests that long‐lived, pond‐breeding amphibians should have low and highly variable early life‐stage survival rates, but this theoretical expectation is often untested and the causes of variation are usually unknown. We evaluated the impact of hydroperiod, presence of a pathogen ( Batrachochytrium dendrobatidis [Bd]), presence of a potential predator (cutthroat trout Oncorhychus clarki stomias) , and whether animals had been reintroduced into a site on survival of early life stages of boreal toads ( Anaxyrus boreas boreas ). We used a multistate mark‐recapture framework to estimate survival of boreal toad embryos from egg to metamorphosis at four sites over 5 years. We found substantial spatial and temporal variation in survival to metamorphosis and documented some evidence that monthly tadpole survival was lower in sites with Bd, without trout, and at permanent sites. Our results support theories of amphibian life history, aid in the management of this species of conservation concern, and contribute to our knowledge of the ecology of the species. Additionally, we present methodology that allows practitioners to account for different lengths of time between sampling periods when estimating survival probabilities which is especially applicable to organisms with distinct biological stages.

Population Ecology↗
USGS2015

The role of dynamic surface water-groundwater exchange on streambed denitrification in a first-order, low-relief agricultural watershed

The role of temporally varying surface water-groundwater (SW-GW) exchange on nitrate removal by streambed denitrification was examined along a reach of Leary Weber Ditch (LWD), Indiana, a small, first-order, low-relief agricultural watershed within the Upper Mississippi River basin, using data collected in 2004 and 2005. Stream stage, GW heads (H), and temperatures (T) were continuously monitored in streambed piezometers and stream bank wells for two transects across LWD accompanied by synoptic measurements of stream stage, H, T, and nitrate (NO 3 ) concentrations along the reach. The H and T data were used to develop and calibrate vertical two-dimensional, models of streambed water flow and heat transport across and along the axis of the stream. Model-estimated SW-GW exchange varied seasonally and in response to high-streamflow events due to dynamic interactions between SW stage and GW H. Comparison of 2004 and 2005 conditions showed that small changes in precipitation amount and intensity, evapotranspiration, and/or nearby GW levels within a low-relief watershed can readily impact SW-GW interactions. The calibrated LWD flow models and observed stream and streambed NO 3 concentrations were used to predict temporal variations in streambed NO 3 removal in response to dynamic SW-GW exchange. NO 3 removal rates underwent slow seasonal changes, but also underwent rapid changes in response to high-flow events. These findings suggest that increased temporal variability of SW-GW exchange in low-order, low-relief watersheds may be a factor contributing their more efficient removal of NO 3 .

Indiana↗
USGS2017

A new parameterization for integrated population models to document amphibian reintroductions

Managers are increasingly implementing reintroduction programs as part of a global effort to alleviate amphibian declines. Given uncertainty in factors affecting populations and a need to make recurring decisions to achieve objectives, adaptive management is a useful component of these efforts. A major impediment to the estimation of demographic rates often used to parameterize and refine decision-support models is that life-stage-specific monitoring data are frequently sparse for amphibians. We developed a new parameterization for integrated population models to match the ecology of amphibians and capitalize on relatively inexpensive monitoring data to document amphibian reintroductions. We evaluate the capability of this model by fitting it to Oregon spotted frog ( Rana pretiosa ) monitoring data collected from 2007 to 2014 following their reintroduction within the Klamath Basin, Oregon, USA. The number of egg masses encountered and the estimated adult and metamorph abundances generally increased following reintroduction. We found that survival probability from egg to metamorph ranged from 0.01 in 2008 to 0.09 in 2009 and was not related to minimum spring temperatures, metamorph survival probability ranged from 0.13 in 2010–2011 to 0.86 in 2012–2013 and was positively related to mean monthly temperatures (logit-scale slope = 2.37), adult survival probability was lower for founders (0.40) than individuals recruited after reintroduction (0.56), and the mean number of egg masses per adult female was 0.74. Our study is the first to test hypotheses concerning Oregon spotted frog egg-to-metamorph and metamorph-to-adult transition probabilities in the wild and document their response at multiple life stages following reintroduction. Furthermore, we provide an example to illustrate how the structure of our integrated population model serves as a useful foundation for amphibian decision-support models within adaptive management programs. The integration of multiple, but related, data sets has an advantage of being able to estimate complex ecological relationships across multiple life stages, offering a modeling framework that accommodates uncertainty, enforces parsimony, and ensures all model parameters can be confronted with monitoring data.

Ecological Applications↗
USGS2019

Survival cost to relocation does not reduce population self‐sustainability in an amphibian

Relocations are increasingly popular among wildlife managers despite often low rates of relocation success in vertebrates. In this context, understanding the influence of extrinsic (e.g., relocation design, habitat characteristics) and intrinsic factors (e.g., age and sex) on demographic parameters, such as survival, that regulate the dynamics of relocated populations is critical to improve relocation protocols and better predict relocation success. We investigated survival in naturally established and relocated populations of yellow‐bellied toads ( Bombina variegata ), an amphibian that was nearly extinct in Belgium by the late 1980s. We quantified survival at three ontogenetic stages (juvenile, subadult, and adult) in the relocated population, the source population, and a control population. In the relocated population, we quantified survival in captive bred individuals and their locally born descendants. Then, using simulations, we examined how survival cost to relocation affects the self‐sustainability of the relocated population. We showed that survival at juvenile and subadult stages was relatively similar in all populations. In contrast, relocated adult survival was lower than adult survival in the source and control populations. Despite this, offspring of relocated animals (the next generation, regardless of life stage) survived at similar rates to individuals in the source and control populations. Simulations revealed that the relocated population was self‐sustaining under different scenarios and that the fate (e.g., stability or increase) of the simulated populations was highly dependent on the fecundity of relocated adults and their offspring. To summarize, our results indicate that survival in relocated individuals is lower than in non‐relocated individuals but that this cost (i.e., reduced survival) disappears in the second generation. A finer understanding of how relocation affects demographic processes is an important step in improving relocation success of amphibians and other animals.

Northern France and Belgium↗
USGS2025

How to model a new invader? US-invaded range models outperform global or combined range models after 100 occurrences

Invasive species are an economic and ecological burden, and efforts to limit their impact are greatly improved with reliable maps based on species distribution models (SDMs). However, the potential distribution of new invaders is difficult to anticipate because they are still spreading with few observations in their invaded habitat. Therefore, an accepted practice in predicting the distribution of invasive species has been to incorporate habitat information from its entire geographic distribution (invaded and native ranges) into SDMs. Yet, this approach, due to niche shifts, niche expansions, and data deficiencies, commonly misrepresents where an invasive species is found in its new range. Here, we use time series records (invasion stages) from 13 invasive plant species in North America to explore the tension between modeling invasive species using global range and invaded range data and to determine if there is a “tipping point” at which one SDM strategy performs better than the other in predicting the ultimate distribution. At the earliest invasion stage, models developed using both invaded range and global occurrences on average performed better and had less variability across species than other model strategies at this stage. However, after as few as 100 observations of an invasive plant had been made, US-invaded range models, on average, outperformed global range models and models that combined occurrences. By building models with global and US-scale predictors, we show that higher performance of invaded range models was in part because of greater data quality at the invaded-range scale. Our work demonstrates that after relatively few observations of an invasive species in its invaded range, it is more accurate to model its potential distribution using only information from the invaded range while disregarding information from other regions. This work develops a robust and comprehensive approach to modeling novel distributions of newly observed invasive species.

North America↗
USGS2008

Design of a naturalized flow regime—An example from the Lower Missouri River, USA

group of river managers, stakeholders, and scientists met during summer 2005 to design a more naturalized flow regime for the Lower Missouri River (LMOR). The objective was to comply with requirements under the U.S. Endangered Species Act to support reproduction and survival of threatened and endangered species, with emphasis on the endangered pallid sturgeon ( Scaphirhynchus albus ), while minimizing negative effects to existing social and economic benefits of prevailing river management. Specific hydrograph requirements for pallid sturgeon reproduction are unknown, hence much of the design process was based on features of the natural flow regime. Environmental flow components (EFCs) extracted from the reference natural flow regime were used to design and assess performance of alternative flow regimes. The design process incorporated a primary stage in which conceptual hydrographs were developed and assessed for their general ecological and social-economic performance. The second stage accounted for hydroclimatic variation by coding the conceptual hydrographs into reservoir release rules, adding constraints for downstream flooding and low-storage precludes, and running the rules through 100 years of hydroclimatic simulation. The output flow regimes were then evaluated for presumed ecological benefits based on how closely they resembled EFCs in the reference natural flow regime. Flow regimes also were assessed for social-economic cost indicators, including days of flooding of low-lying agricultural land, days over flood stage, and storage levels in system reservoirs. Our experience with flow-regime design on the LMOR underscored the lack of confidence the stakeholders place in the value of the natural flow regime as a measure of ecosystem benefit in the absence of fundamental scientific documentation. Stakeholders desired proof of ecological benefits commensurate with the certainty of economic losses. We also gained insight into the processes of integrating science into a collaborative management exercise. Although the 2005 collaborative effort failed to reach a consensus among stakeholders on a naturalized flow regime, the process was successful in pilot-testing a design approach; it helped focus scienctific efforts on key knowledge gaps; and it demonstrated the potential for collaborations among scientists, stakeholders, and managers in river management decision making.

Lower Missouri River↗
USGS2021

Demography of the Oregon spotted frog along a hydrologically modified river

Altered flow regimes can contribute to dissociation between life history strategies and environmental conditions, leading to reduced persistence reported for many wildlife populations inhabiting regulated rivers. The Oregon spotted frog ( Rana pretiosa ) is a threatened species occurring in floodplains, ponds, and wetlands in the Pacific Northwest with a core range in Oregon, USA. All life stages of R. pretiosa are reliant on aquatic habitats, and inundation patterns across the phenological timeline can have implications for population success. We conducted capture–mark–recapture (CMR) sampling of adult and subadult R. pretiosa at three sites along the Deschutes River downstream from two dams that regulate flows. We related the seasonal extent of inundated habitat at each site to monthly survival probabilities using a robust design CMR model. We also developed matrix projection models to simulate population dynamics into the future under current river flows. Monthly survival was strongly associated with the extent and variability of inundated habitat, suggesting some within-season fluctuations at higher water levels could be beneficial. Seasonal survival was lowest in the winter for all three sites, owing to limited water availability and the greater number of months within this season relative to other seasons. Population growth for the two river-connected sites was most strongly linked to adult survival, whereas population growth at the river-disconnected site was most strongly tied to survival in juvenile stages. This research identifies population effects of seasonally limited water and highlights conservation potential of enhancing survival of particularly influential life stages.

Oregon↗
USGS2024

A comparative framework to develop transferable species distribution models for animal telemetry data

Species distribution models (SDMs) have become increasingly popular for making ecological inferences, as well as predictions to inform conservation and management. In predictive modeling, practitioners often use correlative SDMs that only evaluate a single spatial scale and do not account for differences in life stages. These modeling decisions may limit the performance of SDMs beyond the study region or sampling period. Given the increasing desire to develop transferable SDMs, a robust framework is necessary that can account for known challenges of model transferability. Here, we propose a comparative framework to develop transferable SDMs, which was tested using satellite telemetry data from green turtles ( Chelonia mydas ). This framework is characterized by a set of steps comparing among different models based on (1) model algorithm (e.g., generalized linear model vs. Gaussian process regression) and formulation (e.g., correlative model vs. hybrid model), (2) spatial scale, and (3) accounting for life stage. SDMs were fitted as resource selection functions and trained on data from the Gulf of Mexico with bathymetric depth, net primary productivity, and sea surface temperature as covariates. Independent validation datasets from Brazil and Qatar were used to assess model transferability. A correlative SDM using a hierarchical Gaussian process regression (HGPR) algorithm exhibited greater transferability than a hybrid SDM using HGPR, as well as correlative and hybrid forms of hierarchical generalized linear models. Additionally, models that evaluated habitat selection at the finest spatial scale and that did not account for life stage proved to be the most transferable in this study. The comparative framework presented here may be applied to a variety of species, ecological datasets (e.g., presence-only, presence-absence, mark-recapture), and modeling frameworks (e.g., resource selection functions, step selection functions, occupancy models) to generate transferable predictions of species–habitat associations. We expect that SDM predictions resulting from this comparative framework will be more informative management tools and may be used to more accurately assess climate change impacts on a wide array of taxa.

Ecosphere↗
USGS2017

A life cycle database for parasitic acanthocephalans, cestodes, and nematodes

Parasitologists have worked out many complex life cycles over the last ~150 years, yet there have been few efforts to synthesize this information to facilitate comparisons among taxa. Most existing host-parasite databases focus on particular host taxa, do not distinguish final from intermediate hosts, and lack parasite life-history information. We summarized the known life cycles of trophically transmitted parasitic acanthocephalans, cestodes, and nematodes. For 973 parasite species, we gathered information from the literature on the hosts infected at each stage of the parasite life cycle (8510 host-parasite species associations), what parasite stage is in each host, and whether parasites need to infect certain hosts to complete the life cycle. We also collected life-history data for these parasites at each life cycle stage, including 2313 development time measurements and 7660 body size measurements. The result is the most comprehensive data summary available for these parasite taxa. In addition to identifying gaps in our knowledge of parasite life cycles, these data can be used to test hypotheses about life cycle evolution, host specificity, parasite life-history strategies, and the roles of parasites in food webs.

Ecology↗
USGS1993

The effects of low pH and elevated aluminum on yellowstone cutthroat trout (Oncorhynchus clarki bouvieri)

Although acid deposition is not considered a problem in the western United States, surface waters in high elevations and fish inhabiting these waters may be vulnerable to acidification. This study examined the sensitivity of a western salmonid to acid and aluminum stress. Yellowstone cutthroat trout ( Oncorhynchus clarki bouvieri ; YSC) were exposed for 7 d during each of four early life stages, or continuously from fertilization to 40 d post-hatch, to decreased pH and elevated Al. We monitored survival, growth, whole-body ion content, and behavior of the exposed fish. Sensitivity of early life stages of YSC may be expressed by survival or by survival and sublethal effects. In our study, eggs were the most sensitive life stage of YSC to low pH if survival alone was considered. However, the sublethal effects on growth, tissue ion content, and behavior revealed the alevins and swim-up larvae were more sensitive to reduced pH and increased Al than eggs or eyed embryos. We also observed that survival was significantly decreased if YSC were exposed to pH 6.0 and 50 μg Al per liter continuously from fertilization to 40 d post-hatch.

Wyoming↗