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USGS2026

Functional restructuring of the global soil microbiome under multiple stressors

Microbes, as the planet’s most abundant and diverse organisms, drive soil functions globally and are vulnerable to environmental stressors triggered by global change. Yet, knowledge regarding the impacts of multiple environmental stressors on their functional profiles as well as the consequences for soil functionality largely remains unknown. Here, we analyze two global-scale datasets including information on soil metagenomics and multiple environmental stressors. We find that across terrestrial ecosystems worldwide, up to 60% of all functional genes significantly shift when soil microbes experience the high-level of concurrent stressors. In this regard, the relative abundances of genes involved in microbial growth are negatively linked to the increasing number of stressors. Conversely, those genes linked to stress resistance and energy production exhibit positive responses. Taken together, our findings highlight a significant restructuring of global soil functional microbiomes in response to multiple environmental stressors. Consequently, such restructuring drives community-level shifts in matter and energy reallocations, thereby impacting the maintenance of soil functionality under the projected global change.

Nature Communications↗

USGS2022

In situ recording of Mars soundscape

Prior to the Perseverance rover landing, the acoustic environment of Mars was unknown. Models predicted that: (i) atmospheric turbulence changes at centimeter scales or smaller at the point where molecular viscosity converts kinetic energy into heat 1 , (ii) the speed of sound varies at the surface with frequency 2,3 , and (iii) high frequency waves are strongly attenuated with distance in CO 2 2–4 . However, theoretical models were uncertain because of a lack of experimental data at low pressure, and the difficulty to characterize turbulence or attenuation in a closed environment. Here using Perseverance microphone recordings, we present the first characterization of Mars’ acoustic environment and pressure fluctuations in the audible range and beyond, from 20 Hz to 50 kHz. We find that atmospheric sounds extend measurements of pressure variations down to 1,000 times smaller scales than ever observed before, revealing a dissipative regime extending over 5 orders of magnitude in energy. Using point sources of sound (Ingenuity rotorcraft, laser-induced sparks), we highlight two distinct values for the speed of sound that are ~10 m/s apart below and above 240 Hz, a unique characteristic of low-pressure CO 2 -dominated atmosphere. We also provide the acoustic attenuation with distance above 2 kHz, allowing us to elucidate the large contribution of the CO 2 vibrational relaxation in the audible range. These results establish a ground truth for modelling of acoustic processes, which is critical for studies in atmospheres like Mars and Venus ones.

Nature↗

USGS2021

Energetic and health effects of protein overconsumption constrain dietary adaptation in an apex predator

Studies of predator feeding ecology commonly focus on energy intake. However, captive predators have been documented to selectively feed to optimize macronutrient intake. As many apex predators experience environmental changes that affect prey availability, limitations on selective feeding can affect energetics and health. We estimated the protein:fat ratio of diets consumed by wild polar bears using a novel isotope-based approach, measured protein:fat ratios selected by zoo polar bears offered dietary choice and examined potential energetic and health consequences of overconsuming protein. Dietary protein levels selected by wild and zoo polar bears were low and similar to selection observed in omnivorous brown bears, which reduced energy intake requirements by 70% compared with lean meat diets. Higher-protein diets fed to zoo polar bears during normal care were concurrent with high rates of mortality from kidney disease and liver cancer. Our results suggest that polar bears have low protein requirements and that limitations on selective consumption of marine mammal blubber consequent to climate change could meaningfully increase their energetic costs. Although bear protein requirements appear lower than those of other carnivores, the energetic and health consequences of protein overconsumption identified in this study have the potential to affect a wide range of taxa.

Scientific Reports↗

USGS2023

Expanding our view of the cold-water coral niche and accounting of the ecosystem services of the reef habitat

Coral reefs are iconic ecosystems that support diverse, productive communities in both shallow and deep waters. However, our incomplete knowledge of cold-water coral (CWC) niche space limits our understanding of their distribution and precludes a complete accounting of the ecosystem services they provide. Here, we present the results of recent surveys of the CWC mound province on the Blake Plateau off the U.S. east coast, an area of intense human activity including fisheries and naval operations, and potentially energy and mineral extraction. At one site, CWC mounds are arranged in lines that total over 150 km in length, making this one of the largest reef complexes discovered in the deep ocean. This site experiences rapid and extreme shifts in temperature between 4.3 and 10.7 °C, and currents approaching 1 m s −1 . Carbon is transported to depth by mesopelagic micronekton and nutrient cycling on the reef results in some of the highest nitrate concentrations recorded in the region. Predictive models reveal expanded areas of highly suitable habitat that currently remain unexplored. Multidisciplinary exploration of this new site has expanded understanding of the cold-water coral niche, improved our accounting of the ecosystem services of the reef habitat, and emphasizes the importance of properly managing these systems.

Scientific Reports↗

USGS2023

Supplying ecosystem services on US rangelands

Rangelands comprise 40% of the conterminous United States and they supply essential ecosystem services to society. A scenario assessment was conducted to determine how accelerating biophysical and societal drivers may modify their future availability. Four scenarios emerged: two may maintain rural communities by sustaining the prevailing ecosystem service of beef cattle production, and two may transform rural communities through expansion of renewable energy technologies and infusion of external capital from amenity land sales. Collaborative organizations representing diverse societal sectors may most effectively identify and manage trade-offs among ecosystem service availability, and equitably prioritize food and energy security, environmental quality and cultural identity.

Nature Sustainability↗

USGS2026

Practitioners perceptions of biodiversity-relevant criteria for solar suitability analyses in the United States

Acceleration of large-scale solar energy deployment can pose competition for land with biodiversity conservation areas. Solar suitability analyses (SSAs) help identify low-conflict zones for solar development, yet limited work defines which biodiversity-relevant criteria (BRCs) are essential for SSAs or whether supporting data are available. We convened a United States-based Delphi panel of practitioners with expertise in biodiversity and renewable energy to identify BRCs that are essential across SSAs (‘core’) and data- or scale-limited (‘peripheral’). Practitioners identified 16 core and 13 peripheral BRCs. Core criteria primarily aligned with regulatory frameworks, while peripheral BRCs reflected context-dependent ecological attributes lacking consistent and scalable data. Open-access data were available for 14 core criteria across 10 databases. Our assessment of US-based SSAs revealed that 10 included core BRCs. Our findings indicate a need for improved access to fine-scale biodiversity data and coordination with agencies to improve SSAs.

npj Biodiversity↗

USGS2015

Onshore industrial wind turbine locations for the United States up to March 2014

Wind energy is a rapidly growing form of renewable energy in the United States. While summary information on the total amounts of installed capacity are available by state, a free, centralized, national, turbine-level, geospatial dataset useful for scientific research, land and resource management, and other uses did not exist. Available in multiple formats and in a web application, these public domain data provide industrial-scale onshore wind turbine locations in the United States up to March 2014, corresponding facility information, and turbine technical specifications. Wind turbine records have been collected and compiled from various public sources, digitized or position verified from aerial imagery, and quality assured and quality controlled. Technical specifications for turbines were assigned based on the wind turbine make and model as described in public literature. In some cases, turbines were not seen in imagery or turbine information did not exist or was difficult to obtain. Uncertainty associated with these is recorded in a confidence rating.

Scientific Data↗

USGS2018

The metabolic regimes of 356 rivers in the United States

A national-scale quantification of metabolic energy flow in streams and rivers can improve understanding of the temporal dynamics of in-stream activity, links between energy cycling and ecosystem services, and the effects of human activities on aquatic metabolism. The two dominant terms in aquatic metabolism, gross primary production (GPP) and aerobic respiration (ER), have recently become practical to estimate for many sites due to improved modeling approaches and the availability of requisite model inputs in public datasets. We assembled inputs from the U.S. Geological Survey and National Aeronautics and Space Administration for October 2007 to January 2017. We then ran models to estimate daily GPP, ER, and the gas exchange rate coefficient for 356 streams and rivers across the continental United States. We also gathered potential explanatory variables and spatial information for cross-referencing this dataset with other datasets of watershed characteristics. This dataset offers a first national assessment of many-day time series of metabolic rates for up to 9 years per site, with a total of 490,907 site-days of estimates.

Scientific Data↗

USGS2015

Shifts in the eruptive styles at Stromboli in 2010–2014 revealed by ground-based InSAR data

Ground-Based Interferometric Synthetic Aperture Radar (GBInSAR) is an efficient technique for capturing short, subtle episodes of conduit pressurization in open vent volcanoes like Stromboli (Italy), because it can detect very shallow magma storage, which is difficult to identify using other methods. This technique allows the user to choose the optimal radar location for measuring the most significant deformation signal, provides an exceptional geometrical resolution, and allows for continuous monitoring of the deformation. Here, we present and model ground displacements collected at Stromboli by GBInSAR from January 2010 to August 2014. During this period, the volcano experienced several episodes of intense volcanic activity, culminated in the effusive flank eruption of August 2014. Modelling of the deformation allowed us to estimate a source depth of 482 ± 46 m a.s.l. The cumulative volume change was 4.7 ± 2.6 × 105 m3. The strain energy of the source was evaluated 3–5 times higher than the surface energy needed to open the 6–7 August eruptive fissure. The analysis proposed here can help forecast shifts in the eruptive style and especially the onset of flank eruptions at Stromboli and at similar volcanic systems (e.g. Etna, Piton de La Fournaise, Kilauea).

Stromboli↗

USGS2021

Water–rock interaction and the concentrations of major, trace, and rare earth elements in hydrocarbon-associated produced waters of the United States

Studies of co-produced waters from hydrocarbon extraction across multiple energy-producing basins have generally focused on major ions or a few select tracers, and studies that examine trace elements and involve laboratory experiments have generally been basin specific. Here, new perspective is sought through a broad analysis of concentration data for 26 elements from three hydrocarbon well types using the U.S. Geological Survey National Produced Waters Geochemical Database (v2.3). Those data are compared to leachates (water, hydrochloric acid, and artificial brine) from 12 energy-resource related shales from across the United States. Both lower pH and higher ionic strength were associated with greater concentrations of many trace elements in produced waters. However, individual effects were difficult to distinguish because higher ionic strengths drive decreases in pH. Water–rock interactions in the leaching experiments generally replicated produced water concentrations for trace elements including Al, As, Cd, Co, Cu, Mo, Ni, Pb, Sb, Si, and Zn. Enhanced middle rare earth element (REE) mobilization relative to shale REE content occurred with low pH leachates. Produced water concentrations of Li, Sr, and Ba were not replicated by the leaching experiments. Patterns of high Li, Sr, and Ba concentrations and ratios relative to other elements across produced waters types indicate controls on these elements in many settings related to pore space pools of salts, brines, and ion-exchange sites affected by diagenetic processes. The size of those pools is diluted and masked by other water–rock interaction processes at the water–rock ratios necessitated by laboratory experiments. The results broadly link water–rock interaction processes and environmental patterns across a wide variety of produced waters and host formations and thus provide context for trace element data from other environmental and laboratory studies of such waters.

Environmental Science: Processes & Impacts↗

USGS2003

Physiological characteristics of wild Atlantic salmon post-smolts during estuarine and coastal migration

Changes were measured in some of the major physiological variables associated with seawater adaptability, growth and energetics in wild Atlantic salmon Salmo salar smolts and post-smolts migrating from the river and through the estuary, fjord and coastal areas in the River Orkla and the Trondheimsfjord, Norway during late May to early June. Gill Na+,K+-ATPase activity increased to levels of 12-16 ??mol ADP mg protein-1 h -1 in post-smolts caught in higher salinity zones, probably representing long-term levels of Atlantic salmon post-smolts in oceanic conditions. Muscle moisture was regulated within narrow limits (77.7-78.7%) in fish from all zones during both years, suggesting that post-smolts adapt to marine conditions without any long-term disturbance of hydro-mineral balance. Lipid and glycogen content showed a general trend towards depletion from the river, through the fjord and into the ocean. There was, however, no significant change in protein content. The present results confirm that smolts are naturally 'energy deficient' during downstream migration, and suggest that post-smolts also mobilize energy reserves during their early marine phase, while protein is allocated for somatic growth. Plasma growth hormone (GH) levels increased transiently during passage through the estuary and fjord, with lower levels observed in post-smolts caught off-shore, i.e. in fish which were feeding on marine prey and had adapted to the marine environment. These physiological changes may confer substantial selective advantages during the critical early marine phase of anadromous salmonids, and hence are adaptive for long-term survival in sea water. ?? 2003 The Fisheries Society of the British Isles.

Journal of Fish Biology↗

USGS2002

Arctic and boreal ecosystems of western North America as components of the climate system

Synthesis of results from several Arctic and boreal research programmes provides evidence for the strong role of high-latitude ecosystems in the climate system. Average surface air temperature has increased 0.3??C per decade during the twentieth century in the western North American Arctic and boreal forest zones. Precipitation has also increased, but changes in soil moisture are uncertain. Disturbance rates have increased in the boreal forest; for example, there has been a doubling of the area burned in North America in the past 20 years. The disturbance regime in tundra may not have changed. Tundra has a 3-6-fold higher winter albedo than boreal forest, but summer albedo and energy partitioning differ more strongly among ecosystems within either tundra or boreal forest than between these two biomes. This indicates a need to improve our understanding of vegetation dynamics within, as well as between, biomes. If regional surface warming were to continue, changes in albedo and energy absorption would likely act as a positive feedback to regional warming due to earlier melting of snow and, over the long term, the northward movement of treeline. Surface drying and a change in dominance from mosses to vascular plants would also enhance sensible heat flux and regional warming in tundra. In the boreal forest of western North America, deciduous forests have twice the albedo of conifer forests in both winter and summer, 50-80% higher evapotranspiration, and therefore only 30-50% of the sensible heat flux of conifers in summer. Therefore, a warming-induced increase in fire frequency that increased the proportion of deciduous forests in the landscape, would act as a negative feedback to regional warming. Changes in thermokarst and the aerial extent of wetlands, lakes, and ponds would alter high-latitude methane flux. There is currently a wide discrepancy among estimates of the size and direction of CO2 flux between high-latitude ecosystems and the atmosphere. These discrepancies relate more strongly to the approach and assumptions for extrapolation than to inconsistencies in the underlying data. Inverse modelling from atmospheric CO2 concentrations suggests that high latitudes are neutral or net sinks for atmospheric CO2, whereas field measurements suggest that high latitudes are neutral or a net CO2 source. Both approaches rely on assumptions that are difficult to verify. The most parsimonious explanation of the available data is that drying in tundra and disturbance in boreal forest enhance CO2 efflux. Nevertheless, many areas of both tundra and boreal forests remain net sinks due to regional variation in climate and local variation in topographically determined soil moisture. Improved understanding of the role of high-latitude ecosystems in the climate system requires a concerted research effort that focuses on geographical variation in the processes controlling land-atmosphere exchange, species composition, and ecosystem structure. Future studies must be conducted over a long enough time-period to detect and quantify ecosystem feedbacks.

Global Change Biology↗

USGS2001

Leaf conductance decreased under free-air CO2 enrichment (FACE) for three perennials in the Nevada desert

A common response of plants to elevated atmospheric CO 2 concentration (CO 2 ) is decreased leaf conductance. Consequently, leaf temperature is predicted to increase under elevated CO 2 . Diurnal patterns of leaf conductance and temperature were measured for three desert perennials, the C 3 shrub Larrea tridentata , C 3 tussock grass Achnatherum hymenoides and C 4 tussock grass Pleuraphis rigida , at the Nevada Desert FACE facility. Measurements were made on ambient and c . 550 µmol mol −1 CO 2 plots through both a wet and dry year. Reductions in conductance were 35%, 20% and 13% for Pleuraphis , Achnatherum and Larrea , respectively. Decreased conductance occurred throughout the day only for Pleuraphis . Both C 3 species had smaller CO 2 effects during dry periods than wet. Leaf temperature did not differ significantly between elevated and ambient CO 2 for any species. Comparisons of blower-control and nonring plots indicated that the FACE apparatus did not confound our results. All three species exhibited decreased leaf conductance under elevated CO 2 , although reductions were not uniform during the day or among years. Nonetheless, leaf energy balance was only minimally changed for these microphyllous desert perennials.

Nevada↗

USGS2004

One-dimensional wave bottom boundary layer model comparison: Specific eddy viscosity and turbulence closure models

Six one-dimensional-vertical wave bottom boundary layer models are analyzed based on different methods for estimating the turbulent eddy viscosity: Laminar, linear, parabolic, k —one equation turbulence closure, k−ε —two equation turbulence closure, and k−ω —two equation turbulence closure. Resultant velocity profiles, bed shear stresses, and turbulent kinetic energy are compared to laboratory data of oscillatory flow over smooth and rough beds. Bed shear stress estimates for the smooth bed case were most closely predicted by the k−ω model. Normalized errors between model predictions and measurements of velocity profiles over the entire computational domain collected at 15° intervals for one-half a wave cycle show that overall the linear model was most accurate. The least accurate were the laminar and k−ε models. Normalized errors between model predictions and turbulence kinetic energy profiles showed that the k−ω model was most accurate. Based on these findings, when the smallest overall velocity profile prediction error is required, the processing requirements and error analysis suggest that the linear eddy viscosity model is adequate. However, if accurate estimates of bed shear stress and TKE are required then, of the models tested, the k−ω model should be used.

Journal of Waterway, Port, Coastal and Ocean Engin↗

USGS1997

Assessment of liquefaction potential during earthquakes by Arias intensity

An Arias intensity approach to assess the liquefaction potential of soil deposits during earthquakes is proposed, using an energy-based measure of the severity of earthquake-shaking recorded on seismograms of the two horizontal components of ground motion. Values representing the severity of strong motion at depth in the soil column are associated with the liquefaction resistance of that layer, as measured by in situ penetration testing (SPT, CPT). This association results in a magnitude-independent boundary that envelopes initial liquefaction of soil in Arias intensity-normalized penetration resistance space. The Arias intensity approach is simple to apply and has proven to be highly reliable in assessing liquefaction potential. The advantages of using Arias intensity as a measure of earthquake-shaking severity in liquefaction assessment are: Arias intensity is derived from integration of the entire seismogram wave form, incorporating both the amplitude and duration elements of ground motion; all frequencies of recorded motion are considered; and Arias intensity is an appropriate measure to use when evaluating field penetration test methodologies that are inherently energy-based. Predictor equations describing the attenuation of Arias intensity as a function of earthquake magnitude and source distance are presented for rock, deep-stiff alluvium, and soft soil sites.

Journal of Geotechnical and Geoenvironmental Engin↗

USGS2012

11 things a geologist thinks an engineer should know about carbonate beaches

This is a review of the geological aspects of carbonate beaches that a geologist thinks may be useful for an engineer. Classical geologic problems of carbonate beaches, for example how ancient examples are recognized in rock sequences, are of little interest to engineers. Geologists not involved in engineering problems may find it difficult to know what an engineer should understand about carbonate beaches. Nevertheless, there are at least eleven topics that are potentially very useful for engineers to keep in mind. These eleven are chosen with as much thought going into what has been omitted as has been given to the eleven included topics. Some qualifications are in order: First, this paper does not discuss certain kinds of carbonate shorelines that are beyond the scope of engineering issues. For example, this review does not discuss very high-energy carbonate boulder beaches. These beaches are comprised of pieces of carbonate material ganging in size from ten centimeters to meters. Typically, these are high-energy storm deposits formed from pieces of either eroded carbonate rock or other large carbonate pieces such as pieces of large corals. This paper focuses on sand-sized (0.0625–2.0 mm) coastal carbonate deposits. Second, offshore beaches will not be discussed. There are many carbonate beaches that form on banks or shoals exposed at low tide, but our discussion is confined to what most people think of when they go to some tropical island and/or resort and walk out to lay on the beach. Third, this paper does not consider mixed carbonate/quartz sand beaches. While mixed beaches are common, only the end member of purely carbonate sand beaches is considered. Fourth, there will be no order of preference of the eleven topics. And lastly, these eleven topics are not consensus items. These are simply one geologist s thoughts about the aspects of carbonate beaches that would be useful for engineering colleagues to keep in mind. Where possible, general reference is made to textbooks that will lead the reader to extensive literature on carbonate sediments. Several of the topics are not so broad as to have had a large general treatment in texts, and in those cases some original literature is cited.

Conference Paper↗

USGS2012

Modeling nearshore morphological evolution at seasonal scale

A process-based model is compared with field measurements to test and improve our ability to predict nearshore morphological change at seasonal time scales. The field experiment, along the dissipative beaches adjacent to Grays Harbor, Washington USA, successfully captured the transition between the high-energy erosive conditions of winter and the low-energy beach-building conditions typical of summer. The experiment documented shoreline progradation on the order of 20 m and as much as 175 m of onshore bar migration. Significant alongshore variability was observed in the morphological response of the sandbars over a 4 km reach of coast. A detailed sensitivity analysis suggests that the model results are more sensitive to adjusting the sediment transport associated with asymmetric oscillatory wave motions than to adjusting the transport due to mean currents. Initial results suggest that alongshore variations in the initial bathymetry are partially responsible for the observed alongshore variable morphological response during the experiment. Copyright ASCE 2006.

Conference Paper↗

USGS2012

Tsunami inundation and sediment transport in vicinity of coastal mangrove forest

Field measurements from Sumatra of tsunami wave height, erosion and deposition form a comprehensive data set that is tested against the Delft3D tsunami inundation and sediment transport model. Relative agreement between measured and modeled maximum water levels and sediment erosion and accumulation provides confidence that the model is reasonably characterizing the important processes of tsunami inundation. Adding a component to account for vegetation, the model is used to explore the effects of fringing mangrove forests on tsunami inundation and sedimentation. In model experiments, mangrove forests modify the water levels and flow speeds reached during tsunami inundation. Simulations with a mangrove forest result in sedimentation in the forest and not erosion, as occurs in the base case with no forest. This difference in sedimentation is important because the change in profile shape increases wave energy reflection off the beach and decreases wave energy penetration onto land.

Conference Paper↗