Geology Reports⌕ Search

SEARCH · Geology Reports

Results for “Ecology Indicators”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,585 records · Page 88Linked to original sources
USGS2022

Spatially explicit management of genetic diversity using ancestry probability surfaces

1. Ecological restoration and conservation efforts are increasing worldwide and the management of intraspecific genetic variation in plants and animals, an important component of biodiversity, is increasingly valued. As a result, tailorable, spatially explicit approaches to map genetic variation are needed to support decision-making and management frameworks related to the recovery of threatened and endangered species and the maintenance of genetic resources in species utilized by humans, such as for restoration or agricultural purposes. 2. Here, we describe and demonstrate a workflow to spatially interpolate patterns of genetic differentiation using novel functions in the R package POPMAPS ( Pop ulation M anagement using A ncestry P robability S urfaces). Our approach uses empirical genetic data to estimate ancestry coefficients across a user-defined landscape correlated with patterns of differentiation in the focal species. The resulting surface, which we term the ancestry probability surface, includes two components: hard population boundaries and estimations of uncertainty that represent confidence in population assignments (i.e., ancestry probabilities). 3. An ancestry probability surface developed for Hilaria jamesii , an important graminoid utilized in restoration across the western United States, demonstrates the functionality of POPMAPS . Genetic distances among empirical sites correlated better with least-cost distances across suitable habitat than with geographic distances, informing the surface over which the interpolation was conducted (i.e., a model indicating habitat suitability). A jackknifing procedure identified parameter values resulting in robust population assignments across the species’ range, which were utilized in downstream analyses to estimate ancestry coefficients from empirical data. Ancestry coefficients were translated into ancestry probabilities, which tended to be low for cells that were intermediate in distance between empirical sampling locations representing different populations or when influenced by empirical sampling locations with mixed genetic ancestry. 4. POPMAPS allows users to tailor parameter values and analytical approaches and thereby incorporate species-specific biological characteristics and desired levels of uncertainty into maps illustrating patterns of genetic differentiation. Ancestry probability surfaces may be used to guide management or investigate further ecological or evolutionary hypotheses. We discuss how maps produced by POPMAPS can inform multiple management challenges including species recovery planning and the utilization of commonly used species in restoration.

Methods in Ecology and Evolution↗
USGS2016

Groundwater exchanges near a channelized versus unmodified stream mouth discharging to a subalpine lake

The terminus of a stream flowing into a larger river, pond, lake, or reservoir is referred to as the stream-mouth reach or simply the stream mouth . The terminus is often characterized by rapidly changing thermal and hydraulic conditions that result in abrupt shifts in surface water/groundwater (sw/gw) exchange patterns, creating the potential for unique biogeochemical processes and ecosystems. Worldwide shoreline development is changing stream-lake interfaces through channelization of stream mouths, i.e., channel straightening and bank stabilization to prevent natural meandering at the shoreline. In the central Sierra Nevada (USA), Lake Tahoe's shoreline has an abundance of both “unmodified” (i.e., not engineered though potentially impacted by broader watershed engineering) and channelized stream mouths. Two representative stream mouths along the lake's north shore, one channelized and one unmodified, were selected to compare and contrast water and heat exchanges. Hydraulic and thermal properties were monitored during separate campaigns in September 2012 and 2013 and sw/gw exchanges were estimated within the stream mouth-shoreline continuum. Heat-flow and water-flow patterns indicated clear differences in the channelized versus the unmodified stream mouth. For the channelized stream mouth, relatively modulated, cool-temperature, low-velocity longitudinal streambed flows discharged offshore beneath warmer buoyant lakeshore water. In contrast, a seasonal barrier bar formed across the unmodified stream mouth, creating higher-velocity subsurface flow paths and higher diurnal temperature variations relative to shoreline water. As a consequence, channelization altered sw/gw exchanges potentially altering biogeochemical processing and ecological systems in and near the stream mouth.

California, Nevada↗
USGS2022

Sea otters in a California estuary: Detecting temporal and spatial dynamics with volunteer monitoring

Volunteer monitoring can support conservation of imperiled wildlife, by providing higher resolution data in space and time than those available from professional scientists. However, concerns have been raised that data collected by amateurs are inaccurate or inconsistent and thus do not allow for robust detection of spatial or temporal trends. We evaluated the rigor and value of volunteer monitoring data for one iconic wildlife species, the southern sea otter ( Enhydra lutris nereis ), in Elkhorn Slough estuary in central California, USA, and explored whether volunteer monitoring could provide added value to complement limited professional surveys. First, we compiled and analyzed sea otter counts taken on daily ecotourist boat trips along the estuary, and then compared temporal patterns to data collected by professional scientists tasked with monitoring this federally listed species. Second, we analyzed data on sea otter abundance, habitat use, and behavior collected by a team of trained volunteers, the Elkhorn Slough Reserve Otter Monitoring Program. Overall, we demonstrated the ability to detect important ecological patterns relevant to sea otter conservation and wetland habitat management using volunteer-derived datasets. Long-term trends and inter-annual variability were similar between professional agency monitoring data and volunteer datasets. Moreover, the much higher frequency of volunteer observations allowed for seasonal and tidal dynamics to be detected that could not be revealed by less frequent professional monitoring. We found higher sea otter abundance in the estuary in spring–summer, indicating seasonality in use of the estuary. We detected differences in habitat use of the estuary between higher and lower tides, and greater frequency of foraging at low tide and in certain areas. Volunteer observations revealed fine-scale differences in habitat use: eelgrass beds were used much more heavily than adjacent areas only a few meters away. Volunteer data can thus provide critical information about coastal habitat use and behavior that can improve conservation strategies for threatened wildlife species.

California↗
USGS2026

Integrating climate data and river modeling to reveal Chinook salmon habitat conditions in subarctic river basins

Climatic extremes can impact the productivity of aquatic species, affecting ecosystems and fishery-dependent communities. Advances in climate products, such as gridded datasets and downscaled projections, may be useful for quantifying freshwater habitat conditions and predicting climate change effects on fish. However, limited guidance exists for selecting climate products to develop indicators of freshwater habitat conditions that influence fish population dynamics. Here, we develop an approach for identifying streamflow and stream temperature models to address this need. We evaluated skill in predicted versus observed streamflow and stream temperature, with predictions depending on different models and gridded climate data as inputs. The best performing models were used in a case study exploring habitat conditions influencing Chinook salmon in the Yukon and Kuskokwim River basins, two remote high-latitude watersheds with few in situ habitat observations and recent salmon declines. Three modeled streamflow datasets had variable performance (median Nash–Sutcliffe efficiencies from 0.39 to 0.70). Three gridded temperature products differed in their ability to explain variation in weekly stream temperatures (median r 2 from 0.42 to 0.76). We selected a single gridded air temperature dataset to compare two novel predictive stream temperature models, both of which had good accuracy (root mean squared error [RMSE] of 1.19 and 0.95°C). Stream temperature indicators calculated from modeled daily data, maximum temperatures during adult migration and cumulative temperatures during juvenile rearing, had high spatial correlation across tributaries within the Yukon and Kuskokwim River basins and showed significant warming over the past 40 years. Streamflow indicators calculated from modeled daily data, maximum flow during spawning and median flow during rearing, had few trends and were largely uncorrelated within the Yukon River basin and moderately correlated within the Kuskokwim River basin. Overall, we found that generic measures of model performance varied considerably, and it was important to consider the models best suited to our case study. For both streamflow and stream temperature, multiple high-performing models allowed estimation of ecologically relevant conditions affecting Chinook salmon. The approach we used to estimate local-scale habitat conditions has value to identify synchronous conditions that may influence multiple salmon populations under a changing subarctic climate.

Alaska↗
USGS2011

Waves and tides responsible for the intermittent closure of the entrance of a small, sheltered tidal wetland at San Francisco, CA

Crissy Field Marsh (CFM; http://www.nps.gov/prsf/planyourvisit/crissy-field-marsh-and-beach.htm ) is a small, restored tidal wetland located in the entrance to San Francisco Bay just east of the Golden Gate. The marsh is small but otherwise fairly typical of many such restored wetlands worldwide. The marsh is hydraulically connected to the bay and the adjacent Pacific Ocean by a narrow sandy channel. The channel often migrates and sometimes closes completely, which effectively blocks the tidal connection to the ocean and disrupts the hydraulics and ecology of the marsh. Field measurements of waves and tides have been examined in order to evaluate the conditions responsible for the intermittent closure of the marsh entrance. The most important factor found to bring about the entrance channel closure is the occurrence of large ocean waves. However, there were also a few closure events during times with relatively small offshore waves. Examination of the deep-water directional wave spectra during these times indicates the presence of a small secondary peak corresponding to long period swell from the southern hemisphere, indicating that CFM and San Francisco Bay in general may be more susceptible to long period ocean swell emanating from the south or southwest than the more common ocean waves coming from the northwest. The tidal records during closure events show no strong relationship between closures and tides, other than that closures tend to occur during multi-day periods with successively increasing high tides. It can be inferred from these findings that the most important process to the intermittent closure of the entrance to CFM is littoral sediment transport driven by the influence of ocean swell waves breaking along the CFM shoreline at oblique angles. During periods of large, oblique waves the littoral transport of sand likely overwhelms the scour potential of the tidal flow in the entrance channel.

California↗
USGS2008

Integrating modelling and remote sensing to identify ecosystem performance anomalies in the boreal forest, Yukon River Basin, Alaska

High-latitude ecosystems are exposed to more pronounced warming effects than other parts of the globe. We develop a technique to monitor ecological changes in a way that distinguishes climate influences from disturbances. In this study, we account for climatic influences on Alaskan boreal forest performance with a data-driven model. We defined ecosystem performance anomalies (EPA) using the residuals of the model and made annual maps of EPA. Most areas (88%) did not have anomalous ecosystem performance for at least 6 of 8 years between 1996 and 2004. Areas with underperforming EPA (10%) often indicate areas associated with recent fires and areas of possible insect infestation or drying soil related to permafrost degradation. Overperforming areas (2%) occurred in older fire recovery areas where increased deciduous vegetation components are expected. The EPA measure was validated with composite burn index data and Landsat vegetation indices near and within burned areas.

International Journal of Digital Earth↗
USGS2014

Foraging habits in a generalist predator: sex and age influence habitat selection and resource use among bottlenose dolphins (Tursiops truncatus)

This study examines resource use (diet, habitat use, and trophic level) within and among demographic groups (males, females, and juveniles) of bottlenose dolphins (Tursiops truncatus). We analyzed the δ13C and δ15N values of 15 prey species constituting 84% of the species found in stomach contents. We used these data to establish a trophic enrichment factor (TEF) to inform dietary analysis using a Bayesian isotope mixing model. We document a TEF of 0‰ and 2.0‰ for δ13C and δ15N, respectively. The dietary results showed that all demographic groups relied heavily on low trophic level seagrass-associated prey. Bayesian standard ellipse areas (SEAb) were calculated to assess diversity in resource use. The SEAb of females was nearly four times larger than that of males indicating varied resource use, likely a consequence of small home ranges and habitat specialization. Juveniles possessed an intermediate SEAb, generally feeding at a lower trophic level compared to females, potentially an effect of natal philopatry and immature foraging skills. The small SEAb of males reflects a high degree of specialization on seagrass associated prey. Patterns in resource use by the demographic groups are likely linked to differences in the relative importance of social and ecological factors.

Marine Mammal Science↗
USGS2020

Temperature and water-quality diversity and the effects of surface-water connection in off-channel features of the Willamette River, Oregon, 2015–16

Water-quality conditions (including temperature) in the Willamette River and many of its adjacent off-channel features, such as alcoves and side channels, were monitored between river miles 67 (near Salem, Oregon) and 168 (near Eugene, Oregon) during the summers of 2015 and 2016. One or more parameters (water temperature, dissolved oxygen, pH, specific conductance, and [or] water depth) were continuously measured at sites in the main channel (9 sites in 2015; 5 sites in 2016) and select off-channel features (20 features in 2015; 22 features in 2016). This study was initiated in reaction to the unusually warm, dry weather and resulting low streamflows that occurred in the Pacific Northwest in 2015 and the need for flow managers to understand the effects of streamflow on water-quality conditions in off-channel features of the Willamette River. Field monitoring was focused on documenting water-quality conditions during low summer streamflows and during fluctuations in streamflow, including when side channels became alcoves and reconnected to become side channels again. Water in the main channel of the Willamette River upstream from river mile 50 near Newberg typically is well mixed during summer, with warm water temperatures (greater than 18 degrees Celsius) and high dissolved-oxygen concentrations (often greater than 7.7 milligrams per liter). During low summer flows, a diverse suite of off-channel features exists adjacent to the main channel of the Willamette River. Despite temporal and spatial variability within individual features, comparison of continuous water-temperature data between the main channel and off-channel features indicated that some off-channel features were consistently cooler than the main channel, some were consistently warmer than the main channel, and others frequently fluctuated between warmer or cooler than the main channel. Site-specific characteristics including upstream connection, depth, and presence or absence of aquatic or riparian vegetation were factors that seemed to affect the water quality of a feature. Results from this study showed a relation between the geomorphology, hydrology, ecology, and water quality of an off-channel feature. Data confirmed that many features that can be classified as cold-water refuges based on water-temperature standards also contained low concentrations of dissolved oxygen that may not be suitable for sensitive fish species. A simplified site classification scheme is proposed that links water-quality conditions in measured off-channel features with site-specific characteristics and summer streamflows. The site classification scheme was extended to create a theoretical process matrix that relates measured water-quality conditions to a list of the processes and site-specific characteristics that could create those conditions.

Oregon↗
USGS2016

Mangrove expansion and contraction at a poleward range limit: Climate extremes and land-ocean temperature gradients

Within the context of climate change, there is a pressing need to better understand the ecological implications of changes in the frequency and intensity of climate extremes. Along subtropical coasts, less frequent and warmer freeze events are expected to permit freeze-sensitive mangrove forests to expand poleward and displace freeze-tolerant salt marshes. Here, our aim was to better understand the drivers of poleward mangrove migration by quantifying spatiotemporal patterns in mangrove range expansion and contraction across land-ocean temperature gradients. Our work was conducted in a freeze-sensitive mangrove-marsh transition zone that spans a land-ocean temperature gradient in one of the world's most wetland-rich regions (Mississippi River Deltaic Plain; Louisiana, USA). We used historical air temperature data (1893-2014), alternative future climate scenarios, and coastal wetland coverage data (1978-2011) to investigate spatiotemporal fluctuations and climate-wetland linkages. Our analyses indicate that changes in mangrove coverage have been controlled primarily by extreme freeze events (i.e., air temperatures below a threshold zone of -6.3 to -7.6 °C). We expect that in the past 121 years, mangrove range expansion and contraction has occurred across land-ocean temperature gradients. Mangrove resistance, resilience, and dominance were all highest in areas closer to the ocean where temperature extremes were buffered by large expanses of water and saturated soil. Under climate change, these areas will likely serve as local hotspots for mangrove dispersal, growth, range expansion, and displacement of salt marsh. Collectively, our results show that the frequency and intensity of freeze events across land-ocean temperature gradients greatly influences spatiotemporal patterns of range expansion and contraction of freeze-sensitive mangroves. We expect that, along subtropical coasts, similar processes govern the distribution and abundance of other freeze-sensitive organisms. In broad terms, our findings can be used to better understand and anticipate the ecological effects of changing winter climate extremes, especially within the transition zone between tropical and temperate climates.

Louisiana↗
USGS2004

Perspective on eastern migration studies: Stopover ecology of migratory landbirds in the Gulf Coast region

Millions of Nearctic-Neotropical landbirds move through the coastal habitats of the Gulf of Mexico each spring and autumn as they migrate across and around the Gulf. Migration routes in the Gulf region are not static and they shift year to year and season to season according to prevailing wind patterns. Using data from field and radar studies, we mapped patterns of migration movement and landfall in the Gulf of Mexico region. Map categories include coastal areas where migrant numbers are consistently high, consistently common, sporadically common-abundant, sporadically common, or sparse. Weather surveillance radar data indicates that habitats along the Northwest Gulf Coast are consistently used each year.

Book chapter↗
USGS2021

Nocturnal incubation recess and flushing behavior by duck hens

Incubating birds must balance the needs of their developing embryos with their own physiological needs, and many birds accomplish this by taking periodic breaks from incubation. Mallard ( Anas platyrhynchos ) and gadwall ( Mareca strepera ) hens typically take incubation recesses in the early morning and late afternoon, but recesses can also take place at night. We examined nocturnal incubation recess behavior for mallard and gadwall hens nesting in Suisun Marsh, California, USA, using iButton temperature dataloggers and continuous video monitoring at nests. Fourteen percent of all detected incubation recesses ( N = 13,708) were nocturnal and took place on 20% of nest‐days ( N = 8,668). Video monitoring showed that hens covered their eggs with down feathers when they initiated a nocturnal recess themselves as they would a diurnal recess, but they left the eggs uncovered in 94% of the nocturnal recesses in which predators appeared at nests. Thus, determining whether or not eggs were left uncovered during a recess can provide strong indication whether the recess was initiated by the hen (eggs covered) or a predator (eggs uncovered). Because nest temperature decreased more rapidly when eggs were left uncovered versus covered, we were able to characterize eggs during nocturnal incubation recesses as covered or uncovered using nest temperature data. Overall, we predicted that 75% of nocturnal recesses were hen‐initiated recesses (eggs covered) whereas 25% of nocturnal recesses were predator‐initiated recesses (eggs uncovered). Of the predator‐initiated nocturnal recesses, 56% were accompanied by evidence of depredation at the nest during the subsequent nest monitoring visit. Hen‐initiated nocturnal recesses began later in the night (closer to morning) and were shorter than predator‐initiated nocturnal recesses. Our results indicate that nocturnal incubation recesses occur regularly (14% of all recesses) and, similar to diurnal recesses, most nocturnal recesses (75%) are initiated by the hen rather than an approaching predator.

Ecology and Evolution↗
USGS2019

Invasive buffelgrass detection using high-resolution satellite and UAV imagery on Google Earth Engine

Methods to detect and monitor the spread of invasive grasses are critical to avoid ecosystem transformations and large economic costs. The rapid spread of non‐native buffelgrass (Pennisetum ciliare) has intensified fire risk and is replacing fire intolerant native vegetation in the Sonoran Desert of the southwestern US. Coarse‐resolution satellite imagery has had limited success in detecting small patches of buffelgrass, whereas ground‐based and aerial survey methods are often cost prohibitive. To improve detection, we trained 2 m resolution DigitalGlobe WorldView‐2 satellite imagery with 12 cm resolution unmanned aerial vehicle (UAV) imagery and classified buffelgrass on Google Earth Engine, a cloud computing platform, using Random Forest (RF) models in Saguaro National Park, Arizona, USA. Our classification models had an average overall accuracy of 93% and producer's accuracies of 94–96% for buffelgrass, although user's accuracies were low. We detected a 2.92 km 2 area of buffelgrass in the eastern Rincon Mountain District (1.07% of the total area) and a 0.46 km 2 area (0.46% of the total area) in the western Tucson Mountain District of Saguaro National Park. Buffelgrass cover was significantly greater in the Sonoran Paloverde‐Mixed Cacti Desert Scrub vegetation type, on poorly developed Entisols and Inceptisol soils and on south‐facing topographic aspects compared to other areas. Our results demonstrate that high‐resolution imagery improve on previous attempts to detect and classify buffelgrass and indicate potential areas where the invasive grass might spread. The methods demonstrated in this study could be employed by land managers as a low‐cost strategy to identify priority areas for control efforts and continued monitoring.

Arizona↗
USGS2010

How vegetation and sediment transport feedbacks drive landscape change in the Everglades and wetlands worldwide

Mechanisms reported to promote landscape self‐organization cannot explain vegetation patterning oriented parallel to flow. Recent catastrophic shifts in Everglades landscape pattern and ecological function highlight the need to understand the feedbacks governing these ecosystems. We modeled feedback between vegetation, hydrology, and sediment transport on the basis of a decade of experimentation. Results from more than 100 simulations showed that flows just sufficient to redistribute sediment from sparsely vegetated sloughs to dense ridges were needed for an equilibrium patterned landscape oriented parallel to flow. Surprisingly, although vegetation heterogeneity typically conveys resilience, in wetlands governed by flow/sediment feedbacks it indicates metastability, whereby the landscape is prone to catastrophic shifts. Substantial increases or decreases in flow relative to the equilibrium condition caused an expansion of emergent vegetation and loss of open‐water areas that was unlikely to revert upon restoration of the equilibrium hydrology. Understanding these feedbacks is critical in forecasting wetland responses to changing conditions and designing management strategies that optimize ecosystem services, such as carbon sequestration or habitat provision. Our model and new sensitivity analysis techniques address these issues and make it newly apparent that simply returning flow to predrainage conditions in the Everglades may not be sufficient to restore historic landscape patterns and processes.

American Naturalist↗
USGS2007

Mangrove recruitment after forest disturbance is facilitated by herbaceous species in the Caribbean

Plant communities along tropical coastlines are often affected by natural and human disturbances, but little is known about factors influencing recovery. We focused on mangrove forests, which are among the most threatened ecosystems globally, to examine how facilitation by herbaceous vegetation might improve forest restoration after disturbance. We specifically investigated whether recovery of mangrove forests in harsh environments is accelerated by nurse plants and whether the beneficial effects are species-specific. Quantification of standardized effects allowed comparisons across performance parameters and over time for: (1) net effect of each herbaceous species on mangrove survival and growth, (2) effects of pre- and post-establishment factors associated with each herbaceous species, and (3) need for artificial planting to enhance growth or survival of mangrove seedlings. Mangrove recruitment in a clear-cut forest in Belize was accelerated by the presence of Sesuvium portulacastrum (succulent forb) and Distichlis spicata (grass), two coastal species common throughout the Caribbean region. The net effect of herbaceous vegetation was positive, but the magnitude of effects on mangrove survival and growth differed by species. Because of differences in their vegetative structure and other features, species effects on mangroves also varied by mechanism: (1) trapping of dispersing propagules (both species), (2) structural support of the seedling (Distichlis), and/or (3) promotion of survival (Sesuvium) or growth (Distichlis) through amelioration of soil conditions (temperature, aeration). Artificial planting had a stronger positive effect on mangrove survival than did edaphic conditions, but planting enhanced mangrove growth more in Sesuvium than in Distichlis patches. Our study indicates that beneficial species might be selected based on features that provide multiple positive effects and that species comparisons may be improved using standardized effects. Our findings are not only relevant to the coastal environments found in the Caribbean region, but our assessment methods may be useful for developing site-specific information to restore disturbed mangrove forests worldwide, especially given the large pool of mangrove associates (>45 genera) available for screening. ?? 2007 by the Ecological Society of America.

Ecological Applications↗
USGS2005

Oceanographic conditions structure forage fishes into lipid-rich and lipid-poor communities in lower Cook Inlet, Alaska, USA

Forage fishes were sampled with a mid-water trawl in lower Cook Inlet, Alaska, USA, from late July to early August 1996 to 1999. We sampled 3 oceanographically distinct areas of lower Cook Inlet: waters adjacent to Chisik Island, in Kachemak Bay, and near the Barren Islands. In 163 tows using a mid-water trawl, 229437 fishes with fork length <200 mm were captured. More than 39 species were captured in lower Cook Inlet, but Pacific sand lance Ammodytes hexapterus, juvenile Pacific herring Clupea pallasi, and juvenile walleye pollock Theragra chalcogramma comprised 97.5% of the total individuals. Both species richness and species diversity were highest in warm, low-salinity, weakly stratified waters near Chisik Island. Kachemak Bay, which had thermohaline values between those found near Chisik Island and the Barren Islands, had an intermediate value of species richness. Species richness was lowest at the Barren Islands, an exposed region that regularly receives oceanic, upwelled water from the Gulf of Alaska. Non-metric multidimensional scaling (NMDS) was used to compute axes of species composition based on an ordination of pairwise site dissimilarities. Each axis was strongly rank-correlated with unique groups of species and examined separately as a function of environmental parameters (temperature, salinity, depth), area, and year. Oceanographic parameters accounted for 41 and 12% of the variability among forage fishes indicated by Axis 1 and Axis 2, respectively. Axis 1 also captured the spatial variability in the upwelled area of lower Cook Inlet and essentially contrasted the distribution of species among shallow, nearshore (sand lance, herring) and deep, offshore (walleye pollock) habitats. Axis 2 captured the spatial variability in forage fish communities from the north (Chisik Island) to the south (Barren Islands) of lower Cook Inlet and essentially contrasted a highly diverse community dominated by salmonids and osmerids (warmer, less saline) with a fish community dominated by Pacific sand lance (colder, more saline). Axis 3 reflected the negative spatial association of capelin Mallotus villosus and Pacific cod Gadus macrocephalus. Correlations of year with Axes 1 and 3 indicate that from 1996 to 1999 the forage fish community significantly decreased in lipid-poor gadids (walleye pollock and Pacific cod), and significantly increased in lipid-rich species such as Pacific sand lance, Pacific herring, and capelin.

Alaska↗
USGS2025

Evaluating slash piles as habitat for a threatened salamander

Background Amplified wildfire activity in forests of the western United States threatens biodiversity. Fuel treatments can reduce fire severity, modify fire behavior, and restore forest structure and composition, yet impacts of some treatments, including slash piling and burning, on wildlife have received little attention. Piling of residual woody material may create habitable microenvironments for species that require cool, moist microclimates for all biological and ecological functions. One such species, the Sacramento Mountain salamander ( Aneides hardii Taylor), a relictual, endemic salamander narrowly distributed in the mountains of south-central New Mexico, USA, has been found below constructed slash piles within its range, but the characteristics of occupied slash piles and the extent of their occupancy has not yet been quantified. We surveyed for Sacramento Mountain salamanders in slash piles and under logs (cover objects) adjacent to piles and within a surrounding survey plot, and related salamander occupancy to slash pile and cover object characteristics, soil moisture and temperature, and environmental setting. Results We found Sacramento Mountain salamanders in 50% of surveyed slash piles. About 90% of salamanders were found in piles that contained black plastic sheeting, which held accumulations of moist leaf litter and other forest debris. We found no differences in pile characteristics, soil variables, or environmental setting between piles occupied by salamanders and piles in which no salamanders were detected. Salamander density was highest in slash piles, ~ 10% lower under cover objects in the survey area, and ~ 23% lower under cover objects adjacent to slash piles. Conclusions Slash piles serve as habitat for Sacramento Mountain salamanders. Our results suggest that within our study area or similar environments within the species range, any comparable slash pile has the potential to be occupied by salamanders. Species and habitat conservation measures indicated by this study and the timing of historical detections into mid-October include constructing smaller, pyramidal piles that minimize log-on-log or log-ground contact, avoiding the inclusion of black plastic in piles, limiting residence time of piles on the landscape, and initiating pile burning in late October or early November, when most salamanders are likely to have retreated below the ground surface.

New Mexico↗
USGS2011

Functional profiles reveal unique ecological roles of various biological soil crust organisms

At the heart of the body of research on biodiversity effects on ecosystem function is the debate over whether different species tend to be functionally singular or redundant. When we consider ecosystem multi‐function, the provision of multiple ecosystem functions simultaneously, we may find that seemingly redundant species may in fact play unique roles in ecosystems. 2. Over the last few decades, the significance of biological soil crusts (BSCs) as ecological boundaries and ecosystem engineers, and their multi‐functional nature, has become increasingly well documented. We compiled ‘functional profiles’ of the organisms in this understudied community, to determine whether functional singularity emerges when multiple ecosystem functions are considered. 3. In two data sets, one representing multiple sites around the semi‐arid regions of Spain (regional scale), and another from a single site in central Spain (local scale), we examined correlations between the abundance or frequency of BSC species in a community, and multiple surrogates of ecosystem functioning. There was a wide array of apparent effects of species on specific functions. 4. Notably, in gypsiferous soils and at regional scale, we found that indicators of carbon (C) and phosphorus cycling were apparently suppressed and promoted by the lichens Diploschistes diacapsis and Squamarina lentigera , respectively. The moss Pleurochaete squarrosa appears to promote C cycling in calcareous soils at this spatial scale. At the local scale in gypsiferous soils, D. diacapsis positively correlated with carbon cycling, but negatively with nitrogen cycling, whereas numerous lichens exhibited the opposite profile. 5. We found a high degree of functional singularity, i.e. that species were highly individualistic in their effects on multiple functions. Many functional attributes were not easily predictable from existing functional grouping systems based primarily on morphology. 6. Our results suggest that maintaining species‐rich BSC communities is crucial to maintain the overall functionality of ecosystems dominated by these organisms, and that dominance and the outcome of competition could be highly influential in the determination of such functionality.

Functional Ecology↗
USGS2012

Climate-change-driven deterioration of water quality in a mineralized watershed

A unique 30-year streamwater chemistry data set from a mineralized alpine watershed with naturally acidic, metal-rich water displays dissolved concentrations of Zn and other metals of ecological concern increasing by 100–400% (400–2000 μg/L) during low-flow months, when metal concentrations are highest. SO 4 and other major ions show similar increases. A lack of natural or anthropogenic land disturbances in the watershed during the study period suggests that climate change is the underlying cause. Local mean annual and mean summer air temperatures have increased at a rate of 0.2–1.2 °C/decade since the 1980s. Other climatic and hydrologic indices, including stream discharge during low-flow months, do not display statistically significant trends. Consideration of potential specific causal mechanisms driven by rising temperatures suggests that melting of permafrost and falling water tables (from decreased recharge) are probable explanations for the increasing concentrations. The prospect of future widespread increases in dissolved solutes from mineralized watersheds is concerning given likely negative impacts on downstream ecosystems and water resources, and complications created for the establishment of attainable remediation objectives at mine sites.

Environmental Science & Technology↗