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Lava domes modeled as brittle shells that enclose pressurized magma, with application to Mount St. Helens
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Assessing the solubilities and reaction kinetics of aluminous minerals in soils
The use of chemical thermodynamics and reaction kinetics is necessary to quantitatively model the transformation of aluminous minerals and their dissolved constituents in soils and other geochemical systems. Soils are thermodynamically open systems subject to atmospheric and biological forces and do not attain overall thermodynamic equilibrium with respect to either mass or time. However, local or partial equilibrium conditions may persist for particular minerals and their dissolved constituents. Igneous and metamorphic primary minerals break down chemically to yield disordered gels or colloids and constituent ions, which can then reorganize or precipitate to form more stable hydrous oxides, silicates, carbonates or other mineral species. Naturally-occurring iron and aluminum hydrous oxides and kaolin clays, abundant in highly weathered soils, are commonly believed to be the ultimate, stable end products of weathering reactions, but usually are thermodynamically metastable with respect to more perfectly ordered, synthetic specimens. Thermodynamic stability is no guaranty of mineral persistence; with sufficient time, even the most perfectly crystallized, stable mineral will yield to the solubilizing assault of undersaturated surface waters. All of the dissolution and precipitation reactions of soil minerals are driven by energy differences in the thermodynamic stabilities of reactants and products, and the velocities (or kinetics) of such reactions are regulated by variables of the hydrogeochemical environment.
Partition and adsorption on soil and mobility of organic pollutants and pesticides
The mechanism for sorption of organic pollutants and pesticides by soil has long been a subject of profound interest because of its direct impacts on the mobility and activity of the compounds in soil. Although a large volume of laboratory and field data on many aspects of soil behavior had been gathered between the 1950s and 1970s, during which period the use of organic pesticides was increased, no general agreement was reached regarding the sorptive mechanism involved. Since the 1970s, the outgrowth of public concern over environmental contamination further stimulated research in this subject. The development of this field of research has now reached a point that the diverse characteristics of soil sorption can be placed in a much better perspective. This enables researchers to reexamine old and new data for consistency and for assessing the activity of organic pollutants and pesticides in soil.
Distribution and occurrence of organic acids in subsurface waters
No abstract available.
Preliminary characterization of a virus causing infectious anemia among stocks of salmonid fish in the western United States
Since 1982, anemias occurring in stocks of yearling coho ( Oncorhynchus kisutch ) and chinook salmon (Oncorhynchus tshawytscha ) have been associated with serious losses at hatcheries in the Pacific Northwest, USA. The anemia is often accompanied by infections with external fungus (e.g. Saprolegnia) or the bacterial pathogens Cytophaga psychrophila or Renibacterium salmoninarum (Holt and Rohovec 1984, Leek 1987). The losses associated with the anemia are thought to be caused by these secondary infections. Blood smears that were made from anemic fish and stained with Giemsa or pinacyanol chloride showed erythrocytic inclusions ranging in size from 1 to 8 um and varying in number per cell. Thin sections of infected red blood cells (RBC) examined by electron microscopy revealed virus particles approximately 70 nm in diameter. The virions were scattered in the cytoplasm of the RBC or contained within membrane bound organelles. These virus particles were morphologically distinct from the iridovirus, erythrocytic necrosis virus (ENV), which is also associated with anemia (Holt and Rohovec 1984, Leek 1987). Evidence suggests that the etiological agent of this new anemic disease, termed erythrocytic inclusion body syndrome (EIBS) by Leek (1987), is a previously undescribed virus infecting salmon. The purpose of this study was to experimentally transmit the disease to healthy fish, to determine the blood parameters associated with infection, and to investigate the nature of the virus associated with EIBS.
Implementation of biomarker-based studies
Biomarkers may be used to determine chemical exposure and effects in several important ways. These include (1) evaluation of new agricultural or industrial chemicals for effects, (2) screening of municipal or industrial effluents, (3) determining the geographic distribution of chemical effects in the environment and their changes over time, (4) determining the identity and source of chemical pollutants, and (5) establishing cause and effect linkages.
Hydrological processes and the water budget of lakes
Lakes interact with all components of the hydrological system: atmospheric water, surface water, and groundwater. The fluxes of water to and from lakes with regard to each of these components represent the water budget of a lake. Mathematically, the concept of a water budget is deceptively simple: income equals outgo, plus or minus change in storage. In practice, however, measuring the water fluxes to and from lakes accurately is not simple, because understanding of the various hydrological processes and the ability to measure the various hydrological components are limited.
Hydrological and thermal response of lakes to climate: Description and modeling
Lake systems continually respond to climatic conditions that vary over broad scales of space and time. The spatial distribution of lakes on the Earth’s surface is indicative of long-term patterns of atmospheric circulation, and the annual cycle of climate over lake basins is reflected in seasonal change in the size and temperature of lakes. Lake size is determined by the balance of water inputs and outputs, and lake temperature is governed by the balance of heat inputs and outputs. The lake hydrological and energy balances are coupled to the atmosphere. In response to the inputs of mass, energy, and momentum (precipitation, radiation, and wind stress), lakes return heat and moisture to the atmosphere through conduction and evaporation. Global, regional, or local change in the hydrological or thermal states of lakes thus represent interactive responses to climatic variation in the supply of water and energy.
Peritidal lithologies of Cambrian carbonate islands, Carrara Formation, southern Great Basin
The Carrara Formation is a heterogeneous sequence of quartzites, siltstones, shales, limestones, dolostones, and mixed terrigenous-carbonate rocks. It is Early and Middle Cambrian in age (Stewart, 1970; Palmer, 1971). Figure 32-1 illustrates the general distribution of Carrara lithologies along a transect approximately normal to depositional strike (Fig. 32-2). The formation contains three “grand cycles” (Aitken, 1966; Palmer, 1971), which terminate at the top of massive limestone members. A fourth cycle begins with the uppermost shale of section 9 and is not illustrated in sections 3 through 8. This fourth cycle grades into the overlying Bonanza King Formation.
Coupling demography, physiology and evolution in chaparral shrubs,
Historically, since fire is a recurrent catastrophic disturbance, mediterranean-climate shrubs have been classified by their mode of postfire regeneration, i.e., obligate seeders, facultative seeders or obligate resprouters. While these terms are useful, they are too restrictive in that they only refer to a species’ response to fire and do not adequately describe modes of reproduction for all taxa.
Sources and age of aquatic humus
As aquatic scientists have recognized the diversity of processes controlled by or dependent upon aquatic humus, it has become important to learn more about the genesis, chemical properties, and concentration of humic substances in aquatic ecosystems. There are three classes of aquatic humus (fulvic acids, humic acids, and humin), all of which share the characteristics of being heterogeneous biomolecules which are yellow to brown or black in color, high to moderate molecular weight, and biologically recalcitrant. Fulvic acids are organic acids which are soluble at any pH; humic acids are soluble above pH 2; and humin is insoluble under the full range of pH. Aquatic humus occurs in both dissolved and solid phases, with molecular weights ranging from about 500 D for dissolved fulvic acid to greater than 100,000 D for humic acids in sediments. Although the heterogeneity of these humic fractions makes rigorous chemical studies challenging, there are sufficient analytical methods at hand to make progress toward understanding the sources, formation pathways, and fate of aquatic humus.
Use and environmental occurrence of veterinary pharmaceuticals in the United States
The purpose of this chapter is to familiarise the reader with the range of veterinary pharmaceuticals used in agriculture in the United States and to provide examples of the environmental occurrence of selected veterinary pharmaceuticals. A 1998 survey conducted by the Animal Health Institute (AHI) reported that there were 109 million cattle, 7.5 billion chickens, 92 million swine, and 292 million turkeys in the United States (AHI 2002). In comparison, a 2002 survey conducted by the National Agricultural Statistics Service (NASS) reported 104 million cattle, 8.6 billion chickens, 60 million swine, and 275 million turkeys in the United States (NASS 2002). To increase the efficiency of food production and maintain economic viability, animal agribusinesses began contracting with cooperative farmers, which lead to a proliferation of large animal-feeding operations (AFOs) over the last decade. Because of the close proximity of the large numbers of animals at these facilities and the potential for the rapid spread of disease, use of pharmaceuticals is important to maintain their operations.
Copahue volcano and its regional magmatic setting
Copahue volcano (Province of Neuquen, Argentina) has produced lavas and strombolian deposits over several 100,000s of years, building a rounded volcano with a 3 km elevation. The products are mainly basaltic andesites, with the 2000–2012 eruptive products the most mafic. The geochemistry of Copahue products is compared with those of the main Andes arc (Llaima, Callaqui, Tolhuaca), the older Caviahue volcano directly east of Copahue, and the back arc volcanics of the Loncopue graben. The Caviahue rocks resemble the main Andes arc suite, whereas the Copahue rocks are characterized by lower Fe and Ti contents and higher incompatible element concentrations. The rocks have negative Nb-Ta anomalies, modest enrichments in radiogenic Sr and Pb isotope ratios and slightly depleted Nd isotope ratios. The combined trace element and isotopic data indicate that Copahue magmas formed in a relatively dry mantle environment, with melting of a subducted sediment residue. The back arc basalts show a wide variation in isotopic composition, have similar water contents as the Copahue magmas and show evidence for a subducted sedimentary component in their source regions. The low 206 Pb/ 204 Pb of some backarc lava flows suggests the presence of a second endmember with an EM1 flavor in its source. The overall magma genesis is explained within the context of a subducted slab with sediment that gradually looses water, water-mobile elements, and then switches to sediment melt extracts deeper down in the subduction zone. With the change in element extraction mechanism with depth comes a depletion and fractionation of the subducted complex that is reflected in the isotope and trace element signatures of the products from the main arc to Copahue to the back arc basalts.
Inference for occupancy and occupancy dynamics
This chapter deals with the estimation of occupancy as a state variable to assess the status of, and track changes in, species distributions when sampling with camera traps. Much of the recent interest in occupancy estimation and modeling originated from the models developed by MacKenzie et al. (2002, 2003), although similar methods were developed independently (Azuma et al. 1990; Bayley and Petersen 2001; Nichols and Karanth, 2002; Tyre et al. 2003), all of which deal with species occurrence information and imperfect detection. Less than a decade after these publications, the modeling and estimation of species occurrence and occupancy dynamics have increased significantly. Special features of scientific journals have explored innovative uses of detection–nondetection data with occupancy models (Vojta 2005), and an entire volume has synthesized the use and application of occupancy estimation methods (MacKenzie et al. 2006). Reviews of the topical concepts, philosophical considerations, and various sampling designs that can be used for occupancy estimation are now readily available for a range of audiences (MacKenzie and Royle 2005; MacKenzie et al. 2006; Bailey et al. 2007; Royle and Dorazio 2008; Conroy and Carroll 2009; Kendall and White 2009; Hines et al. 2010; Link and Barker 2010). As a result, it would be pointless here to recast all that these publications have so eloquently articulated, but that said, a review of any scientific topic requires sufficient context and relevant background information, especially when relatively new methodologies and techniques such as occupancy estimation and camera traps are involved. This is especially critical in a digital age where new information is published at warp speed, making it increasingly difficult to stay abreast of theoretical advances and research developments.
Science, conservation, and camera traps
Biologists commonly perceive camera traps as a new tool that enables them to enter the hitherto secret world of wild animals. Camera traps are being used in a wide range of studies dealing with animal ecology, behavior, and conservation. Our intention in this volume is not to simply present the various uses of camera traps, but to focus on their use in the conduct of science and conservation. In this chapter, we provide an overview of these two broad classes of endeavor and sketch the manner in which camera traps are likely to be able to contribute to them. Our main point here is that neither photographs of individual animals, nor detection history data, nor parameter estimates generated from detection histories are the ultimate objective of a camera trap study directed at either science or management. Instead, the ultimate objectives are best viewed as either gaining an understanding of how ecological systems work (science) or trying to make wise decisions that move systems from less desirable to more desirable states (conservation, management). Therefore, we briefly describe here basic approaches to science and management, emphasizing the role of field data and associated analyses in these processes. We provide examples of ways in which camera trap data can inform science and management.