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Seasonal and diel movements of white sturgeon in the lower columbia river

Continuous monitoring of the movements and depths used by white sturgeon Acipenser transmontanus with acoustic telemetry technologies in the lower Columbia River provided information on diel and seasonal migrations, local movements, and site fidelity. White sturgeon moved to shallower water at night and showed greater activity, inferred from rates of movement, than during daytime. The extent of local movement within a season was variable among fish; some fish readily moved among habitats while the movements of others were more constrained. White sturgeon were absent from the study area (river kilometers 45-52) during winter and returned from upstream during the spring, confirming an upstream seasonal migration in the fall and downstream migration in spring. The return of individual fish and reoccupation of areas previously inhabited showed that some white sturgeon exhibit site fidelity. This work shows that studies seeking to characterize habitat for white sturgeon need to be cognizant of diel migrations and site fidelity. We urge caution in the use of limited fish location data to describe habitats if diel activities and fine-scale movements are not known.

Transactions of the American Fisheries Society↗

Balancing aquatic habitat fragmentation and control of invasive species: Enhancing selective fish passage at sea lamprey control barriers

Barriers to prevent spawning migrations of sea lampreys Petromyzon marinus remain an important component of an integrated sea lamprey management program in the Laurentian Great Lakes. Concerns about effects on nontarget fishes have led to the construction of specially designed vertical-slot trap-and-sort fishways to mitigate potential barrier effects. To improve passage at these fishways, we used passive integrated transponder technology to assess the performance of two fishways located on low-head sea lamprey barriers. Fishways on the Big Carp River (which flows into Lake Superior) and Cobourg Brook (which flows into Lake Ontario) were assessed for attraction efficiency, trap attraction and retention, and passage efficiency. Based on the results of these assessments, fishways were modified by increasing the trap volume and altering the funnel characteristics to reduce escapement from the trap and then reassessed. Attraction efficiency for all tagged fish was high (≥80%) at both sites in all years. Fishway modifications improved passage from 35% in 2003 to 88% and 64% in 2004 and 2005, respectively, at the Big Carp River. As expected, white suckers Catostomus commersonii , an obligate migrant, had higher attraction and passage efficiency, fewer passage attempts, and shorter migration delay than did rock bass Ambloplites rupestris , a facultative migrant. No improvements were seen at Cobourg Brook, where passage efficiency remained low (7% in 2003, 10% in 2005), probably because of the loss of attraction flow. At both fishways, individual fish averaged 3-10 attempts to pass through the fishways and had their migrations delayed 1-2 weeks. The observed improvements to the Big Carp River fishway, which resulted in high fishway attraction and passage rates for white suckers, suggest that vertical-slot fishways can help mitigate the effects of low-head barriers for some species. Our study provides a rigorous quantifiable approach to assessing fishway performance that can be employed widely and successfully to assess initial fishway design and subsequent modifications.

Big Carp River, Cobourg Brook↗

A field ornithologist’s guide to genomics: Practical considerations for ecology and conservation

Vast improvements in sequencing technology have made it practical to simultaneously sequence millions of nucleotides distributed across the genome, opening the door for genomic studies in virtually any species. Ornithological research stands to benefit in three substantial ways. First, genomic methods enhance our ability to parse and simultaneously analyze both neutral and non-neutral genomic regions, thus providing insight into adaptive evolution and divergence. Second, the sheer quantity of sequence data generated by current sequencing platforms allows increased precision and resolution in analyses. Third, high-throughput sequencing can benefit applications that focus on a small number of loci that are otherwise prohibitively expensive, time-consuming, and technically difficult using traditional sequencing methods. These advances have improved our ability to understand evolutionary processes like speciation and local adaptation, but they also offer many practical applications in the fields of population ecology, migration tracking, conservation planning, diet analyses, and disease ecology. This review provides a guide for field ornithologists interested in incorporating genomic approaches into their research program, with an emphasis on techniques related to ecology and conservation. We present a general overview of contemporary genomic approaches and methods, as well as important considerations when selecting a genomic technique. We also discuss research questions that are likely to benefit from utilizing high-throughput sequencing instruments, highlighting select examples from recent avian studies.

The Auk↗

Testing assumptions in the use of PIT tags to study movement of Plethodon salamanders

Studying the movements of organisms that live underground for at least a portion of their life history is challenging, given the state of current technology. Passive integrated transponders (PIT tags) provide a way to individually identify and, more recently, study the movement of smaller animals, including those that make subterranean movements. However, there are widespread assumptions of the use of PIT tags that remain problematic. We tested the effects of PIT-tag implantation on growth and survival, along with the effects of electromagnetic fields for reading PIT tags on behavior, of the smallest salamander that has been PIT-tagged: the Red-Backed Salamander. We found no effect of PIT tags on growth or survival. Using a mesocosm experiment, we also found that electromagnetic effects associated with reading PIT tags, had no effect on salamander behavior. Further, we describe a novel PIT antenna and soil mesocosm experimental arena for studying belowground movements of woodland salamanders. Collectively, these studies suggest that the use of PIT tags do not influence the growth, survival, or behavior of Red-Backed Salamanders. Given the challenges of studying salamanders that live underground and the impending changes in climate and landscapes, this research suggests that PIT tags remain a viable tool for studying the movement ecology of salamanders under global change.

Journal of Herpetology↗

Genome-wide SNP analysis reveals multiple paternity in Burmese pythons invasive to the Greater Florida Everglades

Reproductive strategies are an essential component of invasion ecology that influence invasion success and rates of population growth. Burmese Pythons ( Python bivittatus ) are large constrictor snakes that were introduced to the Greater Everglades Ecosystem of southern Florida, USA, from Asia. Since their introduction, these giant constrictors have spread throughout wetlands of southern Florida while increasing in abundance and causing declines in the native species upon which they prey. Multiple paternity in reproduction could facilitate invasion success by increasing the genetic diversity produced within each reproductive event. We used Diversity Arrays Technology genome-wide genotyping to assess multiple paternity in the progeny of wild Burmese Pythons in Florida. We analyzed >4,000 single nucleotide polymorphisms from 153 neonates belonging to 4 clutches collected in southwestern Florida. Complementary hierarchical and K -means clustering analyses of the genetic distances within clutches revealed that three clutches were each fertilized by two sires, with a fourth fertilized by a single sire. The proportions of offspring attributable to each sire within multiple paternity clutches ranged from nearly even to highly skewed. Analysis of multivariate dispersion showed significantly increased genetic variability in the multiple paternity clutches. These results improve our understanding of the reproductive strategy and invasion potential of a giant constrictor with significant ecological impacts.

Florida↗

Bird mortality associated with wind turbines at the Buffalo Ridge wind resource area, Minnesota

Recent technological advances have made wind power a viable source of alternative energy production and the number of windplant facilities has increased in the United States. Construction was completed on a 73 turbine, 25 megawatt windplant on Buffalo Ridge near Lake Benton, Minnesota in Spring 1994. The number of birds killed at existing windplants in California caused concern about the potential impacts of the Buffalo Ridge facility on the avian community. From April 1994 through Dec. 1995 we searched the Buffalo Ridge windplant site for dead birds. Additionally, we evaluated search efficiency, predator scavenging rates and rate of carcass decomposition. During 20 mo of monitoring we found 12 dead birds. Collisions with wind turbines were suspected for 8 of the 12 birds. During observer efficiency trials searchers found 78.8% of carcasses. Scavengers removed 39.5% of carcasses during scavenging trials. All carcasses remained recognizable during 7 d decomposition trials. After correction for biases we estimated that approximately 36 ?? 12 birds (<1 dead bird per turbine) were killed at the Buffalo Ridge windplant in 1 y. Although windplants do not appear to be more detrimental to birds than other man-made structures, proper facility sitting is an important first consideration in order to avoid unnecessary fatalities.

Minnesota↗

Preliminary evaluation of behavioral response of nesting waterbirds to small unmanned aircraft flight

Small unmanned aircraft systems present an emerging technology with the potential to survey colonial waterbird populations while reducing disturbance in comparison to traditional ground counts. Recent research with these systems has been performed on some colonially nesting avian species; however, none have focused on wading bird species. During 2015–2016, this study tested the behavioral response of a mixed-species rookery (Cattle Egret ( Bubulcus ibis ), Snowy Egret ( Egretta thula ), Glossy Ibis ( Plegadis falcinellus ) and a groundnesting colony of Common Terns ( Sterna hirundo )) in shrub habitat to small unmanned aircraft system flights at 12 m, 15 m, 30 m, and 50 m. Even at the lowest altitudes, the birds either showed no reaction or acclimated within 60 sec of the fly-over. Conversely, physically entering the colony to conduct ground surveys resulted in all Common Terns flushing from their nests beginning when the observer was 50 m away and required significantly more time in the colony overall: ~30–60 min vs. ~3–7 min with the small unmanned aircraft system. While this study focuses only on the behavioral response of nesting birds and not comparison of count estimates, these results provide preliminary evidence that small unmanned aircraft systems provide the potential to monitor colonial nesting bird populations while minimizing disturbance to the colony.

Waterbirds↗

Variation in detection distance of Eastern Black Rail (Laterallus jamaicensis jamaicensis) vocalizations by autonomous recording units

Autonomous recording units (ARUs) are an emerging technology that allows for passive monitoring of soniferous animals and soundscapes. Over the past decade, ARUs have become a popular tool for monitoring birds for their potential to reduce the labor and costs of traditional in-person sampling procedures. However, uncertainty surrounding factors affecting detection of avian taxa using ARUs can inhibit their monitoring efficacy. Eastern Black Rails ( Laterallus jamaicensis jamaicensis ) are a secretive marsh bird listed as a federally threatened species in the U.S.A. Eastern Black Rail vocalizations are difficult to detect by field personnel, and numerous in-person surveys can be required to confirm their presence at a site. While ARUs are an alternative for detecting Eastern Black Rails, it is unknown at what maximum distance an ARU can detect their vocalizations. We evaluated factors affecting the detection distance of simulated vocalizations for ARUs in four marsh vegetation types under a range of environmental conditions. Detection distances varied across models, vocalization and vegetation types, and call volume. Kickeedo vocalizations were detected at greater distances, and detection distances increased for all vocalization types in open vegetation. High relative humidity increased detection distances, while louder background noise decreased detection distances. High wind speeds in cordgrass ( Spartina spp .) decreased detection probability disproportionately relative to other vegetation types. Based on these results, considerations of survey area, vegetation type, and site condition can allow land managers and researchers to optimize Eastern Black Rail monitoring using ARUs. Given the substantial staff time needed to monitor this species, ARUs may increase the likelihood of detection and provide an efficient alternative to in-person monitoring.

Waterbirds↗

Assessment of distribution and abundance estimates for Mariana swiftlets (Aerodramus bartschi) via examination of survey methods

We described past and present distribution and abundance data to evaluate the status of the endangered Mariana Swiftlet ( Aerodramus bartschi ), a little-known echolocating cave swiftlet that currently inhabits 3 of 5 formerly occupied islands in the Mariana archipelago. We then evaluated the survey methods used to attain these estimates via fieldwork carried out on an introduced population of Mariana Swiftlets on the island of O'ahu, Hawaiian Islands, to derive better methods for future surveys. We estimate the range-wide population of Mariana Swiftlets to be 5,704 individuals occurring in 15 caves on Saipan, Aguiguan, and Guam in the Marianas; and 142 individuals occupying one tunnel on O'ahu. We further confirm that swiftlets have been extirpated from Rota and Tinian and have declined on Aguiguan. Swiftlets have remained relatively stable on Guam and Saipan in recent years. Our assessment of survey methods used for Mariana Swiftlets suggests overestimates depending on the technique used. We suggest the use of night vision technology and other changes to more accurately reflect their distribution, abundance, and status.

Wilson Journal of Ornithology↗

Post-construction monitoring of a Core-Loc™ breakwater using tripod-based LiDAR

The goal of the technology application described herein is to determine whether breakwater monitoring data collected using Tripod (or Terrestrial) Light Detection and Ranging (T-LiDAR) can give insight into processes such as how Core-Loc™ concrete armour units nest following construction, and in turn how settlement affects armour layer stability, concrete cap performance, and armour unit breakage. A further objective is that this information can then be incorporated into the design of future projects using concrete armour units. The results of this application of T-LiDAR, including the challenges encountered and the conclusions drawn regarding initial concrete armour unit movement will be presented in this paper.

Book chapter↗

LiDAR and field observations of slip distribution for the most recent surface ruptures along the central San Jacinto fault

We measured offsets on tectonically displaced geomorphic features along 80 km of the Clark strand of the San Jacinto fault (SJF) to estimate slip‐per‐event for the past several surface ruptures. We identify 168 offset features from which we make over 490 measurements using B4 light detection and ranging (LiDAR) imagery and field observations. Our results suggest that LiDAR technology is an exemplary supplement to traditional field methods in slip‐per‐event studies. Displacement estimates indicate that the most recent surface‐rupturing event (MRE) produced an average of 2.5&ndash;2.9 m of right‐lateral slip with maximum slip of nearly 4 m at Anza, a M w 7.2&ndash;7.5 earthquake. Average multiple‐event offsets for the same 80 kms are &sim;5.5&thinsp;&thinsp;m, with maximum values of 3 m at Anza for the penultimate event. Cumulative displacements of 9&ndash;10 m through Anza suggest the third event was also similar in size. Paleoseismic work at Hog Lake dates the most recent surface rupture event at ca. 1790. A poorly located, large earthquake occurred in southern California on 22 November 1800; we relocate this event to the Clark fault based on the MRE at Hog Lake. We also recognize the occurrence of a younger rupture along &sim;15&ndash;20&thinsp;&thinsp;km of the fault in Blackburn Canyon with &sim;1.25&thinsp;&thinsp;m of average displacement. We attribute these offsets to the 21 April 1918 M w 6.9 event. These data argue that much or all of the Clark fault, and possibly also the Casa Loma fault, fail together in large earthquakes, but that shorter sections may fail in smaller events.

California↗

Improvements in absolute seismometer sensitivity calibration using local earth gravity measurements

The ability to determine both absolute and relative seismic amplitudes is fundamentally limited by the accuracy and precision with which scientists are able to calibrate seismometer sensitivities and characterize their response. Currently, across the Global Seismic Network (GSN), errors in midband sensitivity exceed 3% at the 95% confidence interval and are the least‐constrained response parameter in seismic recording systems. We explore a new methodology utilizing precise absolute Earth gravity measurements to determine the midband sensitivity of seismic instruments. We first determine the absolute sensitivity of Kinemetrics EpiSensor accelerometers to 0.06% at the 99% confidence interval by inverting them in a known gravity field at the Albuquerque Seismological Laboratory (ASL). After the accelerometer is calibrated, we install it in its normal configuration next to broadband seismometers and subject the sensors to identical ground motions to perform relative calibrations of the broadband sensors. Using this technique, we are able to determine the absolute midband sensitivity of the vertical components of Nanometrics Trillium Compact seismometers to within 0.11% and Streckeisen STS‐2 seismometers to within 0.14% at the 99% confidence interval. The technique enables absolute calibrations from first principles that are traceable to National Institute of Standards and Technology (NIST) measurements while providing nearly an order of magnitude more precision than step‐table calibrations.

Bulletin of the Seismological Society of America↗

Observations of rotational motions from local earthquakes using two temporary portable sensors in Waynoka, Oklahoma

Characterizing rotational motions from earthquakes at local distances has the potential to improve earthquake engineering and seismic gradiometry by better characterizing the complete seismic wavefield. Applied Technology Associates (ATA) has developed a proto‐seismic magnetohydrodynamic (SMHD) three‐component rotational rate sensor. We deploy two ATA rotational rate sensors at a temporary aftershock station in Waynoka, Oklahoma. From 27 April to 6 June 2017, we recorded the translational and rotational motions of 155 earthquakes of ML≥2.0 within 220 km of the station. Using the recorded events, we compare peak ground rotation rate (⁠ PGω˙ ⁠) with peak ground velocity (PGV) and with peak ground acceleration (PGA). Our results support previously identified potential relationships between the two quantities. We also compare peak ground rotations (⁠ PGω ⁠) as a function of seismic moment and distance. We found that PGω˙ decays with an exponent of approximately −4.0km−1 for both horizontal and vertical components. On the other hand, PGA decays with an exponent of approximately −1.8km−1 for all components. We compute apparent phase velocity directly from the rotational data for both horizontally polarized shear waves (SH; 379m/s with a standard deviation of 114m/s ⁠) and vertically polarized compression and shear waves (P‐SV; 387m/s with a standard deviation of 121m/s ⁠). Finally, by comparing various rotational and translational components, we look at potential implications for estimating local event source parameters. We found that the absolute correlation of nearby earthquakes decays at a rate of approximately 0.39/km for rotational sensors. This decay rate of absolute correlation is faster on translational sensors with a decay rate of 0.44/km. The latter may help in identifying phenomena such as repeating earthquakes by using differences in correlations as a function of distance and how these differences compare with translational correlations.

Oklahoma↗

The potential of using fiber optic distributed acoustic sensing (DAS) in earthquake early warning applications

As the seismological community embraces fiber optic distributed acoustic sensing (DAS), DAS arrays are becoming a logical, scalable option to obtain strain and ground‐motion data for which the installation of seismometers is not easy or cheap, such as in dense offshore arrays. The potential of strain data in earthquake early warning (EEW) applications has been recently demonstrated using records from borehole strainmeters (BSMs). However, current BSM networks are sparse, installing more BSMs is expensive and often impractical, and BSMs have the same limitations in offshore environments as other traditional seismic instruments. Here, we aim to provide a road map about how DAS data could be used in existing EEW applications, using the ShakeAlert EEW System for the West Coast of the United States as an example. We review the data requirements for EEW systems, examine ways in which strain‐derived ground‐motion data can be incorporated into such systems without significant modifications, and determine what is still needed for full utilization of DAS data in these applications. Importantly, EEW algorithms require ground‐motion amplitude information for rapid earthquake source characterization; thus, accurate strain amplitude observations, not only phase information, are necessary for deriving these ground‐motion metrics from DAS data. To obtain high‐quality ground‐motion observations, EEW‐compatible DAS arrays need to be multicomponent, well coupled, and low noise. We suggest ways to achieve such data requirements using existing DAS technology and discuss areas in which further research is needed to optimize DAS array performance for EEW.

Bulletin of the Seismological Society of America↗

Performance of several low-cost accelerometers

Several groups are implementing low‐cost host‐operated systems of strong‐motion accelerographs to support the somewhat divergent needs of seismologists and earthquake engineers. The Advanced National Seismic System Technical Implementation Committee (ANSS TIC, 2002), managed by the U.S. Geological Survey (USGS) in cooperation with other network operators, is exploring the efficacy of such systems if used in ANSS networks. To this end, ANSS convened a working group to explore available Class C strong‐motion accelerometers (defined later), and to consider operational and quality control issues, and the means of annotating, storing, and using such data in ANSS networks. The working group members are largely coincident with our author list, and this report informs instrument‐performance matters in the working group’s report to ANSS. Present examples of operational networks of such devices are the Community Seismic Network (CSN; csn.caltech.edu), operated by the California Institute of Technology, and Quake‐Catcher Network (QCN; Cochran et al., 2009; qcn.stanford.edu; November 2013), jointly operated by Stanford University and the USGS. Several similar efforts are in development at other institutions. The overarching goals of such efforts are to add spatial density to existing Class‐A and Class‐B (see next paragraph) networks at low cost, and to include many additional people so they become invested in the issues of earthquakes, their measurement, and the damage they cause.

Seismological Research Letters↗

The Red Atrapa Sismos (Quake Catcher Network in Mexico): assessing performance during large and damaging earthquakes.

The Quake‐Catcher Network (QCN) is an expanding seismic array made possible by thousands of participants who volunteered time and resources from their computers to record seismic data using low‐cost accelerometers (http://qcn.stanford.edu/; last accessed December 2014). Sensors based on Micro‐Electromechanical Systems (MEMS) technology have rapidly improved over the last few years due to the demand of the private sector (e.g., automobiles, cell phones, and laptops). For strong‐motion applications, low‐cost MEMS accelerometers have promising features due to an increasing resolution and near‐linear phase and amplitude response ( Cochran, Lawrence, Christensen, and Jakka, 2009 ; Clayton et al. , 2011 ; Evans et al. , 2014 ). Each volunteer computer monitors ground motion and communicates using the Berkeley Open Infrastructure for Network Computing (BOINC, Anderson, 2004 ). Using a standard short‐term average, long‐term average (STLA) algorithm ( Earle and Shearer, 1994 ; Cochran, Lawrence, Christensen, Chung, 2009 ; Cochran, Lawrence, Christensen, and Jakka, 2009 ), volunteer computer and sensor systems detect abrupt changes in the acceleration recordings. Each time a possible trigger signal is declared, a small package of information containing sensor and ground‐motion information is streamed to one of the QCN servers ( Chung et al. , 2011 ). Trigger signals, correlated in space and time, are then processed by the QCN server to look for potential earthquakes.

Seismological Research Letters↗

Origins of a national seismic system in the United States

This historical review traces the origins of the current national seismic system in the United States, a cooperative effort that unifies national, regional, and local‐scale seismic monitoring within the structure of the Advanced National Seismic System (ANSS). The review covers (1) the history and technological evolution of U.S. seismic networks leading up to the 1990s, (2) factors that made the 1960s and 1970s a watershed period for national attention to seismology, earthquake hazards, and seismic monitoring, (3) genesis of the vision of a national seismic system during 1980–1983, (4) obstacles and breakthroughs during 1984–1989, (5) consensus building and convergence during 1990–1992, and finally (6) the two‐step realization of a national system during 1993–2000. Particular importance is placed on developments during the period between 1980 and 1993 that culminated in the adoption of a charter for the Council of the National Seismic System (CNSS)—the foundation for the later ANSS. Central to this story is how many individuals worked together toward a common goal of a more rational and sustainable approach to national earthquake monitoring in the United States. The review ends with the emergence of ANSS during 1999 and 2000 and its statutory authorization by Congress in November 2000.

Seismological Research Letters↗

NEHRP turns 40

This year, the National Earthquake Hazards Reduction Program (NEHRP) turns 40, four decades since the Earthquake Hazards Reduction Act of 1977 was enacted establishing the Program, spurring numerous federal, state, and community actions to reduce earthquake losses in the U.S.A. and its territories and setting a standard for earthquake loss‐reduction projects internationally. Four agencies are partners in NEHRP: the Federal Emergency Management Agency (FEMA), the National Institute of Standards and Technology (NIST, the lead agency), the National Science Foundation (NSF), and the U.S. Geological Survey (USGS).

Seismological Research Letters↗