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Factors affecting coastal wetland loss and restoration

Opening paragraph: Tidal and nontidal wetlands in the Chesapeake Bay watershed provide vital hydrologic, water-quality, and ecological functions. Situated at the interface of land and water, these valuable habitats are vulnerable to alteration and loss by human activities including direct conversion to non-wetland habitat by dredge-and-fill activities from land development, and to the effects of excessive nutrients, altered hydrology and runoff, contaminants, prescribed fire management, and invasive species. Processes such as sea-level rise and climate change also impact wetlands. Although local, State, and Federal regulations provide for protection of wetland resources, the conversion and loss of wetland habitats continue in the Bay watershed. Given the critical values of wetlands, the Chesapeake 2000 Agreement has a goal to achieve a net gain in wetlands by restoring 25,000 acres of tidal and nontidal wetlands by 2010. The USGS has synthesized findings on three topics: (1) sea-level rise and wetland loss, (2) wetland restoration, and (3) factors affecting wetland diversity.

Book chapter↗

Role of multidecadal climate variability in a range extension of pinyon pine

Evidence from woodrat middens and tree rings at Dutch John Mountain (DJM) in northeastern Utah reveal spatiotemporal patterns of pinyon pine ( Pinus edulis Engelm.) colonization and expansion in the past millennium. The DJM population, a northern outpost of pinyon, was established by long-distance dispersal (~40 km). Growth of this isolate was markedly episodic and tracked multidecadal variability in precipitation. Initial colonization occurred by AD 1246, but expansion was forestalled by catastrophic drought (1250–1288), which we speculate produced extensive mortality of Utah Juniper ( Juniperus osteosperma (Torr.) Little), the dominant tree at DJM for the previous ~8700 years. Pinyon then quickly replaced juniper across DJM during a few wet decades (1330–1339 and 1368–1377). Such alternating decadal-scale droughts and pluvial events play a key role in structuring plant communities at the landscape to regional level. These decadal-length precipitation anomalies tend to be regionally coherent and can synchronize physical and biological processes across large areas. Vegetation forecast models must incorporate these temporal and geographic aspects of climate variability to accurately predict the effects of future climate change.

Utah↗

Are all intertidal wetlands naturally created equal? Bottlenecks, thresholds and knowledge gaps to mangrove and saltmarsh ecosystems

Intertidal wetlands such as saltmarshes and mangroves provide numerous important ecological functions, though they are in rapid and global decline. To better conserve and restore these wetland ecosystems, we need an understanding of the fundamental natural bottlenecks and thresholds to their establishment and long-term ecological maintenance. Despite inhabiting similar intertidal positions, the biological traits of these systems differ markedly in structure, phenology, life history, phylogeny and dispersal, suggesting large differences in biophysical interactions. By providing the first systematic comparison between saltmarshes and mangroves, we unravel how the interplay between species-specific life-history traits, biophysical interactions and biogeomorphological feedback processes determine where, when and what wetland can establish, the thresholds to long-term ecosystem stability, and constraints to genetic connectivity between intertidal wetland populations at the landscape level. To understand these process interactions, research into the constraints to wetland development, and biological adaptations to overcome these critical bottlenecks and thresholds requires a truly interdisciplinary approach.

Biological Reviews↗

A promising tool for subsurface permafrost mapping-An application of airborne geophysics from the Yukon River Basin, Alaska

Permafrost is a predominant physical feature of the Earth's Arctic and Subarctic clines and a major consideration encompassing ecosystem structure to infrastructure engineering and placement. Perennially frozen ground is estimated to cover about 85 percent of the state of Alaska where northern reaches are underlain with continuous permafrost and parts of interior Alaska are underlain by areas of discontinuous and (or) sporadic permafrost (fig. 1). The region of Interior Alaska, where permafrost is scattered among unfrozen ground, is a complex mosaic of terrains and habitats. Such diversity creates arrays of lakes and surface-water and groundwater patterns that continental populations of migratory waterfowl and internationally significant fisheries have adapted to over time. A road or pipeline might pass over frozen and unfrozen ground, affecting the types of materials and engineering approaches needed to sustain the infrastructure. Effective mapping of discontinuous permafrost at scales meaningful ecologically and (or) from an engineering perspective has been a long-standing challenge. Using techniques such as borehole logging for site-specific assessments or botanical techniques that can suggest underlying permafrost distributions can be labor intensive and difficult to accomplish at the scale and remoteness of much of Alaska. The climate is changing in the Arctic and Subarctic regions. The warming observed throughout much of Alaska could create widespread changes in permafrost. How the warming of the permafrost affects near-surface processes, ecosystems, and community infrastructure and ecosystems is not clear. A better understanding of the dynamic distribution and physical properties of permafrost, from continuous to discontinuous, will provide knowledge of how the permafrost environment may change in the future and help inform engineering and natural resource response strategies. Here we discuss an application of an airborne remote sensing methodology for mapping and shade imaging permafrost characteristics at various scales. This work provides the first look into three-dimensional distribution of permafrost in the areas around Fort Yukon and is a demonstration of the application of airborne electromagnetic (AEM) to permafrost mapping. Such an approach is attractive, particularly in Arctic and Subarctic studies, where ground access is difficult and ecosystems are fragile. In June 2010, the U.S. Geological Survey (USGS) conducted an AEM survey near Fort Yukon, Alaska. The primary focus of this survey was to map the distribution of permafrost in selected areas in order to supply information for the development of groundwater models of the Yukon River Basin. However, the methodologies have more far-reaching ecological and engineering applications. Approximately 1,800 line kilometers were acquired in a combination of typical block style surveying in the immediate area of Fort Yukon and in long reconnaissance lines over a broader area. The widely spaced lines were flown to cross the modern Yukon River in "X" like patterns with intersections at features that have been previously studied (fig. 2). AEM is used to gather data on the electrical resistivity of materials in the subsurface below the flight path of the helicopter, which are then analyzed to interpret the subsurface lithology and the location and extent of permafrost. For this survey, the electrical resistivity was imaged to depths on the order of 50-100 meters. Images from the survey can be qualitatively compared with known permafrost features and suggest new permafrost features. Electrical properties of earth materials are affected by lithology as well as temperature and the presence of ice; frozen materials become substantially more resistive. This allows for the identification of permafrost from the resistivity image (Abraham and others, 2011). In the area of Fort Yukon, the AEM survey shows elevated resistivities extending to depth, likely indicative of thick permafrost. This depth corresponds well to observations from a borehole drilled in the area in the late 1990s, which detected permafrost to a depth of about 100 meters (Clark and others, 2009). In contrast to the area of Fort Yukon, the Yukon River and its floodplain are not associated with deep resistive sediments, suggesting a lack of deep permafrost, at least within the depth range of the AEM mapping (fig. 3).

Yukon River Basin↗

Isohaline position as a habitat indicator for estuarine populations

Populations of native and introduced aquatic organisms in the San Francisco Bay/Sacramento-San Joaquin Delta Estuary ("Bay/Delta") have undergone significant declines over the past two decades. Decreased river inflow due to drought and increased freshwater diversion have contributed to the decline of at least some populations. Effective management of the estuary's biological resources requires a sensitive indicator of the response to freshwater inflow that has ecological significance, can be measured accurately and easily, and could be used as a "policy" variable to set standards for managing freshwater inflow. Positioning of the 2% (grams of salt per kilogram of seawater) bottom salinity value along the axis of the estuary was examined for this purpose. The 2% bottom salinity position (denoted by X 2 ) has simple and significant statistical relationships with annual measures of many estuarine resources, including the supply of phytoplankton and phytoplankton-derived detritus from local production and river loading; benthic macroinvertebrates (molluscs); mysids and shrimp; larval fish survival; and the abundance of planktivorous, piscivorous, and bottom-foraging fish. The actual mechanisms are understood for only a few of these populations. X 2 also satisfies other recognized requirements for a habitat indicator and probably can be measured with greater accuracy and precision than alternative habitat indicators such as net freshwater inflow into the estuary. The 2% value may not have special ecological significance for other estuaries (in the Bay/Delta, it marks the locations of an estuarine turbidity maximum and peaks in the abundance of several estuarine organisms), but the concept of using near-bottom isohaline position as a habitat indicator should be widely applicable. Although X 2 is a sensitive index of the estuarine community's response to net freshwater inflow, other hydraulic features of the estuary also determine population abundances and resource levels. In particular, diversion of water for export from or consumption within the estuary can have a direct effect on population abundance independent of its effect on X 2 . The need to consider diversion, in addition to X 2 , for managing certain estuarine resources is illustrated using striped bass survival as an example. The striped bass survival data were also used to illustrate a related important point: incorporating additional explanatory variables may decrease the prediction error for a population or process, but it can increase the uncertainty in parameter estimates and management strategies based on these estimates. Even in cases where the uncertainty is currently too large to guide management decisions, an uncertainty analysis can identify the most practical direction for future data acquisition.

California↗

Integration of social and ecological sciences for natural resource decision making: Challenges and opportunities

The last 25 years have witnessed growing recognition that natural resource management decisions depend as much on understanding humans and their social interactions as on understanding the interactions between non-human organisms and their environment. Decision science provides a framework for integrating ecological and social factors into a decision, but challenges to integration remain. The decision-analytic framework elicits values and preferences to help articulate objectives, and then evaluates the outcomes of alternative management actions to achieve these objectives. Integrating social science into these steps can be hindered by failing to include social scientists as more than stakeholder-process facilitators, assuming that specific decision-analytic skills are commonplace for social scientists, misperceptions of social data as inherently qualitative, timescale mismatches for iterating through decision analysis and collecting relevant social data, difficulties in predicting human behavior, and failures of institutions to recognize the importance of this integration. We engage these challenges, and suggest solutions to them, helping move forward the integration of social and biological/ecological knowledge and considerations in decision-making.

Environmental Management↗

Characterization of winter foraging locations of Adélie penguins along the Western Antarctic Peninsula, 2001–2002

In accord with the hypotheses driving the Southern Ocean Global Ocean Ecosystems Dynamics (SO GLOBEC) program, we tested the hypothesis that the winter foraging ecology of a major top predator in waters off the Western Antarctic Peninsula (WAP), the Ad&eacute;lie penguin ( Pygoscelis adeliae ), is constrained by oceanographic features related to the physiography of the region. This hypothesis grew from the supposition that breeding colonies in the WAP during summer are located adjacent to areas of complex bathymetry where circulation and upwelling processes appear to ensure predictable food resources. Therefore, we tested the additional hypothesis that these areas continue to contribute to the foraging strategy of this species throughout the non-breeding winter season. We used satellite telemetry data collected as part of the SO GLOBEC program during the austral winters of 2001 and 2002 to characterize individual penguin foraging locations in relation to bathymetry, sea ice variability within the pack ice, and wind velocity and divergence (as a proxy for potential areas with cracks and leads). We also explored differences between males and females in core foraging area overlap. Ocean depth was the most influential variable in the determination of foraging location, with most birds focusing their effort on shallow (<200 m) waters near land and on mixed-layer (200&ndash;500 m) waters near the edge of deep troughs. Within-ice variability and wind (as a proxy for potential areas with cracks and leads) were not found to be influential variables, which is likely because of the low resolution satellite imagery and model outputs that were available. Throughout the study period, all individuals maintained a core foraging area separated from other individuals with very little overlap. However, from a year with light sea ice to one with heavy ice cover (2001&ndash;2002), we observed an increase in the overlap of individual female foraging areas with those of other birds, likely due to restricted access to the water column, reduced prey abundance, or higher prey concentration. Male birds maintained separate core foraging areas with the same small amount of overlap, showing no difference in overlap between the years. While complex bathymetry was an important physical variable influencing the Ad&eacute;lie penguin's foraging, the analysis of sea ice data of a higher resolution than was available for this study may help elucidate the role of sea ice in affecting Ad&eacute;lie penguin winter foraging behavior within the pack ice.

Deep-Sea Research Part II: Topical Studies in Ocea↗

Regional target loads of atmospheric nitrogen and sulfur deposition for the protection of stream and watershed soil resources of the Adirondack Mountains, USA

Acidic deposition contributes to a range of environmental impacts across forested landscapes, including acidification of soil and drainage water, toxic aluminum mobilization, depletion of available soil nutrient cations, and impacts to forest and aquatic species health and biodiversity. In response to decreasing levels of acidic deposition, soils and drainage waters in some regions of North America have become gradually less acidic. Thresholds of atmospheric deposition at which adverse ecological effects are manifested are called critical loads (CLs) and/or target loads (TLs). Target loads are developed based on approaches that account for spatial and temporal aspects of acidification and recovery. Exceedance represents the extent to which current or projected future levels of acidic deposition exceed the level expected to cause ecological harm. We report TLs of sulfur (S) and nitrogen (N) deposition and the potential for ecosystem recovery of watershed soils and streams in the Adirondack region of New York State, resources that have been less thoroughly investigated than lakes. Regional TLs were calculated by statistical extrapolation of hindcast and forecast simulations of 25 watersheds using the process-based model PnET-BGC coupled with empirical observations of stream hydrology and established sensitivity of sugar maple ( Acer saccharum ) to soil base saturation and brook trout ( Salvelinus fontinalis ) to stream acid neutralizing capacity (ANC). Historical impacts and the expected recovery timeline of regional soil and stream chemistry and fish community condition within the Adirondack Park were evaluated. Analysis suggests that many low-order Adirondack streams and associated watershed soils have low TLs (<40 meq/m 2 /yr of N+S deposition) to achieve specified benchmarks for recovery of soil base saturation or stream ANC. Acid-sensitive headwater and low-order streams and watershed soils in the region are expected to experience continued adverse effects from N and S deposition well into the future even under aggressive emissions reductions. Watershed soils and streams in the western Adirondack Park are particularly vulnerable to acidic deposition and currently in exceedance of TLs. The methods used for linking statistical and process-based models to consider chemical and biological response under varying flow conditions at the regional scale in this study can be applied to other areas of concern.

New York↗

The influence of layout on Appalachian Trail soil loss, widening, and muddiness: Implications for sustainable trail design and management

This research investigates the influence of layout and design on the severity of trail degradation. Previous trail studies have been restricted by relatively small study areas which provide a limited range of environmental conditions and therefore produce findings with limited applicability; this research improves on this limitation by analyzing a representative sample of the Appalachian Trail with significant topographical, ecological, use-related, and managerial diversity. Many trail science studies have also focused on a singular form of trail degradation, whereas this study investigates all three core types of trail impact: trail soil loss, widening and muddiness. Relational analyses with all three indicators provide a more cohesive understanding of trail impact and reveal interrelationships between trail degradation processes. ANOVA testing of the mean values for these trail impact indicators across categories of influential independent factors confirms and refines the relevance of core trail design principles, specifically the sustainability advantages of trails with low grades and side-hill alignments. Findings also reveal and clarify the importance of landform grade in determining the susceptibility of trails to degradation and the influence of routing decisions; these relationships have received relatively little attention in the literature. The results also reveal several methodological considerations for trail alignment metrics and trail impact indicators

Connecticut, Georgia, Maine, Massachusetts, Maryla↗

A comprehensive multi-state conditional occupancy model for evaluating interactions of non-native and native species

A major challenge in ecology is disentangling interactions of non-native, potentially invasive species on native species. Conditional two-species occupancy models examine the effects of dominant species (e.g., non-native) on subordinate species (e.g., native) while considering the possibility that occupancy of one species may affect occupancy and/ or detection of the other. Although conditional two-species models are useful for evaluating the influence of one species on presence of another, it is possible that species interactions are density dependent. Therefore, we developed a novel two-species occupancy model that incorporates multiple abundance states (i.e., absent, present, abundant) of the native species. We showcase the utility of this model with a case study that incorporates random effects and covariates on both occupancy and detection to help disentangle species interactions given varying occupancy and detection in different abundance states. We use snorkel survey data from the Umpqua basin, Oregon, where it is hypothesized that smallmouth bass Micropterus dolomieu , a non-native piscivore, exclude Umpqua chub Oregonichthys kalawatseti , a small endemic minnow. From our two-species multi-state (2SMS) model, we concluded that average occupancy was low for both fishes, and that when non-native bass were present, overall native chub occupancy in the present (0.18 ± 0.05 SD) and abundant (0.19 ± 0.03) states was higher than when non-natives were absent (0.14 ± 0.02/ 0.08 ± 0.02), indicating the non-native was not excluding the native species. By incorporating a species interaction factor, we found a positive association (6.75 ± 5.54 SD) between native chub and non-native bass. The covariates strongly related to occupancy were elevation, algae, and land cover type (urban and shrub). Detection probability for both species (0.21–0.82) was most strongly related to the covariates day of year, water temperature, gravel substrate, and stream order/ magnitude. Incorporation of detection probability and covariates enabled interpretation of interactions between the two species that may have been missed without their inclusion in the modeling process. Our new 2SMS occupancy model can be used by scientists and managers with a broad range of survey and covariate data to disentangle species interactions problems to help them inform management decisions.

Frontiers in Ecology and Evolution↗

Characterization and expression profile of the ovarian cytochrome P-450 aromatase (cyp19A1) gene during thermolabile sex determination in Pejerrey, Odontesthes bonariensis

Cytochrome P450 aromatase (cyp19) is an enzyme that catalyzes the conversion of androgens to estrogens and may play a role in temperature- dependent sex determination (TSD) of reptiles, amphibians, and fishes. In this study, the ovarian P450 aromatase form (cyp19A1) of pejerrey Odontesthes bonariensis, a teleost with marked TSD, was cloned and its expression profile evaluated during gonadal differentiation at feminizing (17??C, 100% females), mixed-sex producing (24 and 25??C, 73.3 and 26.7% females, respectively), and masculinizing (29??C, 0% females) temperatures. The deduced cyp19A1 amino acid sequence shared high identity (>77.8%) with that from other teleosts but had low identity (<61.8%) with brain forms (cyp19A2), including that of pejerrey itself. The tissue distribution analysis of cyp19A1 mRNA in adult fish revealed high expression in the ovary. Semi-quantitative reverse transcription polymerase chain reaction analysis of the bodies of larvae revealed that cyp19A1 expression increased before the appearance of the first histological signs of ovarian differentiation at the feminizing temperature but remained low at the masculinizing temperature. The expression levels at mixed-sex producing temperatures were bimodal rather than intermediate, showing low and high modal values similar to those at the feminizing and masculinizing temperatures, respectively. The population percentages of high and low expression levels at intermediate temperatures were proportional to the percentage of females and males, respectively, and high levels were first observed at about the time of sex differentiation of females. These results suggest that cyp19A1 is involved in the process of ovarian formation and possibly also in the TSD of pejerrey. ?? 2007 Wiley-Liss, Inc.

Journal of Experimental Zoology Part A: Ecological↗

Wood decay in desert riverine environments

Floodplain forests and the woody debris they produce are major components of riverine ecosystems in many arid and semiarid regions (drylands). We monitored breakdown and nitrogen dynamics in wood and bark from a native riparian tree, Fremont cottonwood ( Populus deltoides subsp. wislizeni ), along four North American desert streams. We placed locally-obtained, fresh, coarse material [disks or cylinders (&sim;500&ndash;2000 cm 3 )] along two cold-desert and two warm-desert rivers in the Colorado River Basin. Material was placed in both floodplain and aquatic environments, and left in situ for up to 12 years. We tested the hypothesis that breakdown would be fastest in relatively warm and moist aerobic environments by comparing the time required for 50% loss of initial ash-free dry matter ( T 50 ) calculated using exponential decay models incorporating a lag term. In cold-desert sites (Green and Yampa rivers, Colorado), disks of wood with bark attached exposed for up to 12 years in locations rarely inundated lost mass at a slower rate ( T 50 = 34 yr) than in locations inundated during most spring floods ( T 50 = 12 yr). At the latter locations, bark alone loss mass at a rate initially similar to whole disks ( T 50 = 13 yr), but which subsequently slowed. In warm-desert sites monitored for 3 years, cylinders of wood with bark removed lost mass very slowly ( T 50 = 60 yr) at a location never inundated (Bill Williams River, Arizona), whereas decay rate varied among aquatic locations ( T 50 = 20 yr in Bill Williams River; T 50 = 3 yr in Las Vegas Wash, an effluent-dominated stream warmed by treated wastewater inflows). Invertebrates had a minor role in wood breakdown except at in-stream locations in Las Vegas Wash. The presence and form of change in nitrogen content during exposure varied among riverine environments. Our results suggest woody debris breakdown in desert riverine ecosystems is primarily a microbial process with rates determined by landscape position, local weather, and especially the regional climate through its effect on the flow regime. The increased warmth and aridity expected to accompany climate change in the North American southwest will likely retard the already slow wood decay process on naturally functioning desert river floodplains. Our results have implications for designing environmental flows to manage floodplain forest wood budgets, carbon storage, and nutrient cycling along regulated dryland rivers.

Arizona, Colorado, Nevada↗

Pathways of productivity and influences on top consumers in forested streams

Forested stream ecosystems involve complex physical and biotic pathways that can influence fish in numerous ways. Consequently, the responses of fish communities to disturbance can be difficult to understand. In this study, we employed a food web model that links biotic (e.g., physiology, predator–prey interactions) and abiotic (e.g., temperature, sunlight) attributes to address fish responses to changes in stream-riparian ecosystems. We modeled responses to food web dynamics in four streams, using scenarios that included responses to riparian disturbance, climate change, and shifts in top consumers. The two consumers we focused on were coastal cutthroat trout ( Oncorhynchus clarkii clarkii ) and sculpin ( Cottus spp., collectively treated as a functional group) . We found the responses to environmental changes varied by fish species and among streams, and that responses were not independent due to exploitative interspecific competition. Simulations based on long-term data indicated that coastal cutthroat trout were responsive to changes in allochthonous resources including terrestrial detritus and invertebrates, whereas sculpin were more responsive to changes to autochthonous resources that included, periphyton and aquatic invertebrates. These results may be, in part, a consequence of species-specific foraging behavior. Trout have a higher propensity to drift feed and therefore receive a substantial subsidy from terrestrial invertebrates, whereas sculpin feed mostly on aquatic insects on the streambed. Simulations of changes in summer temperature and stream discharge suggest decreased biomass of both fish species because of physiological constraints on invertebrate prey which reduce fish foraging opportunities. Exploitative competition also may be important in fish responses: when one fish taxon was removed, the other showed increased biomass. Although the pattern of simulation results was consistent across the four streams, the magnitude of change varied among streams. Streams with food webs fueled by multiple energy sources may be more resilient to changes to riparian forests and climate. Through application of a systems model, we gained insights into pathways of productivity for fish in forested stream ecosystems that provide understanding of processes that influence fish and streams, as well as implications for management of both.

Forest Ecology and Management↗

The importance of rapid, disturbance-induced losses in carbon management and sequestration

Management of terrestrial carbon fluxes is being proposed as a means of increasing the amount of carbon sequestered in the terrestrial biosphere. This approach is generally viewed only as an interim strategy for the coming decades while other longer-term strategies are developed and implemented — the most important being the direct reduction of carbon emissions. We are concerned that the potential for rapid, disturbance-induced losses may be much greater than is currently appreciated, especially by the decision-making community. Here we wish to: (1) highlight the complex and threshold-like nature of disturbances — such as fire and drought, as well as the erosion associated with each — that could lead to carbon losses; (2) note the global extent of ecosystems that are at risk of such disturbance-induced carbon losses; and (3) call for increased consideration of and research on the mechanisms by which large, rapid disturbance-induced losses of terrestrial carbon could occur . Our lack of ability as a scientific community to predict such ecosystem dynamics is precluding the effective consideration of these processes into strategies and policies related to carbon management and sequestration. Consequently, scientists need to do more to improve quantification of these potential losses and to integrate them into sound, sustainable policy options.

Global Ecology and Biogeography↗

Relationships between larval fish drift, time of day and discharge in an Ozark stream

We examined the relationship between larval fish numbers and discharge during a high flow event in Bear Creek, Arkansas, a small Ozark stream. Additionally, we examined the relationship between fish numbers and time of day, and the spatial distribution of families and size classes. A total of 3,083 fish from five families were collected. Leuciscidae was the dominant family collected, followed by Percidae, and Catostomidae. Larval fish in Bear Creek were not susceptible to increased discharge from the flood event, as all three families exhibited strong significant negative relationships to discharge at night when discharge began to decline. Larval fish in Bear Creek drifted significantly more at night than during the day, with the exception of large percids, which exhibited no diel pattern. Leuciscidae and small Percidae showed a spatial pattern of distribution across the stream at night, with higher drift densities in near shore nets. The results from our study indicate that fish drift in Bear Creek was an active process, with most larval fish drifting in response to decreased light intensity. We suggest future studies consider the effects of flood intensity on larval fish drift relative to diel periodicity.

Arkansas↗

The role of neutral and adaptive genomic variation in population diversification and speciation in two ground squirrel species of conservation concern

Understanding the neutral (demographic) and adaptive processes leading to the differentiation of species and populations is a critical component of evolutionary and conservation biology. In this context, recently diverged taxa represent a unique opportunity to study the process of genetic differentiation. Northern and southern Idaho ground squirrels ( Urocitellus brunneus —NIDGS, and U . endemicus —SIDGS, respectively) are a recently diverged pair of sister species that have undergone dramatic declines in the last 50 years and are currently found in metapopulations across restricted spatial areas with distinct environmental pressures. Here we genotyped single-nucleotide polymorphisms (SNPs) from buccal swabs with restriction site-associated DNA sequencing (RADseq). With these data we evaluated neutral genetic structure at both the inter- and intraspecific level, and identified putatively adaptive SNPs using population structure outlier detection and genotype–environment association (GEA) analyses. At the interspecific level, we detected a clear separation between NIDGS and SIDGS, and evidence for adaptive differentiation putatively linked to torpor patterns. At the intraspecific level, we found evidence of both neutral and adaptive differentiation. For NIDGS, elevation appears to be the main driver of adaptive differentiation, while neutral variation patterns match and expand information on the low connectivity between some populations identified in previous studies using microsatellite markers. For SIDGS, neutral substructure generally reflected natural geographical barriers, while adaptive variation reflected differences in land cover and temperature, as well as elevation. These results clearly highlight the roles of neutral and adaptive processes for understanding the complexity of the processes leading to species and population differentiation, which can have important conservation implications in susceptible and threatened species.

Idaho↗

Riparian vegetation response to altered disturbance and stress regimes

Management of terrestrial carbon fluxes is being proposed as a means of increasing the amount of carbon sequestered in the terrestrial biosphere. This approach is generally viewed only as an interim strategy for the coming decades while other longer-term strategies are developed and implemented — the most important being the direct reduction of carbon emissions. We are concerned that the potential for rapid, disturbance-induced losses may be much greater than is currently appreciated, especially by the decision-making community. Here we wish to: (1) highlight the complex and threshold-like nature of disturbances — such as fire and drought, as well as the erosion associated with each — that could lead to carbon losses; (2) note the global extent of ecosystems that are at risk of such disturbance-induced carbon losses; and (3) call for increased consideration of and research on the mechanisms by which large, rapid disturbance-induced losses of terrestrial carbon could occur . Our lack of ability as a scientific community to predict such ecosystem dynamics is precluding the effective consideration of these processes into strategies and policies related to carbon management and sequestration. Consequently, scientists need to do more to improve quantification of these potential losses and to integrate them into sound, sustainable policy options.

Arizona↗

Interagency Ecological Program long-term monitoring element review: Pilot approach and methods development (2020)

This report describes the first-year, pilot-phase of what is intended to be a larger, multiple-year review of all IEP core long-term monitoring elements (LTMEs). Here we hope to provide evidence that the review team arrangement and communication schedule was effective at developing a framework to objectively evaluate a suite of LTMEs. We focused on developing methods for an effective review, documenting the process of methods development, and compiling recommendations for applications of these methods to future reviews. We also gathered recommendations to improve data collection, catchability-adjustment, and record keeping processes which will be useful for all LTMEs regardless of when they are to be reviewed. Although we did not complete a comprehensive review of the long-term monitoring elements due to our short timeline, we believe this report represents a substantial effort towards that review and will serve as an invaluable guide for subsequent IEP LTME reviews.

Report↗