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At least 1,549 records · Page 86Linked to original sources

Two-dimensional streamflow simulations of the Jordan River, Midvale and West Jordan, Utah

The Jordan River in Midvale and West Jordan, Utah, flows adjacent to two U.S. Environmental Protection Agency Superfund sites: Midvale Slag and Sharon Steel. At both sites, geotechnical caps extend to the east bank of the river. The final remediation tasks for these sites included the replacement of a historic sheet-pile dam and the stabilization of the river banks adjacent to the Superfund sites. To assist with these tasks, two hydraulic modeling codes contained in the U.S. Geological Survey (USGS) Multi-Dimensional Surface-Water Modeling System (MD_SWMS), System for Transport and River Modeling (SToRM) and Flow and Sediment Transport and Morphological Evolution of Channels (FaSTMECH), were used to provide predicted water-surface elevations, velocities, and boundary shear-stress values throughout the study reach of the Jordan River. A SToRM model of a 0.7 mile subreach containing the sheet-pile dam was used to compare water-surface elevations and velocities associated with the sheet-pile dam and a proposed replacement structure. Maps showing water-surface elevation and velocity differences computed from simulations of the historic sheet-pile dam and the proposed replacement structure topographies for streamflows of 500 and 1,000 cubic feet per second (ft 3 /s) were created. These difference maps indicated that the velocities associated with the proposed replacement structure topographies were less than or equal to those associated with the historic sheet-pile dam. Similarly, water-surface elevations associated with the proposed replacement structure topographies were all either greater than or equal to water-surface elevations associated with the sheet-pile dam. A FaSTMECH model was developed for the 2.5-mile study reach to aid engineers in bank stabilization designs. Predicted water-surface elevations, velocities and shear-stress values were mapped on an aerial photograph of the study reach to place these parameters in a spatial context. Profile plots of predicted cross-stream average water-surface elevations and cross-stream maximum and average velocities showed how these parameters change along the study reach for two simulated discharges of 1,040 ft 3 /s and 2,790 ft 3 /s. The profile plots for the simulated streamflow of 1,040 ft 3 /s show that the highest velocities are associated with the constructed sheet-pile replacement structure. Results for the simulated streamflow of 2,790 ft 3 /s indicate that the geometry of the 7800 South Bridge causes more backwater and higher velocities than the constructed sheet-pile replacement structure.

Utah↗

Characterizing the distribution of an endangered salmonid using environmental DNA analysis

Determining species distributions accurately is crucial to developing conservation and management strategies for imperiled species, but a challenging task for small populations. We evaluated the efficacy of environmental DNA (eDNA) analysis for improving detection and thus potentially refining the known distribution of Chinook salmon ( Oncorhynchus tshawytscha ) in the Methow and Okanogan Subbasins of the Upper Columbia River, which span the border between Washington, USA and British Columbia, Canada. We developed an assay to target a 90 base pair sequence of Chinook DNA and used quantitative polymerase chain reaction (qPCR) to quantify the amount of Chinook eDNA in triplicate 1-L water samples collected at 48 stream locations in June and again in August 2012. The overall probability of detecting Chinook with our eDNA method in areas within the known distribution was 0.77 (±0.05 SE). Detection probability was lower in June (0.62, ±0.08 SE) during high flows and at the beginning of spring Chinook migration than during base flows in August (0.93, ±0.04 SE). In the Methow subbasin, mean eDNA concentration was higher in August compared to June, especially in smaller tributaries, probably resulting from the arrival of spring Chinook adults, reduced discharge, or both. Chinook eDNA concentrations did not appear to change in the Okanogan subbasin from June to August. Contrary to our expectations about downstream eDNA accumulation, Chinook eDNA did not decrease in concentration in upstream reaches (0–120 km). Further examination of factors influencing spatial distribution of eDNA in lotic systems may allow for greater inference of local population densities along stream networks or watersheds. These results demonstrate the potential effectiveness of eDNA detection methods for determining landscape-level distribution of anadromous salmonids in large river systems.

British Columbia, Washington↗

Survival of migrating Atlantic salmon smolts through the Penobscot River, Maine: A pre-restoration assessment

Survival, distribution, and behavior of hatchery ( n = 493) and naturally reared ( n = 133) smolts of Atlantic salmon Salmo salar migrating through the Penobscot River and estuary in Maine were evaluated with acoustic telemetry in 2005 and 2006. Survival and use of a secondary migration path (the Stillwater Branch) were estimated with a multistate mark–recapture model. Higher rates of mortality per kilometer (range = 0.01–0.22) were observed near release sites and within reaches that contained three particular dams: Howland, West Enfield, and Milford dams. Estimated total survival of tagged hatchery smolts through entire individual reaches containing those dams ranged from 0.52 ( 0.18) to 0.94 ( 0.09), whereas survival through most of the reaches without dams exceeded 0.95. Of those smolts that survived to the Penobscot River–Stillwater Branch split at Marsh Island, most (≥74%) remained in the main stem around Marsh Island, where they experienced lower survival than fish that used the Stillwater Branch. Movement rates of hatchery-reared smolts were significantly lower through reaches containing dams than through reaches that lacked dams. Smolts arriving at dams during the day experienced longer delays than smolts arriving at night. Planned removal of two dams in this system is expected to enhance the passage of smolts through the main-stem corridor. However, the dams currently scheduled for removal (Great Works and Veazie dams) had less influence on smolt survival than some of the dams that will remain. This case study shows that by examining prerestoration migration dynamics throughout entire river systems rather than just in the vicinity of particular dams, tracking studies can help prioritize restoration efforts or predict the costs and benefits of future hydrosystem changes.

Maine↗

Review of oil families and their petroleum systems of the Williston Basin

The petroleum system concept was first applied in 1974 (Dow/Williams) to identify three oil systems in the Williston Basin, and recent studies have expanded the number to at least nine. This paper reviews the petroleum geochemistry, oil-oil, and oil-source correlations of the oil systems of the Williston Basin, providing a new perspective and some new findings. Petroleum systems with a known source (documented oil-source correlation) include the Red River (Ordovician), Winnipegosis (Devonian), Bakken (Devonian-Mississippian), Madison (Mississippian), and Tyler (Pennsylvanian) systems. Petroleum systems with an identified source rock but no documented oil-source correlation are considered hypothetical and include the Winnipeg (Ordovician), Duperow (Devonian), and Birdbear (Devonian). The Deadwood (Cambrian-Ordovician) petroleum system is speculative because a good oil-prone source rock has not been identified. The stratigraphic distribution of the oil families from each system is generally limited to the same formation from which they were sourced due to efficient seals and a paucity of vertical migration pathways, but some notable exceptions do occur. Oil bulk properties such as API gravity, sulfur content, and pour point are much underutilized in the recent geochemical literature and are found to be useful here in differentiating oil families. The Red River petroleum system has two oil families that can be differentiated based on pour point. The oils in the Madison petroleum system can be divided into two families based on API gravity-sulfur content relationships, with one family derived from Type II-S kerogen and the other family derived from Type II kerogen with medium sulfur content. The Tyler petroleum system of the Williston Basin may be distinguished from the Heath-Tyler petroleum system in central Montana based on differences in geology and petroleum geochemistry, with Tyler petroleum system oils having a higher pour point and lower sulfur content.

Williston Basin↗

Evaluation of stream capture related to groundwater pumping, middle Humboldt River Basin, Nevada

Historical, future, and potential stream capture from groundwater pumping in the middle Humboldt River Basin (MHRB), Nevada, is estimated using a calibrated numerical groundwater flow model. The model was developed to estimate (1) stream capture, which is the change in flux between the groundwater system and the Humboldt River and tributaries, and (2) change in streamflow, which is the change in streamflow estimated for the Imlay gage on the Humboldt River (U.S. Geological Survey streamgage 10333000). Historical stream capture for water years (WYs) 1961–2015 is estimated using recorded and estimated groundwater pumping during that period. Future (predictive) stream capture was based on historical stresses (WYs 1961–2015) using a scenario that simulated non-mine pumping from WY 2015 at a uniform rate for 100 years into the future. Potential stream capture throughout the middle Humboldt River Basin from groundwater pumping during varying durations of time are presented in a series of capture maps. Maps also are presented that show the potential to capture from groundwater evapotranspiration, as well as the storage changes for pumping duration of 100 years. Estimates of historical stream capture from the mainstem Humboldt River during the early 1960s are less than 400 acre-feet per year (acre-ft/yr) when groundwater withdrawals and pumping rates were relatively small compared to more recent times. In the late 1980s and early 1990s, groundwater withdrawals increased and estimated historical stream capture also increased from about 4,000 acre-ft/yr in the late 1980s and early 1990s to as much as 18,800 acre-feet (acre-ft) in WY 1998. In WY 2015, estimated historical stream capture declined to about 13,000 acre-ft because of decreasing groundwater withdrawals and lower streamflow during the drought of WYs 2012–15, resulting in less stream water available for capture. Stream capture was estimated for 100 years into the future based on WY 2015 non-mine pumping rates and mine-dewatering activity through WY 2015. Stream capture is forecast to increase to about 23,000 acre-ft/yr, and streamflow in the Humboldt River could decrease by as much as 19,000 acre-ft/yr. Pumping for mine-dewatering and the associated discharge of that water affects streamflow in the Humboldt River at Imlay, Nevada (U.S. Geological Survey streamgage 10333000). Historically, from WYs 1991 to 2015, streamflow was greater at Imlay gage during active mine-dewatering from mine-water discharge operations and increased by as much as 105,000 acre-ft in WY 1998. The increase was attributed mostly to the discharge of groundwater from mine-related dewatering operations directly into the mainstem Humboldt River or its tributaries, with some of this increase associated with return flows from discharge to rapid infiltration basins. Results indicate that streamflow at Imlay gage is expected to decrease by as much as 1,600 acre-ft/yr 30 years after mine-related pumping and discharge are discontinued. The streamflow reductions at the Imlay gage are expected to then decrease to around 500 acre-ft/yr, 100 years after mine-related pumping and discharge are discontinued. Potential capture maps were produced for pumping durations of 10, 25, 50, and 100 years. Capture map results indicate that areas of greater potential stream capture occur adjacent to the Humboldt River and for upstream tributaries areas north of the Humboldt River.

Nevada↗

Detrital zircon U-Pb reconnaissance of the Franciscan subduction complex in northwestern California

In northwestern California, the Franciscan subduction complex has been subdivided into seven major tectonostratigraphic units. We report U-Pb ages of &asymp;2400 detrital zircon grains from 26 sandstone samples from 5 of these units. Here, we tabulate each unit's interpreted predominant sediment source areas and depositional age range, ordered from the oldest to the youngest unit. (1) Yolla Bolly terrane: nearby Sierra Nevada batholith (SNB); ca. 118 to 98 Ma. Rare fossils had indicated that this unit was mostly 151-137 Ma, but it is mostly much younger. (2) Central Belt: SND; ca. 103 too 53 Ma (but poorly constrained), again mostly younger than previously thought. (3) Yager terrane: distant Idaho batholith (IB); ca. 52 to 50 Ma. Much of the Yager's detritus was shed during major core complex extension and erosion in Idaho that started 53 Ma. An eocene Princeton River-Princeton submarine canyon system transported this detritus to the Great Valley forearc basin and thence to the Franciscan trench. (4) Coastal terrane: mostly IB, &plusmn;SNB, &plusmn;nearby Cascade arc, &plusmn;Nevada Cenozoic ignimbrite belt; 52 to <32 Ma. (5) King Range terrane: dominated by IB and SNB zircons; parts 16-14 Ma based on microfossils. Overall, some Franciscan units are younger than previously thought, making them more compatible with models for the growth of subduction complexes by positive accretion. From ca. 118 to 70 Ma, Franciscan sediments were sourced mainly from the nearby Sierra Nevada region and were isolated from southwestern US and Mexican sources. From 53 to 49 Ma, the Franciscan was sourced from both Idaho and the Sierra Nevada. By 37-32 Ma, input from Idaho had ceased. The influx from Idaho probably reflects major tectonism in Idaho, Oregon, and Washington, plus development of a through-going Princeton River to California, rather than radical changes in the subduction system at the Franciscan trench itself.

California↗

Combining genetic, isotopic, and field data to better describe the influence of dams and diversions on Burbot Movement in the Wind River Drainage, Wyoming

Dams and water diversions fragment habitat, entrain fish, and alter fish movement. Many Burbot Lota lota populations are declining, with dams and water diversions thought to be a major threat. We used multiple methods to identify Burbot movement patterns and assess entrainment into an irrigation system in the Wind River, Wyoming. We assessed seasonal movement of Burbot with a mark–recapture (PIT tagging) study, natal origins of entrained fish with otolith microchemistry, and historic movement with genotyping by sequencing. We found limited evidence of entrainment in irrigation waters across all approaches. The mark–recapture study indicated that out‐migration from potential source populations could be influenced by flow regime but was generally low. Otolith and genomic results suggested the presence of a self‐sustaining population within the irrigation network. We conclude that emigration from natural tributary populations is not the current source of the majority of Burbot found in irrigation waters. Instead, reservoir and irrigation canal construction has created novel habitat in which Burbot have established a population. Using a multi‐scale approach increased our inferential abilities and mechanistic understanding of movement patterns between natural and managed systems.

Wyoming↗

Water-quality sampling plan for evaluating the distribution of bigheaded carps in the Illinois Waterway

The two nonnative invasive bigheaded carp species (bighead carp Hypophthalmichthys nobilis and silver carp H. molitrix ) that were accidentally released in the 1970s have spread widely into the rivers and waterways of the Mississippi River Basin. First detected in the lower reaches of the Illinois Waterway (IWW, the combined Illinois River-Des Plaines River-Chicago Area Waterway System) in the 1990s, bighead and silver carps moved quickly upstream, approaching the Chicago Area Waterway System. The potential of substantial negative ecological and economic impact to the Great Lakes from the presence of these species is a concern. However, since 2006, the population front of bigheaded carps has remained in the vicinity of Joliet, Illinois, near river mile 278. This reach of the IWW is characterized by stark changes in habitat, water quality, and food resources as the waterway transitions from a primarily agricultural landscape to a metropolitan and industrial canal system. This report describes a 2015 plan for sampling the IWW to establish water-quality conditions that might be contributing to the apparent stalling of the population front of bigheaded carps in this reach. A detailed description of the study plan, Lagrangian-style sampling approach, selected analytes, sampling methods and protocols are provided. Hydrographs from streamflow-gaging stations show IWW conditions during the 2015 sampling runs.

Illinois↗

Water quality in the Missouri River alluvial aquifer near the Independence, Missouri, well field, 1997–2018

Groundwater-quality data collected from 1997 through 2018 from 68 monitoring locations open to the Missouri River alluvial aquifer (hereafter referred to as the “alluvial aquifer”) near the Independence, Missouri, well field were analyzed by the U.S. Geological Survey, in cooperation with the City of Independence, Missouri. This analysis was done to assess the quality of the water in the alluvial aquifer near the well field, identify trends in water quality in the alluvial aquifer from 1997 through 2018, assess hydraulic interaction between the Missouri River and the groundwater system, identify potential threats to the potability of the water extracted from the well field, and identify ways to improve the monitoring effort. Water-quality data indicate that water from the Missouri River recharges the alluvial aquifer. Recharge is exacerbated by pumping from the well field so that the quality of the water pumped from the well field is similar to that of the river for many constituents. Water-quality data indicate that the alluvial aquifer is under oxygen- and nitrate-reducing conditions, and iron- and manganese-reducing conditions are present in most of the alluvial aquifer. Sulfate-reducing conditions are present along the northern and western parts of the monitoring network north of the Missouri River. Maximum contaminant levels for antimony, arsenic, barium, lead, selenium, and uranium were exceeded in at least one sample, and the median concentrations of arsenic exceeded the maximum contaminant level in several monitoring wells on the periphery of the well field. Secondary maximum contaminant levels were exceeded for iron, manganese, and sulfate in multiple wells. Low concentrations of a variety of organic compounds, primarily derived from recharge from the Missouri River with lesser amounts potentially derived from application at land surface in the study area, are present in the alluvial aquifer and in water extracted from the well field.

Missouri↗

Hydrology of the Mississippi River Valley alluvial aquifer, south- central United States — A preliminary assessment of the regional flow system

Data describing the aquifer framework and steady-state regional flow were assembled for the Mississippi River Valley alluvial aquifer north of Vicksburg, Mississippi. The aquifer is part of the Mississippi embayment aquifer system. The 60 to 140 ft thick alluvial aquifer grades from gravel at the bottom to fine sand near the top. It is overlain by the Mississippi River Valley confining unit, which consists of 10 to 50 ft of silts, clays, and fine-grained sands. Underlying units consist of alternating sands and clays corresponding to regional hydrogeologic units of the Mississippi embayment aquifer system. The three-layer finite difference model was used to simulate two-dimensional confined or unconfined steady-state flow for predevelopment and 1972. Preliminary analysis of predevelopment flow indicates that recharge to the alluvial aquifer was from underlying aquifers and the confining unit. Rivers accounted for almost all discharge. Pumpage from the alluvial aquifer for irrigation substantially changed regional flow direction toward depressions in the potentiometric surface. Recharge from rivers and the confining unit increased and recharge from underlying aquifers decreased. Discharge to underlying aquifers increased and discharge to rivers decreased. Recharge from the confining unit reached a maximum of 1.3 inch/year for large parts of the aquifer. Nearly all drawdown exceeding 20 ft was at two locations in Arkansas--the Grande Prairie region, and west of Crowleys Ridge. Model results indicate the importance of leakage from rivers and the confining unite to providing recharge to sustain large amounts of pumpage from the alluvial aquifer.

Mississippi River Valley alluvial aquifer↗

Effects of groundwater withdrawals from the Hurricane Fault zone on discharge of saline water from Pah Tempe Springs, Washington County, Utah

Pah Tempe Springs, located in Washington County, Utah, contribute about 95,000 tons of dissolved solids annually along a 1,500-foot gaining reach of the Virgin River. The river gains more than 10 cubic feet per second along the reach as thermal, saline springwater discharges from dozens of orifices located along the riverbed and above the river on both banks. The spring complex discharges from fractured Permian Toroweap Limestone where the river crosses the north-south trending Hurricane Fault. The Bureau of Reclamation Colorado River Basin Salinity Control Program is evaluating the feasibility of capturing and desalinizing the discharge of Pah Tempe Springs to improve downstream water quality in the Virgin River. The most viable plan, identified by the Bureau of Reclamation in early studies, is to capture spring discharge by pumping thermal groundwater from within the Hurricane Fault footwall damage zone and to treat this water prior to returning it to the river. Three multiple-day interference tests were conducted between November 2013 and November 2014, wherein thermal groundwater was pumped from fractured carbonate rock in the fault damage zone at rates of up to 7 cubic feet per second. Pumping periods for these tests lasted approximately 66, 74, and 67 hours, respectively, and the tests occurred with controlled streamflows of approximately 2.0, 3.5, and 24.5 cubic feet per second, respectively, in the Virgin River upstream from the springs reach. Specific conductance, water temperature, and discharge were monitored continuously in the river (upstream and downstream of the springs reach) at selected individual springs, and in the pumping discharge during each of the tests. Water levels were monitored in three observation wells screened in the thermal system. Periodic stream and groundwater samples were analyzed for dissolved-solids concentration and the stable isotopes of oxygen and hydrogen. Additional discrete measurements of field parameters (specific conductance, water temperature, pH, and discharge) were made at up to 26 sites along the springs reach. These data demonstrate the interaction between the saline, thermal groundwater system and the Virgin River, and provide estimates of reductions in dissolved-solids loads to the river. The interference tests show that pumping thermal groundwater from the shallow carbonate aquifer adjacent to the springs is effective at capturing high dissolved-solids loads discharging from Pah Tempe Springs before they enter the Virgin River. Discharge measurements made in the Virgin River downstream of the springs reach show that streamflow is reduced by approximately the amount pumped, indicating that complete capture of thermal discharge is possible. During the February 2014 test, the dissolved-solids load removed by pumping (190 tons per day) was approximately equal to the dissolved-solids load reduction observed in the river below the springs reach, indicating near 100-percent efficient capture of spring-sourced dissolved solids. However, an observed decrease in temperature and specific conductance of the pumping discharge during the high-flow test in November 2014 showed that capture of the cool, fresh river water can occur and is more likely at a higher stage in the Virgin River.

Utah↗

Development of a database-driven system for simulating water temperature in the lower Yakima River main stem, Washington, for various climate scenarios

A model for simulating daily maximum and mean water temperatures was developed by linking two existing models: one developed by the U.S. Geological Survey and one developed by the Bureau of Reclamation. The study area included the lower Yakima River main stem between the Roza Dam and West Richland, Washington. To automate execution of the labor-intensive models, a database-driven model automation program was developed to decrease operation costs, to reduce user error, and to provide the capability to perform simulations quickly for multiple management and climate change scenarios. Microsoft© SQL Server 2008 R2 Integration Services packages were developed to (1) integrate climate, flow, and stream geometry data from diverse sources (such as weather stations, a hydrologic model, and field measurements) into a single relational database; (2) programmatically generate heavily formatted model input files; (3) iteratively run water temperature simulations; (4) process simulation results for export to other models; and (5) create a database-driven infrastructure that facilitated experimentation with a variety of scenarios, node permutations, weather data, and hydrologic conditions while minimizing costs of running the model with various model configurations. As a proof-of-concept exercise, water temperatures were simulated for a "Current Conditions" scenario, where local weather data from 1980 through 2005 were used as input, and for "Plus 1" and "Plus 2" climate warming scenarios, where the average annual air temperatures used in the Current Conditions scenario were increased by 1degree Celsius (°C) and by 2°C, respectively. Average monthly mean daily water temperatures simulated for the Current Conditions scenario were compared to measured values at the Bureau of Reclamation Hydromet gage at Kiona, Washington, for 2002-05. Differences ranged between 1.9° and 1.1°C for February, March, May, and June, and were less than 0.8°C for the remaining months of the year. The difference between current conditions and measured monthly values for the two warmest months (July and August) were 0.5°C and 0.2°C, respectively. The model predicted that water temperature generally becomes less sensitive to air temperature increases as the distance from the mouth of the river decreases. As a consequence, the difference between climate warming scenarios also decreased. The pattern of decreasing sensitivity is most pronounced from August to October. Interactive graphing tools were developed to explore the relative sensitivity of average monthly and mean daily water temperature to increases in air temperature for model output locations along the lower Yakima River main stem.

Washington↗

Analysis of stream-aquifer system interrelationships in the Big Blue and Little Blue River basins in Gage and Jefferson Counties, Nebraska

Seepage measurements made during the fall of 1978 at 21 sites in the Big Blue River basin and at 35 sites in the Little Blue River basin were used to determine stream gains or losses in 20 drainage areas in the Big Blue River basin and 31 drainage areas in the Little Blue River basin. Analyses of data from these seepage measurements and of available hydrogeologic data indicate that the most significant ground-water contributions to streamflow in the Big Blue and Little Blue River drainage basins in Gage and Jefferson Counties, Nebr., occur where a direct hydraulic connection exists between a stream and buried coarse-grained deposits of Quaternary age. These deposits occur in two buried bedrock valleys that trend east-northeasterly across the area. The largest ground-water contributions to streamflow in the Big Blue River occur in the reaches of the river between the mouth of Mud Creek and the dam at Blue Springs (about 13 cubic feet per second) and between the mouth of Turkey Creek and the Beatrice gaging station (about 22 cubic feet per second). Ground-water contributions to streamflow also occur in two tributaries of the Big Blue River: Bear Creek (4.39 cubic feet per second) and Big Indian Creek (6.23 cubic feet per second). In the Little Blue River basin the largest contributions to streamflow occur between the mouths of Big Sandy and Little Sandy Creeks (about 6.5 cubic feet per second) and in the vicinity of Fairbury (about 16 cubic feet per second). A ground-water contribution to streamflow of about 6.5 cubic feet per second also occurs in Rose Creek, a tributary of the Little Blue River.

Nebraska↗

System-scale airborne electromagnetic surveys in the lower Mississippi River Valley support multidisciplinary applications

The lower Mississippi River Valley spans over 200,000 square kilometres in parts of seven states, encompassing areas of critical groundwater supplies, natural hazards, infrastructure, and low-lying coastal regions. From 2018 - 2022, the U.S. Geological Survey acquired over 82,000 line-kilometres of airborne electromagnetic, radiometric, and magnetic data over this region to provide comprehensive and systematic information about subsurface geologic and hydrologic properties that support multiple scientific and societal interests. Most of the data were acquired on a regional grid of west-east flight lines separated by 3 - 6 kilometres; however, several high-resolution inset grids with line spacing as close as 200 m were acquired in targeted areas of interest. Approximately 8,000 line-kilometres were acquired along streams and rivers to characterise the potential for surface water-groundwater connection, and another 6,000 line-kilometres were acquired along the Mississippi and Arkansas River levees to characterise this critical infrastructure. Here, we present a summary of the data along with several examples of how they are being used to inform regional groundwater model development, inferences of groundwater salinity, identification of faults in the New Madrid seismic zone, and levee infrastructure.

lower Mississippi River Valley↗

Review of habitat classification schemes appropriate to streams, rivers, and connecting channels in the Great Lakes drainage system

Studies of lotic classification, zonation, and distribution carried out since the turn of the century were reviewed for their use in developing a habitat classification scheme for flowing water in the Great Lakes drainage basin. Seventy papers, dealing mainly with fish but including benthos, were organized into four somewhat distinct groups. A heirarchical scale of habitat measurements is suggested, and sources of data and inventory methods, including statistical treatment, are reviewed. An outline is also provided for developing a classification system for riverine habitat in the Great Lakes drainage basin.

Book chapter↗

Science information to support Missouri River Scaphirhynchus albus (pallid sturgeon) effects analysis

The Missouri River Pallid Sturgeon Effects Analysis (EA) was commissioned by the U.S. Army Corps of Engineers to develop a foundation of understanding of how pallid sturgeon ( Scaphirhynchus albus ) population dynamics are linked to management actions in the Missouri River. The EA consists of several steps: (1) development of comprehensive, conceptual ecological models illustrating pallid sturgeon population dynamics and links to management actions and other drivers; (2) compilation and assessment of available scientific literature, databases, and models; (3) development of predictive, quantitative models to explore the system dynamics and population responses to management actions; and (4) analysis and assessment of effects of system operations and actions on species&rsquo; habitats and populations. This report addresses the second objective, compilation and assessment of relevant information. Scientific information on pallid sturgeon and its environment has grown substantially during the last decade. Presently available (2015) information indicates that stocked sturgeon are surviving and growing, and that wild and hatchery sturgeon are spawning in the wild. However, natural recruitment to age-1 and older has not been detected since systematic sampling began in 2005. Population models indicate the sensitivity of population growth to certain demographic variables, in particular early-life stage survival and perhaps adult fecundity. This report documents the existing population models for the pallid sturgeon, and the substantial quantities of information developed through the Pallid Sturgeon Population Assessment Program (PSPAP), the Habitat Assessment and Monitoring Program (HAMP), the Comprehensive Sturgeon Research Project (CSRP), range-wide genetics databases, and related research studies. The reference database compiled for the EA consists of over 190 peer-reviewed documents specifically related to pallid sturgeon and over 12,000 references on the Missouri River system and related species. Notwithstanding the large quantity of information available, the EA faces challenges in synthesizing the information into useful, quantitative models. In particular, critical demographic parameters for population models remain uncertain and the functional relationships between the two main categories of physical management action&mdash;changes in flow regime and reengineering channel form&mdash;and pallid sturgeon survival responses are obscure. In addition, there is an overarching uncertainty about how physical management actions interact with propagation management actions in view of evolving understanding of genetic structuring of the pallid sturgeon population. Synthesis efforts are also challenged by the fragmentation of information sources among projects and agencies; one objective of this report is to facilitate future assessments by providing documentation of what information is available and where.

Iowa, Kansas, Missouri, Montana, Nebraska, North D↗

Updates to CE-QUAL-W2 models for select U.S. Army Corps of Engineers reservoirs in the Willamette Valley Project and an inter-reservoir reach of the Middle Fork Willamette River, northwestern Oregon

Mechanistic models capable of simulating hydrodynamics and water temperature in rivers and reservoirs are valuable tools for investigating thermal conditions and their relation to dam operations and streamflow in river basins where upstream water storage and management decisions have an important influence on river reaches with threatened fish populations. In particular, models allow managers to investigate how new, untried operations or hypothetical structures might influence streamflow and temperature conditions downstream. CE-QUAL-W2 is a two-dimensional (laterally averaged) hydrodynamic water-quality model that has previously been used to investigate the downstream effects of dam operations and other anthropogenic influences on stream temperature in the Willamette River Basin in northwestern Oregon, a region with two populations of fish species designated as threatened under the Endangered Species Act. By linking CE-QUAL-W2 river models to models of upstream, large Willamette Valley Project dams and reservoirs, these models can be used to investigate how dam operations at individual dams can influence streamflow and thermal conditions in downstream river reaches as an integrated system. Integrated model simulations that include the large dams and reservoirs linked to downstream river reaches can help managers develop a better understanding of tradeoffs associated with potential retrofits or operational changes across the multipurpose dams in the Willamette Valley Project, the effect of dam management on downstream tributaries and the Willamette River, and the resulting potential effect on threatened fish populations and habitat conditions. River models capable of simulating river corridors downstream from U.S. Army Corps of Engineers dams were previously updated and integrated to simulate conditions that occurred from March through October of 2011 (a cool and wet year), 2015 (a hot and dry year), and 2016 (a moderately hot and dry year) using CE-QUAL-W2 version 4.2. These river models encompass the following: Coast Fork Willamette and Middle Fork Willamette Rivers, the Row River, and Fall Creek downstream from Cottage Grove, Dexter, Dorena, and Fall Creek Dams, respectively; South Fork McKenzie River downstream from Cougar Dam; McKenzie River downstream from its confluence with the South Fork McKenzie River; South Santiam River downstream from Foster Dam; North Santiam River downstream from Big Cliff Dam; and Willamette River from its start at the confluence of the Middle Fork Willamette and Coast Fork Willamette Rivers to Willamette Falls (river mile 26.0; near West Linn, Oregon). This report documents model modifications, boundary condition data sources or estimation methods, and goodness-of-fit statistics for six CE-QUAL-W2 reservoir models and one river model upstream from the existing river models. These models simulate (1) Hills Creek Lake; (2) Lookout Point Lake and Dexter Reservoir on the Middle Fork Willamette River; (3) the Middle Fork Willamette River reach between Hills Creek Dam upstream and Lookout Point Lake downstream; (4) Cougar Reservoir on the South Fork McKenzie River; (5) Green Peter Lake on the Middle Santiam River and Foster Lake on the South Santiam River; and (6) Detroit Lake and (7) Big Cliff Reservoir on the North Santiam River. These CE-QUAL-W2 models were built by a variety of researchers to simulate a range of conditions in past years; this report documents their upgrade to U.S. Geological Survey (USGS) edition 7 of version 4.2 of CE-QUAL-W2 and updates each model to simulate conditions from January through December of 2011, 2015, and 2016. Also included in this report is an explanation of modifications to the CE-QUAL-W2 source code that constitute USGS edition 7 of CE-QUAL-W2 version 4.2. Each of the models described in this report can be run in isolation or linked to downstream models as a “system model” to simulate conditions in tributaries and (or) in the Willamette Valley Project as a whole. As part of the model updates described in this report, some model parameters were adjusted to improve stability or decrease model error, and boundary conditions including meteorological, hydrologic, and temperature inputs were developed and updated for model years 2011, 2015, and 2016, as necessary. In some cases, the data sources used to drive previous model versions were no longer available, which required the development and checking of new data sources or estimation techniques. Goodness-of-fit statistics for outflow from the dams and in simulated river reaches generally show a good model fit, with the models simulating subdaily water temperatures at most comparable locations with a mean absolute error of generally less than 1 degree Celsius (°C) and a reasonably low bias. Model simulation of the thermal vertical profiles in each reservoir also produced an overall mean absolute error of generally less than 1 °C for all 3 years, with the exception of the Hills Creek Lake Model and the Cougar Reservoir Model in years when the reservoirs did not fill (2015 and 2016). Both of these models have known calibration issues and tend to be sensitive to the choice of certain structural parameters in the model. Overall, the calibration process was focused on obtaining model settings that led to realistic water temperature predictions in all 3 years (2011, 2015, and 2016) without over-calibrating specifically to any single year. A complete investigation of model error for these reservoir submodels was beyond the scope of this investigation but could be undertaken in the future if better model performance for these two reservoirs is desired.

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