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At least 1,531 records · Page 85Linked to original sources
USGS2022

Seasonal context of bristly cave crayfish Cambarus setosus habitat use and life history

Cave crayfishes are important members of groundwater communities, but many cave crayfishes are threatened or endangered. Unfortunately, we lack basic life history and ecological data that are needed for developing conservation plans for most cave crayfishes, especially the role of seasonal and annual fluctuations in structuring populations. Therefore, we determined the seasonal life history and habitat use of Cambarus setosus in Smallin Civil War Cave, Christian County, Missouri, United States. We conducted visual crayfish surveys over a 400 m section of the cave from 2006 to 2019. We used multinomial logit, multiple linear regression, and logistic regression models to estimate crayfish substrate, water depth, and water velocity use, respectively. All models included sex, carapace length, season, distance into the cave, and interactions between all variables and sex as predictor terms. We also used t-tests to assess morphometric differences between male and female crayfish. Six mark-recapture events (2010 to 2019) were used to estimate population sizes using a nil-recapture model. We attempted to age eight individuals using gastric mill bands, but annual bands were not discernable. We found reproductively active males during all seasons. We captured one ovigerous female during the spring, though ovigerous females were observed during show cave tours during spring, summer, and autumn. Male C. setosus were more likely to use homogenous and heterogeneous rock substrates and shallower and calmer water when compared to females; however, these relationships varied based on distance into the cave and season. Females sampled were significantly larger than males, and males regenerated chelae more often. Minimum population size estimates ranged from 9 to 159 individuals and indicated the population was relatively stable. Our data provide both a baseline population estimate for comparison with future studies and valuable trait information that is often lacking but useful for developing conservation efforts.

Missouri↗
USGS2004

Invasive herbivory: resident Canada geese and the decline of wild rice along the tidal Patuxent River

While concern grows over the increasing numbers of exotic mute swans ( Cygnus olor ) on the Chesapeake Bay, less attention seems to be given to the highly familiar and native Canada goose ( Branta canadensis ) which has over time developed unprecedented nonmigratory, or resident, populations. Although nuisance flocks of Canada geese have been well advertised at city parks, athletic fields, and golf courses over the past three decades, recent expansion of populations to an estimated one million birds in the Atlantic Flyway, and to over 100,000 in Maryland, carries a threat of broader ecological consequences.

Maryland↗
USGS2009

Critical uncertainties and research needs for the restoration and conservation of native lampreys in North America

We briefly reviewed the literature, queried selected researchers, and drew upon our own experience to describe some critical uncertainties and research needs for the conservation and restoration of native lampreys in North America. We parsed the uncertainties and research needs into five general categories: (1) population status; (2) systematics; (3) passage at dams, screens, and other structures; (4) species identification in the field; and (5) geneal biology and ecology. For each topic, we describe why the subject is important for lampreys, briefly smmarize our current state of knowledge, and discuss the key data or information gaps.

American Fisheries Society Symposium↗
USGS2004

Oak-black bear relationships in southeastern uplands

Bears ( Ursus americanus ) primarily occur in upland habitats in the Southeast because uplands were the last to be developed for agriculture and were more likely to become publicly owned. National parks and forests created in the early to mid-1900s served as sources to supply surrounding uplands with bears. Bears could not survive in southeastern uplands without oak mast. Bear reproductive and mortality rates in the region have been shown to be directly linked with acorn production. Masting is thought to be an adaptation by oaks to satiate predators during good acorn years, thus ensuring that the remainder will germinate. Acorn predator populations, however, cannot respond numerically to increased acorn production because the masting is episodic and synchronous. Consequently, bears have developed physiological, behavioral, and ecological adaptations to cope with such food shortages. Despite such adaptations, upland hardwood forests in the Southeast are of lower quality than they once were. The loss of the American chestnut ( Castanea dentata ), higrading, and soil degradation have markedly decreased the carrying capacity for bears and other wildlife. Other changes such as recent forest management practices, forest fragmentation, invasion by the gypsy moth ( Lymantria dispar ), and oak decline threaten to further degrade the capability of southeastern uplands to support bears.

Report↗
USGS2014

Fitness in animals correlates with proximity to discontinuities in body mass distributions.

Discontinuous structure in landscapes may cause discontinuous, aggregated species body-mass patterns, reflecting the scales of structure available to animal communities within a landscape. Empirical analyses have shown that the location of species within body mass aggregations, which reflect this scale-specific organization, is non-random with regard to several ecological phenomena, including species extinctions. The propensity of declining species to have body masses proximate to discontinuities suggests that transition zones between scaling regimes ultimately decreases the ecological fitness for some species. We test this proposition using vulnerable and unthreatened fish species in Mediterranean streams with differing levels of human impact. We show that the proximity to discontinuities in body mass aggregations (“distance-to-edge”) of more vs. less fit individuals within vulnerable and unthreatened populations differs. Specifically, regression analysis between the scaled mass index, a proxy of animal fitness, and distance-to-edge reveals negative and positive relationships for vulnerable and unthreatened species, respectively. That is, fitness is higher close to discontinuities in vulnerable populations and toward the center of body mass aggregation groups in unthreatened populations. Our results demonstrate the suitability of the discontinuity framework for scrutinizing non-random patterns of environmental impact in populations. Further exploration of the usefulness of this method across other ecosystems and organism groups is warranted.

Ecological Complexity↗
USGS2023

Evaluating management alternatives for Wyoming elk feedgrounds in consideration of chronic wasting disease

Executive Summary The authors used decision and modeling analyses to evaluate management alternatives for a decision on whether to permit Cervus canadensis (elk) feeding on two sites on Bridger-Teton National Forest, Dell Creek and Forest Park. Supplemental feeding of elk could increase the transmission of chronic wasting disease (CWD) locally and disease spread regionally, potentially impacting elk populations over time with wider implications for Odocoileus hemionus (mule deer) and Odocoileus virginianus (white-tailed deer) populations and hunting, tourism, and regional revenue. Supplemental feeding is thought to improve overwinter elk survival and reduce the commingling of elk with cattle during months when brucellosis transmission risk is highest. We worked with the U.S. Department of Agriculture Forest Service to identify their fundamental objectives and associated performance metrics related to this feedground decision. We then developed disease and habitat selection models to quantify the effect of four management alternatives on select performance metrics. The four alternatives were to continue to permit feeding, phaseout permits to feed in three years, permit feeding on an emergency basis, or stop permitting feeding. In this report, we present methods and summarized results on disease and habitat selection models and summaries of other performance metrics analyzed by BIO-WEST, Inc. and Cirrus Ecological Solutions as part of an Environmental Impact Statement. Data from Wyoming Game and Fish Department (WGFD) supported the assumption that supplemental elk feeding allows for larger elk populations in a region. We documented that herd units (HU) without feedgrounds had 23 percent lower densities of elk per area of winter range when compared against HUs with feedgrounds, after accounting for differences in sightability of elk during counts on and off feedgrounds. Thus, throughout our analyses, we assumed feedground closures would reduce elk carrying capacity resulting in an average decline of previously fed elk population segments by 23 percent (5th and 95th percentiles = [11 percent, 35 percent]) by year 20. Most of that decline occurred within the first few years after a feedground ceases to operate. We used a panel of CWD experts to help estimate CWD trans-mission in fed and unfed elk population segments. In aggregate, the expert panel estimated that median values of direct and indirect transmission of CWD are expected to be 1.9 and 4 times higher, respectively, in fed elk populations compared to unfed elk. We used these disease transmission estimates in combination with local elk demographic rates and carrying capacity estimates to project disease and population dynamics. In year 20, we predicted CWD prevalence would increase to 42 percent (5th and 95th percentiles = [29 percent, 55 percent]), and 13 percent (5th and 95th percentiles = [4 percent, 26 percent]) on average for fed and unfed elk population segments, respectively, given a starting prevalence of 1.6 percent. The prevalence estimates for the unfed elk population segments are in the range of previous observations of CWD in elk in the western United States. The average CWD prevalence from 2016 to 2018 in the unfed elk population of Wind Cave National Park in South Dakota was 18 percent overall but up to 30 percent in some regions (Sargeant and others, 2021). Meanwhile, CWD prevalence in the Iron Mountain and Laramie Peak elk herds in Wyoming from 2016 to 2018 was 14 percent and 7 percent, respectively, despite being present since at least 2002 (Wyoming Game and Fish Department, 2020b). From 2016 to 2020, elk that were fed at Dell Creek and Forest Park constituted on average 12–20 percent of the total elk on their respective HUs. As a result, the differences between management alternatives are modest when considering the closure of only one feedground on a HU. The no feeding alternative for Forest Park resulted in a CWD prevalence of 17 percent (SD = 7 percent) in the Afton HU compared to 20 percent (SD = 7 percent) with continued feeding by year 20. In the Upper Green River HU, no feeding on Dell Creek resulted in a CWD prevalence of 27 percent (SD = 6 percent) compared to 30 percent (SD = 5 percent) with continued feeding. In terms of disease-associated mortality, we predicted the closure of Forest Park and Dell Creek feedgrounds would reduce the total number of CWD mortalities by 9 percent in the Upper Green River HU and 26 percent in the Afton HU during the 20-year timespan. Our spatial analyses predicted that management alternative effects vary by HU as a function of private property and other wildlife winter ranges proximity relative to feedground location. The predicted number of elk abortions on private land, as a proxy for brucellosis risk to cattle, may increase by 8–21 percent in the absence of feeding at Dell Creek and Forest Park. Eight feedgrounds are located on Bridger-Teton National Forest, all of which have permits that have expired or will expire prior to 2028. In addition, WGFD could change their management of feedgrounds given new information; therefore, we also assessed the cumulative effects of continued feeding, phaseout, and no feeding management alternatives across five HUs south of Jackson, Wyoming (Afton HU, Fall Creek HU, Piney HU, Pinedale HU, and Upper Green River HU). These five HUs ranged from about 41 to 85 percent of the elk herd using feedgrounds, which corresponded to a CWD prevalence at year 20 of 23–34 percent if all feedgrounds in those five HUs remained open relative to 12 to 14 percent if all feedgrounds were closed. We predicted feedground closures may result in immediate reductions in population size relative to alternatives that continue feeding (for example, continued feeding and emergency feeding alternatives); however, over longer periods of time, CWD-associated mortality leads to larger population reductions. The no feeding alternative resulted in higher elk population sizes compared to the continued feeding alternative after about 10 years of implementation. Delayed action under a phaseout alternative resulted in increasing the CWD prevalence to 20 percent relative to 12 to 14 percent, on average, without feeding on HUs with a large population of fed elk such as the Upper Green River HU. Summarizing our cumulative results across all five of the analyzed HUs, we predicted continued feeding will lead to fewer elk by year 20 (mean = 8,300, standard deviation [SD] = 740) compared to no feeding at U.S. Department of Agri-culture Forest Service sites (10,700, SD = 890). The closure of all feedgrounds was projected to result in the largest elk populations at year 20 (12,500, SD = 980). No feeding at all sites also resulted in the largest cumulative harvest of 57,700 (SD = 2,600) compared to 51,100 (SD = 3,800) for continued feeding at all current feedground sites on the five HUs. Continued feeding also resulted in the lowest brucellosis costs to producers ($194,600, SD = $11,500) compared to no feeding on all feedgrounds ($243,000, SD = $13,700). Assuming moderate reductions in hunter interest because of increasing CWD prevalence in elk, we predicted that no feeding resulted in regional revenues generated by hunting activities of $190 million (SD = $10 million) compared to $173 million (SD = $10 million) for continued feeding over the 20-year timeframe. Recent CWD detections in mule deer and elk in Grand Teton National Park has elevated the importance of the cur-rent decision on whether, and how, to permit elk feeding on Dell Creek and Forest Park and the management of the other feedgrounds. Aggressive male harvest has slowed, but not stopped, the increasing prevalence of CWD in mule deer (Conner and others, 2021). It is unclear whether harvest management can be an effective tool to slow the spread of CWD in elk. There are also no effective treatments or vaccines for CWD, and it is unlikely that any will be developed that can be easily deployed in the near future. Thus, reducing artificial aggregations is one of the few management approaches suggested by the Western Association of Fish and Wildlife Agencies (Almberg and others, 2017). Future surveillance and monitoring can be designed to resolve uncertainties that can improve future decision-making. If feedgrounds close, research could quantify elk population reductions in the absence of feeding, the redistribution of fed elk to other places, or the consequences of elk movement on private property. If feedgrounds remain open, research could assess how rapidly CWD spreads in artificial aggregations of elk; however, surveillance programs would need to be designed with sufficient power to detect initial changes of CWD prevalence. Delaying action on feedground management was projected to be costly. Results of the phaseout alternative relative to the no feeding alternative suggested a 3-year delay was enough for substantial long-term changes in CWD prevalence. The long-term persistence of infectious CWD prions in the environment suggests that feedground management decisions may have long-lasting consequences. Our results indicated tradeoffs in the ability of a management agency to achieve all their objectives, and all management alternatives resulted in significant reductions in elk population size. This report contains the foundational elements for formal decision analysis methods, which can be implemented to help decision makers transparently evaluate the consequences of decision alternatives and identify the set of actions that best achieve agency and stakeholder priorities.

Wyoming↗
USGS2025

Weather, habitat area, connectivity, and number of patches influence breeding ecology of ring-necked pheasants

Understanding habitat selection is critical in habitat prioritization for species of conservation and management concern. Information on habitat selection is particularly important for grassland bird species whose populations have suffered steep declines over the last few decades. We assessed ring-necked pheasants' ( Phasianus colchicus ) habitat selection in a dynamic agricultural landscape. The population dynamics of pheasants are partially related to nest survival, which may be influenced by the quality of nesting habitat. Consequently, knowledge of vegetation composition and structural characteristics associated with the selection and survival of nests would help inform management decisions to improve nest success. We monitored nests from 103 radio-collared pheasants inhabiting an agricultural landscape in South Dakota, USA, from 2017–2019 to determine the effect of landscape composition and configuration on nest-site selection and nest survival. We explored nesting behavior at 2 orders of selection: resource selection within the home range (third order) and selection of specific resource items from a resource patch (fourth order). Proportion of row crop and connectivity of row crop was negatively associated with nest-site selection at the third order. At the fourth order, pheasants tended to select for taller vegetation and greater percent grass cover than at paired random sites. Pheasants also selected areas with more grasslands. A 1% increase in grass cover and proportion of grassland increased the odds of nest-site selection by 1% and 2%, respectively. Connectivity of row crop patches was negatively associated with daily nest survival. We also evaluated factors affecting pheasant brood-site selection. A 1-unit increase in grass cover and Hemiptera biomass increased the odds of brood-site selection by 4%. The probability of brood-site selection also increased with fewer row crop patches. Weather played a crucial role in driving nest survival. The consideration of local weather trends and regional variation in habitat can inform habitat management for pheasants. Pheasant populations may benefit from research that identifies thermal landscapes and land management techniques that promote cooler microclimates for nesting and brood-rearing activities.

South Dakota↗
USGS2021

Seal body condition and atmospheric circulation patterns influence polar bear body condition, recruitment, and feeding ecology in the Chukchi Sea

Polar bears ( Ursus maritimus ) are experiencing loss of sea ice habitats used to access their marine mammal prey. Simultaneously, ocean warming is changing ecosystems that support marine mammal populations. The interactive effects of sea ice and prey are not well understood yet may explain spatial‐temporal variation in the response of polar bears to sea ice loss. Here, we examined the potential combined effects of sea ice, seal body condition and atmospheric circulation patterns on the body condition, recruitment, diet, and feeding probability of 469 polar bears captured in the Chukchi Sea, 2008‐2017. The body condition of ringed seals ( Pusa hispida ), the primary prey of females and subadults, was related to dietary proportions of ringed seal, feeding probability, and the body condition of females and cubs. In contrast, adult males consumed more bearded seals ( Erignathus barbatus ) and exhibited better condition when bearded seal body condition was higher. The litter size, number of yearlings per adult female, and the condition of dependent young were higher following winters characterized by low Arctic Oscillation (AO) conditions, consistent with a growing number of studies. Body condition, recruitment, and feeding probability were either not associated or negatively associated with sea ice conditions, suggesting that, unlike some subpopulations, Chukchi Sea bears are not currently limited by sea ice availability. However, spring sea ice cover declined 2% per year during our study reaching levels not previously observed in the satellite record and resulting in the loss of polar bear hunting and seal pupping habitat. Our study suggests that the status of ice seal populations is likely an important factor that can either compound or mitigate the response of polar bears to sea ice loss over the short‐term. In the long‐term, neither polar bears nor their prey are likely robust to limitless loss of their sea ice habitat.

Alaska↗
USGS2009

Life history and ecology of Cambarus halli (Hobbs)

The life history of Cambarus halli, a crayfish endemic to the Tallapoosa River Basin, GA, was studied at four sites within the Tallapoosa River. Two sites had allopatric populations of C. halli, and two sites had populations of C. halli sympatric with C. englishi. Three age classes existed across sites. For Cambarus halli, total number of pleopodal eggs was positively related to carapace length, but egg size was only weakly positively related to carapace length. Cambarus halli were smaller across age classes at sympatric sites, but had greater growth rates than at allopatric sites. Cambarus halli density estimates were lower at sympatric sites, while proportions of reproductively active age-1 and age-2 individuals were higher at allopatric sites (63% vs. 33%).

Southeastern Naturalist↗
USGS1993

Status and ecology of kittiwakes ( Rissa tridactyla and R. brevirostris ) in the North Pacific

Black-legged Kittiwakes ( Rissa tridactyla ) are widely distributed in the subarctic North Pacific and adjacent seas, with a total breeding population of about 2.6 million individuals. Red-legged Kittiwakes ( R. brevirostris ) breed in four locations, and at least 95% of their estimated world population of 230,000 birds nest on one island (St. George, Pribilof Islands). Compared to Black-legged Kittiwakes in Britain, both species in Alaska have exhibited poor productivity since at least the mid-1970s. The situation worsened during the 1980s, with recent (1985-1989) estimates of annual productivity averaging 0.19 young per nest. The frequency of "colony failures" (<0.1 young per nest) exceeded 50% in Alaska between 1985 and 1989. Low productivity has involved, to varying degrees, the failure of many birds to lay eggs, reduced clutch sizes, low hatching success, and poor chick survival. There is evidence of population declines in some colonies of Black-legged Kittiwakes, but other colonies appear to be stable or increasing. High adult survival may account for the relative stability of Black-legged Kittiwakes, but widespread declines are anticipated unless productivity improves. The evidence suggests that poor productivity results from low surface availability of key prey species.

Conference Paper↗
USGS2020

Editorial: Contributions of behavior and physiology to conservation biology

Conservation biology is a rapidly evolving discipline, with its synthetic, multidisciplinary framework expanding extensively in recent years. Seemingly disparate disciplines, such as behavior and physiology, are being integrated into this discipline's growing portfolio, resulting in diverse tools that can help develop conservation solutions. Behavior and physiology have traditionally been considered separate fields, yet their integration can provide a more comprehensive approach to developing solutions to conservation and management problems. However, demonstrations are needed of how behavior and physiology—either separately or combined—have contributed to conservation success. Examining species' vulnerabilities to extinction through the lenses of behavior and physiology can provide insight into the mechanisms that drive population declines and extirpations. Our goal is to increase awareness of the benefit of combining behavioral and physiological tools to improve conservation management decisions. Such studies can also help strengthen the basis for evidence-based conservation which, in some cases, has been previously lacking. The diverse studies in our Research Topic illustrate key examples of ways that behavior and physiology can be incorporated into conservation biology. Three main themes emerged from the invited papers with respect to their relevance to conservation: (1) Stress physiology, (2) indicators of health and disease dynamics, (3) and movement ecology. But these themes were also intertwined, thus showing the importance of integrating multiple fields of research to successfully address questions about conservation biology. Two mini reviews discuss the importance of examining how stress physiology may affect individual fitness and capacity to cope with change which, ultimately, affects the resiliency of populations. Walls and Gabor, in their mini review, promoted combining studies of behavior and physiology to aid in developing conservation strategies for amphibians, which could provide conservation managers with workable solutions to global environmental change. Walls and Gabor also pointed out that studies of behavior are useful to understand how native amphibian species respond to invasive predators. This is supported by Roznik et al. who combined physiology and behavior for a more holistic understanding of the impacts of competition between native and invasive frogs. These authors found that invasive Cuban tree frogs outperformed two native species in jump length and speed, offsetting the costs of dehydration. This work also ties in well to a review by Joly, who indicated the importance of exploring movement ecology (on multiple spatial scales) of invasive species to provide insights for invasive species management. Walls and Gabor also emphasized that more studies on phenological shifts of species in response to recent climate change are needed, as explored by Bókony et al. with birds. These authors found that bird species varied their migratory behaviors in response to contemporary climate change which, in turn, influenced subsequent trends in population size.

Frontiers in Ecology and Evolution↗
USGS2026

Post-hatch ecology, diet, and first migration of juvenile Alaskan Bar-tailed Godwits

Life stages between hatching and adult recruitment are poorly described for most migratory shorebird species and represent a critical knowledge gap in understanding long-term population dynamics. We conducted a pilot study on the Seward Peninsula, Alaska, to assess the feasibility of following juvenile Bar-tailed Godwits Limosa lapponica baueri from their breeding grounds to their non-breeding grounds in New Zealand and Australia. Radio-tracked broods were highly mobile and moved hundreds to thousands of meters per day. They used low-elevation wetlands with dense shrub cover when younger, and more open, tundra-dominated ridgetops when older. Using DNA metabarcoding analysis of fecal samples, we found that chick diet consisted largely of flying insects (e.g. Tenthredinidae and Ichneumonidae) and small gastropods and appeared to increase in diversity with chick age. We followed one brood to near-fledging (ca. 26 days old) and deployed 5-g satellite transmitters on three chicks. One of these subsequently moved to the Yukon-Kuskokwim Delta, from where it flew 11 days and an estimated 13,391 km to Tasmania, which is the longest non-stop flight recorded for landbirds. These results provide the first information on the ecology of pre- and post-fledging young Bar-tailed Godwits in Alaska, and will inform future efforts to study this important life stage.

Alaska↗
USGS2021

Coffee plantations, hurricanes and avian resiliency: Insights from occupancy, and local colonization and extinction rates in Puerto Rico

Insights on impacts and resiliency of avian species with respect to hurricanes in the Caribbean have largely focused on responses measured in protected habitats. We assessed avian responses in non-protected habitat, specifically shade-restored coffee plantations, because their structural complexity retains many attributes of secondary forests, and may contribute to landscape scale species resiliency. We tallied species richness, and estimated occupancy probability of 12 resident avian species, after adjusting for imperfect detection, to assess the impact of hurricane Maria (20 September 2017) in the context of two stages of shade-restored coffee plantations. For 5 of those species, we also estimated local colonization and extinction probabilities to assess their prospect of rebounding (resiliency). We used survey data collected March-June 2015-2017 (pre-hurricane) and 2018 (post-hurricane) in 58 coffee farms and satellite imagery to assess vegetation structure. Restored farms were grouped into two categories based on time-since-restoration: newly-restored and fully-restored. We predicted that mean percent forest cover in fully-restored farms (~30-40%) would revert to levels in newly-restored farms (<15%), with concomitant changes in occupancy by avian species. As predicted, mean percent forest cover (16.17 4.27%) in fully-restored farms post-hurricane reverted to pre-hurricane levels in newly-restored farms (15.00 5.61%). The loss represented 30-38% relative to the pre-hurricane cover levels. Detections of focal species dropped an average of 41% post-hurricane, with associated reductions in occupancy for 9/11 species. Occupancy of the Puerto Rican Bullfinch and Puerto Rican Spindalis reverted to levels detected in newly-restored plantations prior to the hurricane as predicted. Prospects of rebounding were more likely for species with invariant or increases in colonization probability (e.g., Yellow-faced Grassquit, Northern Mockingbird, Puerto Rican Spindalis). Rebounding for frugivores like the Puerto Rican Bullfinch would be protracted given that colonization rates dropped from 0.56 0.12 (pre-hurricane) to 0.04 0.2 (post-hurricane), regardless of restoration stage. Our work showed that the avian community associated with restored coffee farms exhibited as high degree of ecological resistance as the similarity in species composition before and after the hurricane was 81%, and all 12 focal species continued to occupy farms under both restoration stages. The prospect of the focal species to rebound (resiliency) was specific-specific, and in some cases, mediated by their affinity to a particular farm restoration stage. The strength of hurricanes is projected to intensify with global warming. Pockets of undamaged or partially damaged shade-grown or fully-restored coffee plantations may contribute to species resiliency by increasing landscape level habitat redundancy, and facilitate habitat shifts to secure food resources or harbor source populations to colonize recovering, hurricane-damaged habitat tracts.

Greater Antilles↗
USGS2016

Spatial and temporal heterogeneity of infectious hematopoietic necrosis virus in Pacific Northwest salmonids

The aquatic rhaboviral pathogen infectious hematopoietic necrosis virus (IHNV) causes acute disease in juvenile fish of a number of populations of Pacific salmonid species. Heavily managed in both marine and freshwater environments, these fish species are cultured during the juvenile stage in freshwater conservation hatcheries, where IHNV is one of the top three infectious diseases that cause serious morbidity and mortality. Therefore, a comprehensive study of viral genetic surveillance data representing 2590 field isolates collected between 1958 and 2014 was conducted to determine the spatial and temporal patterns of IHNV in the Pacific Northwest of the contiguous United States. Prevalence of infection varied over time, fluctuating over a rough 5–7 year cycle. The genetic analysis revealed numerous subgroups of IHNV, each of which exhibited spatial heterogeneity. Within all subgroups, dominant genetic types were apparent, though the temporal patterns of emergence of these types varied among subgroups. Finally, the affinity or fidelity of subgroups to specific host species also varied, where UC subgroup viruses exhibited a more generalist profile and all other subgroups exhibited a specialist profile. These complex patterns are likely synergistically driven by numerous ecological, pathobiological, and anthropogenic factors. Since only a few anthropogenic factors are candidates for managed intervention aimed at improving the health of threatened or endangered salmonid fish populations, determining the relative impact of these factors is a high priority for future studies.

Infection, Genetics and Evolution↗
USGS2025

Invasive predatory fish occupies highest trophic position leading to expansion of isotopic niches in a riverine food web

Invasive species are drivers of ecological change with the potential to reshape the structure and function of terrestrial and aquatic ecosystems. The invasive flathead catfish ( Pylodictis olivaris ) is an opportunistic predator that has established a rapidly growing population in the Susquehanna River, Pennsylvania, USA, since they were first detected in 2002. Although the predatory effects of invasive catfishes on native fish communities have been documented, the effects of invasion on riverine food webs are poorly understood. This study quantified the effects of invasive flathead catfish on the trophic position (TP) and isotopic niche of the river's food web by comparing invaded and non-invaded sites. In addition to flathead catfish, the food web components examined included crayfish, minnows, and two ecologically and socioeconomically important fish species: the smallmouth bass ( Micropterus dolomieu ) and channel catfish ( Ictalurus punctatus ). We found that flathead catfish occupied the highest TP, with a posterior mean TP of 3.08 (95% credible interval = [2.71, 3.42]), exceeding that of the two resident fish predators, the smallmouth bass and channel catfish. The TP of the resident channel catfish, which occupies a similar ecological niche, declined after flathead catfish invasion. In fact, there was a 0.92 posterior probability that channel catfish TP was lower in invaded sites than at non-invaded sites. Using a Bayesian bivariate ellipses analysis, we found overwhelming evidence of isotopic niche expansion and overlap for all components of the food web in the presence of flathead catfish. These findings support the “trophic disruption hypothesis,” where an introduced species prompts resident species to change diets in an attempt to avoid competition and predation following invasion. Our results indicate that flathead catfish invasion is altering food web structure and energy flow in a large riverine ecosystem and contributes to the breadth of knowledge regarding how ecosystems may respond to the introduction of a large predatory fish species.

Pennsylvania↗
USGS2021

Using social values in the prioritization of research: Quantitative examples and generalizations

Identifying critical uncertainties about ecological systems can help prioritize research efforts intended to inform management decisions. However, exclusively focusing on the ecological system neglects the objectives of natural resource managers and the associated social values tied to risks and rewards of actions. I demonstrate how to prioritize research efforts for a harvested population by applying expected value of perfect information (EVPI) to harvest decisions made with a density-independent matrix population model. Research priorities identified by EVPI diverge from priorities identified by matrix elasticity analyses that ignore social utility. Using a density-dependent harvest model, the value of information about the intrinsic productivity of a population is shown to be sensitive to the socially determined penalty for implementing a harvest rate that deviates from the goal because of imperfection in estimation. Synthesis and applications . The effect of including social values into harvest decision-making depends on the assumed population model, uncertainty in population vital rates, and the particular form of the utility function used to represent risk/reward of harvest. EVPI analyses that include perceived utility of different outcomes can be used by managers seeking to optimize monitoring and research spending. Collaboration between applied ecologists and social scientists that quantitatively measure peoples' values is needed in many structured decision-making processes.

Ecology and Evolution↗
USGS2018

Estimating distemper virus dynamics among wolves and grizzly bears using serology and Bayesian state‐space models

Many parasites infect multiple hosts, but estimating the transmission across host species remains a key challenge in disease ecology. We investigated the within and across host species dynamics of canine distemper virus (CDV) in grizzly bears ( Ursus arctos ) and wolves ( Canis lupus ) of the Greater Yellowstone Ecosystem (GYE). We hypothesized that grizzly bears may be more likely to be exposed to CDV during outbreaks in the wolf population because grizzly bears often displace wolves while scavenging carcasses. We used serological data collected from 1984 to 2014 in conjunction with Bayesian state‐space models to infer the temporal dynamics of CDV. These models accounted for the unknown timing of pathogen exposure, and we assessed how different testing thresholds and the potential for testing errors affected our conclusions. We identified three main CDV outbreaks (1999, 2005, and 2008) in wolves, which were more obvious when we used higher diagnostic thresholds to qualify as seropositive. There was some evidence for increased exposure rates in grizzly bears in 2005, but the magnitude of the wolf effect on bear exposures was poorly estimated and depended upon our prior distributions. Grizzly bears were exposed to CDV prior to wolf reintroduction and during time periods outside of known wolf outbreaks, thus wolves are only one of several potential routes for grizzly bear exposures. Our modeling approach accounts for several of the shortcomings of serological data and is applicable to many wildlife disease systems, but is most informative when testing intervals are short. CDV circulates in a wide range of carnivore species, but it remains unclear whether the disease persists locally within the GYE carnivore community or is periodically reintroduced from distant regions with larger host populations.

Ecology and Evolution↗
USGS2001

Mourning dove productivity in California during 1992-95: Was it sufficient to balance mortality?

Mourning dove ( Zenaida macroura ) populations have declined steadily in the western United States since 1966. We investigated the role of recruitment in this long-term problem by studying nesting ecology of mourning doves from March to September 1992-95, in the northern Central Valley, California, USA. We studied nesting doves in blue oak woodlands ( Quercus douglasii ), willow-cottonwood riparian habitats ( Salix spp., Populus fremontii ), and commercial walnut, prune, pistachio, and cherry orchards. We used 3,047 nests for our analyses. Doves initiated nests from 14 March to 28 August; nesting season lengths ranged from 105 to 158 days. Only 2-5% of nests remained active after 1 September each year, and latest dates that young fledged ranged from 28 August to 21 September. Mayfield estimates of nest success rates varied inconsistently among study areas; annual success rates ranged from 35-59% for incubation, 49-79% for brooding, and 22-45% for total. Akaike's Information Criteria (AIC) analysis showed that total nest success was higher during years with relatively warm-dry springs (March-May, 1992 and 1994 [35-45% success]) than years with relatively cool-wet springs (1993 and 1995 [22-37% success]). Additionally, AIC analysis showed that fledglings produced/pair and fledglings/nesting attempt were highest during the warm-dry years. Likewise, we recorded more total pairs, nests, and total fledglings, and longer nesting seasons during the warm-dry years. The lower limit of the 95% confidence interval for fledglings produced/pair for all years exceeded the value of 2.5 previously estimated with banding data from 1967-74 as the value required to maintain breeding populations in California. Thus, if our productivity estimates reflected the general population, and annual survival rates had not changed, recruitment should have been adequate to produce an increasing population. Since this was not occurring, managers should complement population surveys with annual banding and harvest surveys to enable thorough examination of the relationships among survival, productivity, and abundance.

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