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At least 1,531 records · Page 85Linked to original sources
USGS2011

Aquatic ecology of the Elwha River estuary prior to dam removal: Chapter 7 in Coastal habitats of the Elwha River, Washington--biological and physical patterns and processes prior to dam removal

The removal of two long-standing dams on the Elwha River in Washington State will initiate a suite of biological and physical changes to the estuary at the river mouth. Estuaries represent a transition between freshwater and saltwater, have unique assemblages of plants and animals, and are a critical habitat for some salmon species as they migrate to the ocean. This chapter summarizes a number of studies in the Elwha River estuary, and focuses on physical and biological aspects of the ecosystem that are expected to change following dam removal. Included are data sets that summarize (1) water chemistry samples collected over a 16 month period; (2) beach seining activities targeted toward describing the fish assemblage of the estuary and migratory patterns of juvenile salmon; (3) descriptions of the aquatic and terrestrial invertebrate communities in the estuary, which represent an important food source for juvenile fish and are important water quality indicators; and (4) the diet and growth patterns of juvenile Chinook salmon in the lower Elwha River and estuary. These data represent baseline conditions of the ecosystem after nearly a century of changes due to the dams and will be useful in monitoring the changes to the river and estuary following dam removal.

Washington↗
USGS2016

Alaska Arctic marine fish ecology catalog

The marine fishes in waters of the United States north of the Bering Strait have received new and increased scientific attention over the past decade (2005–15) in conjunction with frontier qualities of the region and societal concerns about the effects of Arctic climate change. Commercial fisheries are negligible in the Chukchi and Beaufort Seas, but many marine species have important traditional and cultural values to Alaska Native residents. Although baseline conditions are rapidly changing, effective decisions about research and monitoring investments must be based on reliable information and plausible future scenarios. For the first time, this synthesis presents a comprehensive evaluation of the marine fish fauna from both seas in a single reference. Although many unknowns and uncertainties remain in the scientific understanding, information presented here is foundational with respect to understanding marine ecosystems and addressing dual missions of the U.S. Department of the Interior for energy development and resource conservation.

Scientific Investigations Report↗
USGS2024

Evaluation and review of ecology-focused stream studies to support cooperative monitoring, Fountain Creek Basin, Colorado

The U.S. Geological Survey, in cooperation with Colorado Springs Utilities and Colorado Springs Stormwater Enterprise, synthesized previous studies and evaluated recent monitoring data to understand the distribution of fish and invertebrates in the Fountain Creek Basin and documented response to streamflow, water temperature, and water quality. The goal was to identify opportunities for aligning data collection to help maximize information gained from additional monitoring. Fifty-two publications were compiled from the literature that were completed within the study area between 1964 and 2022. Of these publications, 19 were fish and invertebrate focused. Overall, the distribution of fish and invertebrates in the Fountain Creek Basin has changed since the early 1900s. The occurrence of several fish species has increased or decreased since 2003, and a few species have not been collected in more than 100 years. Several mayfly, stonefly, and caddisfly taxa once common at several locations before 2000 are now rarely encountered, and those that now occur more frequently are associated with warmer-water streams. Decreasing invertebrate multimetric index values were noted at six locations, and the invasive Potamopyrgus antipodarum (New Zealand mud snail) is now established at two locations and occurs at several others, but in low numbers. Various streamflow characteristics were frequently noted to affect spatial and temporal patterns in fish and invertebrate communities, including early development and recruitment of Platygobio gracilis (flathead chub). Water quality and temperature contributed to patterns in aquatic communities, but less is known about the direct effects as these data were inconsistently available. Reach-scale habitat also contributed to patterns in aquatic communities, especially measures associated with the streambank, stream channel, and composition of streambed substrate. Moving forward, aligning consistent streamflow, water temperature, water quality, and geomorphic data collection at fish-, invertebrate-, and habitat-monitoring locations could maximize information gained from monitoring efforts and potentially inform evolving management activities and interests within the basin.

Colorado↗
USGS2003

Nutrient, trace-element, and ecological history of Musky Bay, Lac Courte Oreilles, Wisconsin, as inferred from sediment cores

Sediment cores were collected from Musky Bay, Lac Courte Oreilles, and from surrounding areas in 1999 and 2001 to determine whether the water quality of Musky Bay has declined during the last 100 years or more as a result of human activity, specifically cottage development and cranberry farming. Selected cores were analyzed for sedimentation rates, nutrients, minor and trace elements, biogenic silica, diatom assemblages, and pollen over the past several decades. Two cranberry bogs constructed along Musky Bay in 1939 and the early 1950s were substantially expanded between 1950?62 and between 1980?98. Cottage development on Musky Bay has occurred at a steady rate since about 1930, although currently housing density on Musky Bay is one-third to one-half the housing density surrounding three other Lac Courte Oreilles bays. Sedimentation rates were reconstructed for a core from Musky Bay by use of three lead radioisotope models and the cesium-137 profile. The historical average mass and linear sedimentation rates for Musky Bay are 0.023 grams per square centimeter per year and 0.84 centimeters per year, respectively, for the period of about 1936?90. There is also limited evidence that sedimentation rates may have increased after the mid-1990s. Historical changes in input of organic carbon, nitrogen, phosphorus, and sulfur to Musky Bay could not be directly identified from concentration profiles of these elements because of the potential for postdepositional migration and recycling. Minor- and trace-element profiles from the Musky Bay core possibly reflect historical changes in the input of clastic material over time, as well as potential changes in atmospheric deposition inputs. The input of clastic material to the bay increased slightly after European settlement and possibly in the 1930s through 1950s. Concentrations of copper in the Musky Bay core increased steadily through the early to mid-1900s until about 1980 and appear to reflect inputs from atmospheric deposition. Aluminum- normalized concentrations of calcium, copper, nickel, and zinc increased in the Musky Bay core in the mid-1990s. However, concentrations of these elements in surficial sediment from Musky Bay were similar to concentrations in other Lac Courte Oreilles bays, nearby lakes, and soils and were below probable effects concentrations for aquatic life. Biogenic-silica, diatom-community, and pollen profiles indicate that Musky Bay has become more eutrophic since about 1940 with the onset of cottage development and cranberry farming. The water quality of the bay has especially degraded during the last 25 years with increased growth of aquatic plants and the onset of a floating algal mat during the last decade. Biogenic silica data indicate that diatom production has consistently increased since the 1930s. Diatom assemblage profiles indicate a shift from low-nutrient species to higher-nutrient species during the 1940s and that aquatic plants reached their present density and/or composition during the 1970s. The diatom Fragilaria capucina (indicative of algal mat) greatly increased during the mid-1990s. Pollen data indicate that milfoil, which often becomes more common with elevated nutrients, became more widespread after 1920. The pollen data also indicate that wild rice was present in the eastern end of Musky Bay during the late 1800s and the early 1900s but disappeared after about 1920, probably because of water-level changes more so than eutrophication.

Wisconsin↗
USGS1982

Effects of a floodwater-retarding structure on the hydrology and ecology of Trout Creek in southwestern Wisconsin

The primary effects of a floodwater-retarding structure (FRS) on the streamflow of Trout Creek, Wisconsin, are attenuation of flood peaks and extension of the time base of flood hydrographs. Reduction of flood peaks ranged from 58 to 91 percent during the study period from 1975 to 1979. There is an inverse relation between sediment concentration and outflow from the FRS during floods. As water went into storage in the flood pool in March 1976, the daily-mean total-sediment concentration in the FRS outflow dropped from 562 to 147 milligrams per liter. Sediment concentration subsequently increased to 809 milligrams per liter as the discharge from the FRS dropped; concentrations remained more than 400 milligrams per liter for several weeks thereafter. Most sediment stored in the flood pool during flood flows is released from the reservoir during subsequent reduced discharge. Sediment trapping efficiency of the FRS was about 7 percent for the 4-year period of the study. The bankfull capacity of the channel was reduced from 154 cubic feet per second upstream from the flood pool of the FRS to 65 cubic feet per second just downstream from the FRS. This latter discharge corresponds closely to the normal FRS outflow of 58 to 71 cubic feet per second during floods. Mean bankfull depth downstream from the FRS has adjusted to a value 45 percent less than upstream from the structure due to sedimentation of materials transported from the FRS during reduced flows. The hydraulic geometry and relationships between channel geometry and drainage area indicate little effect of the FRS near the mouth of Trout Creek, 2.4 miles downstream from the FRS. The arthropod fauna of Trout Creek is large and diverse. No effects of the FRS on these fauna were observed from April 1975 to October 1979. From fall 1975 to winter 1978, the most important factor contributing to increased brown trout egg survival and fry emergence in Trout Creek during a single reproductive season is higher water temperatures in the upper reaches of the stream. The FRS was not found to have any significant effect on trout reproduction during that period. From 1960 to 1979, winter floods seem to have had the greatest adverse effect on the survival of brown trout eggs and sac fry. Although construction of the FRS has eliminated some spawning gravels in the flood pool owing to sedimentation, the wild trout have adapted by using spawning grounds above the flood pool more extensively and intensively. The FRS has not blocked the upstream migration of spawning trout, but it has eliminated similar migrations of fish that compete with and prey on the trout. Controlled streamflows downstream from the FRS have had a stabilizing influence on the limited trout reproduction in this region.

Wisconsin↗
USGS1996

Water-quality assessment of southern Florida: An overview of available information on surface- and ground-water quality and ecology

This report summarizes water-quality conditions, issues of concern, and management efforts underway in southern Florida. The report is designed to provide a conceptual framework for the Southern Florida National Water Quality Assessment (NAWQA) study that began in 1994. The report makes reference to the most important water-quality literature pertaining to southern Florida, to water-quality studies that are underway or planned, and to topics which are of high priority in the study unit. These topics include: the availability and suit ability of water for competing demands; nutrient enrichment of the Everglades; transport, degradation, and effects of pesticides; and the sources and cycling of mercury in the ecosystem. The report also includes a retrospective analysis and conceptual presentation of nutrient loading, which is a high priority for the national NAWQA Program and for regional water-quality managers. Nutrient contributions from point and nonpoint sources are estimated for nine basins in the study area and are discussed in relation to land use. Fertilizer is the dominant source of phosphorus in eight basins and the dominant source of nitrogen in at least five basins. Atmospheric sources of nitrogen contribute more than 20 percent of the total nitrogen input to all basins and are the dominant source of nitrogen input to Lake Okeechobee and the Everglades. Nutrient loads are also estimated in selected canal and river outflows in southern Florida to provide a spatial overview of the magnitude of nutrient loading to coastal waters. Annual phosphorus loads from the Peace River are the highest in the study unit; annual phosphorus loads from the Caloosahatchee River and the major Palm Beach canals are also high, compared to other parts of southern Florida. Estimated annual loads of phosphorus from parts of the Big Cypress Basin and the S-12 water-control structures of the Tamiami Canal are low compared with estimated phosphorus loads in outflows in the northern part of the study unit. Annual nitrogen loads in southern Florida were highest in outflows from the Caloosahatchee River Basin and the major Palm Beach canals. Nitrogen loads in outflows from parts of the Big Cypress subbasin were lower than those estimated to the north.

Florida↗
USGS1988

Hydrology and ecology of the Apalachicola River, Florida : a summary of the river quality assessment

During 1979-81, the U.S. Geological Survey conducted a large-scale study of the Apalachicola River in northwest Florida, the largest and one of the most economically important rivers in the State. Termed the Apalachicola River Quality Assessment, the study emphasized interrelations among hydrodynamics, the flood-plain forest, and the nutrient-detritus flow through the river system to the estuary. This report summarizes major findings of the study. Data on accumulation of toxic substances in sediments and benthic organisms in the river were also collected. Because of the multiple uses of the Apalachicola River system, there are many difficult management decisions. The river is a waterway for shipping; hence there is an economic incentive for modification to facilitate movement of barge traffic. Such modifications include the proposed construction of dams, levees, bend easings, and training dikes; ditching and draining in the flood plain; and dredging and snagging in the river channel. The river is also recognized as an important supplier of detritus, nutrients, and freshwater to the Apalachicola Bay, which maintains an economically important shellfish industry. The importance of this input to the bay creates an incentive to keep the river basin in a natural state. Other values, such as timber harvesting, recreation, sport hunting, nature appreciation, and wildlife habitat, add even more to the difficulty of selecting management strategies. Water and nutrient budgets based on data collected during the river assessment study indicate the relative importance of various inputs and outflows in the system. Waterflow is controlled primarily by rainfall in upstream watersheds and is not greatly affected by local precipitation, ground-water exchanges, or evapotranspiration in the basin. On an annual basis, the total nutrient inflow to the system is nearly equal in quantity to total outflow, but there is a difference between inflow and outflow in the chemical and physical forms in which the nutrients are carried. The flood plain tends to be a net importer of soluble inorganic nutrients and a net exporter of particulate organic material. Analysis of long-term records shows that dam construction in the upstream watersheds and at the Apalachicola headwaters has had little effect on the total annual waterflow but has probably suppressed low-flow extremes. Other effects include riverbed degradation and channelization which have to do with alteration of the habitat for aquatic biota and changes in flood-plain vegetation. Whatever management decisions are made should take into account the impact on the natural flooding cycle. Flooding is crucial to the present flood-plain plant community and to the production, decomposition, and transport of organic material from that community. Permanent, substantial changes in the natural flooding cycle would be likely to induce concomitant changes in the flood-plain environment and in the nutrient and detritus yield to the estuary.

Water Supply Paper↗
USGS2010

Microparasite ecology and health status of common bluestriped snapper Lutjanus kasmira from the Pacific Islands

Common bluestriped snappers Lutjanus kasmira were intentionally introduced into Hawaii from the South Pacific in the 1950s and have become well established throughout the archipelago. We examined health, prevalence and infection intensity of 2 microparasites, coccidia and epitheliocystis-like organisms (ELO), in L. kasmira from their introduced and native range including the islands where translocated fish originated (Tahiti and Marquesas Islands, French Polynesia) and from several other islands (American Samoa, Fiji and New Caledonia). In addition, we did a longitudinal survey of these parasites in the introduced range. Coccidia and ELO were widely distributed and were found on all islands except for New Caledonia. Health indices, as measured by overall organ lesions, body condition and parasite intensity, indicated that fish from Samoa were the least healthy, and fish from Midway (Hawaiian Archipelago) were the healthiest. Microparasite diversity was highest on Midway and Hawaii and lowest on New Caledonia. Infection of coccidia followed an asymptotic size–prevalence curve, whereas that of ELO peaked at larger size classes (27.8 cm). Prevalence and aggregation of both parasites in the host varied dynamically over 8 yr, with prevalence and aggregation of coccidia being consistently higher and lower, respectively, than ELO. We hypothesize that these parasites are enzootic to the Hawaiian Islands and were not introduced with fish from Tahiti or the Marquesas Islands. Host response and aggregation parameters suggest that coccidia exert a negative effect on their host and probably have an indirect life cycle, whereas ELO appears less pathogenic and has a direct life cycle.

Aquatic Biology↗
USGS2024

Foraging ecology of southern sea otters at the northern range extent informs regional population dynamics

Sea otters Enhydra lutris are vital keystone predators throughout the North Pacific that were nearly extirpated during the maritime fur trade. Recovery of southern sea otters E. l. nereis has proceeded slowly, with much of their historical range remaining unoccupied, resulting in reduced ecosystem functioning. Numerous studies have used foraging metrics to assess the population status of southern sea otters throughout their current range, but little is known about the northern range extent, where a stall in expansion has limited recovery. Thus, we collected census and foraging data of sea otters at Año Nuevo State Park, California, from 2019 to 2021 to determine sea otter abundance, diet composition, diet diversity, and average energy intake rate at the northern range edge. We then assessed regional population status by comparing values from Año Nuevo with previously collected data from other locations in California, including high-density, range center sites and low-density, range periphery sites. We found that sea otter density at Año Nuevo was greater than surrounding areas at the northern range periphery, and the average (±95% CI) energy intake (9.51 ± 0.91 kcal min -1 ) more closely resembled values observed at high-density sites. Further, dietary diversity (using the Shannon-Wiener index, H ) was intermediate between previously studied high- and low-density populations ( H = 1.81), with crabs making up the largest proportion of the diet (~56%). Overall, this study highlights possible effects of occupation time and range stagnation, identifies unique aspects of the prey resource base at Año Nuevo, and provides insight into the ongoing lack of northern range expansion.

California↗
USGS2016

Release of suppressed red spruce using canopy gap creation—Ecological restoration in the Central Appalachians

Red spruce ( Picea rubens ) and red spruce-northern hardwood mixed stands once covered as much as 300,000 ha in the Central Appalachians, but now comprise no more than 21,000 ha. Recently, interest in restoration of this forest type has increased because red spruce forests provide habitat for a number of rare animal species. Our study reports the results of an understory red spruce release experiment in hardwood-dominated stands that have a small component of understory red spruce. In 2005, 188 target spruce were identified in sample plots at six locations in central West Virginia. We projected a vertical cylinder above the crown of all target spruces, and in 2007, we performed a release treatment whereby overtopping hardwoods were treated with herbicide using a stem injection technique. Release treatments removed 0–10% (Control), 11–50% (Low), 51–89% (Medium), and ≤90% (High) of the basal area of overtopping trees. We also took canopy photographs at the time of each remeasurement in 2007, 2010, and 2013, and compared basal removal treatments and resulting 2010 canopy openness and understory light values. The high treatment level provided significantly greater six-year dbh and height growth than the other treatment levels. Based on these results, we propose that a tree-centered release approach utilizing small canopy gaps that emulate the historical, gap-phase disturbance regime provides a good strategy for red spruce restoration in hardwood forests where overstory spruce are virtually absent, and where red spruce is largely relegated to the understory.

Natural Areas Journal↗
USGS2022

Restoration for resilience: The role of plant-microbial interactions and seed provenance in ecological restoration

With global efforts to restore grassland ecosystems, researchers and land management practitioners are working to reconstruct habitat that will persist and withstand stresses associated with climate change. Part of these efforts involve movement of plant material potentially adapted to future climate conditions from native habitat or seed production locations to a new restoration site. Restoration practice often follows this plant-centered, top-down approach. However, we suggest that restoration of belowground interactions, namely between plants and arbuscular mycorrhizal fungi or rhizobia, is important for restoring resilient grasslands. In this synthesis we highlight these interactions and offer insight into how their restoration might be included in current grassland restoration practice. Ultimately, restoration of belowground interactions may contribute to grassland habitat that can withstand and respond to future climate uncertainties.

Natural Areas Journal↗
USGS2024

Editorial: From cold seeps to hydrothermal vents: Geology, chemistry, microbiology, and ecology in marine and coastal environments

This Research Topic compiles contemporary studies on cold seeps, hydrothermal vents, mud volcanoes, and related seafloor features that are associated with focused fluid emissions and the transfer of carbon, other chemical species, and sometimes heat from the geosphere to the ocean. Because these features sometimes tap fluids and gas originating kilometers below the seafloor, they provide an important window into deep processes that are otherwise inaccessible to scientists. At the shallow portion of their journey, migrating fluids nearing the seafloor contribute to a range of unique biological, physical, and chemical processes within the sediments themselves and at the sediment-water interface. Seafloor fluid emissions play a critical role in global biogeochemical cycles, ocean chemistry, and possibly even climate change. Seafloor leakage points often emit hydrocarbon gases (especially methane and CO 2 ) and are sometimes the loci for deposition of seafloor minerals that have economic value. A burgeoning area of research focuses on natural products generated at these features, seeking compounds with potential pharmaceutical or other applications. Multidisciplinary studies have become routine for characterization of seafloor fluid emission sites, attesting to the inseparability of geologic, physical, chemical, and biological processes in these settings. It is increasingly common for researchers to combine in a single research cruise: subbottom imaging and seafloor mapping; porewater and water column geochemistry and gas sampling; sediment retrieval for lithologic, biostratigraphic, and solid phase analyses; and studies of benthic and subseafloor communities at the microbial to macrofaunal scales. This multidisciplinary approach has the advantage of ensuring the spatial and temporal coincidence of surveys and samples, an important factor at highly dynamic seafloor fluid emission sites. In addition, researchers often use remotely operated vehicles (ROVs), autonomous underwater vehicles (AUVs), or human-occupied vehicles (HOVs) to record video of the seafloor, compile photomosaics, collect targeted samples, and survey with high-resolution geophysical near-seafloor systems, providing a degree of detail about seafloor fluid emission sites that is unprecedented compared to most areas of the deep ocean. While rarer, long-term cabled observatories or shorter-term deployments of portable observatories are also used at some loci for seafloor fluid flux and are particularly helpful for capturing temporal variations at these dynamic features. Here we summarize the Research Topic’s contribution to multidisciplinary seafloor emission studies in the categories of cold seeps, mud volcanoes, and hydrothermal vents. Figure 1 shows the geographic distribution of the studies in this Research Topic and key features referred to in this Introduction.

Frontiers in Earth Science↗
USGS2022

Editorial: Plant phenology shifts and their ecological and climatic consequences

Climate change is causing plant phenology to shift, with consequences for ecosystems and the Earth’s climate. Over the last decades, the timing of many important phenological events has advanced in spring, such as leaf emergence and flowering, or been delayed in fall, such as leaf coloration and leaf fall. The consequences of such phenological shifts are still largely unknown, but are hypothesized to have cascading effects on ecosystems, carbon and water cycles, and Earths’ climate. With this research topic, we aimed to synthesize and inspire innovative research in plant phenology to address research questions and challenges on the consequences of phenological shifts on ecosystem function and local hydrology. The articles presented here improve our understanding of the physiological mechanisms responsible for the current phenological changes in spring and fall and provide insight into some of the consequences of these changes on hydrological cycles and ecosystem functioning.

Frontiers in Plant Science↗
USGS2026

Exploratory ecology of reintroduced elk in Virginia

Reintroductions of extirpated species are an important tool in wildlife conservation. Understanding how reintroduced populations acclimatize to novel environments can lend insight into social learning that in turn is valuable for assessing reintroduction success and maximizing efficacy of subsequent efforts. During 2012, 2013, and 2014, the Virginia Department of Wildlife Resources implemented soft releases of elk ( Cervus canadensis ) translocated to southwestern Virginia from eastern Kentucky. We investigated home range establishment and post-release movements of these reintroduced elk ( n = 60). We found adults moved farther from the release site than either yearlings or calves (F = 6.93, p = 0.001). Elk released in 2012 and 2013 took similar amounts of time to establish home ranges (median 181 days, range 108–214 days; and median 189 days, range 147–209 days, respectively), but individuals released in 2013 remained closer to the release site ( 𝑥 ̲ = 605.5 m, SD = 335.7 m, closer) presumably by joining established social groups. However, the 2014 cohort generally took longer to establish home ranges (median: 231 days; range: 56–258 days) and moved farthest from the release site ( 𝑥 ̲ = 1360.2 m, SD = 293.9 m, farther than 2012 individuals) possibly due to the larger cohort size and resulting intraspecific competition, or the earlier release date that year. Our findings suggest the number of consecutively released cohorts, the timing of the release, and the composition of age classes for released individuals are important considerations for reintroductions.

Virginia↗