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USGS1999

The ecological condition of estuaries in the Gulf of Mexico

The Gulf of Mexico is a vast natural resource encompassing the coastal areas of western Florida, Alabama, Mississippi, Louisiana, and Texas, as well as a portion of Mexico. Many estuaries flow into the Gulf of Mexico and serve as nursery grounds for fish, habitat for a wide variety of wildlife, shipping routes, and a source of recreation. Estuarine-dependent species constitute more than 95 percent of the commercial fishery harvests from the Gulf of Mexico, and many important recreational fishery species depend on estuaries during some part of their life cycle. Gulf estuaries are diverse and productive ecosystems that provide a variety of valuable resources, including fish and shellfish, recreation, transportation, and water supply. Assessing the overall condition of Gulf of Mexico estuaries required incorporating data from other federal, state, and local monitoring programs to augment the information on ecological indicators collected by the U.S. Environmental Protection Agency’s (USEPA) Environmental Monitoring and Assessment Program (EMAP). The resulting document would provide a synthesis of the available knowledge about the condition of Gulf of Mexico estuaries. This document is intended for use by scientists and other citizens concerned with the ecological condition of estuaries, as well as by managers and lawmakers interested in the sustained use of estuaries for commercial and recreational purposes. It also addresses public concerns about the aesthetic quality of coastal areas vital to tourism and recreation. By producing this report on the ecological condition of estuaries in the Gulf of Mexico, we have taken one step in assessing the health of this environmental resource. We have produced an environmental “report card” to be used as a guide in the evaluation of management decisions and research directions. This report is organized in three parts: (1) an introduction that gives background information on the Gulf of Mexico, estuarine ecology, and the factors that impact estuaries in the gulf, (2) the main section on priority ecological indicators used to measure the condition of estuaries in the gulf and (3) an ecological report card that summarizes the data on ecological indicators and provides a rating of the condition of estuaries in each gulf state and for gulf estuaries overall. Many of the ratings were based on the percent area of estuaries in each state exhibiting degraded or adverse levels of an indicator. Eutrophication, a condition of high nutrients often resulting in low oxygen levels and other adverse effects, is an important water quality concern for estuaries along the gulf coast. The National Oceanic and Atmospheric Administration (NOAA) has compared the Gulf of Mexico to other coastal regions like the middle Atlantic and has ranked the Gulf of Mexico as having the highest number of point sources of nutrients and the highest percentage of land use devoted to agriculture. We evaluated monitoring data for nitrogen, chlorophyll, and dissolved oxygen as indicators of eutrophication. Although most of the estuaries exhibited high nitrogen or chlorophyll or low dissolved oxygen concentrations at least once during a survey, many times these conditions were observed in small rivers or bayous rather than in the entire estuary. Often, the percent area affected was low. The gulf estuaries had moderate conditions overall for nutrients and dissolved oxygen. Definite nutrient problems were observed in >25% of the estuarine area in Louisiana and Texas and definite dissolved oxygen problems were observed in Alabama. Contaminants in estuarine sediments provide evidence of the accumulation of chemicals from anthropogenic sources. We compared the concentrations of sediment contaminants to established guideline values to determine the proportion of estuarine area that could have potential adverse effects on living organisms. Although detectable levels of contaminants were measured in almost every estuary in the Gulf of Mexico, <25% of the estuarine area in all states had contaminant concentrations that exceeded these guidelines. Wetlands are integral parts of estuarine systems. Declining acreage means habitat loss that may be the result of commercial and residential development, hydrologic alterations, or dredge and fill operations. The Gulf of Mexico region contains more than 50% of the coastal wetland acreage in the U.S. and yet it also has the highest rate of coastal wetland loss. Nine of the top ten estuarine drainage areas ranked by total wetland area are in the Gulf of Mexico region. The most current estimates of total wetland loss over the past 200 years range from 41% to 54% for the gulf states. Although coastal wetlands continue to be altered or destroyed, some estimates indicate that the rate of loss has slowed. All gulf states were rated as having severe problems with wetland loss. The condition of benthic (bottom-dwelling) invertebrates, fish and shellfish, birds, and threatened and endangered species was used to evaluate the health of estuarine fauna. Degraded benthic communities inhabited <25% of the estuarine area in all gulf states except for Texas. Commercial fish and shellfish landings may be used as an indicator of population stability while fish biomarkers are used to measure the health of individuals in the population. Commercial landings of the top four fisheries (shrimp, menhaden, blue crab, and oyster) are stable in the gulf states while fish biomarkers indicate fair to poor fish health in Alabama and Texas and good fish health elsewhere. Coastal and marine bird populations appear to be in good condition throughout the gulf. Four threatened or endangered species inhabit coastal areas in the Gulf of Mexico: brown pelican, Gulf sturgeon, manatee, and Kemp’s ridley sea turtle. In general, populations of these species are in good to fair condition in the gulf states. Public health indicators include shellfish bed closures and chemicals found in edible fish tissue. Harvest of shellfish (primarily oyster in the Gulf of Mexico) is restricted or prohibited when concentrations of bacteria or other pathogens reach levels that could impair human health. The gulf states contain the most acreage of shellfish-growing waters in the U.S. but also have the most acreage restricted for harvest. All gulf states except Mississippi have >25% of their shellfish-growing waters restricted for harvest, mostly due to pollution from wastewater treatment plants or other upstream sources. Advisories may be issued that limit consumption when the concentrations of chemicals in fish tissue exceed levels known to be harmful to humans. Although seafood consumption advisories have been issued in all gulf states, the percent of the fish population with high concentrations of contaminants is relatively low in the gulf overall.

Alabama, Florida, Louisiana, Mississippi, Texas↗

USGS2007

Ground-water recharge in the arid and semiarid southwestern United States

Ground-water recharge in the arid and semiarid southwestern United States results from the complex interplay of climate, geology, and vegetation across widely ranging spatial and temporal scales. Present-day recharge tends to be narrowly focused in time and space. Widespread water-table declines accompanied agricultural development during the twentieth century, demonstrating that sustainable ground-water supplies are not guaranteed when part of the extracted resource represents paleorecharge. Climatic controls on ground-water recharge range from seasonal cycles of summer monsoonal and winter frontal storms to multimillennial cycles of glacial and interglacial periods. Precipitation patterns reflect global-scale interactions among the oceans, atmosphere, and continents. Large-scale climatic influences associated with El Niño and Pacific Decadal Oscillations strongly, but irregularly, control weather in the study area, so that year-to-year variations in precipitation and ground-water recharge are large and difficult to predict. Proxy data indicate geologically recent periods of naturally occurring multidecadal droughts unlike any in the modern instrumental record. Any anthropogenically induced climate change will likely reduce ground-water recharge through diminished snowpack at higher elevations. Future changes in El Niño and monsoonal patterns, both crucial to precipitation in the study area, are highly uncertain in current models. Current land-use modifications influence ground-water recharge through vegetation, irrigation, and impermeable area. High mountain ranges bounding the study area—the San Bernadino Mountains and Sierra Nevada to the west, and the Wasatch and southern Colorado Rocky Mountains to the east—provide external geologic controls on ground-water recharge. Internal geologic controls stem from tectonic processes that led to numerous, variably connected alluvial-filled basins, exposure of extensive Paleozoic aquifers in mountainous recharge areas, and distinct modes of recharge in the Colorado Plateau and Basin and Range subregions. The chapters in this professional paper present (first) an overview of climatic and hydrogeologic framework (chapter A), followed by a regional analysis of ground-water recharge across the entire study area (chapter B). These are followed by an overview of site-specific case studies representing different subareas of the geographically diverse arid and semiarid southwestern United States (chapter C); the case studies themselves follow in chapters D–K. The regional analysis includes detailed hydrologic modeling within the framework of a high-resolution geographic-information system (GIS). Results from the regional analysis are used to explore both the distribution of ground-water recharge for mean climatic conditions as well as the influence of two climatic patterns—the El Niño-Southern Oscillation and Pacific Decadal Oscillation—that impart a high degree of variability to the hydrologic cycle. Individual case studies employ a variety of geophysical and geochemical techniques to investigate recharge processes and relate the processes to local geologic and climatic conditions. All of the case studies made use of naturally occurring tracers to quantify recharge. Thermal and geophysical techniques that were developed in the course of the studies are presented in appendices. The quantification of ground-water recharge in arid settings is inherently difficult due to the generally low amount of recharge, its spatially and temporally spotty nature, and the absence of techniques for directly measuring fluxes entering the saturated zone from the unsaturated zone. Deep water tables in arid alluvial basins correspond to thick unsaturated zones that produce up to millennial time lags between changes in hydrologic conditions at the land surface and subsequent changes in recharge to underlying ground water. Recent advances in physical, chemical, isotopic, and modeling techniques have fostered new types of recharge assessments. Chemical and isotopic techniques include an increasing variety of environmental tracers that are useful and robust. Physically based techniques include the use of heat as a tracer and computationally intensive geophysical imaging tools for characterizing hydrologic conditions in the unsaturated zone. Modeling-based techniques include spatially distributed water-budget computations using high-resolution remotely sensed and ground-based geographic data. Application of these techniques to arid and semiarid settings in the southwestern United States reveals distinct patterns of recharge corresponding to geologic setting, climatic and vegetative history, and land use. Analysis of recharge patterns shows that large expanses of alluvial basin floors are drying out under current climatic conditions, with little to no recharge to underlying ground water. Ground-water recharge occurs mainly beneath upland catchments in which thin soils overlie permeable bedrock, ephemeral channels in which flow may average only several hours per year, and active agricultural areas. The chapters in this professional paper represent a coordinated attempt to develop a better understanding of one of the Nation's most critical yet difficult-to-quantify renewable resources.

Professional Paper↗

USGS2003

Photodegradation of roxarsone in poultry litter leachates

Arsenic compounds have been used extensively in agriculture in the US for applications ranging from cotton herbicides to animal feed supplements. Roxarsone (3-nitro-4-hydroxyphenylarsonic acid), in particular, is used widely in poultry production to control coccidial intestinal parasites. It is excreted unchanged in the manure and introduced into the environment when litter is applied to farmland as fertilizer. Although the toxicity of roxarsone is less than that of inorganic arsenic, roxarsone can degrade, biotically and abiotically, to produce more toxic inorganic forms of arsenic, such as arsenite and arsenate. Experiments were conducted on aqueous litter leachates to test the stability of roxarsone under different conditions. Laboratory experiments have shown that arsenite can be cleaved photolytically from the roxarsone moiety at pH 4-8 and that the degradation rate increases with increasing pH. Furthermore, the rate of photodegradation increases with nitrate and natural organic matter concentration, reactants that are commonly found in poultry-litter-water leachates. Additional photochemical reactions rapidly oxidize the cleaved arsenite to arsenate. The formation of arsenate is not entirely undesirable, because it is less mobile in soil systems and less toxic than arsenite. A possible mechanism for the degradation of roxarsone in poultry litter leachates is proposed. The results suggest that poultry litter storage and field application practices could affect the degradation of roxarsone and subsequent mobilization of inorganic arsenic species. ?? 2002 Elsevier Science B.V. All rights reserved.

Science of the Total Environment↗

USGS2003

Ground-water-quality assessment of shallow aquifers in the Front Range Urban Corridor, Colorado, 1954-98

Historical (1954-98) water-quality data for major ions, trace elements, major plant nutrients, and organic constituents collected in 3,870 sampling events at 2,138 shallow wells represent ground-water quality in shallow aquifers that underlie the Front Range Urban Corridor in Colorado. Nonparametric summary statistics and maps of concentrations across the study area indicate that ground water in the study area included fresh to saline water. Sulfate concentrations were elevated in the north and northeast parts of the study area, possibly due to Pierre Shale and Laramie Formation shale outcrops in those areas. Apart from isolated areas of known contamination, chloride concentrations were generally less than 100 milligrams per liter across the study area. Wells with elevated nitrate concentrations usually were located near rivers and streams downgradient from metropolitan areas. Elevated nitrate concentrations in wells that were not along the South Platte River were possibly from individual sewage disposal system usage or from fertilizer application to land. Spatial distribution for organic compounds for which more than 40 percent of the data were above the detection limit (atrazine, methyl-tert-butylether, and prometon) is not widespread across the study area, but this may reflect limitations of data availability. Summary statistics calculated or estimated by decade are influenced by the temporal variability of data across the study area. The median values of specific conductance, chloride, and nitrate from the 1970?s are less than values from the 1980?s and 1990?s, which, because most samples from the l970?s were collected in the western part of the study area, indicates that water quality in the western part of the study area is generally different than the rest of the study area. Chloride may be introduced to ground water from runoff of road deicers or chlorinated organics in transportation/transitional areas, where the median concentration is the greatest (85.0 milligrams per liter). Nitrate median concentrations are several times greater where the land is cultivated or used for agricultural business, which may reflect use of nitrogen fertilizers and the presence of animal feeding operations. Most inorganic and organic constituents exceeded drinking-water standards in only a small percentage of samples. Exceptions to this include sulfate; nitrate; trace elements aluminum, cadmium, iron, and manganese; and organic compounds 1,1-dichloroethylene, tetrachloroethylene, trichloroethylene, benzene, and dichloromethane.

Water-Resources Investigations Report↗

USGS2008

Detecting changes in riparian habitat conditions based on patterns of greenness change: A case study from the Upper San Pedro River Basin, USA

Healthy riparian ecosystems in arid and semi-arid regions exhibit shifting patterns of vegetation in response to periodic flooding. Their conditions also depend upon the amount of grazing and other human uses. Taking advantage of these system properties, we developed and tested an approach that utilizes historical Landsat data to track changes in the patterns of greenness (Normalized Difference Vegetation Index) within riparian zones. We tested the approach in the Upper San Pedro River of southeastern Arizona of the US, an unimpounded river system that flows north into the US from northern Mexico. We evaluated changes in the pattern of greenness in the San Pedro River National Conservation Area (SPRNCA), an area protected from grazing and development since 1988, and in a relatively unprotected area north of the SPRNCA (NA). The SPRNCA exhibited greater positive changes in greenness than did the NA. The SPRNCA also exhibited larger, more continuous patches of positive change than did the NA. These pattern differences may reflect greater pressures from grazing and urban sprawl in the NA than in the SPRNCA, as well as differences in floodplain width, depth to ground water, and base geology. The SPRNCA has greater amounts of ground and surface water available to support a riparian gallery forest than does the NA, and this may have influenced changes during the study period. Estimates of the direction of greenness change (positive or negative) from satellite imagery were similar to estimates derived from aerial photography , except in areas where changes were from one type of shrub community to another, and in areas with agriculture. Change estimates in these areas may be more difficult because of relatively low greenness values, and because of differences in soil moisture, sun-angle, and crop rotations among the dates of data collection. The potential for applying a satellite-based, greenness change approach to evaluate riparian ecosystem condition over broad geographic areas is also discussed.

Arizona↗

USGS2023

Mangrove habitat persistence and carbon vulnerability associated with increased nutrient loading and sea-level rise at Ding Darling National Wildlife Refuge (Sanibel Island, Florida, USA)

J.N. “Ding” Darling National Wildlife Refuge (DDNWR) is located on Sanibel Island along the southwestern coast of Florida, USA. Sanibel Island is heavily developed, but DDNWR provides protection for a large mangrove area that supports biodiversity and recreational opportunity. However, nitrogen (N) and phosphorus (P) eutrophication attributed to agriculture discharge along the Caloosahatchee River has affected the area’s aquatic habitat with algal blooms and may be causing untimely degradation of Sanibel’s mangrove forests. We launched a series of studies to understand how additional nutrient loading to the levels expected in the future might affect DDNWR’s mangrove resource. We experimentally fertilized selected mangrove forest areas with N fertilizer (+N; NH4) and P fertilizer (+P; P 2 O 5 ) for three years, and monitored soil surface elevation change, soil and pneumatophore CO 2 fluxes from respiration, mangrove tree sap flow from two species ( Avicennia germinans , Rhizophora mangle ), and individual tree and stand water use, from which we developed carbon (C) budgets for +N and +P vs. control simulations as applied to DDNWR’s 1112 ha mangrove area. Many of the measured response variables provided hints of subtle changes in response to +P rather than +N, which were compounded when scaled. From this, we found that additional P loading is expected to stimulate CO 2 uptake via net ecosystem exchange of C, likely pressing the system beyond metabolic capacity and leading to a projected 41% increase in lateral C export to the estuary. Additional lateral C export is concomitant to a reduction in vertical soil surface elevation with +P. Furthermore, an inability of DDNWR’s mangroves to bury additional P and a release of P-bound ions to lateral export may exacerbate estuarine eutrophication. We also modelled the effect of sea-level rise influences on DDNWR’s mangroves through 2100 using a soil cohort model (WARMER-Mangroves) and found that the mangroves may be resilient to current rates of sea-level rise into the future but may also be susceptible to moderate accelerations. Greater eutrophication could create additional vulnerabilities to mangrove submergence, especially to basin mangroves where P concentrations are high and already reducing soil surface elevations in some mangroves. Our results suggest that amelioration of current P concentrations and avoidance of additional P loading to Sanibel Island’s mangroves are management options to consider.

Florida↗

USGS2006

Effects of Streambank Fencing of Near-Stream Pasture Land on a Small Watershed in Lancaster County, Pennsylvania

This study indicated that a small buffer width along a stream in pasture land can have a positive influence on surface-water quality, benthic macroinvertebrates, and near-stream shallow ground-water quality. Overland runoff processes that move suspended sediment to the stream were controlled (or reduced) to some extent by the vegetative buffer established. Results indicated streambank fencing resulted in decreases in N-species, total-P, and suspended-sediment concentrations and yields at the outlet of the treatment basin relative to untreated sites; however, dissolved-P concentrations and yields increased. These results indicate that nutrient management, in conjunction with streambank fencing, is important in helping to control nutrient loadings to streams in this agricultural setting. An upstream site (T-2) in the treatment basin showed post-treatment reductions in suspended-sediment yields and increases in N and P yields. The different results for these treated sites indicates the effects of streambank fencing should be studied at as large a scale as possible because field-scale influences on water quality as drainage area decreases can mute the effects of fencing. Benthic-macroinvertebrate data indicated streambank fencing had a positive influence on benthic macroinvertebrates and their habitat. More improvement was detected at the outlet of the treatment basin than the upstream sites. Probably the most important biological metric, taxa richness, indicated a greater number of benthic-macroinvertebrate taxa at treated relative to control sites after fencing. Results indicated fencing improved shallow ground-water quality (for the well nest in a stream-gaining area), as noted by decreased concentrations of N species and fecal-streptococcus counts. This improvement only occurred at the well nest where the stream was gaining water from the shallow ground-water system.

Pennsylvania↗

USGS1987

Chemical characteristics of water in the surficial aquifer system, Broward County, Florida

Water quality data was collected in 1981 and 1982 during the drilling of test holes at 27 sites throughout Broward County, Florida. Determinations were made for the following physical properties and chemical constituents: pH, alkalinity, specific conductance, major ions, selected nutrients and dissolved iron, aluminum, and manganese. Determinations for the trace elements-arsenic, barium, cadmium, chromium, lead, zinc, selenium, and mercury-were made at 14 wells. Water in the surficial aquifer system between the coastal ridge and the conservation areas is potable and usually is a calcium bicarbonate type for the first 140 ft or more below land surface. Between depths of 140 and 230 ft, groundwater generally grades into a mixed-ion water type. In some areas, diluted seawater occurs beneath the mixed water zone. Dissolved iron concentrations between the coastal ridge and the conservation areas are variable but generally exceed 1,000 micrograms/L. Beneath the conservation areas and the western edge of Broward County, groundwater in the first 100 ft below land surface generally is either a calcium bicarbonate type or a mixed-ion type. At depths between 100 and 200 ft, diluted residual seawater occurs, except along the far western edge of the county. Residual seawater is least diluted in the north. Dissolved iron concentrations generally are between 300 and 1 ,000 micrograms/L but increase to the east of the conservation areas. Other findings of the investigation include: (1) groundwater in some areas west of the coastal ridge probably would be suitable for most domestic, agricultural, and industrial uses if it were treated for carbonate hardness; (2) groundwater in much of Broward County is chemically altered by natural softening and magnesium enrichment (natural softening increases to the west and is very pronounced beneath the far western edge of the county); and (3) there is evidence of mineralized water from the conservation areas mixing with groundwater east of the levees. (Lantz-PTT)

Water-Resources Investigations Report↗

USGS2004

A Simplified Method for Sampling and Analysis of High Volume Surface Water for Organic Contaminants Using XAD-2

A simple compressed-gas driven system for field processing and extracting water for subsequent analyses of hydrophobic organic compounds is presented. The pumping device is a pneumatically driven pump and filtration system that can easily clarify at 4L/min. The extraction device uses compressed gas to drive filtered water through two parallel XAD-2 resin columns, at about 200 mL/min. No batteries or inverters are required for water collection or processing. Solvent extractions were performed directly in the XAD-2 glass columns. Final extracts are cleaned-up on Florisil cartridges without fractionation and contaminants analyzed by GC-MS. Method detection limits (MDLs) and recoveries for dissolved organic contaminants, polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs) and pesticides are reported along with results of surface water analysis for the San Francisco Bay, CA.

Journal of Environmental Science and Health - Part↗

USGS2011

An assessment of stressor extent and biological condition in the North American mid-continent great rivers (USA)

We assessed the North American mid-continent great rivers (Upper Mississippi, Missouri, and Ohio). We estimated the extent of each river in most- (MDC) or least-disturbed condition (LDC) based on multiple biological response indicators: fish and macroinvertebrate, trophic state based on chlorophyll a, macrophyte cover, and exposure of fish-eating wildlife to toxic contaminants in fish tissue (Hg, total chlordane, total DDT, PCBs). We estimated the extent of stressors on each river including nutrients, suspended solids, sediment toxicity, invasive species, and land use (agriculture and impervious surface). All three rivers had a greater percent of their river length in MDC than in LDC based on fish assemblages. The Upper Mississippi River had the greatest percent of river length with eutrophic status. The Ohio River had the greatest percent of river length with fish with tissue contaminant levels toxic to wildlife. Overall, condition indices based on fish assemblages were more sensitive to stress than macroinvertebrate indices. Compared to the streams in its basin, more of the Upper Mississippi and Missouri Rivers were in MDC for nutrients than the Ohio River. Invasive species (Asian carp and Dreissenid mussels) were less widespread and less abundant on the Missouri River than on the other great rivers. The Ohio River had the most urbanized floodplains (greatest percent impervious surface). The Missouri River had the most floodplain agriculture. The effect of large urban areas on river condition was apparent for several indicators. Ecosystem condition based in fish assemblages, trophic state, and fish tissue contamination was related to land use on the floodplain and at the subcatchment scale. This is the first unbiased bioassessment of the mid-continent great rivers in the United States. The indicators, condition thresholds, results, and recommendations from this program are a starting point for improved future great river assessments.

River Systems↗

USGS2021

Forecasting ecological responses for wetland restoration planning in Florida's Everglades

The Everglades wetland was once a river of grass, with water flowing slowly through the sawgrass, southward across the landscape. As developers took hold of south Florida, water was sent away from the heart of the Everglades through canals and levees to protect the former wetland for residential and agricultural development. In the 1990s, planning began to restore the Everglades in what is the largest hydrologic restoration undertaking in the world. With billions of taxpayer dollars at stake, restoration planners benefit from forecasting tools to inform restoration planning. To meet this need, scientists developed predictive ecological models and other decision support tools tailored to this dynamic ecosystem as well as to the needs of restoration planning teams. Predictive modeling has been able to take advantage of well-understood relationships between species of interest and hydrologic dynamics in the Everglades. Recent modeling advances include multi-species approaches that consider interactions among species as well as explicit consideration of trade-offs among species from potential water management actions. Scientists are also starting to look at ecosystem-wide vulnerabilities with explicit consideration of future change such as sea level rise. Modeling tools and approaches continue to be refined to meet decision making needs for Everglades restoration. However, more work is needed to consider additional complexities of this dynamic wetland as well as to consider the broader socio-environmental system.

Florida↗

USGS2013

Adjustment of the San Francisco estuary and watershed to decreasing sediment supply in the 20th century

The general progression of human land use is an initial disturbance (e.g., deforestation, mining, agricultural expansion, overgrazing, and urbanization) that creates a sediment pulse to an estuary followed by dams that reduce sediment supply. We present a conceptual model of the effects of increasing followed by decreasing sediment supply that includes four sequential regimes, which propagate downstream: a stationary natural regime, transient increasing sediment supply, transient decreasing sediment supply, and a stationary altered regime. The model features characteristic lines that separate the four regimes. Previous studies of the San Francisco Estuary and watershed are synthesized in the context of this conceptual model. Hydraulic mining for gold in the watershed increased sediment supply to the estuary in the late 1800s. Adjustment to decreasing sediment supply began in the watershed and upper estuary around 1900 and in the lower estuary in the 1950s. Large freshwater flow in the late 1990s caused a step adjustment throughout the estuary and watershed. It is likely that the estuary and watershed are still capable of adjusting but further adjustment will be as steps that occur only during greater floods than previously experienced during the adjustment period. Humans are actively managing the system to try to prevent greater floods. If this hypothesis of step changes occurring for larger flows is true, then the return interval of step changes will increase or, if humans successfully control floods in perpetuity, there will be no more step changes.

California↗

USGS2025

Greater white-fronted goose habitat use in Louisiana provides water depth management insights

Numerous waterfowl species have altered their geographic distribution in recent decades. The greater white-fronted goose ( Anser albifrons ) has shifted its wintering distribution from coastal marshes in Texas and Louisiana, USA, to interior landscapes, creating challenges for conservation managers. Although the range shift has been primarily attributed to landscape-scale changes in rice production, effects of fine-scale habitat conditions on greater white-fronted goose habitat use are unknown. Thus, information on fine-scale environmental conditions could provide information to managers working to mitigate effects of the shift. We used global positioning system neck collars to monitor 78 greater white-fronted geese in Louisiana each winter during 2016–2019 and visited all used locations to record vegetation height, water depth, and land cover. We modeled greater white-fronted goose habitat use in 4 regions across Louisiana (central, coastal, north, southwest), and evaluated effects of vegetation height, water depth, land cover, and interactions. In our candidate model set, we included a sampling null, which accounted for differences in sampling frequencies among hunt seasons and diel periods. The top model in the central, coastal, and north regions included water depth, whereas the top model in the southwest region included water depth, vegetation height, and land cover. Parameter estimates and confidence intervals indicated that goose habitat use was higher at sites with >5.1 cm of water compared to dry sites or sites with <5.1 cm of water. In the southwest region, goose habitat use was highest in areas identified as other land cover (e.g., corn, cotton, rye, sugarcane) and lowest in open water. Although Louisiana has substantial anthropogenic food resources in the form of rice agriculture and abundant grazing opportunities afforded by mild winters, our results indicate that wet areas provide better habitat to greater white-fronted geese than dry areas. New agricultural flooding regimes in Louisiana could improve habitat quality and potentially mitigate some effects of the winter distribution shift.

Louisiana↗

USGS2010

Nitrous oxide emission from denitrification in stream and river networks

Nitrous oxide (N 2 O) is a potent greenhouse gas that contributes to climate change and stratospheric ozone destruction. Anthropogenic nitrogen (N) loading to river networks is a potentially important source of N 2 O via microbial denitrification that converts N to N 2 O and dinitrogen (N 2 ). The fraction of denitrified N that escapes as N 2 O rather than N 2 (i.e., the N 2 O yield) is an important determinant of how much N 2 O is produced by river networks, but little is known about the N 2 O yield in flowing waters. Here, we present the results of whole-stream 15 N-tracer additions conducted in 72 headwater streams draining multiple land-use types across the United States. We found that stream denitrification produces N 2 O at rates that increase with stream water nitrate (NO 3 − ) concentrations, but that <1% of denitrified N is converted to N 2 O. Unlike some previous studies, we found no relationship between the N 2 O yield and stream water NO 3 − . We suggest that increased stream NO 3 − loading stimulates denitrification and concomitant N 2 O production, but does not increase the N 2 O yield. In our study, most streams were sources of N 2 O to the atmosphere and the highest emission rates were observed in streams draining urban basins. Using a global river network model, we estimate that microbial N transformations (e.g., denitrification and nitrification) convert at least 0.68 Tg·y −1 of anthropogenic N inputs to N 2 O in river networks, equivalent to 10% of the global anthropogenic N 2 O emission rate. This estimate of stream and river N 2 O emissions is three times greater than estimated by the Intergovernmental Panel on Climate Change. Humans have more than doubled the availability of fixed nitrogen (N) in the biosphere, particularly through the production of N fertilizers and the cultivation of N-fixing crops ( 1 ). Increasing N availability is producing unintended environmental consequences including enhanced emissions of nitrous oxide (N 2 O), a potent greenhouse gas ( 2 ) and an important cause of stratospheric ozone destruction ( 3 ). The Intergovernmental Panel on Climate Change (IPCC) estimates that the microbial conversion of agriculturally derived N to N 2 O in soils and aquatic ecosystems is the largest source of anthropogenic N 2 O to the atmosphere ( 2 ). The production of N 2 O in agricultural soils has been the focus of intense investigation (i.e., >1,000 published studies) and is a relatively well constrained component of the N 2 O budget ( 4 ). However, emissions of anthropogenic N 2 O from streams, rivers, and estuaries have received much less attention and remain a major source of uncertainty in the global anthropogenic N 2 O budget. Microbial denitrification is a large source of N 2 O emissions in terrestrial and aquatic ecosystems. Most microbial denitrification is a form of anaerobic respiration in which nitrate (NO 3 − , the dominant form of inorganic N) is converted to dinitrogen (N 2 ) and N 2 O gases ( 5 ). The proportion of denitrified NO 3 − that is converted to N 2 O rather than N 2 (hereafter referred to as the N 2 O yield and expressed as the mole ratio) partially controls how much N 2 O is produced via denitrification ( 6 ), but few studies provide information on the N 2 O yield in streams and rivers because of the difficulty of measuring N 2 and N 2 O production in these systems. Here we report rates of N 2 and N 2 O production via denitrification measured using whole-stream 15 NO 3 − -tracer experiments in 72 headwater streams draining different land-use types across the United States. This project, known as the second Lotic Intersite Nitrogen eXperiment (LINX II), provides unique whole-system measurements of the N 2 O yield in streams. Although N 2 O emission rates have been reported for streams and rivers ( 7 , 8 ), the N 2 O yield has been studied mostly in lentic freshwater and marine ecosystems, where it generally ranges between 0.1 and 1.0%, although yields as high as 6% have been observed ( 9 ). These N 2 O yields are low compared with observations in soils (0–100%) ( 10 ), which may be a result of the relatively lower oxygen (O 2 ) availability in the sediments of lakes and estuaries. However, dissolved O 2 in headwater streams is commonly near atmospheric equilibrium and benthic algal biofilms can produce O 2 at the sediment–water interface, resulting in strong redox gradients more akin to those in partially wetted soils. Thus, streams may have variable and often high N 2 O yields, similar to those in soils ( 11 ). The N 2 O yield in headwater streams is of particular interest because much of the NO 3 − input to rivers is derived from groundwater upwelling into headwater streams. Furthermore, headwater streams compose the majority of stream length within a drainage network and have high ratios of bioreactive benthic surface area to water volume ( 12 ).

Proceedings of the National Academy of Sciences of↗

USGS2008

Simulation of Ground-Water Flow and Effects of Ground-Water Irrigation on Base Flow in the Elkhorn and Loup River Basins, Nebraska

Irrigated agriculture is vital to the livelihood of communities in the Elkhorn and Loup River Basins in Nebraska, and ground water is used to irrigate most of the cropland. Concerns about the sustainability of ground-water and surface-water resources have prompted State and regional agencies to evaluate the cumulative effects of ground-water irrigation in this area. To facilitate understanding of the effects of ground-water irrigation, a numerical computer model was developed to simulate ground-water flow and assess the effects of ground-water irrigation (including ground-water withdrawals, hereinafter referred to as pumpage, and enhanced recharge) on stream base flow. The study area covers approximately 30,800 square miles, and includes the Elkhorn River Basin upstream from Norfolk, Nebraska, and the Loup River Basin upstream from Columbus, Nebraska. The water-table aquifer consists of Quaternary-age sands and gravels and Tertiary-age silts, sands, and gravels. The simulation was constructed using one layer with 2-mile by 2-mile cell size. Simulations were constructed to represent the ground-water system before 1940 and from 1940 through 2005, and to simulate hypothetical conditions from 2006 through 2045 or 2055. The first simulation represents steady-state conditions of the system before anthropogenic effects, and then simulates the effects of early surface-water development activities and recharge of water leaking from canals during 1895 to 1940. The first simulation ends at 1940 because before that time, very little pumpage for irrigation occurred, but after that time it became increasingly commonplace. The pre-1940 simulation was calibrated against measured water levels and estimated long-term base flow, and the 1940 through 2005 simulation was calibrated against measured water-level changes and estimated long-term base flow. The calibrated 1940 through 2005 simulation was used as the basis for analyzing hypothetical scenarios to evaluate the effects of ground-water irrigation on stream base flow for 1940 through 2005 and for 2006 through 2045. Simulated base flows were compared for scenarios that alternately did or did not include a representation of the effects of ground-water irrigation. The difference between simulated base flows for the two scenarios represents the predicted effects of ground-water irrigation on base flow. Comparison of base flows between simulations with ground-water irrigation and no ground-water irrigation indicated that ground-water irrigation has cumulatively reduced streamflows from 1940 through 2005 by 888,000 acre-feet in the Elkhorn River Basin and by 2,273,000 acre-feet in the Loup River Basin. Generally, predicted cumulative effects of ground-water irrigation on base flow were 5 to 10 times larger from 2006 through 2045 than from 1940 through 2005, and were 7,678,000 acre-feet for the Elkhorn River Basin and 14,784,000 acre-feet for the Loup River Basin. The calibrated simulation also was used to estimate base-flow depletion as a percentage of pumping volumes for a 50-year future time period, because base-flow depletion percentages are used to guide the placement of management boundaries in Nebraska. Mapped results of the base-flow depletion analysis conducted for most of the interior of the study area indicated that pumpage of one additional theoretical well simulated for a future 50-year period generally would result in more than 80 percent depletion when it was located close to the stream, except in areas where depletion was partly offset by reduced ground-water discharge to evapotranspiration in wetland areas. In many areas, depletion for the 50-year future period composed greater than 10 percent of the pumped water volume for theoretical wells placed less than 7 or 8 miles from the stream, though considerable variations existed because of the heterogeneity of the natural system represented in the simulation. For a few streams, predicted future simulated base flows dec

Scientific Investigations Report↗

USGS2019

Simulating land cover change impacts on groundwater recharge under selected climate projections, Maui, Hawaiʻi

This project developed an integrated land cover/hydrological modeling framework using remote sensing and geographic information systems (GIS) data, stakeholder input, climate information and projections, and empirical data to estimate future groundwater recharge on the Island of Maui, Hawaiʻi, USA. End-of-century mean annual groundwater recharge was estimated under four future land cover scenarios: Future 1 (conservation-focused), Future 2 (status-quo), Future 3 (development-focused), and Future 4 (balanced conservation and development), and two downscaled climate projections: a coupled model intercomparison project (CMIP) phase 5 (CMIP5) representative concentration pathway (RCP) 8.5 “dry climate” future and a CMIP3 A1B “wet climate” future. Results were compared to recharge estimated using the 2017 baseline land cover to understand how changing land management and climate could influence groundwater recharge. Estimated recharge increased island-wide under all future land cover and climate combinations and was dominated by specific land cover transitions. For the dry future climate, recharge for land cover Futures 1 to 4 increased by 12%, 0.7%, 0.01%, and 11% relative to 2017 land cover conditions, respectively. Corresponding increases under the wet future climate were 10%, 0.9%, 0.6%, and 9.3%. Conversion from fallow/grassland to diversified agriculture increased irrigation, and therefore recharge. Above the cloud zone (610 m), conversion from grassland to native or alien forest led to increased fog interception, which increased recharge. The greatest changes to recharge occurred in Futures 1 and 4 in areas where irrigation increased, and where forest expanded within the cloud zone. Furthermore, new future urban expansion is currently slated for coastal areas that are already water-stressed and had low recharge projections. This study demonstrated that a spatially-explicit scenario planning process and modeling framework can communicate the possible consequences and tradeoffs of land cover change under a changing climate, and the outputs from this study serve as relevant tools for landscape-level management and interventions.

Hawaii↗

USGS2001

Hydrogeology, model description, and flow analysis of the Mississippi River alluvial aquifer in northwestern Mississippi

The Mississippi River alluvial aquifer underlies a 7,000-square-mile area of the Mississippi River alluvial plain in northwestern Mississippi, an area locally known as the Delta. The alluvial aquifer is the most heavily pumped aquifer in Mississippi, and wells yielding more than 2,000 gallons per minute are common. About 98 percent of the pumpage from the alluvial aquifer is for agriculture. The sand and gravel that form the alluvial aquifer averages about 110 feet in thickness. The aquifer is confined over most of the Delta, and the upper confining unit averages about 25 feet in thickness. The average depth to water in the alluvial aquifer during fall 1999 was about 25 feet. The alluvial aquifer receives lateral recharge at the western boundary from the Mississippi River and at the eastern boundary from aquifers that directly underlie the Bluff Hills. The alluvial aquifer receives water vertically from precipitation, internal streams and lakes, and locally from the Cockfield and Sparta aquifers where they directly underlie the alluvial aquifer. The alluvial aquifer also discharges water to the underlying aquifers, and during extended periods with no surface runoff, to the Mississippi River and to the internal streams and lakes. The magnitude of recharge from the Mississippi River, precipitation, and internal lakes and streams can vary greatly depending upon hydrologic and climatic conditions. The U.S. Geological Survey modular threedimensional finite-difference ground-water flow model, MODFLOW, was used to simulate the Mississippi River alluvial aquifer flow system in northwestern Mississippi. The model uses one layer with a rectangular-grid and 1-mile square cells to represent the alluvial aquifer. The model was calibrated and verified by using spring and fall water-level measurements from January 1988 through December 1996. The values of selected model calibration-derived parameters for the alluvial aquifer are hydraulic conductivity, 425 feet per day; specific yield, 0.32; and storage coefficient, 0.016. The model showed that the aquifer lost water from storage at an average rate of 404 cubic feet per second during the 9-year simulation period. During this period, the average pumpage rate was 1,270 million gallons per day (1,980 cubic feet per second). Simulated areal recharge from precipitation averaged 2.6 inches per year (1,360 cubic feet per second). Vertical recharge from the internal streams and lakes and lateral recharge from aquifers underlying the Bluff Hills averaged 113 and 108 cubic feet per second, respectively. Model results indicated that net recharge from the Mississippi River and from aquifers directly underlying the alluvial aquifer was small.

Mississippi↗

USGS2016

Effects of aquifer storage and recovery activities on water quality in the Little Arkansas River and Equus Beds Aquifer, south-central Kansas, 2011–14

The Equus Beds aquifer in south-central Kansas is aprimary water source for the city of Wichita. The Equus Beds aquifer storage and recovery (ASR) project was developed to help the city of Wichita meet increasing current (2016) and future water demands. The Equus Beds ASR project pumps water out of the Little Arkansas River during above-base flow conditions, treats it using drinking-water quality standards as a guideline, and recharges it into the Equus Beds aquifer for later use. Phase II of the Equus Beds ASR project currently (2016) includes a river intake facility and a surface-water treatment facility with a 30 million gallon per day capacity. Water diverted from the Little Arkansas River is delivered to an adjacent presedimentation basin for solids removal. Subsequently, waste from the surface-water treatment facility and the presedimentation basin is returned to the Little Arkansas River through a residuals return line. The U.S. Geological Survey, in cooperation with the city of Wichita, developed and implemented a hydrobiological monitoring program as part of the ASR project to characterize and quantify the effects of aquifer storage and recovery activities on the Little Arkansas River and Equus Beds aquifer water quality. Data were collected from 2 surface-water sites (one upstream and one downstream from the residuals return line), 1 residuals return line site, and 2 groundwater well sites (each having a shallow and deep part): the Little Arkansas River upstream from the ASR facility near Sedgwick, Kansas (upstream surface-water site 375350097262800), about 0.03 mile (mi) upstream from the residuals return line site; the Little Arkansas River near Sedgwick, Kans. (downstream surface-water site 07144100), about 1.68 mi downstream from the residuals return line site; discharge from the Little Arkansas River ASR facility near Sedgwick, Kansas (residuals return line site 375348097262800); 25S 01 W 07BCCC01 SMW–S11 near CW36 (MW–7 shallow groundwater well site 375327097285401); 25S01 W 07BCCC02 DMW–S10 near CW36 (MW–7 deep groundwater well site 375327097285402); 25S 01W 07BCCA01 SMW–S13 near CW36 (MW–8 shallow groundwater well site 375332097284801); and 25S 01W 07BCCA02 DMW–S14 near CW36 (MW–8 deep groundwater well site 375332097284802). The U.S. Geological Survey, in cooperation with the city of Wichita, assessed the effects of the ASR Phase II facility residuals return line discharges on stream quality of the Little Arkansas River by measuring continuous physicochemical properties and collecting discrete water-quality and sediment samples for about 2 years pre- (January 2011 through April 2013) and post-ASR (May 2013 through December 2014) Phase II facility operation upstream and downstream from the ASR Phase II facility. Additionally, habitat variables were quantified and macroinvertebrate and fish communities were sampled upstream and downstream from the ASR Phase II facility during the study period. To assess the effects of aquifer recharge on Equus Beds groundwater quality, continuous physicochemical properties were measured and discrete water-quality samples were collected before and during the onset of Phase II aquifer recharge in two (shallow and deep) groundwater wells. Little Arkansas River streamflow was about 10 times larger after the facility began operating because of greater rainfall. Residuals return line release volumes were a very minimal proportion (0.06 percent) of downstream streamflow volume during the months the ASR facility was operating. Upstream and downstream continuously measured water temperature and dissolved oxygen median differences were smaller post-ASR than pre-ASR. Turbidity generally was smaller at the downstream site throughout the study period and decreased at both sites after the ASR Phase II facility began discharging despite a median residuals return line turbidity that was about an order of magnitude larger than the median turbidity at the downstream site. Upstream and downstream continuously measured turbidity median differences were larger post-ASR than pre-ASR. Median post-ASR continuously measured nitrite plus nitrate and continuously computed total suspended solids and suspended-sediment concentrations were smaller than pre-ASR likely because of higher streamflows and dilution; whereas, median continuously computed dissolved and total organic carbon concentrations were larger likely because of higher streamflows and runoff conditions. None of the discretely measured water-quality constituents (dissolved and suspended solids, primary ions, suspended sediment, nutrients, carbon, trace elements, viral and bacterial indicators, and pesticides) in surface water were significantly different between the upstream and downstream sites after the ASR Phase II facility began discharging; however, pre-ASR calcium, sodium, hardness, manganese, and arsenate concentrations were significantly larger at the upstream site, which indicates that some water-quality conditions at the upstream and downstream sites were more similar post-ASR. Most of the primary constituents that make up dissolved solids decreased at both sites after the ASR Phase II facility began operation. Discretely collected total suspended solids concentrations were similar between the upstream and downstream sites before the facility began operating but were about 27 percent smaller at the downstream site after the facility began operating, despite the total suspended solids concentrations in the residuals return line being 15 times larger than the downstream site. Overall habitat scores were indicative of suboptimal conditions upstream and downstream from the ASR Phase II facility throughout the study period. Substrate fouling and sediment deposition mean scores indicated marginal conditions at the upstream and downstream sites during the study period, demonstrating that sediment deposition was evident pre- and post-ASR and no substantial changes in these habitat characteristics were noted after the ASR Phase II facility began discharging. Macroinvertebrate community composition (evaluated using functional feeding, behavioral, and tolerance metrics) generally was similar between sites during the study period. Fewer macroinvertebrate metrics were significant between the upstream and downstream sites post-ASR (6) than pre-ASR (14), which suggests that macroinvertebate communities were more similar after the ASR facility began discharging. Upstream-downstream comparisons in macroinvertebrate aquatic-life-support metrics had no significant differences for the post-ASR time period and neither site was fully supporting for any of the Kansas Department of Health and Environment aquatic-life-support metrics (Macroinvertebrate Biotic Index; Kansas Biotic Index with tolerances for nutrients and oxygen-demanding substances; Ephemeroptera, Plecoptera, and Trichoptera [EPT] richness; and percentage of EPT species). Overall, using macroinvertebrate aquatic life-support criteria from the Kansas Department of Health and Environment, upstream and downstream sites were classified as partially supporting before and after the onset of ASR facility operations. Fish community trophic status and tolerance groups generally were similar among sites during the study period. Fish community Little Arkansas River Basin Index of Biotic Integrity scores at the upstream and downstream sites were indicative of fair-to-good conditions before the facility began operating and decreased to fair conditions after the facility began operating. Groundwater physicochemical changes concurrent with the beginning of recharge operations at the Sedgwick basin were more pronounced in shallow groundwater. No constituent concentrations in the pre-recharge period in comparison to the post-recharge period increased to concentrations exceeding drinking water regulations; however, nitrate decreased significantly from a pre-recharge exceedance of the U.S. Environmental Protection Agency maximum contaminant level to a post recharge nonexceedance. Shallow groundwater chemical concentrations or rates of detection increased after artificial recharge began for the ions potassium, chloride, and fluoride; phosphorus and organic carbon species; trace elements barium, manganese, nickel, arsenate, arsenic, and boron; agricultural pesticides atrazine, metolachlor, metribuzin, and simazine; organic disinfection byproducts bromodichloromethane and trichloromethane; and gross beta levels. Additionally, water temperature, and pH were larger after recharge began; and total solids and slime-forming bacteria concentrations and densities were smaller. Total solids, nitrate, and selenium significantly decreased; and potassium, chloride, nickel, arsenic, fluoride, phosphorus and carbon species, and gross beta levels significantly increased in shallow groundwater after artificial recharge. Results of biological activity reaction tests indicated that water quality microbiology was different before and after artificial recharge began; at times, these differences may lead to changes in dominant bacterial populations that, in turn, may lead to formation and expansion in populations that may cause bioplugging and other unwanted effects. Calcite, iron (II) hydroxide, hydroxyapatite, and similar minerals, had shifts in saturation indices that generally were from undersaturation toward equilibrium and, in some cases, toward oversaturation. These shifts toward neutral saturation indices might suggest reduced weathering of the minerals present in the Equus Beds aquifer. Chemical weathering in the shallow parts of the aquifer may be accelerated because of the increased water temperatures and the system is more vulnerable to clogged pores and mineral dissolution as the equilibrium state is affected by recharge and withdrawal. When oversaturation is indicated for iron minerals, plugging of aquifer materials may happen.

Kansas↗