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Tritium as an indicator of modern, mixed, and premodern groundwater age

Categorical classification of groundwater age is often used for the assessment and understanding of groundwater resources. This report presents a tritium-based age classification system for the conterminous United States based on tritium ( 3 H) thresholds that vary in space and time: modern (recharged in 1953 or later), if the measured value is larger than an upper threshold; premodern (recharged prior to 1953) if the measured value is smaller than a lower threshold; or mixed if the measured value is between the two thresholds. Inclusion of spatially varying thresholds, rather than a single threshold, accounts for the observed systematic variation in 3 H deposition across the United States. Inclusion of time-varying thresholds, rather than a single threshold, accounts for the date of sampling given the radioactive decay of 3 H. The efficacy of the tritium-based age classification system was evaluated at national and regional scales. The system was evaluated at a national scale by classifying samples from 1,788 public-supply wells distributed across 19 principal aquifers and comparing those results with expectations based on hydrogeologic principles. The regional-scale data are from five paired networks of shallow and deep wells (287 wells). As expected, modern groundwater is more prevalent in shallow wells than in deeper wells, in fractured-rock and carbonate aquifers as compared to clastic aquifers, in unconfined areas as compared to confined areas, and in humid climates as compared to arid climates. The results from a tritium-based age classification system compared favorably with the results of 14 previous studies of groundwater ages that used different age tracers and analytical methods. The wells and samples from the Cambrian-Ordovician aquifer that had been analyzed using a more complex multi-tracer analysis were also analyzed using the tritium-based age classification system, and there was a close match between the two methods. The results from these various studies suggest that the tritium-based age classification system may be informative as a screening tool prior to selecting more expensive and complex age-dating tracers and methods, or to provide an explanatory variable for other water-quality data where more complex methods or tracers are not available. This work improves on previous groundwater age classification using 3 H by developing methods that (1) determine 3 H thresholds for groundwater recharged in 1953 or later that minimize the misclassification of modern samples as mixed; (2) determine a pre-1953 threshold to estimate premodern background concentrations; and (3) add a mixed category to classify samples that are clearly neither entirely modern nor entirely premodern. As with any tritium-based approach, it can fail when the 3 H record in precipitation does not accurately reflect the record of 3 H in recharge

Conterminous United States↗

Using microbial source tracking to identify contamination sources in Port Jefferson Harbor, Setauket Harbor, and Conscience Bay on Long Island, New York

The U.S. Geological Survey worked in cooperation with the New York State Department of Environmental Conservation to assess the potential sources of fecal contamination entering Port Jefferson Harbor, Setauket Harbor, and Conscience Bay, an embayment complex on the northern shore of Suffolk County, Long Island, New York. Water samples are routinely collected by the New York State Department of Environmental Conservation in the harbor and analyzed for fecal coliform bacteria, an indicator of fecal contamination, to determine the need for closure of shellfish beds for harvest and consumption. Fecal coliform and other bacteria are an indicator of the potential presence of pathogenic (disease-causing) bacteria. However, indicator bacteria alone cannot determine the biological or geographical sources of contamination; therefore, microbial source tracking was implemented to determine various biological sources of contamination. In addition, information such as the location, weather and season, and surrounding land use where a sample was collected help determine the geographical source and conveyance of land-based water to the embayment. Our analysis revealed that the most substantial source of fecal contamination to the Port Jefferson Harbor complex was discharge from sites draining ponds and wetlands, particularly during the summer months. Fecal coliform bacteria at sites where ponds and wetlands drain are increased by stormwater runoff, which is another substantial source of fecal contamination. Human markers, likely originating from the outfall of the Port Jefferson sewage treatment plant, were found at least once in every sample collected within Port Jefferson Harbor; however, fecal coliform concentrations were low, indicating that the sewage treatment plant is not a likely source of fecal contamination to the embayment. Canine markers detected in Conscience Bay were associated with high fecal coliform, particularly in wet summer samples. Waterfowl markers were most often detected in source water for Port Jefferson Harbor, but in Conscience Bay, waterfowl was frequently detected within the bay itself. Resuspension of bed sediment may contribute to fecal contamination in the harbor, but more targeted analyses are needed to support this finding. There was little evidence of groundwater-contributing fecal bacteria by direct discharge from the subsurface. A classification scheme was developed to convey the degree of fecal contamination to stakeholders and resource managers. Based on this classification scheme, the Culvert North of State Route 25A, Culvert North of Shore Road, Old Mill Creek Culvert, and Mill Pond Culvert to Conscience Bay sites were identified as locations that contribute substantial fecal contamination to the Port Jefferson Harbor complex.

New York↗

Evaluation of sensors for continuous monitoring of harmful algal blooms in the Finger Lakes region, New York, 2019 and 2020

In response to the increasing frequency of cyanobacterial harmful algal blooms (CyanoHABs) in the Finger Lakes region of New York State, a pilot study by the U.S. Geological Survey, in collaboration with the New York State Department of Environmental Conservation, was conducted to enhance CyanoHAB monitoring and understanding. High-frequency sensors were deployed on open water monitoring-station platforms at Seneca Lake in 2019–20, at Owasco Lake in 2019–20, and at Skaneateles Lake in 2019. One of the goals of this study was to evaluate the ability of in-place sensors to make representative measurements of dissolved organic matter, nutrients, and algal pigments (as indicators of phytoplankton biomass) while collecting routine field parameters (water temperature, specific conductance, pH, dissolved oxygen, turbidity, weather, and light) to provide additional information about environmental conditions. Despite challenges like power issues and sensor fouling, the sensors performed well overall. However, correlation analyses between sensor readings and laboratory measurements revealed variable performance. Results indicate the relation between the fluorescent dissolved organic matter sensor and laboratory-measured dissolved organic carbon was weak at all study lakes. The nitrate sensors can be sensitive to ambient temperature and have a substantial power requirement, and the relation between sensor- and laboratory-measured nitrate values differed among lakes. The orthophosphate sensors, which were complex and prone to data loss, yielded results that were difficult to interpret because orthophosphate detections are rare in the study lakes. The multichannel fluorometer was also complex to use and required several unique procedures for its operation. Chlorophyll measurements from the fluorometers correlated moderately well with laboratory-measured chlorophyll- a , although relations with total phytoplankton biovolume were weaker. Relations between phycocyanin concentration measurements from the dual-channel fluorometers and cyanobacterial biovolume were not significant; however, the cyanobacterial biovolume correlation was moderately strong with chlorophyll contribution from cyanobacteria measurements from the multichannel fluorometer. Of all collected parameters, water temperature was among the strongest correlated with chlorophyll- a , total phytoplankton biovolume, and cyanobacterial biovolume. Stepwise regression analysis was used to identify the best parameters for modeling variance in laboratory measures of phytoplankton biomass. This analysis included factors such as chlorophyll fluorescence, pH, water temperature, and others, which varied by lake. Overall, the models had limited explanatory power for chlorophyll- a and other biovolumes, possibly due to the absence of CyanoHABs at the open-water monitoring locations. Multivariate models did not outperform simple fluorescence-based models. Notably, turbidity was a more significant indicator of cyanobacterial biovolume variability than phycocyanin from dual-channel fluorometers. The study concludes that while single and multivariate models based on sensor data are useful, they did not explain any more variance than fluorescence-based models. Broader data collection, including more CyanoHAB events, is necessary to refine these models. Integrating machine learning could leverage large, complex datasets to improve CyanoHAB predictions, thereby enhancing the management and understanding of these blooms.

New York↗

A fluorimetric study of the thorium-morin system

Thorium reacts with morin to yield a yellow complex that fluoresces when irradiated with ultraviolet light. The effect on the fluorescence of such variable as concentration of acid, alcohol, thorium, morin, and complex; time, temperature, and wavelength of exciting light are studied to determine experimental conditions yielding maximum fluorescence. The effects of Zr 4+ , Al 3+ , Fe 3+ , Ca 2+ , and La 3+ are discussed. The fundamental relationships between light absorption and fluorescence are expressed in a general equation which applied to a three-component system when the fluorescence is measured in a transmission-type fluorimeter. This general equation is used to obtain an expression for the fluorescence of the thorium-morin system. Equations, derived from experimental data, related both the fraction of thorium reacted to form complex and the fraction of unquenched fluorescence to the concentration of uncombined morin. These functions, when combined with the general equation, give an expression which relates the total net fluorescence to the amount of uncombined morin in the solution. This last equation can be used to determine the one region for the concentration of uncombined morin that gives maximum sensitivity for the system. Calculated standard curves are in excellent agreement with experimental curves.

Trace Elements Investigations↗

Geochemistry of the Birch Creek Drainage Basin, Idaho

The U.S. Survey and Idaho State University, in cooperation with the U.S. Department of Energy, are conducting studies to describe the chemical character of ground water that moves as underflow from drainage basins into the eastern Snake River Plain aquifer (ESRPA) system at and near the Idaho National Engineering and Environmental Laboratory (INEEL) and the effects of these recharge waters on the geochemistry of the ESRPA system. Each of these recharge waters has a hydrochemical character related to geochemical processes, especially water-rock interactions, that occur during migration to the ESRPA. Results of these studies will benefit ongoing and planned geochemical modeling of the ESRPA at the INEEL by providing model input on the hydrochemical character of water from each drainage basin. During 2000, water samples were collected from five wells and one surface-water site in the Birch Creek drainage basin and analyzed for selected inorganic constituents, nutrients, dissolved organic carbon, tritium, measurements of gross alpha and beta radioactivity, and stable isotopes. Four duplicate samples also were collected for quality assurance. Results, which include analyses of samples previously collected from four other sites, in the basin, show that most water from the Birch Creek drainage basin has a calcium-magnesium bicarbonate character. The Birch Creek Valley can be divided roughly into three hydrologic areas. In the northern part, ground water is forced to the surface by a basalt barrier and the sampling sites were either surface water or shallow wells. Water chemistry in this area was characterized by simple evaporation models, simple calcite-carbon dioxide models, or complex models involving carbonate and silicate minerals. The central part of the valley is filled by sedimentary material and the sampling sites were wells that are deeper than those in the northern part. Water chemistry in this area was characterized by simple calcite-dolomite-carbon dioxide models. In the southern part, ground water enters the ESRPA. In this area, the sampling sites were wells with depths and water levels much deeper than those in the northern and central parts of the valley. The calcium and carbon water chemistry in this area was characterized by a simple calcite-carbon dioxide model, but complex calcite-silicate models more accurately accounted for mass transfer in these areas. Throughout the geochemical system, calcite precipitated if it was an active phase in the models. Carbon dioxide either precipitated (outgassed) or dissolved depending on the partial pressure of carbon dioxide in water from the modeled sites. Dolomite was an active phase only in models from the central part of the system. Generally the entire geochemical system could be modeled with either evaporative models, carbonate models, or carbonate-silicate models. In both of the latter types of models, a significant amount of calcite precipitated relative to the mass transfer to and from the other active phases. The amount of calcite precipitated in the more complex models was consistent with the amount of calcite precipitated in the simpler models. This consistency suggests that, although the simpler models can predict calcium and carbon concentrations in Birch Creek Valley ground and surface water, silicate-mineral-based models are required to account for the other constituents. The amount of mass transfer to and from the silicate mineral phases was generally small compared with that in the carbonate phases. It appears that the water chemistry of well USGS 126B represents the chemistry of water recharging the ESRPA by means of underflow from the Birch Creek Valley.

Idaho↗

Determination of dissolved aluminum in water samples

A technique has been modified for determination of a wide range of concentrations of dissolved aluminum (Al) in water and has been tested. In this technique, aluminum is complexed with 8-hydroxyquinoline at pH 8.3 to minimize interferences, then extracted with methyl isobutyl ketone (MIBK). The extract is analyzed colorimetrically at 395 nm. This technique is used to analyze two forms of monomeric Al, nonlabile (organic complexes) and labile (free, Al, Al sulfate, fluoride and hydroxide complexes). A detection limit 2 ug/L is possible with 25-ml samples and 10-ml extracts. The detection limit can be decreased by increasing the volume of the sample and (or) decreasing the volume of the methyl isobutyl ketone extract. The analytical uncertainty of this method is approximately + or - 5 percent. The standard addition technique provides a recovery test for this technique and ensures precision in samples of low Al concentrations. The average percentage recovery of the added Al plus the amount originally present was 99 percent. Data obtained from analyses of filtered standard solutions indicated that Al is adsorbed on various types of filters. However, the relationship between Al concentrations and adsorption remains linear. A test on standard solutions also indicated that Al is not adsorbed on nitric acid-washed polyethylene and polypropylene bottle wells. (USGS)

Water-Resources Investigations Report↗

Cenozoic stratigraphy and geologic history of the Tucson Basin, Pima County, Arizona

This report was prepared as part of a geohydrologic study of the Tucson basin conducted by the U.S. Geological Survey in cooperation with the city of Tucson. Geologic data from more than 500 water supply and test wells were analyzed to define characteristics of the basin sediments that may affect the potential for land subsidence induced by groundwater withdrawal. The Tucson basin is a structural depression within the Basin and Range physiographic province. The basin is 1,000 sq mi in units area and trends north to northwest. Three Cenozoic stratigraphic unit--the Pantano Formation of Oligocene age, the Tinaja beds (informal usage) of Miocene and Pliocene age, and the Fort Lowell Formation of Pleistocene age--fill the basin. The Tinaja beds include lower, middle, and upper unconformable units. A thin veneer of stream alluvium of late Quaternary age overlies the Fort Lowell Formation. The Pantano Formation and the lower Tinaja beds accumulated during a time of widespread continental sedimentation, volcanism, plutonism, uplift, and complex faulting and tilting of rock units that began during the Oligocene and continued until the middle Miocene. Overlying sediments of the middle and upper Tinaja beds were deposited in response to two subsequent episodes of post-12-million-year block faulting, the latter of which was accompanied by renewed uplift. The Fort Lowell Formation accumulated during the Quaternary development of modern through-flowing the maturation of the drainage. The composite Cenozoic stratigraphic section of the Tucson basin is at least 20,000 ft thick. The steeply tilted to flat-lying section is composed of indurated to unconsolidated clastic sediments, evaporites, and volcanic rocks that are lithologically and structurally complex. The lithology and structures of the section was greatly affected by the uplift and exhumation of adjacent metamorphic core-complex rocks. Similar Cenozoic geologic relations have been identified in other parts of southern Arizona. (Author 's abstract)

Water-Resources Investigations Report↗

Geohydrology and simulation of ground-water flow in the aquifer system near Calvert City, Kentucky

The U.S. Geological Survey, in cooperation with the Kentucky Natural Resources and Environmental Protection Cabinet, constructed a two-dimensional, steady-state ground-water-flow model to estimate hydraulic properties, contributing areas to discharge boundaries, and the average linear velocity at selected locations in an aquifer system near Calvert City, Ky. Nonlinear regression was used to estimate values of model parameters and the reliability of the parameter estimates. The regression minimizes the weighted difference between observed and calculated hydraulic heads and rates of flow. The calibrated model generally was better than alternative models considered, and although adding transmissive faults in the bedrock produced a slightly better model, fault transmissivity was not estimated reliably. The average transmissivity of the aquifer was 20,000 feet squared per day. Recharge to two outcrop areas, the McNairy Formation of Cretaceous age and the alluvium of Quaternary age, were 0.00269 feet per day (11.8 inches per year) and 0.000484 feet per day (2.1 inches per year), respectively. Contributing areas to wells at the Calvert City Water Company in 1992 did not include the Calvert City Industrial Complex. Since completing the fieldwork for this study in 1992, the Calvert City Water Company discontinued use of their wells and began withdrawing water from new wells that were located 4.5 miles east-southeast of the previous location; the contributing area moved farther from the industrial complex. The extent of the alluvium contributing water to wells was limited by the overlying lacustrine deposits. The average linear ground-water velocity at the industrial complex ranged from 0.90 feet per day to 4.47 feet per day with a mean of 1.98 feet per day.

Water-Resources Investigations Report↗

Geohydrology and numerical simulation of the ground-water flow system of Kona, Island of Hawaii

Prior to the early 1990's, ground-water in the Kona area, which is in the western part of the island of Hawaii, was withdrawn from wells located within about 3 mi from the coast where water levels were less than 10 feet above sea level. In 1990, exploratory drilling in the uplands east of the existing coastal wells first revealed the presence of high water levels (greater than 40 feet above sea level) in the Kona area. Measured water levels from 16 wells indicate that high water levels exist in a zone parallel to and inland of the Kona coast, between Kalaoa and Honaunau. Available hydrologic and geophysical evidence is generally consistent with the concept that the high ground-water levels are associated with a buried dike complex. A two-dimensional (areal), steady-state, freshwater-saltwater, sharp-interface ground-water flow model was developed for the Kona area of the island of Hawaii, to enhance the understanding of (1) the distribution of aquifer hydraulic properties, (2) the conceptual framework of the ground-water flow system, and (3) the regional effects of ground-water withdrawals on water levels and coastal discharge. The model uses the finite-difference code SHARP. To estimate the hydraulic characteristics, average recharge, withdrawals, and water-level conditions for the period 1991-93 were simulated. The following horizontal hydraulic-conductivity values were estimated: (1) 7,500 feet per day for the dike-free volcanic rocks of Hualalai and Mauna Loa, (2) 0.1 feet per day for the buried dike complex of Hualalai, (3) 10 feet per day for the northern marginal dike zone (north of Kalaoa), and (4) 0.5 feet per day for the southern marginal dike zone between Palani Junction and Holualoa. The coastal leakance was estimated to be 0.05 feet per day per foot. Measured water levels indicate that ground water generally flows from inland areas to the coast. Model results are in general agreement with the limited set of measured water levels in the Kona area. Model results indicate, however, that water levels do not strictly increase in an inland direction and that a ground-water divide exists within the buried dike complex. Data are not available, however, to verify model results in the area near and inland of the model-calculated ground-water divide. Three simulations to determine the effects of proposed withdrawals from the high water-level area on coastal discharge and water levels, relative to model-calculated, steady-state coastal discharge and water levels for 1997 withdrawal rates, show that the effects are widespread. During 1997, the total withdrawal of ground water from the high water-level area between Palani Junction and Holualoa was about 1 million gallons per day. Model results indicate that it may not be possible to withdraw 25.6 million gallons per day of freshwater from this area between Palani Junction and Holualoa, but that it may be possible to withdraw between 5 to 8 million gallons per day from the same area. For a proposed withdrawal rate of 5.0 million gallons per day uniformly distributed to 12 sites between Palani Junction and Holualoa, the model-calculated drawdown of 0.01 foot or more extends about 9 miles north-northwest and about 7 miles south of the proposed well sites. In all scenarios, freshwater coastal discharge is reduced by an amount equal to the additional freshwater withdrawal. Additional data needed to improve the understanding of the ground-water flow system in the Kona area include: (1) a wider spatial distribution and longer temporal distribution of water levels, (2) improved information about the subsurface geology, (3) independent estimates of hydraulic conductivity, (4) improved recharge estimates, and (5) information about the vertical distribution of salinity in ground water.

Hawaii↗

Site Selection for a Deep Monitor Well, Kualapuu, Molokai, Hawaii

Management of the ground-water resources near Kualapuu on the island of Molokai, Hawaii, is hindered by the uncertainty in the vertical salinity structure in the aquifer. In the State of Hawaii, vertical profiles of ground-water salinity are commonly obtained from deep monitor wells, and these profiles are used to estimate the thicknesses of the freshwater part of the ground-water flow system and the freshwater-saltwater transition zone. Information from a deep monitor well would improve the understanding of the ground-water flow system and the ability to effectively manage the ground-water resources near Kualapuu; however, as of mid-1999 no deep monitor wells had been drilled on the island of Molokai. Selection of an appropriate site for drilling a deep monitor well in the Kualapuu area depends partly on where future ground-water development may occur. Simulations using an areally two-dimensional, steady-state, sharp-interface ground-water flow model previously developed for the island of Molokai, Hawaii, indicate that the southeastern part of the Kualapuu area is a possible area of future ground-water development because (1) withdrawals from this area have a small effect on water levels at existing wells in the Kualapuu area (relative to effects from withdrawals in other parts of the Kualapuu area that are outside of the dike complex), and (2) model-calculated water levels in this part of the Kualapuu area are high relative to water levels in other parts of the Kualapuu area that are outside of the dike complex. Additional site-selection criteria include (1) ground-water level, (2) ground-surface altitude, (3) land classification, ownership, and accessibility, (4) geology, (5) locations of existing production wells, and (6) historical ground-water quality information. A deep monitor well in the Kualapuu area will likely be most useful for management purposes if it is located (1) in the vicinity of future ground-water development, (2) in an area where water levels are between about 8 and 12 feet above sea level, (3) at a ground-surface altitude that is between about 1,000 and 1,100 feet, (4) on government-owned land, (5) outside of the dike complex and as far from known volcanic vents as possible, (6) at least about 1,000 feet from, but within the same hydrogeologic setting as, existing or proposed production wells, and (7) east of well 0902-01. A viable area for drilling a deep monitor well is about a half mile southeast of existing wells 0801-01 to -03 and a half mile north of a known volcanic vent, Puu Luahine.

Water-Resources Investigations Report↗

Water resources of Windward Oahu, Hawaii

Windward Oahu lies in a large cavity--an erosional remnant of the Koolau volcanic dome at its greatest stage of growth. Outcrops include volcanic rocks associated with caldera collapse and the main fissure zone which is marked by a dike complex that extends along the main axis of the dome. The fissure zone intersects and underlies the Koolau Range north of Waiahole Valley. South of Waiahole Valley, the crest of the Koolau Range is in the marginal dike zone, an area of scattered dikes. The crest of the range forms the western boundary of windward Oahu. Dikes, mostly vertical and parallel or subparallel to the fissure zone, control movement and discharge of ground water because they are less permeable than the rocks they intrude. Dikes impound or partly impound ground water by preventing or retarding its movement toward discharge points. The top of this water, called high-level water in Hawaii, is at an altitude of about 1,000 feet in the north end of windward Oahu and 400 feet near the south end in Waimanalo Valley. It underlies most of the area and extends near or to the surface in poorly permeable rocks in low-lying areas. Permeability is high in less weathered mountain areas and is highest farthest away from the dike complex. Ground-water storage fluctuates to some degree owing to limited changes in the level of the ground-water reservoir--maximum storage is about 60,000 million gallons. The fluctuations control the rate at which ground water discharges. Even at its lowest recorded level, the reservoir contains a major part of the storage capacity because most of the area is perennially saturated to or near the surface. Tunnels have reduced storage by about 26,000 million gallons--only a fraction of the total storage--by breaching dike controls. Much of the reduction in storage can be restored if the .breached dike controls are replaced by flow-regulating bulkheads. Perennial streams intersect high-level water and collectively form its principal discharge. The larger streams are those that cut deepest into high-level reservoirs. Except near the coast in the northern end of the area, where dikes are absent, total base flow of streams equals total ground-water discharge. Development of high-level water by tunnels and wells diverts ground-water discharge from streams, decreasing the base flow of these streams. Construction of Haiku tunnel decreased the flow of Kahaluu Stream, 2 ? miles away, by about 26 percent. The dependable flow of water is estimated at 118 mgd (million gallons per day), of which 84 mgd is discharged by streams, tunnels, springs, and wells The remaining 34 mgd is underflow, most of it discharging into the sea near the northern end of ,the area. Average flow is estimated at 220 mgd, of which 159 mgd is. inventoried flow and 61 mgd is estimated underflow. Specific capacity of wells tapping lava flows of the Koolau Volcanic Series ranges from less than 1 to 11 gallons per minute per foot of drawdown in the dike-complex zone and from 2 to 100 in the marginal dike zone. A transmissivity of 4,000,000 gallons per day per foot was determined for the basal aquifer. Permeabilities of rocks in high mountainous areas penetrated by water-development tunnels were compared by recession constants determined from free-flow drainage. Evapotranspiration was estimated from regression curves obtained by correlating median annual rainfall and median annual pan evaporation. Evapotranspiration values from these curves compared favorably w4th values obtained from water-budget listings of rainfall and measured ground-water flow. The chemical quality of water in wells and tunnels tapping rocks of the Koolau and Honolulu Volcanic Series is excellent. Except in a few isolated areas near the shore, the chloride content of the water from these sources is generally less than 100 parts per million. Wells tapping calcareous materials are subject to sea-water contamination under heavy pumping.

Water Supply Paper↗

Costimulatory receptors in a teleost fish: Typical CD28, elusive CTLA4

T cell activation requires both specific recognition of the peptide-MHC complex by the TCR and additional signals delivered by costimulatory receptors. We have identified rainbow trout sequences similar to CD28 (rbtCD28) and CTLA4 (rbtCTLA4). rbtCD28 and rbtCTLA4 are composed of an extracellular Ig-superfamily V domain, a transmembrane region, and a cytoplasmic tail. The presence of a conserved ligand binding site within the V domain of both molecules suggests that these receptors likely recognize the fish homologues of the B7 family. The mRNA expression pattern of rbtCD28 and rbtCTLA4 in naive trout is reminiscent to that reported in humans and mice, because rbtCTLA4 expression within trout leukocytes was quickly up-regulated following PHA stimulation and virus infection. The cytoplasmic tail of rbtCD28 possesses a typical motif that is conserved in mammalian costimulatory receptors for signaling purposes. A chimeric receptor made of the extracellular domain of human CD28 fused to the cytoplasmic tail of rbtCD28 promoted TCR-induced IL-2 production in a human T cell line, indicating that rbtCD28 is indeed a positive costimulator. The cytoplasmic tail of rbtCTLA4 lacked obvious signaling motifs and accordingly failed to signal when fused to the huCD28 extracellular domain. Interestingly, rbtCTLA4 and rbtCD28 are not positioned on the same chromosome and thus do not belong to a unique costimulatory cluster as in mammals. Finally, our results raise questions about the origin and evolution of positive and negative costimulation in vertebrate immune systems. T cell activation is initiated through complex cell-to-cell interactions. TCRs expressed on the surface of T cells first recognize antigenic peptides presented by MHC molecules on the surface of APCs. TCRs and other surface receptors and ligands stabilize the contact between T cells and APCs, which triggers signal transduction pathways resulting in T cell activation. According to the two-signal model ( 1 , 2 ), T cell activation by Ag requires both specific recognition of the peptide by the TCR (signal 1) and additional signals delivered by other costimulatory receptors (signal 2). Among the known costimulatory receptors, CD28 and CTLA4 (also known as CD152), which are expressed on T cells and bind their corresponding ligands B7-1/B7-2 (CD80/CD86) on APCs, represent a well-studied system in mammals ( 3 ). CD28 is a glycosylated homodimeric protein expressed on the surface of double-positive thymocytes, mature CD4 + T cells, CD11b − CD8 + T cells, and γδ CD3 + T cells ( 4 , 5 ). CD28 is expressed at higher levels on activated T cells than on resting cells ( 6 ). In mammals, CD28 binds to B7-1 and B7-2, which are expressed on the surface of APCs, and delivers a critical costimulatory signal to T lymphocytes. In the absence of CD28 ligation, TCR binding either induces apoptosis or anergy in T cells ( 5 ). Engagement of CD28 alone cannot activate T cells, even if synergetic effects are provided via stimulation by T cell mitogens or anti-CD3 treatment ( 7 ). A tyrosine-based motif in cytoplasmic tail of CD28 functions as a binding site for the p85 PI3K subunit when it is phosphorylated ( 8 , 9 ). Other CD28 intracytoplasmic motifs, which associates with IL-2-inducible tyrosine kinase, lymphocyte-specific tyrosine kinase, and the adaptor growth-factor receptor bound protein-2 are responsible for signal transduction ( 10 , 11 , 12 ). The binding of growth-factor receptor bound protein-2 to CD28 also activates the GTPase RAS ( 13 ). CD28 signaling is also thought to contribute to the mobilization of lipid rafts to the immunological synapse ( 14 ), the region of contact between T cell and APC, which lowers the overall threshold of TCR engagement required for effective cytokine production and proliferation ( 15 ). In contrast, CTLA4 is a powerful negative regulator of T cell activation and was first cloned via differential screening of a cytotoxic T cell cDNA library ( 16 ). CD28 and CTLA4 belong to the same family and share high sequence similarity to each other ( 16 , 17 ). Both receptors interact with B7-1 and/or B7-2 but induce different signals: CD28 amplifies signaling triggered by the TCR-CD3 complex, whereas CTLA4 generates negative signals that inhibit T cell activation ( 18 ). CTLA4 has higher affinity for B7-1 and B7-2 compared with CD28, and its expression is also induced by TCR engagement ( 19 ). The mechanisms of CTLA4-mediated suppression likely involve both competition with CD28 for B7-1/B7-2 binding and potent inhibitory signals delivered by CTLA4 ( 20 ). The inhibitory signaling mechanisms triggered by CTLA4 are not clear. The CTLA4 cytoplasmic tail lacks typical ITIM motifs and shares with CD28 a p85 binding site ( 21 ). Thus, the extent of an immune response is likely controlled through the finely tuned expression of costimulatory receptors from the CD28/CTLA4 family on the surface of activated T cells ( 22 , 23 ). Very little is known about T cell responses and activation in bony fish. TCR-αβ cDNAs ( 24 , 25 , 26 , 27 ) and polymorphic class IA and class IIA/B MHC molecules ( 28 , 29 , 30 ) have been reported in several species, suggesting that the fish TCR recognizes antigenic peptides presented by MHC molecules similar to that of mammals. T cell-mediated responses in fish are supported by several lines of evidence. Allograft rejection provided the first experimental indications suggesting that bony fish possess a functional T cell-mediated immune response ( 31 , 32 ). In vitro assays for allospecific cytotoxicity have also been established using clonal and nonclonal catfish cell lines ( 33 , 34 ) or clonal rainbow trout ( 35 ). Autologous cell-mediated specific lysis of virus-infected syngenic target cells has also been reported in cloned goldfish ( 36 , 37 ). Finally, both public and private T cell-specific expansions have been observed in rainbow trout during secondary immune responses to viral hemorrhagic septicemia virus (VHSV), 3 a fish rhabdovirus, using TCR-β CDR3-length spectratyping ( 38 ). TCR-MHC-peptide interactions induce signaling events through CD3 in mammals and most likely in lower vertebrates because a complete set of CD3 genes, including TCR ζ, CD3 ε, and CD3 γδ, has been found in Pufferfish and Xenopus ( 39 , 40 ). CD8α has been identified in rainbow trout ( 41 ); however, the cytoplasmic tail lacks the consensus p56 lck motif, suggesting that TCR/CD3/CD8-mediated signaling events may be different in teleosts. In this study, we have identified and initially characterized two members of the CD28 family in rainbow trout, rbtCD28 and rbtCTLA4. Their sequence features and expression patterns suggest that they are the likely homologues of mammalian CD28 and CTLA4. The potential costimulatory capacities of these fish receptors were investigated using a human T cell line expressing chimeric receptors composed of the extracellular domain of human CD28 (hCD28) fused to the cytoplasmic tail of rbtCD28 or rbtCTLA4. The chimeric hCD28-rbtCD28 receptor mediated enhanced TCR-induced IL-2 production, suggesting a costimulatory function for rbtCD28. In contrast, the divergent cytoplasmic tail from rbtCTLA4 did not mediate similar signaling activities. This study therefore provides the first characterization of costimulatory receptors in lower vertebrates.

Journal of Immunology↗

The Coles Hill uranium deposit, Virginia, USA: Geology, geochemistry, geochronology, and genetic model

The Coles Hill uranium deposit with an indicated resource of about 130 million lbs. of U 3 O 8 is the largest unmined uranium deposit in the United States. The deposit is hosted in the Taconian (approximately 480 – 450 Ma) Martinsville igneous complex, which consists of the Ordovician Leatherwood Granite (granodiorite) and Silurian Rich Acres Formation (diorite). The host rock was metamorphosed to orthogneiss during the Alleghanian orogeny (approximately 325 – 260 Ma) when it also underwent dextral strike-slip movement along the Brookneal shear zone. During the Triassic, extensional tectonics led to the development of the Dan River Basin that lies east of Coles Hill. The mineralized zone is hosted in brittle structures in the footwall of the Triassic Chatham fault that forms the western edge of the basin. Within brittle fracture zones, uranium silicate and uranium-bearing fluorapatite with traces of brannerite form veins and breccia fill with chlorite, quartz, calcite, titanium oxide, pyrite, and calcite. Uranium silicates also coat and replace primary titanite, zircon, ilmenite, and sulfides. Sodium metasomatism preceded and accompanied uranium mineralization, pervasively altering host rock, and forming albite from primary feldspar, depositing limpid albite rims on feldspar, altering titanite to titanium oxide and calcite and forming riebeckite. Various geothermometers suggest temperatures of less than approximately ~200°C during mineralization. In situ U-Pb analyses of titanite, Ti-oxide, and apatite, and Rb/Sr and U/Pb isotope-systematics of whole rock samples resolve the timing of geologic processes affecting Coles Hill. The host Leatherwood granite containing primary euhedral titanite is dated at 450 – 445 Ma, in agreement with previously obtained ages from zircon in the Martinsville igneous complex. A regional metamorphic event at 330 – 310 Ma formed anhedral titanite and some apatite, re-equilibrated whole rock Rb/Sr and U-Pb isotopes and is interpreted to have coincided with movement along the Brookneal shear zone. During shearing and metamorphism primary refractory uranium-bearing minerals including titanite, zircon, and uranothorite were recrystallized and uranium was liberated and incorporated locally into hematite, clay, and other fine-grained minerals. Uranium mineralization was accompanied by a metasomatic episode between 250 and 200 Ma that reset the Rb-Sr and U-Pb isotope systems, forming titanite and apatite that are associated and in places intimately intergrown with uranium silicate dating mineralization. This event coincides with rifting that formed the Dan River Basin and was a precursor to the breakup of Pangea. Based on the close spatial and temporal association of uranium with apatite, we conclude that uranium was carried as a uranyl-phosphate complex. The release of calcium during sodium metasomatic alteration of primary calcic feldspar and titanite in the host rock initiated successive reactions in which uranium and phosphate in mineralizing fluids combined with calcium to form U-enriched fluorapatite. Excess uranium was locally reduced by coupled redox reactions involving ferrous iron and sulfide minerals in the host rock, forming uranium silicates. Based on the deposit mineralogy, oxygen isotope geochemistry and trace element characteristics of uranium silicate and gangue minerals the primary mineralizing fluids likely included connate and/or meteoric water sourced from the local Dan River Basin. High heat flow related to Mesozoic rifting may have driven these (P-Na-F-rich) brines through local aquifers and into basin margin faults, transporting uranium from the basin or mobilizing uranium from previously formed U-minerals in the Brookneal shear zone, or from U-enriched older basement rock.

Virginia↗

Towards an urgent yet deliberate conservation strategy: Sustaining social-ecological systems in rangelands of the Northern Great Plains, Montana

Urgency and deliberateness are often at odds when executing conservation projects, especially as the scale and complexity of objectives increases. The pace of environmental degradation supports immediate and measurable action. However, best practices for adaptive governance and building resilient social-ecological systems call for more deliberate efforts and participatory processes, which can be slow. We explore conflicts between urgency and deliberateness and the potential for their reconciliation through a case study of the challenges of conserving native rangelands in North America’s Northern Great Plains, an ecoregion targeted for global conservation initiatives. This region is undergoing a significant social-ecological transition, which underscores a need to rethink conservation strategies in light of the social-ecological system dynamics and potential future trajectories. Based on a structured narrative literature review process and iterative engagement with key regional stakeholders, we identify three interrelated factors critical to the system’s future outcomes that illustrate system complexity as well as trade-offs between urgent and deliberate action and unilateral and multilateral approaches to conservation: (1) influences of land management on biodiversity, (2) economic restructuring and shifting land use priorities, and (3) changing climate and disturbance regimes. We identify key gaps in the literature for each factor and across the factors—an effort that informs our call for research and practice agendas that address uncertainty and complexity at regional scales through more inclusive and future-oriented approaches.

Montana↗

Deglaciation of the northwestern White Mountains, New Hampshire

The mode of deglaciation in the northwestern White Mountains of New Hampshire has been controversial since the mid 1800's. Early workers believed that active ice deposited the Bethlehem Moraine complex in the Ammonoosuc River basin during recession of the last ice sheet. In the 1930's this deglaciation model was replaced by the concept of widespread simultaneous stagnation and downwastage of Late Wisconsinan ice. The present authors reexamined the Bethlehem Moraine complex and support the original interpretation of a series of moraines deposited by active ice. We found other moraine clusters of similar age to the northeast in the Johns River and Israel River basins. Ice-marginal deposits that probably correlate with the Bethlehem Moraine also occur west of Littleton. The Bethlehem Moraine complex and equivalent deposits in adjacent areas were formed by readvance and oscillatory retreat of the Connecticut Valley lobe of the Laurentide Ice Sheet. This event is called the Littleton-Bethlehem Readvance. Throughout the study area, sequences of glaciolacustrine deposits and meltwater drainage channels indicate progressive northward recession of the glacier margin. Radiocarbon dates from nearby New England and Québec suggest that the ice sheet withdrew from this part of the White Mountains between about 12 500 and 12 000 14 C yr BP. We attribute the Littleton- Bethlehem Readvance to a brief climatic cooling during Older Dyas time, close to 12,000 BP.

New Hampshire↗

Accounting for spatial habitat and management boundaries when estimating forest bird population distribution and density: Inferences from a soap film smoother

Birds are often obligate to specific habitats which can result in study areas with complex boundaries due to sudden changes in vegetation or other features. This can result in study areas with concave arcs or that include holes of unsuitable habitat such as lakes or agricultural fields. Spatial models used to produce species’ distribution and density estimates need to respect such boundaries to make informed decisions for species conservation and management. The soap film smoother is one model for complex study regions which controls the boundary behaviour, ensuring realistic values at the edges of the region. We apply the soap film smoother to account for boundary effects and compare it with thin plate regression spline (TPRS) smooth and design-based conventional distance sampling methods to produce abundance estimates from point-transect distance sampling collected data on Hawai‘i ‘Ākepa Loxops coccineus in the Hakalau Forest Unit of the Big Island National Wildlife Refuge Complex, Hawai‘i Island, USA. The soap film smoother predicted zero or near zero densities in the northern part of the domain and two hotspots (in the southern and central parts of the domain). Along the boundary the soap film model predicted relatively high densities where ‘Ākepa occur in the adjacent forest and near zero elsewhere. The design-based and soap film abundance estimates were nearly identical. The width of the soap film confidence interval was 16.5% and 0.8% wider than the width of the TPRS smooth and design-based confidence intervals, respectively. The peaks in predicted densities along the boundary indicates leakage by the TPRS smooth. We provide a discussion of the statistical methods, biological findings and management implications of applying soap film smoothers to estimate forest bird population status.

Hawaii↗

Systematic studies of Oryzomyine rodents (Muridae, Sigmodontinae): diagnoses and distributions of species formerly assigned to Oryzomys 'capito'

We describe the morphological species-boundaries and geographic distributions of ten Neotropical Oryzomys based on analyses of museum specimens (skins and skulls, examples preserved in fluid, chromosomal spreads, and information about collection sites from skin tags, field catalogs, and other sources). These species have been regarded as members of an Oryzomys capito complex and for a long time were consolidated into a single entity identified as O. capito. Our study documents the following: 1. Defining the limits of species within the O. capito complex first requires a comprehensive review and rigorous definition of O. capito itself. We consider Fischer's (1814) Mus megacephalus to be valid and available, designate a neotype to bear the name, and reinstate it as a senior synonym of capito Olfers (1818). We then provide a working definition of O. megacephalus and its close relative, O. laticeps, derived from analyses of morphometric variation, estimates of geographic distributions, and evaluations of synonyms. In our view, O. megacephalus occurs in Amazonia but also extends into eastern Paraguay; its synonyms are capito Olfers (1818), cephalotes Desmarest (1819), velutinus Allen and Chapman (1893), goeldi Thomas (1897), modestus Allen (1899), and perenensis Allen (1901). Oryzomys laticeps Lund (1840) occurs in the Atlantic Forest region of eastern Brazil. We designate a lectotype for laticeps and allocate the names saltator Winge (1887) and oniscus Thomas (1904) as synonyms. 2. We provide the first comprehensive taxonomic revision of Oryzomys yunganus Thomas (1902). Its range covers tropical evergreen rainforest formations in the Guiana region and the Amazon Basin where, as documented by voucher specimens, it has been collected at the same localities as O. megacephalus, O. nitidus, and O. tern of carotid arterial circulation, occlusal patterns of second upper and lower molars, cranial proportions, and chromosomal features. Appreciable intraspecific geographic variation occurs in diploid number of chromosomes and frequency of occurrence of the hypothenar plantar pad, but sampling inadequacies obscure the significance of this variation. Large body size is characteristic of populations in the western Amazon Basin and in the tepui region of eastern Venezuela; smaller size characterizes populations in the Guianas and along the eastern margin of the Amazon Basin. No other scientific name has been correctly associated with the species. Samples from Mirador, Palmera, and Mera in the western Andean foothills of central Ecuador possess a combination of pelage, cranial, and dental traits that distinguish them from all samples of O. yunganus. These specimens are the basis for a new species we describe here, one that is more closely related to O. yunganus than to any other member of the former O. 'capito' complex. 3. We redescribe Oryzomys bolivaris (reviewed by Pine, 1971, under the name O. bombycinus), amplify its geographic range, and contrast it with O. talamancae and O. alfaroi, two sympatric congeners often confused with it. A distinctive set of morphological traits allows unambiguous identification of specimens belonging to O. bolivaris. It is a trans-Andean species recorded from very wet tropical evergreen rainforests extending from eastern Honduras and Nicaragua through Costa Rica and Panama to western Colombia and Ecuador. Allen's (1901) bolivaris is the oldest name for this species; castaneus Allen (1901), rivularis Allen (1901), bombycinus Goldman (1912), alleni Goldman (1915), and orinus Pearson (1939) are synonyms. 4. We revise the definition of Oryzomys talamancae Allen (1891) provided by Musser and Williams (1985), document additional specimens, describe karyotypes from Ecuadoran and Venezuelan samples, and contrast its morphology, chromosomes, and distribution with those of O. alfaroi and O. megacephalus. The geographic distribution of O. talamancae is also trans-Andean, but it inh

Bulletin of the American Museum of Natural History↗

Landscape change in the southern Piedmont: challenges, solutions, and uncertainty across scales

The southern Piedmont of the southeastern United States epitomizes the complex and seemingly intractable problems and hard decisions that result from uncontrolled urban and suburban sprawl. Here we consider three recurrent themes in complicated problems involving complex systems: (1) scale dependencies and cross-scale, often nonlinear relationships; (2) resilience, in particular the potential for complex systems to move to alternate stable states with decreased ecological and/or economic value; and (3) uncertainty in the ability to understand and predict outcomes, perhaps particularly those that occur as a result of human impacts. We consider these issues in the context of landscape-level decision making, using as an example water resources and lotic systems in the Piedmont region of the southeastern United States.

Conservation Ecology↗