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At least 1,513 records · Page 84Linked to original sources

USGS2021

NGA-subduction global ground motion models with regional adjustment factors

We develop semi-empirical ground motion models (GMMs) for peak ground acceleration, peak ground velocity, and 5%-damped pseudo-spectral accelerations for periods from 0.01 to 10 s, for the median orientation-independent horizontal component of subduction earthquake ground motion. The GMMs are applicable to interface and intraslab subduction earthquakes in Japan, Taiwan, Mexico, Central America, South America, Alaska, the Aleutian Islands, and Cascadia. The GMMs are developed using a combination of data inspection, data regression with respect to physics-informed functions, ground-motion simulations, and geometrical constraints for certain model components. The GMMs capture observed differences in source and path effects for interface and intraslab events, conditioned on moment magnitude, rupture distance, and hypocentral depth. Site effect and aleatory variability models are shared between event types. Regionalized GMM components include the model constant (that controls ground motion amplitude), anelastic attenuation, magnitude-scaling break point, linear site response, and sediment depth terms. We develop models for the aleatory between-event variability ( τ ) "> ( τ ) , within-event variability ( ϕ ) "> ( ϕ ) , single-station within-event variability ( ϕ SS ) "> ( ϕ SS ) , and site-to-site variability ( ϕ S 2 S ) "> ( ϕ S 2 S ) . Ergodic analyses should use the median GMM and aleatory variability computed using the between-event and within-event variability models. An analysis incorporating non-ergodic site response should use the median GMM at the reference shear-wave velocity condition, a site-specific site response model, and aleatory variability computed using the between-event and single-station within-event variability models. Epistemic uncertainty in the median model is represented by standard deviations on the regional model constants, which facilitates scaled-backbone representations of model uncertainty in hazard analyses.

Earthquake Spectra↗

USGS2021

NGA-Subduction research program

This article summarizes the Next Generation Attenuation (NGA) Subduction (NGA-Sub) project, a major research program to develop a database and ground motion models (GMMs) for subduction regions. A comprehensive database of subduction earthquakes recorded worldwide was developed. The database includes a total of 214,020 individual records from 1,880 subduction events, which is by far the largest database of all the NGA programs. As part of the NGA-Sub program, four GMMs were developed. Three of them are global subduction GMMs with adjustment factors for up to seven worldwide regions: Alaska, Cascadia, Central America and Mexico, Japan, New Zealand, South America, and Taiwan. The fourth GMM is a new Japan-specific model. The GMMs provide median predictions, and the associated aleatory variability, of RotD50 horizontal components of peak ground acceleration, peak ground velocity, and 5%-damped pseudo-spectral acceleration (PSA) at oscillator periods ranging from 0.01 to 10 s. Three GMMs also quantified “within-model” epistemic uncertainty of the median prediction, which is important in regions with sparse ground motion data, such as Cascadia. In addition, a damping scaling model was developed to scale the predicted 5%-damped PSA of horizontal components to other damping ratios ranging from 0.5% to 30%. The NGA-Sub flatfile, which was used for the development of the NGA-Sub GMMs, and the NGA-Sub GMMs coded on various software platforms, have been posted for public use.

Earthquake Spectra↗

USGS2008

Tracing the first steps of American sturgeon pioneers in Europe

Background. A Baltic population of Atlantic sturgeon was founded ???1,200 years ago by migrants from North America, but after centuries of persistence, the population was extirpated in the 1960s, mainly as a result of over-harvest and habitat alterations. As there are four genetically distinct groups of Atlantic sturgeon inhabiting North American rivers today, we investigated the genetic provenance of the historic Baltic population by ancient DNA analyses using mitochondrial and nuclear markers. Results. The phylogeographic signal obtained from multilocus microsatellite DNA genotypes and mitochondrial DNA control region haplotypes, when compared to existing baseline datasets from extant populations, allowed for the identification of the region-of-origin of the North American Atlantic sturgeon founders. Moreover, statistical and simulation analyses of the multilocus genotypes allowed for the calculation of the effective number of individuals that originally founded the European population of Atlantic sturgeon. Our findings suggest that the Baltic population of A. oxyrinchus descended from a relatively small number of founders originating from the northern extent of the species' range in North America. Conclusion. These results demonstrate that the most northerly distributed North American A. oxyrinchus colonized the Baltic Sea ???1,200 years ago, suggesting that Canadian specimens should be the primary source of broodstock used for restoration in Baltic rivers. This study illustrates the great potential of patterns obtained from ancient DNA to identify population-of-origin to investigate historic genotype structure of extinct populations. ?? 2008 Ludwig et al; licensee BioMed Central Ltd.

BMC Evolutionary Biology↗

USGS2013

White-nose syndrome in bats: Illuminating the darkness

Happy ten-year anniversary to BMC Biology! We can attest to the effectiveness of the journal in reaching a great diversity of scientists based on reader responses to our commentary [1] about bat white-nose syndrome (WNS) two years ago. WNS is still on course to rank among the most destructive wildlife diseases to emerge in recent history, and it has continued to have unprecedented effects on populations of hibernating bats in eastern North America. At the time of our last writing in November 2010, the cold-adapted fungus then presumed to cause WNS ( Geomyces destructans ) had spread about 1,300 km from an index site in New York (Figure 1). In those early years of the epizootic, WNS caused a staggering wave of mass mortality among all six species of hibernating bats that occur in north-eastern North America. Since November 2010, WNS has spread into eight additional US states and two more Canadian provinces (Figure 1), and has continued to cause mortality in those six species most affected during the early years of the epizootic. Although part of a mostly tragic story has continued to unfold as new areas are affected, anecdotal signs are emerging that all may not be lost when it comes to hibernating bats and WNS. Amid the continued large-scale population declines of certain species, we have yet to see mass mortality in some of the more westerly areas where the fungus was detected two winters ago (Figure 1). Also, recently disease without obvious mortality was diagnosed in gray bats ( Myotis grisescens ) - an endangered species thought by many two years ago to be at high risk of extinction from WNS. Clearly, large gaps in our understanding of WNS remain, but some have been filled since we last communicated with readers of BMC Biology.

BMC Biology↗

USGS2013

Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability

Background: The role of gulls in the ecology of avian influenza (AI) is different than that of waterfowl. Different constellations of subtypes circulate within the two groups of birds and AI viruses isolated from North American gulls frequently possess reassortant genomes with genetic elements from both North America and Eurasian lineages. A 2008 isolate from a Newfoundland Great Black-backed Gull contained a mix of North American waterfowl, North American gull and Eurasian lineage genes. Methods: We isolated, sequenced and phylogenetically compared avian influenza viruses from 2009 Canadian wild birds. Results: We analyzed six 2009 virus isolates from Canada and found the same phylogenetic lineage had persisted over a larger geographic area, with an expanded host range that included dabbling and diving ducks as well as gulls. All of the 2009 virus isolates contained an internal protein coding set of genes of the same Eurasian lineage genes except PB1 that was from a North American lineage, and these genes continued to evolve by genetic drift. We show evidence that the 2008 Great Black-backed Gull virus was derived from this lineage with a reassortment of a North American PA gene into the more stable core set of internal protein coding genes that has circulated in avian populations for at least 2 years. From this core, the surface glycoprotein genes have switched several times creating H13N6, H13N2, and H16N3 subtypes. These gene segments were from North American lineages except for the H16 and N3 vRNAs. Conclusions: This process appears similar to genetic shifts seen with swine influenza where a stable "triple reassortant internal gene" core has circulated in swine populations with genetic shifts occurring with hemaggluttinin and neuraminidase proteins getting periodically switched. Thus gulls may serve as genetic mixing vessels for different lineages of avian influenza, similar to the role of swine with regards to human influenza. These findings illustrate the need for continued surveillance in gull and waterfowl populations, both on the Pacific and especially Atlantic coasts of North America, to document virus intercontinental movement and the role of gull species in the evolution and epidemiology of AI.

Virology Journal↗

USGS2014

Comparison of survival patterns of northern and southern genotypes of the North American tick Ixodes scapularis (Acari: Ixodidae) under northern and southern conditions

Background Several investigators have reported genetic differences between northern and southern populations of Ixodes scapularis in North America, as well as differences in patterns of disease transmission. Ecological and behavioral correlates of these genetic differences, which might have implications for disease transmission, have not been reported. We compared survival of northern with that of southern genotypes under both northern and southern environmental conditions in laboratory trials. Methods Subadult I. scapularis from laboratory colonies that originated from adults collected from deer from several sites in the northeastern, north central, and southern U.S. were exposed to controlled conditions in environmental chambers. Northern and southern genotypes were exposed to light:dark and temperature conditions of northern and southern sites with controlled relative humidities, and mortality through time was recorded. Results Ticks from different geographical locations differed in survival patterns, with larvae from Wisconsin surviving longer than larvae from Massachusetts, South Carolina or Georgia, when held under the same conditions. In another experiment, larvae from Florida survived longer than larvae from Michigan. Therefore, survival patterns of regional genotypes did not follow a simple north–south gradient. The most consistent result was that larvae from all locations generally survived longer under northern conditions than under southern conditions. Conclusions Our results suggest that conditions in southern North America are less hospitable than in the north to populations of I. scapularis . Southern conditions might have resulted in ecological or behavioral adaptations that contribute to the relative rarity of I. scapularis borne diseases, such as Lyme borreliosis, in the southern compared to the northern United States.

Parasites & Vectors↗

USGS2015

Introduction to special section: China shale gas and shale oil plays

In the last 10 years, the success of shale gas and shale oil productions as a result of technological advances in horizontal drilling, hydraulic fracturing and nanoscale reservoir characterization have revolutionized the energy landscape in the United States. Resource assessment by the China Ministry of Land and Resources in 2010 and 2012 and by the U.S. Energy Information Administration in 2011 and 2013 indicates China’s shale gas resource is the largest in the world and shale oil resource in China is also potentially significant. Inspired by the success in the United States, China looks forward to replicating the U.S. experience to produce shale gas to power its economy and reduce greenhouse gas emissions. By 2014, China had drilled 400 wells targeting marine, lacustrine, and coastal swamp transitional shales spanning in age from the Precambrian to Cenozoic in the last five years. So far, China is the leading country outside of North America in the viable production of shale gas, with very promising prospects for shale gas and shale oil development, from the Lower Silurian Longmaxi marine shale in Fuling in the southeastern Sichuan Basin. Geological investigations by government and academic institutions as well as exploration and production activities from industry indicate that the tectonic framework, depositional settings, and geomechanical properties of most of the Chinese shales are more complex than many of the producing marine shales in the United States. These differences limit the applicability of geologic analogues from North America for use in Chinese shale oil and gas resource assessments, exploration strategies, reservoir characterization, and determination of optimal hydraulic fracturing techniques. Understanding the unique features of the geology, shale oil and gas resource potential, and reservoir characteristics is crucial for sweet spot identification, hydraulic fracturing optimization, and reservoir performance prediction. Even though China shale gas and shale oil exploration is still in an early stage, limited data are already available. We are pleased to have selected eight high-quality papers from fifteen submitted manuscripts for this timely section on the topic of China shale gas and shale oil plays. These selected papers discuss various subject areas including regional geology, resource potentials, integrated and multidisciplinary characterization of China shale reservoirs (geology, geophysics, geochemistry, and petrophysics) China shale property measurement using new techniques, case studies for marine, lacustrine, and transitional shale deposits in China, and hydraulic fracturing. One paper summarizes the regional geology and different tectonic and depositional settings of the major prospective shale oil and gas plays in China. Four papers concentrate on the geology, geochemistry, reservoir characterization, lithologic heterogeneity, and sweet spot identification in the Silurian Longmaxi marine shale in the Sichuan Basin in southwest China, which is currently the primary focus of shale gas exploration in China. One paper discusses the Ordovician Salgan Shale in the Tarim Basin in northwest China, and two papers focus on the reservoir characterization and hydraulic fracturing of Triassic lacustrine shale in the Ordos Basin in northern China. Each paper discusses a specific area.

Interpretation↗

USGS2009

A review of the role of contaminants in amphibian declines

For the past decade, there has been growing concern about worldwide declines in amphibian populations, 1,2 and a general phenomenon of declining populations was recognized in the mid-1990's. Subsequent research has validated this concern. 3,4 These population declines have been defined either as decreases in numbers of individuals in an area or, preferably because of greater reliability, a decrease in the number of sites occupied by breeding amphibians. Widespread population declines have occurred in North America, 5-7 Europe, 3,8,9 Australia, 10 and Central and South America. 11,12 Population declines in eastern Europe, Asia, and Africa have been suggested but are not as well documented. Worldwide, more than 500 populations of frogs and salamanders have been listed as declining or of concern. 4,13 In the United States, a third of known amphibian species are thought to be in trouble.14 While the most severely affected populations are in the mountains of the western United States, serious declines have also been observed among some species in the Midwest and Southeast. 2

Book chapter↗

USGS2000

Late Albian Kiowa-Skull Creek marine transgression, lower Dakota Formation, eastern margin of Western Interior Seaway, U.S.A

An integrated geochemical-sedimentological project is studying the paleoclimatic and paleogeographic characteristics of the mid-Cretaceous greenhouse world of western North America. A critical part of this project, required to establish a temporal framework, is a stratigraphic study of depositional relationships between the Albian-Cenomanian Dakota and the Upper Albian Kiowa formations of the eastern margin of the Western Interior Seaway (WIS). Palynostratigraphic and sedimentologic analyses provide criteria for the Dakota Formation to be divided into three sedimentary sequences bounded by unconformities (D 0 , D 1 , and D 2 ) that are recognized from western Iowa to westernmost Kansas. The lowest of these sequences, defined by unconformities D 0 and D 1 , is entirely Upper Albian, and includes the largely nonmarine basal Dakota (lower part of the Nishnabotna Member) strata in western Iowa and eastern Nebraska and the marine Kiowa Formation to the southwest in Kansas. The gravel-rich fluvial deposits of the basal part of the Nishnabotna Member of the Dakota Formation correlate with transgressive marine shales of the Kiowa Formation. This is a critical relationship to establish because of the need to correlate between marine and nonmarine strata that contain both geochronologic and paleoclimatic proxy data. The basal gravel facies (up to 40 m thick in western Iowa) aggraded in incised valleys during the Late Albian Kiowa-Skull Creek marine transgression. In southeastern Nebraska, basal gravels intertongue with carbonaceous mudrocks that contain diverse assemblages of Late Albian palynomorphs, including marine dinoflagellates and acritarchs. This palynomorph assemblage is characterized by occurrences of palynomorph taxa not known to range above the Albian Kiowa-Skull Creek depositional cycle elsewhere in the Western Interior, and correlates to the lowest of four generalized palynostratographic units that are comparable to other palynological sequences elsewhere in North America. Tidal rhythmites in mudrocks at the Ash Grove Cement Quarry in Louisville (Cass County), Nebraska record well-developed diurnal and semimonthly tidal cycles, and moderately well developed semiannual cycles. These tidal rhythmites are interpreted to have accumulated during rising sea level at the head of a paleoestuary that experienced at least occasional mesotidal conditions. This scenario places the gravel-bearing lower part of the Nishnabotna Member of the Dakota Formation in the mouth of an incised valley of an Upper Albian transgressive systems tract deposited along a tidally influenced coast. Furthermore, it provides a depositional setting consistent with the biostratigraphic correlation of the lower part of the Nishnabotna Member of the Dakota Formation to the marine Kiowa Formation of Kansas.

Iowa↗

USGS2003

Phylogeny and biogeography of Pacific Rubus subgenus Idaeobatus (Rosaceae) species: Investigating the origin of the endemic Hawaiian raspberry R. macraei

The endemic Hawaiian raspberries Rubus hawaiensis and R. macraei (both subgenus Idaeobatus ) had been thought to be closely related species until recent molecular studies demonstrated otherwise. These studies suggest that they are the products of separate colonizations to the Hawaiian Islands. Affinities of R. hawaiensis to R. spectabilis of western North America were clearly confirmed. However, no clear relation to R. macraei has been published. This study was initiated to examine species of subg. Idaeobatus from the surrounding Pacific region as well as species from other subgenera to better evaluate biogeographic and phylogenetic affinities of R. macraei by means of chromosome analysis and molecular data using the chloroplast gene ndbF . Results show that R. macraei clusters in a clade with species of blackberries, subg. Rubus , and of these it is most closely linked to R. ursinus . Chromosomally, R. macraei is 2 n = 6 x = 42, a number that would be a new report for subg. Idaeobatus . However, polyploidy is common in subg. Rubus . Analyses indicate that R. macraei and R. hawaiensis are derived from separate colonizations from North America and that similarities between them are due to convergent evolution in the Hawaiian environment.

Hawai'i↗

USGS2022

A recombinant rabies vaccine that prevents viral shedding in rabid common vampire bats (Desmodus rotundus)

Vampire bat transmitted rabies (VBR) is a continuing burden to public health and agricultural sectors in Latin America, despite decades-long efforts to control the disease by culling bat populations. Culling has been shown to disperse bats, leading to an increased spread of rabies. Thus, non-lethal strategies to control VBR, such as vaccination, are desired. Here, we evaluated the safety and efficacy of a viral-vectored recombinant mosaic glycoprotein rabies vaccine candidate (RCN-MoG) in vampire bats ( Desmodus rotundus ) of unknown history of rabies exposure captured in México and transported to the United States. Vaccination with RCN-MoG was demonstrated to be safe, even in pregnant females, as no evidence of lesions or adverse effects were observed. We detected rabies neutralizing antibodies in 28% (8/29) of seronegative bats post-vaccination. Survival proportions of adult bats after rabies virus (RABV) challenge ranged from 55–100% and were not significantly different among treatments, pre- or post-vaccination serostatus, and route of vaccination, while eight pups (1–2.5 months of age) used as naïve controls all succumbed to challenge (P<0.0001). Importantly, we found that vaccination with RCN-MoG appeared to block viral shedding, even when infection proved lethal. Using real-time PCR, we did not detect RABV nucleic acid in the saliva samples of 9/10 vaccinated bats that succumbed to rabies after challenge (one was inconclusive). In contrast, RABV nucleic acid was detected in saliva samples from 71% of unvaccinated bats (10/14 sampled, plus one inconclusive) that died of the disease, including pups. Low seroconversion rates post-vaccination and high survival of non-vaccinated bats, perhaps due to earlier natural exposure, limited our conclusions regarding vaccine efficacy. However, our findings suggest a potential transmission-blocking effect of vaccination with RCN-MoG that could provide a promising strategy for controlling VBR in Latin America beyond longstanding culling programs.

San Luis Potosi↗

USGS2009

Experimental infection of a North American raptor, American kestrel (Falco sparverius), with highly pathogenic avian influenza virus (H5N1)

Several species of wild raptors have been found in Eurasia infected with highly pathogenic avian influenza virus (HPAIV) subtype H5N1. Should HPAIV (H5N1) reach North America in migratory birds, species of raptors are at risk not only from environmental exposure, but also from consuming infected birds and carcasses. In this study we used American kestrels as a representative species of a North American raptor to examine the effects of HPAIV (H5N1) infection in terms of dose response, viral shedding, pathology, and survival. Our data showed that kestrels are highly susceptible to HPAIV (H5N1). All birds typically died or were euthanized due to severe neurologic disease within 4-5 days of inoculation and shed significant amounts of virus both orally and cloacally, regardless of dose administered. The most consistent microscopic lesions were necrosis in the brain and pancreas. This is the first experimental study of HPAIV infection in a North American raptor and highlights the potential risks to birds of prey if HPAIV (H5N1) is introduced into North America.

PLoS ONE↗

USGS2011

Alphacoronaviruses in new World bats: Prevalence, persistence, phylogeny, and potential for interaction with humans

Bats are reservoirs for many different coronaviruses (CoVs) as well as many other important zoonotic viruses. We sampled feces and/or anal swabs of 1,044 insectivorous bats of 2 families and 17 species from 21 different locations within Colorado from 2007 to 2009. We detected alphacoronavirus RNA in bats of 4 species: big brown bats (Eptesicus fuscus), 10% prevalence; long-legged bats (Myotis volans), 8% prevalence; little brown bats (Myotis lucifugus), 3% prevalence; and western long-eared bats (Myotis evotis), 2% prevalence. Overall, juvenile bats were twice as likely to be positive for CoV RNA as adult bats. At two of the rural sampling sites, CoV RNAs were detected in big brown and long-legged bats during the three sequential summers of this study. CoV RNA was detected in big brown bats in all five of the urban maternity roosts sampled throughout each of the periods tested. Individually tagged big brown bats that were positive for CoV RNA and later sampled again all became CoV RNA negative. Nucleotide sequences in the RdRp gene fell into 3 main clusters, all distinct from those of Old World bats. Similar nucleotide sequences were found in amplicons from gene 1b and the spike gene in both a big-brown and a long-legged bat, indicating that a CoV may be capable of infecting bats of different genera. These data suggest that ongoing evolution of CoVs in bats creates the possibility of a continued threat for emergence into hosts of other species. Alphacoronavirus RNA was detected at a high prevalence in big brown bats in roosts in close proximity to human habitations (10%) and known to have direct contact with people (19%), suggesting that significant potential opportunities exist for cross-species transmission of these viruses. Further CoV surveillance studies in bats throughout the Americas are warranted.

PLoS ONE↗

USGS2012

Health assessment and seroepidemiologic survey of potential pathogens in wild Antillean manatees (Trichechus manatus manatus)

The Antillean manatee (Trichechus manatus manatus), a subspecies of the West Indian manatee, inhabits fresh, brackish, and warm coastal waters distributed along the eastern border of Central America, the northern coast of South America, and throughout the Wider Caribbean Region. Threatened primarily by human encroachment, poaching, and habitat degradation, Antillean manatees are listed as endangered by the International Union for the Conservation of Nature. The impact of disease on population viability remains unknown in spite of concerns surrounding the species' ability to rebound from a population crash should an epizootic occur. To gain insight on the baseline health of this subspecies, a total of 191 blood samples were collected opportunistically from wild Antillean manatees in Belize between 1997 and 2009. Hematologic and biochemical reference intervals were established, and antibody prevalence to eight pathogens with zoonotic potential was determined. Age was found to be a significant factor of variation in mean blood values, whereas sex, capture site, and season contributed less to overall differences in parameter values. Negative antibody titers were reported for all pathogens surveyed except for Leptospira bratislava, L. canicola, and L. icterohemorrhagiae, Toxoplasma gondii, and morbillivirus. As part of comprehensive health assessment in manatees from Belize, this study will serve as a benchmark aiding in early disease detection and in the discernment of important epidemiologic patterns in the manatees of this region. Additionally, it will provide some of the initial tools to explore the broader application of manatees as sentinel species of nearshore ecosystem health.

PLoS ONE↗

USGS2015

Seasonally-dynamic presence-only species distribution models for a cryptic migratory bat impacted by wind energy development

Understanding seasonal distribution and movement patterns of animals that migrate long distances is an essential part of monitoring and conserving their populations. Compared to migratory birds and other more conspicuous migrants, we know very little about the movement patterns of many migratory bats. Hoary bats ( Lasiurus cinereus ), a cryptic, wide-ranging, long-distance migrant, comprise a substantial proportion of the tens to hundreds of thousands of bat fatalities estimated to occur each year at wind turbines in North America. We created seasonally-dynamic species distribution models (SDMs) from 2,753 museum occurrence records collected over five decades in North America to better understand the seasonal geographic distributions of hoary bats. We used 5 SDM approaches: logistic regression, multivariate adaptive regression splines, boosted regression trees, random forest, and maximum entropy and consolidated outputs to generate ensemble maps. These maps represent the first formal hypotheses for sex- and season-specific hoary bat distributions. Our results suggest that North American hoary bats winter in regions with relatively long growing seasons where temperatures are moderated by proximity to oceans, and then move to the continental interior for the summer. SDMs suggested that hoary bats are most broadly distributed in autumn—the season when they are most susceptible to mortality from wind turbines; this season contains the greatest overlap between potentially suitable habitat and wind energy facilities. Comparing wind-turbine fatality data to model outputs could test many predictions, such as ‘risk from turbines is highest in habitats between hoary bat summering and wintering grounds’. Although future field studies are needed to validate the SDMs, this study generated well-justified and testable hypotheses of hoary bat migration patterns and seasonal distribution.

PLoS ONE↗

USGS2017

Susceptibility and antibody response of the laboratory model zebra finch (Taeniopygia guttata) to West Nile Virus

Since the introduction of West Nile virus (WNV) into North America in 1999 a number of passerine bird species have been found to play a role in the amplification of the virus. Arbovirus surveillance, observational studies and experimental studies have implicated passerine birds (songbirds, e.g., crows, American robins, house sparrows, and house finches) as significant reservoirs of WNV in North America, yet we lack a tractable passerine animal model for controlled studies of the virus. The zebra finch ( Taeniopygia guttata ) serves as a model system across a diversity of fields, and here we develop the zebra finch a songbird model for WNV. Like many natural hosts of WNV, we found that zebra finches developed sufficient viremia to serve as a competent host, yet in general resisted mortality from infection. In the Australian zebra finch (AZF) T . g . castanotis , we detected WNV in the majority of sampled tissues by 4 days post injection (dpi). However, WNV was not detected in tissues of sacrificed birds at 14 dpi, shortly after the development of detectable anti-WNV antibodies in the majority of birds indicating successful viral clearance. We compared susceptibility between the two zebra finch subspecies AZF and Timor zebra finch (TZF) T . g . guttata . Compared to AZF, WNV RNA was detected in a larger proportion of challenged TZF and molecular detection of virus in the serum of TZF was significantly higher than in AZF. Given the observed moderate host competence and disease susceptibility, we suggest that zebra finches are appropriate as models for the study of WNV and although underutilized in this respect, may be ideal models for the study of the many diseases carried and transmitted by songbirds.

PLoS ONE↗

USGS2017

Intraspecific evolutionary relationships among peregrine falcons in western North American high latitudes

Subspecies relationships within the peregrine falcon ( Falco peregrinus ) have been long debated because of the polytypic nature of melanin-based plumage characteristics used in subspecies designations and potential differentiation of local subpopulations due to philopatry. In North America, understanding the evolutionary relationships among subspecies may have been further complicated by the introduction of captive bred peregrines originating from non-native stock, as part of recovery efforts associated with mid 20 th century population declines resulting from organochloride pollution. Alaska hosts all three nominal subspecies of North American peregrine falcons– F . p . tundrius , anatum , and pealei –for which distributions in Alaska are broadly associated with nesting locales within Arctic, boreal, and south coastal maritime habitats, respectively. Unlike elsewhere, populations of peregrine falcon in Alaska were not augmented by captive-bred birds during the late 20 th century recovery efforts. Population genetic differentiation analyses of peregrine populations in Alaska, based on sequence data from the mitochondrial DNA control region and fragment data from microsatellite loci, failed to uncover genetic distinction between populations of peregrines occupying Arctic and boreal Alaskan locales. However, the maritime subspecies, pealei , was genetically differentiated from Arctic and boreal populations, and substructured into eastern and western populations. Levels of interpopulational gene flow between anatum and tundrius were generally higher than between pealei and either anatum or tundrius . Estimates based on both marker types revealed gene flow between augmented Canadian populations and unaugmented Alaskan populations. While we make no attempt at formal taxonomic revision, our data suggest that peregrine falcons occupying habitats in Alaska and the North Pacific coast of North America belong to two distinct regional groupings–a coastal grouping ( pealei ) and a boreal/Arctic grouping (currently anatum and tundrius )–each comprised of discrete populations that are variously intra-regionally connected.

Alaska↗

USGS2018

From top to bottom: Do Lake Trout diversify along a depth gradient in Great Bear Lake, NT, Canada?

Depth is usually considered the main driver of Lake Trout intraspecific diversity across lakes in North America. Given that Great Bear Lake is one of the largest and deepest freshwater systems in North America, we predicted that Lake Trout intraspecific diversity to be organized along a depth axis within this system. Thus, we investigated whether a deep-water morph of Lake Trout co-existed with four shallow-water morphs previously described in Great Bear Lake. Morphology, neutral genetic variation, isotopic niches, and life-history traits of Lake Trout across depths (0–150 m) were compared among morphs. Due to the propensity of Lake Trout with high levels of morphological diversity to occupy multiple habitat niches, a novel multivariate grouping method using a suite of composite variables was applied in addition to two other commonly used grouping methods to classify individuals. Depth alone did not explain Lake Trout diversity in Great Bear Lake; a distinct fifth deep-water morph was not found. Rather, Lake Trout diversity followed an ecological continuum, with some evidence for adaptation to local conditions in deep-water habitat. Overall, trout caught from deep-water showed low levels of genetic and phenotypic differentiation from shallow-water trout, and displayed higher lipid content (C:N ratio) and occupied a higher trophic level that suggested an potential increase of piscivory (including cannibalism) than the previously described four morphs. Why phenotypic divergence between shallow- and deep-water Lake Trout was low is unknown, especially when the potential for phenotypic variation should be high in deep and large Great Bear Lake. Given that variation in complexity of freshwater environments has dramatic consequences for divergence, variation in the complexity in Great Bear Lake (i.e., shallow being more complex than deep), may explain the observed dichotomy in the expression of intraspecific phenotypic diversity between shallow- vs. deep-water habitats. The ambiguity surrounding mechanisms driving divergence of Lake Trout in Great Bear Lake should be seen as reflective of the highly variable nature of ecological opportunity and divergent natural selection itself.

Northwest Territories↗