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USGS2018

Spatiotemporal analysis of Landsat-8 and Sentinel-2 data to support monitoring of dryland ecosystems

Drylands are the habitat and source of livelihood for about two fifths of the world’s population and are highly susceptible to climate and anthropogenic change. To understand the vulnerability of drylands to changing environmental conditions, land managers need to effectively monitor rates of past change and remote sensing offers a cost-effective means to assess and manage these vast landscapes. Here, we present a novel approach to accurately monitor land-surface phenology in drylands of the Western United States using a regression tree modeling framework that combined information collected by the Operational Land Imager (OLI) onboard Landsat 8 and the Multispectral Instrument (MSI) onboard Sentinel-2. This highly-automatable approach allowed us to precisely characterize seasonal variations in spectral vegetation indices with substantial agreement between observed and predicted values (R 2 = 0.98; Mean Absolute Error = 0.01). Derived phenology curves agreed with independent eMODIS phenological signatures of major land cover types (average r -value = 0.86), cheatgrass cover (average r -value = 0.96), and growing season proxies for vegetation productivity (R 2 = 0.88), although a systematic bias towards earlier maturity and senescence indicates enhanced monitoring capabilities associated with the use of harmonized Landsat-8 Sentinel-2 data. Overall, our results demonstrate that observations made by the MSI and OLI can be used in conjunction to accurately characterize land-surface phenology and exclusion of imagery from either sensor drastically reduces our ability to monitor dryland environments. Given the declines in MODIS performance and forthcoming decommission with no equivalent replacement planned, data fusion approaches that integrate observations from multispectral sensors will be needed to effectively monitor dryland ecosystems. While the synthetic image stacks are expected to be locally useful, the technical approach can serve a wide variety of applications such as invasive species and drought monitoring, habitat mapping, production of phenology metrics, and land-cover change modeling.

Remote Sensing↗

USGS2020

Managing climate refugia for freshwater fishes under an expanding human footprint

Within the context of climate adaptation, the concept of climate refugia has emerged as a framework for addressing future threats to freshwater fish populations. We evaluated recent climate‐refugia management associated with water use and landscape modification by comparing efforts in the US states of Oregon and Massachusetts, for which there are contrasting resource use patterns. Using these examples, we discuss tools and principles that can be applied more broadly. Although many early efforts to identify climate refugia have focused on water temperature, substantial gains in evaluating other factors and processes regulating climate refugia (eg stream flow, groundwater availability) are facilitating refined mapping of refugia and assessment of their ecological value. Major challenges remain for incorporating climate refugia into water‐quality standards, evaluating trade‐offs among policy options, addressing multiple species’ needs, and planning for uncertainty. However, with a procedurally transparent and conceptually sound framework to build upon, recent efforts have revealed a promising path forward.

Massachusetts, Oregon↗

USGS1975

Effects of environmental pollutants on Connecticut and Maryland ospreys

Osprey ( Pandion haliaetus) eggs were exchanged between Connecticut and Maryland osprey nests in 1968 and 1969 to test the hypothesis that the decline in reproductive success of Connecticut ospreys was caused by something within the external environment of the eggs. Incubation of 30 Connecticut osprey eggs by Maryland ospreys did not improve the hatching rate. Forty-five Maryland osprey eggs incubated by Connecticut ospreys hatched at their normal rate. The results of the egg exchanges and associated observations indicated that the most probable cause of the poor reproduction of Connecticut ospreys ,was related to contamination of the birds and their eggs. Residues of DDT and its metabolites, dieldrin, and PCBs were generally higher in fish from Connecticut than from Maryland. During 1968-69, average residues (on a nest basis) in osprey eggs from Maryland were: p,p'-DDE, 2.4 ppm; dieldrin, 0.25 ppm; PCB, 2.6 ppm. Average residues in eggs from Connecticut for the same period were: p,p'DDE, 8.9 ppm; dieldrin, 0.61 ppm; PCB, 15 ppm. There were no major changes in residue content of Connecticut eggs collected in 1964 compared with those collected in 1968-B9. One Connecticut osprey had a concentration of dieldrin in its brain which was in the lethal range. The average shell thickness of recently collected osprey eggs from Connecticut had declined 18 percent, and those from Maryland had declined 10 percent from pre-1947 norms. Dieldrin, DDE, and PCB are three environmental pollutants that have most likely been important factors in the greatly reduced reproductive success and rapid population decline of Connecticut ospreys.

Connecticut, Maryland↗

USGS1994

Estimated discharge of treated wastewater in Florida, 1990

According to the Florida Department of Environ- mental Protection, 5,100 wastewater treatment systems were in operation during 1990. Of this total, 72 percent were domestic wastewater facilities and 28 percent were industrial waste- water facilities. The number of wastewater systems inventoried for 1990 was 1,062 (systems that treated and discharged more than 0.01 Mgal/d or had a plant capacity of greater than 0.04 Mgal/d. Based on this inventory, the estimated discharge of treated wastewater in Florida during 1990 totaled 1,638 million gallons per day. Approxi- mately 65 percent of this water was discharged to surface water during 1990 and the remaining 35 percent was discharged to ground water. Discharge to surface water includes effluent outfalls into the Atlantic Ocean (32 percent), while the re- maining (68 percent) is discharged into the Gulf of Mexico, bays, rivers, wetlands, and other surface water bodies throughout Florida. Discharge to ground-water includes treated effluent outfalls to land application systems (reuse systems and spray fields), drain fields, percolation ponds (51 percent), and to injection wells (49 percent). An estimated 322 million gallons per day of the treated domestic and industrial wastewater was reused during 1990. Discharge of treated domestic wastewater from the 994 systems inventoried in Florida during 1990 totaled 1,353 million gallons per day and served an estimated 8.58 million people (66 percent of the population of Florida in 1990). The remaining 34 percent of the popu- lation (4.36 million) are served by the 2,700 smaller domestic wastewater systems or have individual septic tanks. In 1990, there were 1.56 million septic tanks in Florida. Discharge of industrial wastewater was inventoried for 68 systems in 1990 and totaled 285 million gallons per day. Discharge of domestic wastewater in- creased more than 20 percent and industrial wastewater discharge increased 5 percent from 1985 to 1990. (USGS)

Open-File Report↗

USGS2021

‘Unscrambling’ the drivers of egg production in Agassiz’s desert tortoise: Climate and individual attributes predict reproductive output

ABSTRACT: The ‘bet hedging’ life history strategy of long-lived iteroparous species reduces short-term reproductive output to minimize the risk of reproductive failure over a lifetime. For desert-dwelling ectotherms living in variable and unpredictable environments, reproductive output is further influenced by precipitation and temperature via effects on food availability and limits on activity. We assembled multiple (n = 12) data sets on egg production for the threatened Agassiz’s desert tortoise Gopherus agassizii across its range and used these data to build a range-wide predictive model of annual reproductive output as a function of annual weather variation and individual-level attributes (body size and prior-year reproductive status). Climate variables were more robust predictors of reproductive output than individual-level attributes, with overall reproductive output positively related to prior-year precipitation and an earlier start to the spring activity season, and negatively related to spring temperature extremes (monthly temperature range in March-April). Reproductive output was highest for individuals with larger body sizes that reproduced in the previous year. Expected annual reproductive output from 1990-2018 varied from 2-5 to 6-12 eggs female -1 yr -1 , with a weak decline in expected reproductive output over this time (p = 0.02). Climate-driven environmental variation in expected reproductive output was highly correlated across all 5 Recovery Units for this species (Pearson’s r > 0.9). Overall, our model suggests that climate change could strongly impact the reproductive output of Agassiz’s desert tortoise, and could have a negative population-level effect if precipitation is significantly reduced across the species’ range as predicted under some climate models.

California, Arizona, Nevada, Utah↗

USGS1993

Surface-water hydrology and quality, and macroinvertebrate and smallmouth bass populations in four stream basins in southwestern Wisconsin, 1987-90

Data on streamflow, water quality, and macroinvertebrate and smallmouth bass (microptercus dolomieni) populations were collected from July 1987 through September 1990, in four streams in southwestern Wisconsin to determine the effect of surface-water hydrology and quality on populations of macroinvertebrates and smallmouth bass. The study was a joint project of the U.S. Geological Survey and the Wisconsin Department of Natural Resources. Drought conditions greatly affected streamflows in southwestern Wisconsin throughout much of the period of study. Precipitation in all four basins in 1988 and 1989 was 9.91 to12.41 inches less than 1951-80 normal precipitation of 32.88 inches. The lowest annual mean discharge was recorded in water year 1988 at all of the streamflow- gaging stations except at Rattlesnake Creek, where annual mean discharge was lowest in water year 1990. Overland-flow runoff during the reproductive period of smallmouth bass (mid-May to mid-July) was 0.02 inch in 1988 at the Sinsinawa River and Rattlesnake Creek. Overland-flow runoff in the Little Platte River and the Livingston Branch of the Pecatonica River also was low in 1988 (0.03 inch and 0.04 inch, respectively) during the reproductive period of smallmouth bass. The trend of low overland-flow runoff continued in 1989; in water year 1990, however, overland-flow runoff during the reproductive period of smallmouth bass was 1.38 inches at Livingston Branch of the Pecatonica River and 0.22 inch at Rattlesnake Creek. Turbidity ranged from 1.5 nephelometric turbidity units at Rattlesnake Creek to 3,700 nephelometric turbidity units at the Sinsinawa River. Suspended-solid concentrations ranged from 2 milligrams per liter at Rattlesnake Creek to a maximum 24,300 milligrams per liter at the Livingston Branch of the Pecatonica River. The high turbidities and suspended-solid concentrations, which occurred during storms, did not last for long periods of time and are not thought to have been harmful to the biota of the rivers. Un-ionized ammonia concentrations exceeded the State of Wisconsin, Department of Natural Resources' standard of 0.04 milligram per liter for warmwater streams at all four of the streams. The maximum concentration of un-ionized ammonia measured was 0.10 milligram per liter at Rattlesnake Creek and there was no discernible effects on smallmouth bass or macroinvertebrates. Dissolved-oxygen concentrations at all four study streams occasionally decreased to below or near the concentration of 1 milligram per liter considered necessary to sustain life of smallmouth bass. Two fish kills were documented as the result of low dissolved-oxygen concentrations. All of these episodes of low dissolved-oxygen concentrations occurred during or just after rainstorms and subsequent increasing streamflows. Samples of water-sediment mixture and bottom material were analyzed for pesticides commonly used in the basins. Samples from all of the stations had concentrations of herbicides that exceeded the analytical reporting limit. Water-sediment samples at the Sinsinawa River had the highest herbicide concentration. The concentration of metolachlor was the highest of the herbicides-- 110 micrograms per liter; concentrations of atrazine and cyanazine were next highest at 97 and 84 micrograms per liter, respectively. All of the water-sediment mixture samples had insecticide concentrations below the analytical reporting limit, with the exception of carbofuran. One water-sediment mixture sample collected at the Little Platte River had a carbofuran concentration of 0.44 microgram per liter. No pesticides were detected in the bottom-material samples collected at the four study streams. Richness of macroinvertebrate taxa did not differ substantially among the four streams during the study, but the abundances of several taxa differed significantly among streams. Livingston Branch of the Pecatonica River had comparatively few midges but many caddisflies, whereas Rattlesnake Creek had many non-insect taxa and relatively few caddisflies. The Little Platte River had consistently high numbers of caddisflies, mayflies, and riffle beetles. Macroinvertebrate-community composition, as measured by Bray-Curtis dissimilarity coefficients, varied considerably over time within and among the streams. The macroinvertebrate community composition of the Little Platte River changed very little during the winter of 1987-88 as compared to the other streams, but the community composition of the Livingston Branch of the Pecatonica River changed substantially. The communities of Rattlesnake Creek and Livingston Branch of the Pecatonica River became more similar to the community of the Little Platte River from fall 1987 through fall 1988, whereas the community in the Sinsinawa River remained distinct. Water quality, as estimated by biotic-index values, generally was better in the Little Platte River than in the other streams from fall 1987 through fall 1988. However, water quality appeared to have deteriorated (biotic-index values increased) in the Little Platte River during the winter of 1988-89. Water quality in the Livingston Branch of the Pecatonica River also deteriorated during the same period. The drought of 1988-89 and accompanying decrease in frequency of storms contributed to an uncharacteristically stable environment for macroinvertebrate development in most streams. Total taxa richness increased in three of the four streams. Total taxa richness did not increase in the Little Platte River, possibly because of moderate flooding that occurred prior to the spring 1989 sampling period or, more likely, because of changes in dissolved-oxygen concentrations. Although dissolved-oxygen concentrations were fairly similar in all streams, dissolved-oxygen concentrations were lower in 1989 in the Little Platte River than in other streams. The observed increase in biotic-index values in the Little Platte River during the spring of 1989 supports a decline in water quality. Smallmouth bass reproduction was related to precipitation and streamflow during the critical mid-May to mid-July reproductive period. Reproductive success was good (38-297 Age 0 smallmouth bass per acre) in 1988 and 1989 and poor (0-3 Age 0 smallmouth bass per acre) in 1987 and 1990. This pattern corresponded with total precipitation of less than 7 inches in May and June in 1988 and 1989 and greater than 7 inches in 1989 and 1990. In years when runoff exceeded 0.10 inch, only three or fewer Age 0 (smallmouth bass less than 1 year old) smallmouth bass per acre were caught in late summer to fall sampling surveys. In contrast, when overland runoff was less than 0.10 inch, 32 to 297 Age 0 smallmouth bass per acre were found in late summer or fall. The numbers of Age 0 smallmouth bass per acre were significantly different from each other at the 1 -percent probability level (p=0.0001). Smallmouth bass reproductive success indicated that smallmouth bass in these streams were extremely vulnerable to the amount of runoff during the early stage of their life. Low concentrations of dissolved oxygen constituted the most detrimental water-quality problem affecting smallmouth bass populations. Dissolved-oxygen concentrations were occasionally less than 3 milligrams per liter, a dissolved-oxygen concentration that may be detrimental to early-life stages of smallmouth bass in the streams; however, smallmouth bass were apparently able to withstand these low dissolved-oxygen concentrations and seem to have survived in some situations when dissolved-oxygen concentration decreased to1 milligram per liter.

Wisconsin↗

USGS2019

Mismatches between breeding phenology and resource abundance of resident alpine ptarmigan negatively affect chick survival

1. Phenological mismatches – defined here as the difference in reproductive timing of an individual relative to the availability of its food resources – occur in many avian species. Mistiming breeding activities in environments with constrained breeding windows may have severe fitness costs due to reduced opportunities for repeated breeding attempts. Therefore, species occurring in alpine environments may be particularly vulnerable. 2. We studied fitness consequences of timing of breeding in an alpine-endemic species, the white-tailed ptarmigan ( Lagopus leucura ), to investigate its influence on chick survival. We estimated phenological mismatch by measuring plant and arthropods used by ptarmigan in relation to their timing of breeding. 3. We monitored 120 nests and 67 broods over a three-year period (2013–2015) at three alpine study sites in the Rocky Mountains of Colorado. During this same period we actively monitored food resource abundance in brood-use areas to develop year and site specific resource phenology curves. We developed several mismatch indices from these curves that were then fit as covariates in mark-recapture chick survival models. 4. A correlation analysis between seasonal changes in arthropod and food plant abundance indicated that a normalized difference vegetation index (NDVI) was likely the best predictor for food available to hens and chicks. A survival model that included an interaction between NDVI mismatch and chick age received strong support and indicated young chicks were more susceptible to mismatch than older chicks. 5. We provide evidence that individual females of a resident alpine species can be negatively affected by phenological mismatch. Our study focused on individual females and did not examine if phenological mismatch was present at the population level. Future work in animal populations occurring in mountain systems focusing on a combination of both individual- and population- level metrics of mismatch will be beneficial.

Ecology and Evolution↗

USGS2021

Pilot-scale expanded assessment of inorganic and organic tapwater exposures and predicted effects in Puerto Rico, USA

A pilot-scale expanded target assessment of mixtures of inorganic and organic contaminants in point-of-consumption drinking water (tapwater, TW) was conducted in Puerto Rico (PR) to continue to inform TW exposures and corresponding estimations of cumulative human-health risks across the US. In August 2018, a spatial synoptic pilot assessment of than 524 organic, 37 inorganic, and select microbiological contaminant indicators was conducted in 14 locations (7 home; 7 commercial) across PR. A follow-up 3-day temporal assessment of TW variability was conducted in December 2018 at two of the synoptic locations (1 home, 1 commercial) and included daily pre- and post-flush samples. Concentrations of regulated and unregulated TW contaminants were used to calculate cumulative in vitro bioactivity ratios and Hazard Indices (HI) based on existing human-health benchmarks. Synoptic results confirmed that human exposures to inorganic and organic contaminant mixtures, which are rarely monitored together in drinking water at the point of consumption, occurred across PR and consisted of elevated concentrations of inorganic contaminants (e.g., lead, copper), disinfection byproducts (DBP), and to a lesser extent per/polyfluoroalkyl substances (PFAS) and phthalates. Exceedances of human-health benchmarks in every synoptic TW sample support further investigation of the potential cumulative risk to vulnerable populations in PR and emphasize the importance of continued broad characterization of drinking-water exposures at the tap with analytical capabilities that better represent the complexity of both inorganic and organic contaminant mixtures known to occur in ambient source waters. Such health-based monitoring data are essential to support public engagement in source water sustainability and treatment and to inform consumer point-of-use treatment decision making in PR and throughout the US.

Puerto Rico↗

USGS2018

Before the storm: Antecedent conditions as regulators of hydrologic and biogeochemical response to extreme climate events

While the influence of antecedent conditions on watershed function is widely recognized under typical hydrologic regimes, gaps remain in the context of extreme climate events (ECEs). ECEs are those events that far exceed seasonal norms of intensity, duration, or impact upon the physical environment or ecosystem. In this synthesis, we discuss the role of source availability and hydrologic connectivity on antecedent conditions and propose a conceptual framework to characterize system response to ECEs at the watershed scale. We present four case studies in detail that span a range of types of antecedent conditions and type of ECE to highlight important controls and feedbacks. Because ECEs have the potential to export large amounts of water and materials, their occurrence in sequence can disproportionately amplify the response. In fact, multiple events may not be considered extreme in isolation, but when they occur in close sequence they may lead to extreme responses in terms of both supply and transport capacity. Therefore, to advance our understanding of these complexities, we need continued development of a mechanistic understanding of how antecedent conditions set the stage for ECE response across multiple regions and climates, particularly since monitoring of these rare events is costly and difficult to obtain. Through focused monitoring of critical ecosystems during rare events we will also be able to extend and validate modeling studies. Cross-regional comparisons are also needed to define characteristics of resilient systems. These monitoring, modeling, and synthesis efforts are more critical than ever in light of changing climate regimes, intensification of human modifications of the landscape, and the disproportionate impact of ECEs in highly populated regions.

Biogeochemistry↗

USGS2025

Understanding the evolution of scoria cone morphology using multivariate models

Scoria cones are the most abundant type of volcano in the Solar System. They occur in every tectonic setting and often overlap with human populations, yet our ability to provide complete geochronology within volcanic fields remains limited. Appropriate geochronology underpins the reconstruction of size-frequency distribution and is a key input for robust volcanic hazard assessment. Morphometric data have long been used to estimate relative ages of scoria cones; however, they have only shown promise at single volcanic fields and simple cones with homogenous pyroclastics. Here, we present a new global inventory of dated scoria cones ( n = 572) from 71 volcanic fields formed under diverse magmatic, tectonic and climatic regimes, and build data-driven age models for dating scoria cones using easily accessible morphometric, reflectance and climatic variables. Our models suggest chemical composition of ascending magma may influence the initial scoria cone morphology which is then gradually modified by erosion over time.

Communications Earth & Environment↗

USGS2021

Informing future condition scenario planning for habitat specialists of the imperiled pine rockland ecosystem of South Florida

This project evaluated habitat conditions for two species found in the imperiled pine rockland ecosystem—the Rim Rock Crowned Snake ( Tantilla oolitica ) and the Key Ring-Necked Snake ( Diadophis punctatus acricus ). The Rim Rock Crowned Snake historically occurred in eastern Miami-Dade County (hereafter, mainland) as well as throughout the Florida Keys, whereas the Key Ring-Necked Snake occurs only in lower Florida Keys (Enge et al. 2004; Mays and Enge 2016). Both species are very elusive, small (< 20 cm in length) and primarily fossorial. Pine rockland habitat is rapidly disappearing in South Florida, with < 3 percent of its original extent remaining. Saltwater intrusion from hurricanes and sea-level rise (SLR), and human development pose the greatest threats to the longevity of this ecosystem which, in turn, places species that are endemic to this unique habitat at risk of extinction. The Rim Rock Crowned Snake and the Key Ringed-Necked Snake are being considered for listing by the U.S. Fish and Wildlife Service (USFWS). To aid the agency’s decision, it must be able to forecast species’ responses to potential future environmental conditions, as well as to different conservation and management actions. Yet, the information needed to complete these forecasts—such as population trends, life history traits, habitat use, and future land use and climate conditions—is often lacking for most rare species. This is especially problematic for assessments of species resiliency to changes in climate and land use. When these types of data are lacking, information on habitat quality can be used to help determine how a species will respond to change. First, this project gathered current and historical records for both species from various sources such as museum specimens, inventories, and other personal account. Then, we identified potential future changes in habitat that could result from different management actions, such as habitat acquisition or restoration, and environmental conditions, such as changes in the frequency and intensity of tropical storms and rates of SLR. Researchers then explored the potential impacts of these habitat condition changes on the Rim Rock Crowned Snake and Key Ring-Necked Snake. This information can be used by the USFWS to help make decisions about the need to protect these species under the Endangered Species Act and could inform the conservation, management, and recovery of other at-risk species found in the pine rockland ecosystem. This work supports the Secretary of Interior’s priority to create a conservation stewardship legacy by using science to identify best practices to manage land and water resource and adapt to changes in the environment.

Florida↗

USGS2012

Using a non-physical behavioural barrier to alter migration routing of juvenile Chinook salmon in the Sacramento–San Joaquin River Delta

Anthropogenic alterations to river systems, such as irrigation and hydroelectric development, can negatively affect fish populations by reducing survival when fish are routed through potentially dangerous locations. Non-physical barriers using behavioural stimuli are one means of guiding fish away from such locations without obstructing water flow. In the Sacramento–San Joaquin River Delta, we evaluated a bio-acoustic fish fence (BAFF) composed of strobe lights, sound and a bubble curtain, which was intended to divert juvenile Chinook salmon ( Oncorhynchus tshawytscha ) away from Georgiana Slough, a low-survival migration route that branches off the Sacramento River. To quantify fish response to the BAFF, we estimated individual entrainment probabilities from two-dimensional movement paths of juvenile salmon implanted with acoustic transmitters. Overall, 7.7% of the fish were entrained into Georgiana Slough when the BAFF was on, and 22.3% were entrained when the BAFF was off, but a number of other factors influenced the performance of the BAFF. The effectiveness of the BAFF declined with increasing river discharge, likely because increased water velocities reduced the ability of fish to avoid being swept across the BAFF into Georgiana Slough. The BAFF reduced entrainment probability by up to 40 percentage points near the critical streakline, which defined the streamwise division of flow vectors entering each channel. However, the effect of the BAFF declined moving in either direction away from the critical streakline. Our study shows how fish behaviour and the environment interacted to influence the performance of a non-physical behavioural barrier in an applied setting.

California↗

USGS2017

Recruitment phenology and pelagic larval duration in Caribbean amphidromous fishes

Amphidromous fishes are major components of oceanic tropical island stream ecosystems, such as those of the Caribbean island, Puerto Rico. Fishes with this life history face threats related to the requirement for connectivity between freshwater and marine environments during early life stages. Pelagic larval duration and recruitment phenology are 2 early life-history processes that are crucial for the biology, ecology, conservation, and management of amphidromous fishes. However, these processes are understudied in the Caribbean in general and have never been quantified in Puerto Rico. We quantified recruit abundance, recruitment phenology, and pelagic larval duration of several Caribbean amphidromous fish species in multiple rivers in Puerto Rico and explored the effects of environmental variables on recruit abundances. Two fish taxa—sirajo goby ( Sicydium spp.) and River Goby ( Awaous banana )—were exceptionally abundant as postlarvae and recruited to Caribbean rivers in pulsed migration episodes that were periodic at annual and lunar scales. Sirajo goby and River Goby recruit abundances varied among rivers, were greater at sunrise than at sunset, and were positively related to river discharge. The pelagic larval duration of 4 fish taxa ranged from a minimum of 28 d to a maximum of 103 d with means between 43 ± 7 d (SD) and 65 ± 11 d. We identified the last-quarter moon phase during the months of June through January as periods of maximum amphidromous fish recruitment to freshwater streams. The results and conclusions of our study can be applied to identify critical times to maintain river–ocean connectivity and stream flow for the benefit of the amphidromous fish population dynamics, stream ecology, and natural resources of the Caribbean.

Puerto Rico↗

USGS2024

Spatiotemporal patterns in habitat use of natal and non-natal adult Atlantic sturgeon in two spawning rivers

Background Monitoring movement across an organism’s ontogeny is often challenging, particularly for long-lived or wide-ranging species. When empirical data are unavailable, general knowledge about species’ ecology may be used to make assumptions about habitat use across space or time. However, inferences about habitat use based on population-level ecology may overlook important eco-evolutionary contributions from individuals with heterogenous ethologies and could diminish the efficacy of conservation and management. Methods We analyzed over a decade of acoustic telemetry data to understand individual differences in habitat use of federally endangered adult Atlantic sturgeon ( Acipenser o. oxyrinchus ) in the Delaware and Hudson rivers during spawning season. In particular, we sought to understand whether sex or natal origin could predict patterns in habitat use, as there is a long-held assumption that adult Atlantic sturgeon seldom stray into non-natal rivers. Results In both rivers, migration timing, spawning habitat occupancy, and maximum upstream migration distance were similar between natal and non-natal individuals. While non-natal individuals represented only 13% of fish detected in the Hudson River, nearly half of all tagged fish detected in the Delaware River were non-natal and generally occupied freshwater habitats longer than natal individuals. In both systems males had more heterogenous patterns of habitat use and longer duration of occupancy than did females. Conclusions This study demonstrates the importance of non-natal rivers for fulfilling ontogenetic habitat requirements in Atlantic sturgeon. Our results may also highlight an opportunity to improve conservation and management by extending habitat designations to account for more heterogenous patterns in individual habitat use in non-natal freshwater environments.

Delaware↗

USGS2015

Prevalence of toxin-producing Clostridium botulinum associated with the macroalga Cladophora in three Great Lakes: Growth and management

The reemergence of avian botulism caused by Clostridium botulinum type E has been observed across the Great Lakes in recent years. Evidence suggests an association between the nuisance algae, Cladophora spp., and C. botulinum in nearshore areas of the Great Lakes. However, the nature of the association between Cladophora and C. botulinum is not fully understood due, in part, to the complex food web interactions in this disease etiology. In this study, we extensively evaluated their association by quantitatively examining population size and serotypes of C. botulinum in algal mats collected from wide geographic areas in lakes Michigan, Ontario, and Erie in 2011–2012 and comparing them with frequencies in other matrices such as sand and water. A high prevalence (96%) of C. botulinum type E was observed in Cladophora mats collected from shorelines of the Great Lakes in 2012. Among the algae samples containing detectable C. botulinum , the population size of C. Botulinum type E was 10 0 –10 4 MPN/g dried algae, which was much greater (up to 10 3 fold) than that found in sand or the water column, indicating that Cladophora mats are sources of this pathogen. Mouse toxinantitoxin bioassays confirmed that the putative C. botulinum belonged to the type E serotype. Steam treatment was effective in reducing or eliminating C. botulinum type E viable cells in Cladophora mats, thereby breaking the potential transmission route of toxin up to the food chain. Consequently, our data suggest that steam treatment incorporated with a beach cleaning machine may be an effective treatment of Cladophora -borne C. botulinum and may reduce bird mortality and human health risks.

Lake Erie, Lake Michigan, Lake Ontario↗

USGS2024

Reduced freshwater mussel juvenile production as a result of agricultural and urban contaminant mixture exposures

Freshwater mussels provide invaluable ecological services but are threatened by habitat alteration, poor water quality, invasive species, climate change, and contaminants, including contaminants of emerging concern (CECs). Contaminants of emerging concerns are well documented in aquatic environments, including the Great Lakes Basin, but limited information is available on how environmentally relevant mixtures affect freshwater mussel biology throughout their varied life stages. Our main goal was to assess mussels' reproductive output in response to exposure to agricultural and urban CEC mixtures during glochidial development through juvenile transformation and excystment focusing on how exposure duration and treatment affect: (1) the number of glochidia prematurely released by brooding females, (2) glochidial transformation through host-fish excystment, and (3) the number of fully metamorphosed juveniles able to continue the lifecycle. Mussels and host fish were exposed to either a control water (CW), control ethanol (CE), agriculture CEC mixture (AM), or urban CEC mixture (UM) for 40 and 100 days. We found no effect from treatment or exposure duration on the number of glochidia prematurely released. Fewer partially and fully metamorphosed AM juveniles were observed during the 100-day exposure, compared with the 40-day. During the 40-day exposure, CW produced more fully metamorphosed individuals compared with CE and UM, but during the 100-day exposure AM produced more fully metamorphosed individuals compared with the CW. There was reduction in fully metamorphosed juveniles compared with partially metamorphosed for CE and UM during the 40-day exposure, as well as in the CW during the 100-day exposure. These results will be important for understanding how mussel populations are affected by CEC exposure. The experiments also yielded many insights for laboratory toxicology exposure studies.

Environmental Toxicology and Chemistry↗

USGS2020

Terrestrial and semi-aquatic scavengers on invasive Pacific pink salmon (Oncorhynchus gorbuscha) carcasses in a riparian ecosystem in northern Norway.

Pacific pink salmon ( Oncorhynchus gorbuscha ) invasions, thought to originate from populations introduced and established in Russia, occurred along the Norwegian coast in 2017 and 2019. Despite several thousand pink salmon entering and establishing in northern Norwegian rivers, current understanding of the ecological effect of the species in northern Europe is limited. Scavengers feeding on pacific salmon carcasses are important vectors for the transport of marine derived energy and nutrients to terrestrial ecosystems in the Pacific Northwest, North America, where the salmon naturally occur. However the role of terrestrial and aquatic scavengers in the consumption and removal of pink salmon beyond the salmon’s native range is unknown. This study has identified terrestrial and sub-aquatic vertebrate scavengers on pink salmon carcasses in a sub-arctic river in northern Norway. Avian scavengers filmed by a camera placed near sites baited with pink salmon carcasses included the Eurasian magpie ( Pica pica ), hooded crow ( Corvus cornix ), common raven ( Corvus corax ), the European herring gull ( Larus argentatus ), redwing ( Turdus iliacus ) and goosander ( Mergus merganser ). However, the largest carcass weight was removed by red foxes ( Vulpes vulpes ). Carcasses entering Vesterelv River in 2019 were estimated to provide energy and nutrients to the river ecosystem an order of magnitude lower than in the Pacific Northwest. This study provides some of the first information in northern Europe on the mechanisms and quantification of energy and nutrient transfer from the ocean to riparian environments via introduced Pacific pink salmon. Results help to begin to determine the ecological effect of pink salmon and the development of appropriate management strategies.

Finnmark, Vesterelv↗

USGS2023

A nitrifier-enriched microbial community contributes to the degradation of environmental DNA

Environmental DNA (eDNA) surveys are a promising alternative to traditional monitoring of invasive species, rare species, and biodiversity. Detecting organism-specific eDNA reduces the need to collect physical specimens for population estimates, and the high sensitivity of eDNA assays may improve detection of rare or cryptic species. However, correlating estimated concentrations of eDNA with species abundance can be difficult due to the many abiotic and biotic factors that influence eDNA persistence and degradation. Here, we assessed the impact of a nitrifier-enriched microbial (NEM) community on the persistence and degradation of Hypophthalmichthys molitrix (silver carp) milt eDNA using experimental aquatic mesocosms and a quantitative PCR approach. The NEM community was cultured from combined sediment and water samples collected from a golf course pond in Columbia, Missouri (USA), and experiments were conducted in the dark at 22°C. We found that the NEM community transformed organic nitrogen from silver carp milt to measurable amounts of nitrate, both in the presence and absence of ammonia nitrogen. Additionally, regardless of ammonia availability, milt eDNA followed a one-phase exponential decay pattern after an initial 24-h plateau in the presence of the NEM community. However, milt eDNA had a shorter half-life (12.5 h) in the absence of exogenous ammonia compared to when ammonia was present (15 h). In sterile mesocosms, eDNA was stable during the 72-h experiment. Together, these results suggest that the presence of microorganisms is necessary for short-term degradation of eDNA. Furthermore, nitrifying microbial communities, which are ubiquitous in most soil and water environments, could limit eDNA persistence in the environment. Understanding the contributions of environmental microbial communities will allow more confidence in sampling design and eDNA result interpretations for biodiversity management applications.

Environmental DNA↗