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At least 1,495 records · Page 83Linked to original sources
USGS1998

Human influences on trophic cascades along rocky shores

A three-trophic-level interaction among American Black Oystercatchers ( Haematopus bachmani ), limpets ( Lottia spp.), and erect fleshy algae in rocky intertidal communities of central and southern California was documented via manipulative and “natural” experiments. Removal of the territorial limpet ( Lottia gigantea ) initially caused large increases in the percent cover of erect fleshy algae, followed by a more gradual increase in density of small limpets ( Lottia spp.) and a decline in algal cover. Algal cover increased following the removal of small limpets at the sites from which L. gigantea had been removed earlier, thus demonstrating that the large and small limpets had similar inhibitory effects on plant populations. A comparison of sites with and without oystercatchers showed that L. gigantea occupied substrate inclinations in proportion to their availability at sites where oystercatchers were rare, whereas the distribution of L. gigantea was skewed toward vertically inclined substrates where oystercatchers were common. Survival rates of limpets translocated to horizontal and vertical substrates were similar in sites lacking oystercatcher predation, but were much lower on horizontal substrates where oystercatchers were common. Our results are consistent with those from several prior studies in demonstrating that shorelines frequented by humans typically lack oystercatchers. Humans also exploit L. gigantea and reduce populations to low densities of small individuals. These findings may explain why the midlittoral zone of rocky intertidal communities in western North America are so often dominated by high population densities of small limpets.

Ecological Applications↗
USGS2025

Variation in soil organic carbon across a latitudinal chronosequence of mangrove poleward expansion

The critical carbon sink provided by coastal wetlands, known as blue carbon, can be affected by multiple aspects of climate change. One important example is warming-induced mangrove poleward expansion, which is shifting dominant plant cover across tropical–temperate transitional zones and altering ecosystem structure and function. We examined how mangrove expansion affects soil organic carbon (SOC) quantity and source, using measurements of SOC density and isotopic signatures (δ 13 C and δ 15 N) at 15 sites across Florida’s west coast (USA). The sampled sites represent examples of three expansion stages: a latitudinal chronosequence of mangrove expansion, spanning mature mangroves in the south, former ecotones at mid latitudes, and current ecotones in the north. Our analyses of soil core data indicate that mangrove expansion stage is a significant predictor of SOC density, δ 13 C, and δ 15 N, but not C:N ratio. Current ecotones exhibited significantly lower SOC density but higher δ 13 C, suggesting a greater contribution of preexisting C 4 salt marshes, while no difference was found between former ecotones and mature mangroves. SOC density, δ 13 C, and δ 15 N were found to vary with mangrove aboveground biomass, stage, and sedimentary setting along the latitudinal gradient. For all three mangrove expansion stages, SOC density decreased with depth, but δ 13 C showed no vertical trend, suggesting that mangroves contributed organic carbon to the entire 20-cm soil profile. The observed regional trend of SOC across mangrove expansion stages highlights the ecological impacts of warming-driven vegetation shifts in coastal wetlands, though further evidence is needed to determine the primary drivers and mechanisms, while also considering local and regional environmental factors.

Florida↗
USGS2022

Potential effects of energy development on environmental resources of the Williston Basin in Montana, North Dakota, and South Dakota—Species of conservation concern

The ecosystems of the Williston Basin provide direct and indirect benefits to society. These benefits include carbon sequestration, flood control, nutrient rich soils for agricultural productivity, and habitat for wildlife. This chapter’s main focus is on the effects of energy development on species that occupy the ecosystems in the Williston Basin. We compiled a list of documented species of conservation concern that are of most interest to Federal regulators and resource managers. Species of concern were either listed as endangered or threatened under the Endangered Species Act or listed by States as species of concern in Natural Heritage Program checklists or State Wildlife Action Plans. All told, we determined that 357 species of concern likely occupy the Williston Basin. These species represented seven different taxonomic groups: plants (native and nonnative), terrestrial invertebrates, birds, mammals, reptiles and amphibians, and fish and mussels. We reviewed the existing scientific information pertaining to potential effects of energy development on these taxonomic groups. Currently, little is known about the abundance and distribution of many of these species. But some information exists that may be useful in predicting the potential effects of energy development on certain taxonomic groups. Most of this information has been developed through scientific research focused on effects to mammal and bird populations. Effects to other taxonomic groups seems to be understudied. In general, it seems that disturbances and modifications associated with development have the potential to negatively affect a wide range of species; however, many studies produce uncertain results because they are not designed to compare populations before and after energy development takes place. Most of these studies also do not monitor resources over multiple years and thus cannot detect population trends. Likewise, there are few examples of landscape-scale assessments of the cumulative effects of energy development that could be used for species or habitat management purposes. We suggest that more research needs to be completed to measure potential effects to a broad range of species in multiple taxonomic groups. This may require also developing some understanding about the basic ecology of many of the species covered in this report. In concert with this more basic research, we also suggest that more comprehensive assessments of potential negative cumulative effects across the Williston Basin should be developed in an effort to guide more strategic management of biological resources.

Montana, North Dakota, South Dakota↗
USGS2003

Indirect facilitation of an anuran invasion by non-native fishes

Positive interactions among non-native species could greatly exacerbate the problem of invasions, but are poorly studied and our knowledge of their occurrence is mostly limited to plant-pollinator and dispersal interactions. We found that invasion of bullfrogs is facilitated by the presence of co-evolved non-native fish, which increase tadpole survival by reducing predatory macroinvertebrate densities. Native dragonfly nymphs in Oregon, USA caused zero survival of bullfrog tadpoles in a replicated field experiment unless a non-native sunfish was present to reduce dragonfly density. This pattern was also evident in pond surveys where the best predictors of bullfrog abundance were the presence of non-native fish and bathymetry. This is the first experimental evidence of facilitation between two non-native vertebrates and supports the invasional meltdown hypothesis. Such positive interactions among non-native species have the potential to disrupt ecosystems by amplifying invasions, and our study shows they can occur via indirect mechanisms.

Ecology Letters↗
USGS2025

Post-fire recovery of sagebrush-steppe communities is better explained by elevation than climate-derived indicators of resistance and resilience

More landscapes require restoration than can feasibly be treated, and so decision-support tools to prioritize areas for treatment are needed. Moreover, restoration is complicated by the threat of biological invasion in disturbed areas, and so indicators of ecosystem resistance to invasion and resilience to disturbance (hereafter R&R) are important candidate criteria for prioritizing sites for restoration. We asked how climate-based R&R indicators that differed in being either categorical or continuous compared in their ability to explain plant-community recovery after six wildfires that collectively encompassed >750,000 ha and 7803 plot-year observations in sagebrush steppe of the western USA. Unique associations of species that most frequently co-occurred were identified using structural topic modelling. Mixed effect random forests were used to identify the relative importance of various R&R indicators in explaining post-fire plant associations compared with weather, landscape characteristics and treatment history. Simple metrics (elevation, latitude, longitude and year of monitoring) were more informative predictors of post-fire recovery than climate-based R&R indicators. However, small differences in the abundances of perennial grass and especially annual grass associations were predicted by the spring modified Thornthwaite Moisture Index (difference between precipitation and potential evapotranspiration). Synthesis and applications : The convenience of categorical resistance and resilience indicators has led to their widespread adoption for large-scale planning of restoration. Our results reveal that none of the resistance and resilience indicators assessed effectively explained post-fire restoration better than elevation, although a simple continuous resistance and resilience indicator describing water balance performed better than categorical indicators for explaining small but critical differences in cheatgrass association abundances.

California, Idaho, Nevada, Oregon↗
USGS2009

When can efforts to control nuisance and invasive species backfire?

Population control through harvest has the potential to reduce the abundance of nuisance and invasive species. However, demographic structure and density-dependent processes can confound removal efforts and lead to undesirable consequences, such as overcompensation (an increase in abundance in response to harvest) and instability (population cycling or chaos). Recent empirical studies have demonstrated the potential for increased mortality (such as that caused by harvest) to lead to overcompensation and instability in plant, insect, and fish populations. We developed a general population model with juvenile and adult stages to help determine the conditions under which control harvest efforts can produce unintended outcomes. Analytical and simulation analyses of the model demonstrated that the potential for overcompensation as a result of harvest was significant for species with high fecundity, even when annual stage-specific survivorship values were fairly low. Population instability as a result of harvest occurred less frequently and was only possible with harvest strategies that targeted adults when both fecundity and adult survivorship were high. We considered these results in conjunction with current literature on nuisance and invasive species to propose general guidelines for assessing the risks associated with control harvest based on life history characteristics of target populations. Our results suggest that species with high per capita fecundity (over discrete breeding periods), short juvenile stages, and fairly constant survivorship rates are most likely to respond undesirably to harvest. It is difficult to determine the extent to which overcompensation and instability could occur during real-world removal efforts, and more empirical removal studies should be undertaken to evaluate population-level responses to control harvests. Nevertheless, our results identify key issues that have been seldom acknowledged and are potentially generic across taxa. ?? 2009 by the Ecological Society ot America.

Ecological Applications↗
USGS2020

Forage and habitat for pollinators in the northern Great Plains—Implications for U.S. Department of Agriculture conservation programs

Managed and wild pollinators are critical components of agricultural and natural systems. Despite the well-known value of insect pollinators to U.S. agriculture, Apis mellifera (Linnaeus, 1758; honey bees) and wild bees currently face numerous stressors that have resulted in declining health. These declines have engendered support for pollinator conservation efforts across all levels of government, private businesses, and nongovernmental organizations. In 2014, the U.S. Department of Agriculture (USDA) and the U.S. Geological Survey initiated an interagency agreement to evaluate honey bee forage across multiple States in the northern Great Plains and upper Midwest. The long-term goal of this study was to provide an empirical evaluation of floral resources used by honey bees, and the relative contribution of multiple land covers and USDA conservation programs to bee health and productivity. Our multi-State analysis of land-use change from 2006 to 2016 revealed loss of grassland and increases in corn and soybean area in North and South Dakota, representing a significant loss of bee-friendly land covers in areas that support the highest density of summer bee yards in the entire United States. Our landscape models demonstrate the importance of the Conservation Reserve Program in providing safe locations for beekeepers to keep honey bees during the summer and highlights how land use in the northern Great Plains has a lasting effect on the health of honey bee colonies during almond pollination the subsequent spring. Our multiseason, multi-State genetic analysis of honey bee-collected pollen revealed Melilotus spp., Asteraceae, Trifolium spp., Fabaceae, Sonchus arvensis , Symphyotrichum cordifolium , and Solidago spp. were the top taxa detected; Melilotus spp. represented 42 percent of all detected taxa. Symphyotrichum cordifolium , Solidago spp., and Grindelia spp. were the top native forbs detected in honey bee-collected pollen. We also conducted plant and bee surveys on private lands enrolled in the Conservation Reserve Program and Environmental Quality Incentives Program. In general, we found significant variability in floral resources and pollinator utilization across USDA programs and practices. On average, greater than 75 percent of honey bee flower observations on private lands enrolled in a USDA conservation program were on non-native forbs, whereas 33 percent of wild bee flower observations were on non-native forbs. Melilotus officinalis and Medicago sativa were the most visited by honey bees, wherease Medicago sativa and Helianthus maximiliani were the most visited by wild bees. Our analysis of nectar dearth periods in June and September for honey bees revealed that although Melilotus officinalis and Medicago sativa were highly visited, less common native forb species such as Ratibida columnifera , Agastache foeniculum , and Gaillardia aristata were preferred species. However, these preferred species were relatively rare on the landscape and are, therefore, unlikely to make up a sizable part of the honey bee diet. In addition to our empirical results, we also showcase how the U.S. Geological Survey Pollinator Library, a decision-support tool for natural resource managers, can be used to design cost-effective seeding mixes for pollinators. Collectively, the results of this research will assist USDA with maximizing the ecological impact and cost-effectiveness of their conservation programs on pollinators in the northern Great Plains.

Minnesota, North Dakota, South Dakota↗
USGS2016

Holocene vegetation and fire history of the mountains of northern Sicily (Italy)

Knowledge about vegetation and fire history of the mountains of Northern Sicily is scanty. We analysed five sites to fill this gap and used terrestrial plant macrofossils to establish robust radiocarbon chronologies. Palynological records from Gorgo Tondo, Gorgo Lungo, Marcato Cixé, Urgo Pietra Giordano and Gorgo Pollicino show that under natural or near natural conditions, deciduous forests ( Quercus pubescens , Q. cerris , Fraxinus ornus , Ulmus ), that included a substantial portion of evergreen broadleaved species ( Q. suber , Q. ilex , Hedera helix ), prevailed in the upper meso-mediterranean belt. Mesophilous deciduous and evergreen broadleaved trees ( Fagus sylvatica , Ilex aquifolium ) dominated in the natural or quasi-natural forests of the oro-mediterranean belt. Forests were repeatedly opened for agricultural purposes. Fire activity was closely associated with farming, providing evidence that burning was a primary land use tool since Neolithic times. Land use and fire activity intensified during the Early Neolithic at 5000 bc , at the onset of the Bronze Age at 2500 bc and at the onset of the Iron Age at 800 bc . Our data and previous studies suggest that the large majority of open land communities in Sicily, from the coastal lowlands to the mountain areas below the thorny-cushion Astragalus belt (ca. 1,800 m a.s.l.), would rapidly develop into forests if land use ceased. Mesophilous Fagus - Ilex forests developed under warm mid Holocene conditions and were resilient to the combined impacts of humans and climate. The past ecology suggests a resilience of these summer-drought adapted communities to climate warming of about 2 °C. Hence, they may be particularly suited to provide heat and drought-adapted Fagus sylvatica ecotypes for maintaining drought-sensitive Central European beech forests under global warming conditions.

Sicily↗
USGS2016

Testing the apparent resistance of three dominant plants to chronic drought on the Colorado Plateau

Many drylands, including the south-western United States, are projected to become more water-limited as these regions become warmer and drier with climate change. Such chronic drought may push individual species or plant functional types beyond key thresholds leading to reduced growth or even mortality. Indeed, recent observational and experimental evidence from the Colorado Plateau suggests that C 3 grasses are the most vulnerable to chronic drought, while C 4 grasses and C 3 shrubs appear to have greater resistance. The effects of chronic, or press-drought are predicted to begin at the physiological level and translate up to higher hierarchical levels. To date, the drought resistance of C 4 grasses and C 3 shrubs in this region has been only evaluated at the community level and thus we lack information on whether there are sensitivities to drought at lower hierarchical levels. In this study, we tested the apparent drought resistance of three dominant species ( Pleuraphis jamesii , a C 4 rhizomatous grass; Coleogyne ramosissima , a C 3 drought-deciduous shrub; and Ephedra viridis , a C 3 evergreen shrub) to an ongoing experimental press-drought (-35% precipitation) by comparing individual-level responses (ecophysiology and growth dynamics) to community-level responses (plant cover). For all three species, we observed consistent responses across all hierarchical levels: P. jamesii was sensitive to drought across all measured variables, while the shrubs C. ramosissima and E. viridis had little to no responses to the experimental press-drought at any given level. Synthesis . Our findings suggest that the apparent drought resistance at higher hierarchical levels, such as cover, may serve as good proxies for lower-level responses. Furthermore, it appears the shrubs are avoiding drought, possibly by utilizing moisture at deeper soil layers, while the grasses are limited to shallower layers and must endure the drought conditions. Give this differential sensitivity to drought, a future with less precipitation and higher temperatures may increase the dominance of shrubs on the Colorado Plateau, as grasses succumb to chronic water stress.

Utah↗
USGS1989

Terrain, vegetation, and landscape evolution of the R4D research site, Brooks Range Foothills, Alaska

Maps of the vegetation and terrain of a 22 km2 area centered on the Department of Energy (DOE) R4D (Response, Resistance, Resilience to and Recovery from Disturbance in Arctic Ecosystems) study site in the Southern Foothills Physiographic Province of Alaska were made using integrated geobotanical mapping procedures and a geographic-information system. Typical land forms and surface f orms include hillslope water tracks, Sagavanirktok-age till deposits, nonsorted stone stripes, and colluvial-basin deposits. Thirty-two plant communities are described; the dominant vegetation (51% of the mapped area) is moist tussock-sedge, dwarf-shrub tundra dominated by Eriophorum vaginatum or Carex bigelowii. Much of the spatial variation in the mapped geobotanical characters reflects different-aged glaciated surfaces. Shannon-Wienerin dices indicate that the more mature landscapes, represented by retransported hillslope deposits and basin colluvium, are less heterogeneous than newer landscapes such as surficial till deposits and floodplains. A typical toposequence on a mid-Pleistocene-age surface is discussed with respect to evolution of the landscape. Thick Sphagnum moss layers occur on lower hillslopes, and the patterns of moss-layer development, heat flux, active layer thickness, and ground-ice are seen as keys to developing thermokarst-susceptibility maps.

Alaska↗
USGS2026

Mercury cycling across a U.S. semi-arid mountain ecosystem elevation gradient

Mountains comprise ∼30% of the Earth's surface, but mercury (Hg) cycling in these regions remains understudied, particularly in the semi-arid western U.S. where strong climatic and ecological gradients in mountainous landscapes influence Hg deposition, retention, and bioaccumulation. In this study, we quantified growing season inputs, storage, and bioaccumulation of Hg along a ∼2,000 m elevation gradient in the Colorado Rocky Mountains, spanning the plains to the alpine. We measured Hg in atmospheric deposition, vegetation, soil, and 12-day-old chickadees. Accounting for percent canopy cover, open precipitation was the largest component of atmospheric deposition at all elevations, followed by throughfall and litterfall fluxes. Atmospheric Hg fluxes peaked at mid-elevations, likely due to cloud-cap dynamics and denser canopy cover. Total gaseous Hg and precipitation fluxes were highest at low elevations, likely reflecting local emissions and meteorological pooling. Surface soil Hg storage was more strongly predicted by organic matter content ( R 2 = 0.49; p < 0.01) and water retention ( R 2 = 0.45; p < 0.01) than by elevation ( R 2 = 0.21; p < 0.05). Alpine soils (66.3 ± 25.3 ng g −1 ) had significantly higher total Hg concentrations than lower elevations (<41.0 ± 12.7 ng g −1 ; p < 0.01), likely reflecting slower organic matter turnover. Soils on north-facing slopes also retained significantly higher pools of Hg in surface soils compared with south- and east-facing slopes. Vegetation Hg pools were greatest in the alpine region, likely due to long-lived plant species. Methylmercury (MeHg) concentrations in chickadee feathers peaked at mid-elevations (205 ± 155 ng g −1 ), corresponding to higher ecosystem Hg inputs via throughfall. Our results show that deposition, canopy cover, and meteorological conditions—not elevation alone—predict Hg retention and bioaccumulation.

Colorado↗
USGS2007

The Charles River, Eastern Massachusetts: Scientific Information in Support of Environmental Restoration

Human activity has profoundly altered the Charles River and its watershed over the past 375 years. Restoration of environmental quality in the watershed has become a high priority for private- and public-sector organizations across the region. The U.S. Environmental Protection Agency and the Massachusetts Executive Office of Environmental Affairs worked together to coordinate the efforts of the various organizations. One result of this initiative has been a series of scientific studies that provide critical information concerning some of the major hydrologic and ecological concerns in the watershed. These studies have focused upon: * Streamflows - Limited aquifer storage, growing water demands, and the spread of impervious surfaces are some of the factors exacerbating low summer streamflows in headwater areas of the watershed. Coordinated management of withdrawals, wastewater returns, and stormwater runoff could substantially increase low streamflows in the summer. Innovative approaches to flood control, including preservation of upstream wetland storage capacity and construction of a specially designed dam at the river mouth, have greatly reduced flooding in the lower part of the watershed in recent decades. * Water quality - Since the mid-1990s, the bacterial quality of the Charles River has improved markedly, because discharges from combined sewer overflows and the number of illicit sewer connections to municipal storm drains have been reduced. Improved management of stormwater runoff will likely be required, however, for full attainment of State and Federal water-quality standards. Phosphorus inputs from a variety of sources remain an important water-quality problem. * Fish communities and habitat quality - The Charles River watershed supports a varied fish community of about 20 resident and migratory species. Habitat conditions for fish and other aquatic species have improved in many parts of the river system in recent years. However, serious challenges remain, including the control of nutrients, algae, and invasive plants, mitigation of dam impacts, addressing remaining sources of bacteria to the river, and remediation of contaminated bottom habitat and the nontidal salt wedge in the lower river.

General Information Product↗
USGS2024

Nitrogen fixation and fertilization have similar effects on biomass allocation in nitrogen-fixing plants

Plants adjust their allocation to different organs based on nutrient supply. In some plant species, symbioses with nitrogen-fixing bacteria that live in root nodules provide an alternate pathway for nitrogen acquisition. Does access to nitrogen-fixing bacteria modify plants' biomass allocation? We hypothesized that access to nitrogen-fixing bacteria would have the same effect on allocation to aboveground versus belowground tissues as access to plentiful soil nitrogen. To test this hypothesis and related hypotheses about allocation to stems versus leaves and roots versus nodules, we conducted experiments with 15 species of nitrogen-fixing plants in two separate greenhouses. In each, we grew seedlings with and without access to symbiotic bacteria across a wide gradient of soil nitrogen supply. As is common, uninoculated plants allocated relatively less biomass belowground when they had more soil nitrogen. As we hypothesized, nitrogen fixation had a similar effect as the highest level of fertilization on allocation aboveground versus belowground. Both nitrogen fixation and high fertilization led to ~10% less biomass allocated belowground (~10% more aboveground) than the uninoculated, lowest fertilization treatment. Fertilization reduced allocation to nodules relative to roots. The responses for allocation of aboveground tissues to leaves versus stems were not as consistent across greenhouses or species as the other allocation trends, though more nitrogen fixation consistently led to relatively more allocation to leaves when soil nitrogen supply was low. Synthesis: Our results suggest that symbiotic nitrogen fixation causes seedlings to allocate relatively less biomass belowground, with potential implications for competition and carbon storage in early forest development.

Ecology and Evolution↗
USGS2009

Character and Trends of Water Quality in the Blue River Basin, Kansas City Metropolitan Area, Missouri and Kansas, 1998 through 2007

Water-quality and ecological character and trends in the metropolitan Blue River Basin were evaluated from 1998 through 2007 to provide spatial and temporal resolution to factors that affect the quality of water and biota in the basin and provide a basis for assessing the efficacy of long-term combined sewer control and basin management plans. Assessments included measurements of stream discharge, pH, dissolved oxygen, specific conductance, turbidity, nutrients (dissolved and total nitrogen and phosphorus species), fecal-indicator bacteria (Escherichia coli and fecal coliform), suspended sediment, organic wastewater and pharmaceutical compounds, and sources of these compounds as well as the quality of stream biota in the basin. Because of the nature and myriad of factors that affect basin water quality, multiple strategies are needed to decrease constituent loads in streams. Strategies designed to decrease or eliminate combined sewer overflows (CSOs) would substantially reduce the annual loads of nutrients and fecal-indicator bacteria in Brush Creek, but have little effect on Blue River loadings. Nonpoint source reductions to Brush Creek could potentially have an equivalent, if not greater, effect on water quality than would CSO reductions. Nonpoint source reductions could also substantially decrease annual nutrient and bacteria loadings to the Blue River and Indian Creek. Methods designed to decrease nutrient loads originating from Blue River and Indian Creek wastewater treatment plants (WWTPs) could substantially reduce the overall nutrient load in these streams. For the main stem of the Blue River and Indian Creek, primary sources of nutrients were nonpoint source runoff and WWTPs discharges; however, the relative contribution of each source varied depending on how wet or dry the year was and the number of upstream WWTPs. On Brush Creek, approximately two-thirds of the nutrients originated from nonpoint sources and the remainder from CSOs. Nutrient assimilation processes, which reduced total nitrogen loads by approximately 13 percent and total phosphorus loads by double that amount in a 20-kilometer reach of the Blue River during three synoptic base-flow sampling events between August through September 2004 and September 2005, likely are limited to selected periods during any given year and may not substantially reduce annual nutrient loads. Bacteria densities typically increased with increasing urbanization, and bacteria loadings to the Blue River and Indian Creek were almost entirely the result of nonpoint source runoff. WWTPs contributed, on average, less than 1 percent of the bacteria to these reaches, and in areas of the Blue River that had combined sewers, CSOs contributed only minor amounts (less than 2 percent) of the total annual load in 2005. The bulk of the fecal-indicator bacteria load in Brush Creek also originated from nonpoint sources with the remainder from CSOs. From October 2002 through September 2007, estimated daily mean Escherichia coli bacteria density in upper reaches of the Blue River met the State of Missouri secondary contact criterion standard approximately 85 percent of the time. However, in lower Blue River reaches, the same threshold was exceeded approximately 45 percent of the time. The tributary with the greatest number of CSO discharge points, Brush Creek, contributed approximately 10 percent of the bacteria loads to downstream reaches. The tributary Town Fork Creek had median base-flow Escherichia coli densities that were double that of other basin sites and stormflow densities 10 times greater than those in other parts of the basin largely because approximately one-fourth of the runoff in the Town Fork Creek Basin is believed to originate in combined sewers. Genotypic source typing of bacteria indicated that more than half of the bacteria in this tributary originated from human sources with two storms contributing the bulk of all bacteria sourced as human. However, areas outsid

Scientific Investigations Report↗
USGS2012

Increased temperature and altered summer precipitation have differential effects on biological soil crusts in a dryland ecosystem

Biological soil crusts (biocrusts) are common and ecologically important members of dryland ecosystems worldwide, where they stabilize soil surfaces and contribute newly fixed C and N to soils. To test the impacts of predicted climate change scenarios on biocrusts in a dryland ecosystem, the effects of a 2–3 °C increase in soil temperature and an increased frequency of smaller summer precipitation events were examined in a large, replicated field study conducted in the cold desert of the Colorado Plateau, USA. Surface soil biomass (DNA concentration), photosynthetically active cyanobacterial biomass (chlorophyll a concentration), cyanobacterial abundance (quantitative PCR assay), and bacterial community composition (16S rRNA gene sequencing) were monitored seasonally over 2 years. Soil microbial biomass and bacterial community composition were highly stratified between the 0–2 cm depth biocrusts and 5–10 cm depth soil beneath the biocrusts. The increase in temperature did not have a detectable effect on any of the measured parameters over 2 years. However, after the second summer of altered summer precipitation pattern, significant declines occurred in the surface soil biomass (avg. DNA concentration declined 38%), photosynthetic cyanobacterial biomass (avg. chlorophyll a concentration declined 78%), cyanobacterial abundance (avg. gene copies g −1 soil declined 95%), and proportion of Cyanobacteria in the biocrust bacterial community (avg. representation in sequence libraries declined 85%). Biocrusts are important contributors to soil stability, soil C and N stores, and plant performance, and the loss or reduction of biocrusts under an altered precipitation pattern associated with climate change could contribute significantly to lower soil fertility and increased erosion and dust production in dryland ecosystems at a regional scale.

Global Change Biology↗
USGS2023

Aquatic vegetation types identified during early and late phases of vegetation recovery in the Upper Mississippi River

Assemblage patterns and processes of aquatic vegetation in most large floodplain rivers are not well understood, particularly after plant recovery. Identifying vegetation types, which are recurring plant groupings based on species composition, diversity, and abundances, can describe plant assembly patterns and environmental drivers that aid conservation planning and management. We used a 22-year dataset ( n = 18,000 sampling plots) to identify aquatic vegetation types during an “early phase” and “late phase” of plant recovery at multiple spatial scales nested within a 500-km river reach of the Upper Mississippi River, USA. We hypothesized that vegetation types varied according to scale because of the stark environmental differences among riverine habitats and differing regional species pools along the river's latitudinal gradient, and that the late phase of recovery had developed several new vegetation types. We first used cluster analyses at multiple spatiotemporal scales to identify the number of vegetation types and their characteristics, such as indicator species, species compositions and abundances, and diversity index. Then we applied a multivariate regression to pinpoint environmental factors (such as hydrodynamics, system productivity, local habitat, and water quality) that structured those vegetation types. Clustering revealed that ~90% of plots irrespective of recovery phase were not classified into vegetation types, which indicated that most aquatic sampling plots are unique in species composition and unpredictable. However, impounded areas upriver from dams had matured five vegetation types: lotus ( Nelumbo lutea Willd.), submersed (a mix of 11 common submersed species), watercelery ( Vallisneria americana Michx.), arrowheads ( Sagittaria rigida Pursh and Sagittaria latifolia Willd.), and a diverse community (with high diversity indices and multiple life forms). The vegetation types were associated with three environmental gradients related to inundation depth and duration, system productivity, and water clarity. These five vegetation types are known to be of high ecological value to fish and wildlife and thus targets for restoration, for example, the watercelery community is principal forage for migrating canvasback ducks ( Aythya valisineria ) along the Mississippi River flyway. Our results provide insights on vegetation assembly during recovery and aid habitat conservation by providing quantitative, environmental targets for restoration.

Illinois, Iowa, Minnesota, Wisconsin↗
USGS2008

Rainfall effects on rare annual plants

Variation in climate is predicted to increase over much of the planet this century. Forecasting species persistence with climate change thus requires understanding of how populations respond to climate variability, and the mechanisms underlying this response. Variable rainfall is well known to drive fluctuations in annual plant populations, yet the degree to which population response is driven by between-year variation in germination cueing, water limitation or competitive suppression is poorly understood. We used demographic monitoring and population models to examine how three seed banking, rare annual plants of the California Channel Islands respond to natural variation in precipitation and their competitive environments. Island plants are particularly threatened by climate change because their current ranges are unlikely to overlap regions that are climatically favourable in the future. Species showed 9 to 100-fold between-year variation in plant density over the 5–12 years of censusing, including a severe drought and a wet El Niño year. During the drought, population sizes were low for all species. However, even in non-drought years, population sizes and per capita growth rates showed considerable temporal variation, variation that was uncorrelated with total rainfall. These population fluctuations were instead correlated with the temperature after the first major storm event of the season, a germination cue for annual plants. Temporal variation in the density of the focal species was uncorrelated with the total vegetative cover in the surrounding community, suggesting that variation in competitive environments does not strongly determine population fluctuations. At the same time, the uncorrelated responses of the focal species and their competitors to environmental variation may favour persistence via the storage effect. Population growth rate analyses suggested differential endangerment of the focal annuals. Elasticity analyses and life table response experiments indicated that variation in germination has the same potential as the seeds produced per germinant to drive variation in population growth rates, but only the former was clearly related to rainfall. Synthesis . Our work suggests that future changes in the timing and temperatures associated with the first major rains, acting through germination, may more strongly affect population persistence than changes in season-long rainfall.

Journal of Ecology↗
USGS2015

Occupancy estimation for rare species using a spatially-adaptive sampling design

Summary 1. Spatially clustered populations create unique challenges for conservation monitoring programmes. Advances in methodology typically are focused on either the design or the modelling stage of the study but do not involve integration of both. 2. We integrate adaptive cluster sampling and spatial occupancy modelling by developing two models to handle the dependence induced by cluster sampling. We compare these models to scenarios using simple random sampling and traditional occupancy models via simulation and data collected on a rare plant species, Tamarix ramosissima , found in China. 3. Our simulations show a marked improvement in confidence interval coverage for the new models combined with cluster sampling compared to simple random sampling and traditional occupancy models, with greatest improvement in the presence of low detection probability and spatial correlation in occupancy. 4. Accounting for the design using the simple cluster random-effects model reduces bias considerably, and full spatial modelling reduces bias further, especially for large n when the spatial covariance parameters can be estimated reliably. Both new models build on the strength of occupancy modelling and adaptive sampling and perform at least as well, and often better, than occupancy modelling alone. 5. We believe our approach is unique and potentially useful for a variety of studies directed at patchily distributed, clustered or rare species exhibiting spatial variation.

Methods in Ecology and Evolution↗