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At least 1,495 records · Page 83Linked to original sources
USGS2011

A natural experiment on the condition-dependence of achromatic plumage reflectance in black-capped chickadees

Honest advertisement models posit that only individuals in good health can produce and/or maintain ornamental traits. Even though disease has profound effects on condition, few studies have experimentally tested its effects on trait expression and even fewer have identified a mechanistic basis for these effects. Recent evidence suggests that black and white, but not grey, plumage colors of black-capped chickadees (Poecile atricapillus) are sexually selected. We therefore hypothesized that birds afflicted with avian keratin disorder, a condition that affects the beak and other keratinized tissues, would show reduced expression of black and white, but not grey, color. UV-vis spectrometry of black-capped chickadees affected and unaffected by avian keratin disorder revealed spectral differences between them consistent with this hypothesis. To elucidate the mechanistic bases of these differences, we used scanning electron microscopy (SEM), electron-dispersive x-ray spectroscopy (EDX) and a feather cleaning experiment. SEM showed extreme feather soiling in affected birds, and EDX revealed that this was most likely from external sources. Experimentally cleaning the feathers increased color expression of ornamental feathers of affected, but not unaffected, birds. These data provide strong evidence that black and white color is an honest indicator in chickadees, and that variation in feather dirtiness, likely due to differences in preening behavior is a mechanism for this association.

PLoS ONE↗
USGS2015

The changing strength and nature of fire-climate relationships in the northern Rocky Mountains, U.S.A., 1902-2008

Time-varying fire-climate relationships may represent an important component of fire-regime variability, relevant for understanding the controls of fire and projecting fire activity under global-change scenarios. We used time-varying statistical models to evaluate if and how fire-climate relationships varied from 1902-2008, in one of the most flammable forested regions of the western U.S.A. Fire-danger and water-balance metrics yielded the best combination of calibration accuracy and predictive skill in modeling annual area burned. The strength of fire-climate relationships varied markedly at multi-decadal scales, with models explaining < 40% to 88% of the variation in annual area burned. The early 20th century (1902-1942) and the most recent two decades (1985-2008) exhibited strong fire-climate relationships, with weaker relationships for much of the mid 20th century (1943-1984), coincident with diminished burning, less fire-conducive climate, and the initiation of modern fire fighting. Area burned and the strength of fire-climate relationships increased sharply in the mid 1980s, associated with increased temperatures and longer potential fire seasons. Unlike decades with high burning in the early 20th century, models developed using fire-climate relationships from recent decades overpredicted area burned when applied to earlier periods. This amplified response of fire to climate is a signature of altered fire-climate-relationships, and it implicates non-climatic factors in this recent shift. Changes in fuel structure and availability following 40+ yr of unusually low fire activity, and possibly land use, may have resulted in increased fire vulnerability beyond expectations from climatic factors alone. Our results highlight the potential for non-climatic factors to alter fire-climate relationships, and the need to account for such dynamics, through adaptable statistical or processes-based models, for accurately predicting future fire activity.

Idaho, Montana↗
USGS2016

Nature vs. nurture: Evidence for social learning of conflict behaviour in grizzly bears

The propensity for a grizzly bear to develop conflict behaviours might be a result of social learning between mothers and cubs, genetic inheritance, or both learning and inheritance. Using non-invasive genetic sampling, we collected grizzly bear hair samples during 2011–2014 across southwestern Alberta, Canada. We targeted private agricultural lands for hair samples at grizzly bear incident sites, defining an incident as an occurrence in which the grizzly bear caused property damage, obtained anthropogenic food, or killed or attempted to kill livestock or pets. We genotyped 213 unique grizzly bears (118 M, 95 F) at 24 microsatellite loci, plus the amelogenin marker for sex. We used the program COLONY to assign parentage. We evaluated 76 mother-offspring relationships and 119 father-offspring relationships. We compared the frequency of problem and non-problem offspring from problem and non-problem parents, excluding dependent offspring from our analysis. Our results support the social learning hypothesis, but not the genetic inheritance hypothesis. Offspring of problem mothers are more likely to be involved in conflict behaviours, while offspring from non-problem mothers are not likely to be involved in incidents or human-bear conflicts themselves (Barnard’s test, p = 0.05, 62.5% of offspring from problem mothers were problem bears). There was no evidence that offspring are more likely to be involved in conflict behaviour if their fathers had been problem bears (Barnard’s test, p = 0.92, 29.6% of offspring from problem fathers were problem bears). For the mother-offspring relationships evaluated, 30.3% of offspring were identified as problem bears independent of their mother’s conflict status. Similarly, 28.6% of offspring were identified as problem bears independent of their father’s conflict status. Proactive mitigation to prevent female bears from becoming problem individuals likely will help prevent the perpetuation of conflicts through social learning.

Alberta↗
USGS2024

Validation of a real-time quaking-induced conversion (RT-QuIC) assay protocol to detect chronic wasting disease using rectal mucosa of naturally infected, pre-clinical white-tailed deer (Odocoileus virginianus)

Chronic wasting disease (CWD) is a fatal prion disease of cervids spreading across North America. More effective mitigation efforts may require expansion of the available toolkit to include new methods that provide earlier antemortem detection, higher throughput, and less expense than current immunohistochemistry (IHC) methods. The rectal mucosa near the rectoanal junction is a site of early accumulation of CWD prions and is safely sampled in living animals by pinch biopsy. A fluorescence-based, 96-well format, protein-aggregation assay-the real-time quaking-induced conversion (RT-QuIC) assay-is capable of ultra-sensitive detection of CWD prions. Notably, the recombinant protein substrate is crucial to the assay's performance and is now commercially available. In this blinded independent study, the preclinical diagnostic performance of a standardized RT-QuIC protocol using a commercially sourced substrate (MNPROtein) and a laboratory-produced substrate was studied using mock biopsy samples of the rectal mucosa from 284 white-tailed deer ( Odocoileus virginianus ). The samples were from a frozen archive of intact rectoanal junctions collected at depopulations of farmed herds positive for CWD in the United States. All deer were pre-clinical at the time of depopulation and infection status was established from the regulatory record, which evaluated the medial retropharyngeal lymph nodes (MRPLNs) and obex by CWD-IHC. A pre-analytic sample precipitation step was found to enhance the protocol's detection limit. Performance metrics were influenced by the choice of RT-QuIC diagnostic cut points (minimum number of positive wells and assay time) and by deer attributes (preclinical infection stage and prion protein genotype). The peak overall diagnostic sensitivities of the protocol were similar for both substrates (MNPROtein, 76.8%; laboratory-produced, 73.2%), though each was achieved at different cut points. Preclinical infection stage and prion protein genotype at codon 96 (G = glycine, S = serine) were primary predictors of sensitivity. The diagnostic sensitivities in late preclinical infections (CWD-IHC positive MPRLNs and obex) were similar, ranging from 96% in GG96 deer to 80% in xS96 deer (x = G or S). In early preclinical infections (CWD-IHC positive MRPLNs only), the diagnostic sensitivity was 64-71% in GG96 deer but only 25% in xS96 deer. These results demonstrate that this standardized RT-QuIC protocol for rectal biopsy samples using a commercial source of substrate produced stratified diagnostic sensitivities similar to or greater than those reported for CWD-IHC but in less than 30 hours of assay time and in a 96-well format. Notably, the RT-QuIC protocol used herein represents a standardization of protocols from several previous studies. Alignment of the sensitivities across these studies suggests the diagnostic performance of the assay is robust given quality reagents, optimized diagnostic criteria, and experienced staff.

PLoS ONE↗
USGS2011

Assessing the natural performance of felsic tuffs using the Rb-Sr and Sm-Nd systems-A study of the altered zone in the Topopah Spring Member, Paintbrush Tuff, Yucca Mountain, Nevada

Core samples of the Topopah Spring Member of the Paintbrush Tuff from drill hole UE25A#1 were analyzed for Sr and Nd isotopes and selected minor and trace elements to constrain the origin of a zcolitized zone associated with the lower vitrophyre. The Sm-Nd radiogenic isotope system was unperturbed by the alteration, but the Rb-Sr system was severely disturbed in the altered zone. The thick, densely welded high-silica rhyolite is remarkably uniform in composition with only a slight decrease in initial 87 Sr/ 86 Sr ratios with depth (0.7129–0.7125). Quartz latite in the upper part of the Topopah Spring has significantly lower initial Sr isotope ratios (0.7095–0.7114). Locally in the altered zone, Sr and Ca were gained in substantial amounts, and K, Rb, and Y were removed. Ti, Zr, Nb, Ba, La, Ce, Sm, and Nd were relatively immobile during the alteration. Sr added to the altered zone had an isotopic composition of 0.7119 ± 0.0002 and was probably derived from dissolution of glass in the bulk Topopah Spring (high silica rhyolite + quartz latite) and transported downward by infiltration.

Nevada↗
USGS1954

The nature of bacteria pathogenic to fish

A review is made of the progress in research on bacteria which are pathogenic to fish, with particular emphasis on those investigations performed during the past decade. The report includes a critical review of material published; the comments and suggestions are designed to stimulate the initiation of new research projects.

Transactions of the American Fisheries Society↗
USGS1959

Infectious nature of pancreatic necrosis

To determine if pancreatic necrosis is a communicable disease of trout, lots of eyed brook trout eggs were obtained from four hatcheries. Pancreatic necrosis appeared spontaneously in trout from one of these hatcheries and the other strains were exposed to infection by suspension prepared from diseased fish. In all cases, typical pancreatic necrosis appeared in fish exposed to infection and the control fish remained healthy. Disease was more acute in fry fed brine shrimp nauplii than in those fed beef liver. Mortality data suggest that susceptibility to pancreatic necrosis decreases with the increased age of trout. No treatment for the disease is known, but sanitary measures were effective in preventing its spread.

Transactions of the American Fisheries Society↗
USGS1984

First evidence of successful natural reproduction by planted lake trout in Lake Huron

Twenty-two lake trout (Salvelinus namaycush) swim-up fry, 24-27 mm long, were captured with emergent fry traps and a tow net in northwestern Lake Huron on a small nearshore reef off Alpena, Michigan, between May 10 and June 1, 1982. These catches represent the first evidence of successful production of swim-up fry by planted, hatchery-reared lake trout in Lake Huron since the lake trout rehabilitation program began in 1973.

North American Journal of Fisheries Management↗
USGS2000

Physiological status of naturally reared juvenile spring chinook salmon in the Yakima River: Seasonal dynamics and changes associated with smolting

Two year-classes of juvenile spring chinook salmon Oncorhynchus tshawytscha from the Yakima River, Washington, were sampled from July (3-4 months postemergence) through May (yearling smolt out-migration). Physiological characters measured included liver glycogen, body lipid, gill Na+-K+ ATPase, plasma thyroxine (T4), and plasma insulin-like growth factor-I (IGF-I). Distinct physiological changes were found that corresponded to season. Summer and fall were characterized by relatively high body lipid and condition factor. Winter was characterized by decreases in body lipid, condition factor, and plasma hormones. An increase in condition factor and body lipid was found in February and March. Finally, April and May were characterized by dramatic changes characteristic of smolting, including increased gill Na+-K+ ATPase activity, plasma T4, and IGF-I and decreased condition factor, body lipid, and liver glycogen. These results create a physiological template for juvenile spring chinook salmon in the drainage that provides a baseline for comparison with other years, populations, and life history types. In addition, this baseline provides a standard for controlled laboratory experiments and a target for fish culturists who rear juvenile spring chinook salmon for release from conservation hatcheries. The implications of these results for juvenile chinook salmon ecology and life history are discussed.

Washington↗
USGS2001

Spawning migration of lacustrine-adfluvial bull trout in a natural area

We investigated the spawning migration of lacustrine-adfluvial bull trout Salvelinus confluentus in the North Fork Skokomish River in Olympic National Park (Washington State) during 1996. Day-snorkeling and electrofishing were conducted to determine timing and duration of the migration and the distribution and abundance of bull trout. The primary spawning migration began in early October and was waning by December. Bull trout migrated 6 km or less up the river from Lake Cushman. Increased river discharge and decreased water temperature appeared to be the primary environmental variables corresponding to the initiation of the migration. Mean length of migratory bull trout increased from June to December. Comparisons with other lacustrine-adfluvial bull trout populations in Oregon, Montana, Idaho, and British Columbia suggested that these populations exhibit specific migratory strategies related to local environmental conditions.

Washington↗
USGS1999

The potential role of natural tumor promoters in marine turtle fibropapillomatosis

Fibropapillomatosis (FP) in green turtles Chelonia mydas is a debilitating, neoplastic disease that has reached worldwide epizootic levels. The etiology of FP is unknown but has been linked to oncogenic viruses. Toxic benthic dinoflagellates (Prorocentrum spp.) are not typically considered tumorigenic agents, yet they have a worldwide distribution and produce a tumor promoter, okadaic acid (OA). Prorocentrum spp. are epiphytic on macroalgae and seagrasses that are normal components of green turtle diets. Here we show that green turtles in the Hawaiian Islands consume Prorocentrum and that high-risk FP areas are associated with areas where P. lima and P. concavum are both highly prevalent and abundant. The presence of presumptive OA in the tissues of Hawaiian green turtles further suggests exposure and a potential role for this tumor promoter in the etiology of FP.

Hawai'i↗
USGS1996

Natural thermal refugia for temperate warmwater stream fishes

The seasonal use of an Ozark spring branch by fishes was evaluated from January 1993 to January 1995. Temperatures in the spring branch were fairly constant, at 13.5 ± 1°C, and usually exceeded the temperature of a receiving stream during the November–March coldwater period. Black redhorse Moxostoma duquesnei , smallmouth bass Micropterus dolomieu , shadow bass Ambloplites ariommus , and longear sunfish Lepomis megalotis showed a temporal pattern of use in the spring branch. The lowest use was during the April–October warmwater period, and the greatest use was during the coldwater period. During cold periods, biomass of these four species in the spring branch was significantly greater and fish size significantly larger than in similar habitats in the adjoining stream. The weight per unit length of fish using the spring branch during cold periods was also significantly greater. Shadow bass and longear sunfish had significantly greater relative stomach contents than conspecifics in equivalent habitats from the adjoining stream, but had similar relative numbers of eggs. Large concentrations of adult fish used spring branches during the coldwater period, and these fish may be more vulnerable to angling than conspecifics in similar habitats in adjoining streams dominated by surface water. Thus, we suggest that stream managers consider the usefulness of fish refuges in spring branches and adjacent thermally influenced areas.

Missouri↗
USGS2019

Wild canid distribution and co-existence in a natural–urban matrix of the Pioneer Valley of Western Massachusetts

Although development and urbanization are typically believed to have negative impacts on carnivoran species, some species can successfully navigate an urban matrix. Sympatric carnivorans compete for limited resources in urban areas, likely with system-specific impacts to their distributions and activity patterns. We used automatically triggered wildlife cameras to assess the local distribution and co-existence of Canis latrans (Coyote) , Vulpes vulpes (Red Fox), and Urocyon cinereoargenteus (Gray Fox) across the Pioneer Valley, MA, in relation to different levels of human development. We placed cameras at 79 locations in forested, altered, and urban land-use areas from September to November 2012 and accumulated 1670 trap nights. We determined site characteristics and detection rates for 12 other wildlife species for each camera location to develop a generalized linear model for the local distribution of each focal canid species across the study area. We also compared diel activity patterns among Coyotes, Red Foxes, and Gray Foxes, and calculated coefficients of overlap between each pair. The local distribution of Coyotes was positively associated with the detection rates of their prey and not associated with detection rates of sympatric carnivoran species. Red Foxes and Gray Foxes had negative relationships with the detection rate of Coyotes, and none of the 3 canid species showed a positive correlation with increased levels of urbanization. There was a high degree of temporal overlap in diel activity patterns and limited spatial overlap of our focal species, which suggests that any competition avoidance across our study area occurred at the spatial level. Coyotes fill the role of top predator in the Pioneer Valley, and likely have a negative impact on the local distributions of smaller canids, while their own local distributions seem to be driven by prey availability.

Massachesetts↗
USGS2012

Prevalence of a potentially lethal parasite of wading birds in natural and agricultural wetlands in south Louisiana

Gambusia affinis (Western Mosquitofish) were sampled from 18 sites representing marsh, forested wetlands, and agricultural wetlands in south Louisiana to determine distribution and infection parameters of Eustrongylides ignotus , a potentially lethal nematode parasite of wading birds, ( n = 400 per site). Overall, prevalence of infection was 0.3%, with significantly higher prevalence in agricultural wetlands than in marshes or swamps. Our findings are similar to work in Florida suggesting parasite prevalence is higher in disturbed wetlands, and suggest that birds foraging in crayfish ponds and rice fields may be at increased risk of exposure.

Louisiana↗
USGS2002

Natural history of a northern population of twin-spotted rattlesnakes, Crotalus pricei

The twin-spotted rattlesnake ( Crotalus pricei ) is a small-bodied pitviper that has received little attention in the literature to date. The species reaches the northern limit of its range in southeastern Arizona, where it inhabits higher elevations than any of the state's 10 other rattlesnake species. During 1997–2000, we captured, measured, and marked 127 C. pricei in Arizona's Chiricahua Mountains between 2530 and 2900 m elevation. We also used radiotelemetry to track the movements of 16 C. pricei in the study area during 1997–1998. Mean (± SE) snout–vent length of C. pricei was 387.8 ± 8.3 mm (range = 168–572), and mean mass was 53.5 ± 3.3 g (range = 3.6–188.5). Based on fecal analyses, lizards constituted the bulk of prey (74%), but the diet of C. pricei also included mammals, birds, and a conspecific. Mating was concentrated in August and early September and parturition took place during late July and August. Mean number of embryos was 3.94 ± 0.34 (range = 1–6) and female reproduction appeared biennial or less frequent. Based on shed and growth rates, female C. pricei develop embryos at 4–5 years of age. Gravid females maintained warmer body temperatures relative to substrate temperature than nongravid females or males, presumably by spending more time basking than other snakes. Radiotelemetry revealed that movement patterns varied from year to year, as males moved over six times farther per week during the 1998 monsoon season (July to September) than during the 1997 monsoon season. Additionally, use of talus slopes by males decreased during 1998. During dry years, such as 1998, males may be forced off talus into cooler microclimates where resources are less concentrated than on talus.

Journal of Herpetology↗
USGS2003

Uta stansburiana and Elgaria multicarinata on the California Channel Islands: Natural dispersal or artificial introduction?

Uta stansburiana and Elgaria multicarinata occur on several California Channel Islands, and recent introduction of some populations has been suggested because of similarity in life-history traits and body size to mainland populations. We sequenced representatives of each species from mainland southern California and some of the islands on which they occur. For each species, cytochrome b sequence divergence is low across the narrow geographic area sampled. Analyses of 14 haplotypes of U. stansburiana suggest long-established residency on Santa Catalina and San Clemente Islands but more recent arrival on San Nicolas and Santa Cruz Islands. Analyses of eight haplotypes of E. multicarinata suggest these lizards may have been recently transported to San Nicolas Island.

Journal of Herpetology↗
USGS2004

Invertebrate egg banks of restored, natural, and drained wetlands in the Prairie Pothole Region of the United States

Analogous to ‘seed banks,’ ‘egg banks’ are important for seasonal succession and maintenance of invertebrate species diversity throughout wet and dry cycles in the prairie pothole region. Further, recruitment of invertebrates from relic egg banks in the sediments and dispersal of eggs into wetlands is believed to be important for reestablishment of invertebrates in recently restored wetlands. Alhough tens-ofthousands of wetlands have been restored in the prairie pothole region of the United States, studies have not been conducted to evaluate the recovery of invertebrate egg banks in restored wetlands. We used taxon richness and abundance as indicators of potential egg bank recovery and compared these parameters in restored wetlands to those of non-drained and drained wetlands with a history of cultivation and also to reference wetlands with no history of cultivation. We found few significant differences among wetland categories within three physiographic regions (Glaciated Plains, Missouri Coteau, and Prairie Coteau). Most statistical comparisons indicated that restored wetlands had invertebrate egg banks similar to reference, nondrained, and drained wetlands. The one exception was drained seasonal wetlands in the Glaciated Plains, which had significantly lower taxon richness and invertebrate abundance than the other wetland categories. Trends did suggest that invertebrate egg bank taxon richness and abundance are increasing in restored seasonal wetlands relative to their drained analogues, whereas a similar trend was not observed for restored semi-permanent wetlands. Although recovery was not related to years since restoration, comparisons of restored wetlands with reference wetlands suggest that recovery potential may be inversely related to the extent of wetland drainage and intensive agriculture that varies spatially in the prairie pothole region. Our research suggests that periodic drawdowns of semi-permanent restored wetlands may be needed to promote production and development of invertebrate egg banks. Inoculation of restored wetlands may also be needed in areas where extensive wetland drainage has resulted in fewer wetland habitats to provide sources of passively dispersed eggs to newly restored wetlands.

Iowa, Minnesota, Montana, North Dakota, South Dako↗