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At least 1,495 records · Page 83Linked to original sources
USGS2014

Effect of passive acoustic sampling methodology on detecting bats after declines from white nose syndrome

Concomitant with the emergence and spread of white-nose syndrome (WNS) and precipitous decline of many bat species in North America, natural resource managers need modified and/or new techniques for bat inventory and monitoring that provide robust occupancy estimates. We used Anabat acoustic detectors to determine the most efficient passive acoustic sampling design for optimizing detection probabilities of multiple bat species in a WNS-impacted environment in New York, USA. Our sampling protocol included: six acoustic stations deployed for the entire duration of monitoring as well as a 4 x 4 grid and five transects of 5-10 acoustic units that were deployed for 6-8 night sample durations surveyed during the summers of 2011-2012. We used Program PRESENCE to determine detection probability and site occupancy estimates. Overall, the grid produced the highest detection probabilities for most species because it contained the most detectors and intercepted the greatest spatial area. However, big brown bats ( Eptesicus fuscus ) and species not impacted by WNS were detected easily regardless of sampling array. Endangered Indiana ( Myotis sodalis ) and little brown ( Myotis lucifugus ) and tri-colored bats ( Perimyotis subflavus ) showed declines in detection probabilities over our study, potentially indicative of continued WNS-associated declines. Identification of species presence through efficient methodologies is vital for future conservation efforts as bat populations decline further due to WNS and other factors.

Journal of Ecology and the Natural Environment↗
USGS2024

Incorporating climate change into restoration decisions: Perspectives from dam removal practitioners

Incorporating climate change into conservation and restoration decisions is increasingly important for natural resource managers and restoration practitioners to effectively address the underlying drivers of ecosystem change. Small dam removal is an example of a restoration tool that may offer multiple socioeconomic and ecological benefits in streams, including promoting climate resilience. With the pace of dam removals increasing, practitioners and researchers are well-poised to incorporate climate change into future dam removal decisions. Therefore, we surveyed dam removal practitioners across 14 states in the eastern United States to understand current practices of small dam removals, factors driving restoration decisions, and how climate change knowledge is incorporated into these decisions. We also aimed to identify barriers to and opportunities for knowledge exchange between practitioners and researchers. Of the 100 respondents, most (79%) consider climate change in their dam removal decisions to some extent. Despite this, many reported a lack of clear, relevant, and accessible data linking small dam removal to climate resilience benefits. Dam removal practitioners also indicated that they most often rely on climate change information garnered from conversations with colleagues, rather than from scientific research products. These results suggest that the co-production of relevant, salient research questions and readily accessible and interpretable research products (e.g., technical summaries, open access articles) may encourage practitioners to incorporate climate change science more consistently and efficiently into dam removal decisions. These findings may also translate to other stream restoration efforts to inform knowledge exchange and improve restoration outcomes in a changing climate.

Connecticut, Delaware, Kentucky, Maine, Maryland, ↗
USGS2006

Resource availability controls fungal diversity across a plant diversity gradient

Despite decades of research, the ecological determinants of microbial diversity remain poorly understood. Here, we test two alternative hypotheses concerning the factors regulating fungal diversity in soil. The first states that higher levels of plant detritus production increase the supply of limiting resources (i.e. organic substrates) thereby increasing fungal diversity. Alternatively, greater plant diversity increases the range of organic substrates entering soil, thereby increasing the number of niches to be filled by a greater array of heterotrophic fungi. These two hypotheses were simultaneously examined in experimental plant communities consisting of one to 16 species that have been maintained for a decade. We used ribosomal intergenic spacer analysis (RISA), in combination with cloning and sequencing, to quantify fungal community composition and diversity within the experimental plant communities. We used soil microbial biomass as a temporally integrated measure of resource supply. Plant diversity was unrelated to fungal diversity, but fungal diversity was a unimodal function of resource supply. Canonical correspondence analysis (CCA) indicated that plant diversity showed a relationship to fungal community composition, although the occurrence of RISA bands and operational taxonomic units (OTUs) did not differ among the treatments. The relationship between fungal diversity and resource availability parallels similar relationships reported for grasslands, tropical forests, coral reefs, and other biotic communities, strongly suggesting that the same underlying mechanisms determine the diversity of organisms at multiple scales. ?? 2006 Blackwell Publishing Ltd/CNRS.

Ecology Letters↗
USGS2020

Components and predictors of biological soil crusts vary at the regional vs. plant community scales

Although biological soil crusts (biocrusts) occur globally in arid and semi-arid environments, most of our knowledge of biocrust cover and ecology is from a relatively small number of locations worldwide. Some plant communities are known to have high cover of biocrusts, but the abundance of biocrusts is largely undocumented in most plant communities. Using a data driven approach, we identified 16 plant communities based on plant cover from the Assessment, Inventory, and Monitoring Strategy data from the Bureau of Land Management (AIM, 5,200 plots). We found that abundance of lichens and mosses varies among communities, but that both components of biocrusts are present in all plant communities. Biocrusts are indicators of two of these communities: one that is defined by high cover of mosses and basin big sagebrush and one that is defined by high cover of lichens and shadscale saltbush. Using non-parametric multiplicative regression, we evaluated a suite of abiotic and disturbance variables to assess the degree to which climate and soils are associated with the abundance of lichens and mosses at the regional scale. At the regional scale, soil depth and maximum vapor pressure deficit were found to be strongly associated with the abundance of lichens and January minimum temperature dictated the abundance of mosses. At the scale of plant communities, community specific metrics of soils and climate were better able to explain the abundance of biocrusts. Our demonstration of the presence of biocrusts across the western US suggests that studies on ecosystem function could include these organisms because they are present in all plant communities, maintain arguably stronger associations with climatic variation, are directly associated with soils, and contribute to ecosystem functions that are not solely maintained by vascular plants.

Frontiers in Ecology and Evolution↗
USGS2026

Estimation of parental abundance using hierarchical Bayesian modeling with data augmentation

Pedigree-based estimation methods leverage the fact that each offspring in a cohort is genotypically “marked” by its parents and represent a recent and promising toolset for estimating population dynamics. This includes pedigree accumulation estimators that model the “accumulation” of inferred unique parents within a given cohort to estimate parental abundance. Unlike close-kin mark-recapture approaches, which rely on intercohort comparisons, pedigree accumulation modeling can be completed solely using intracohort samples. This is particularly advantageous for semelparous species, where intercohort pairs are impossible and adult life stages can be difficult to sample without affecting their likelihood of successfully reproducing. Previous work has evaluated a range of estimators for such datasets, concluding that the non-parametric Chao estimator provides the most accurate and precise estimates for feasible levels of sampling effort. We used simulated data to evaluate an alternative estimator based on hierarchical modeling and data augmentation in a Bayesian framework. Results indicate that estimates from the hierarchical Bayesian estimator had comparable accuracy and better precision than both the previously tested Chao1 estimator and the improved iChao formulation across a range of sample sizes and sex ratios. Furthermore, the Bayesian estimator was far more robust to simulated errors in pedigree reconstruction, especially the presence of false negatives. Hierarchical Bayesian pedigree accumulation models can also provide additional insight into underlying reproductive ecology through their use of an explicit observation process, allowing for the incorporation or estimation of species- and population-specific reproductive dynamics. More broadly, the parametric nature of these models offers opportunities to efficiently pool information among datasets as well as to propagate uncertainty within more complex models.

Ecology and Evolution↗
USGS2017

Shorebird stopover habitat decisions in a changing landscape

To examine how habitat use by sandpipers ( Calidris spp.; Baird's sandpipers, dunlin, least sandpipers, pectoral sandpipers, semipalmated sandpipers, stilt sandpipers, and white-rumped sandpipers) varies across a broad suite of environmental conditions, we conducted surveys at wetlands throughout the spring migratory period in 2013 and 2014 in 2 important stopover regions: the Rainwater Basin (RWB) in Nebraska, USA, and the Prairie Pothole Region (PPR) in South Dakota, USA. Because providing adequate energetic resources for migratory birds is a high priority for wetland management, we also measured invertebrate abundance at managed wetlands in the RWB to determine how food abundance influences the occupancy and abundance of sandpipers on wetlands throughout the migratory period. To quantify habitat use, we surveyed wetlands every 7–10 days in both regions and visually estimated wetland attributes. Our results indicate that invertebrate abundance predicted occupancy, but not abundance, of sandpipers at wetlands in the RWB. The wetland vegetation characteristics that predict sandpiper occupancy are similar in both regions, but wetlands in the PPR support a higher abundance of sandpipers than wetlands in the RWB. Our results suggest that sandpipers make stopover decisions that balance local and regional wetland conditions. Managers should maintain the cues (i.e., mudflat) and ecological conditions beyond invertebrate abundance that predict sandpiper habitat use to successfully provide resources for sandpipers during migratory stopover if that is a goal of wetland management. © 2017 The Wildlife Society.

Nebraska, South Dakota↗
USGS2020

Effectiveness of partial sedation to reduce stress in captured mule deer

Information garnered from the capture and handling of free-ranging animals helps advance understanding of wildlife ecology and can aid in decisions on wildlife management. Unfortunately, animals may experience increased levels of stress, injuries, and death resulting from captures (e.g., exertional myopathy, trauma). Partial sedation is a technique proposed to alleviate stress in animals during capture, yet efficacy of partial sedation for reducing stress and promoting survival post-capture remains unclear. We evaluated the effects of partial sedation on physiological, biochemical, and behavioral indicators of acute stress and probability of survival post-capture for mule deer ( Odocoileus hemionus ) that were captured via helicopter net-gunning in the eastern Greater Yellowstone Ecosystem, Wyoming, USA. We administered 10–30 mg of midazolam and 15 mg of azaperone intramuscularly (IM) to 32 mule deer in 2016 and 53 mule deer in 2017, and maintained a control group (captured but not sedated) of 38 mule deer in 2016 and 54 mule deer in 2017. To evaluate indicators of acute stress, we measured heart rate, blood-oxygen saturation, body temperature, respiration rate, and levels of serum cortisol. We recorded number of kicks and vocalizations of deer during handling and evaluated behavior during release. We also measured levels of fecal glucocorticoids as an indicator of baseline stress. Midazolam and azaperone did not reduce physiological, biochemical, or behavioral indicators of acute stress or influence probability of survival post-capture. Mule deer that were administered midazolam and azaperone, however, were more likely to hesitate, stumble or fall, and walk during release compared with individuals in the control group, which were more likely to trot, stot, or run without stumbling or falling. Our findings suggest that midazolam (10–30 mg IM) and azaperone (15 mg IM) may not yield physiological or demographic benefits for captured mule deer as previously assumed and may pose adverse effects that can complicate safety for captured animals, including drug-induced lethargy. Although we failed to find efficacy of midazolam and azaperone as a method for reducing stress in captured mule deer, the efficacy of midazolam and azaperone or other combinations of partial sedatives in reducing stress may depend on the dose of tranquilizer, study animal, capture setting, and how stress is defined.

Wyoming↗
USGS2019

Environmental gradients influence differences in leaf functional traits between native and non-native plants

Determining the characteristics of non-native plants that can successfully establish and spread is central to pressing questions in invasion ecology. Evidence suggests that some non-native species establish and spread in new environments because they possess characteristics (functional traits) that allow them to either successfully compete with native residents or fill previously unfilled niches. However, the relative importance of out-competing native species vs. filling empty niche space as potential mechanisms of invasion may depend on environmental characteristics. Here, we measured plant functional traits, proxies indicative of competitive and establishment strategies, to determine if these traits vary among native and invasive species and if their prevalence is dependent on environmental conditions. Using a natural environmental gradient in Hawai’i Volcanoes National Park, we evaluated how functional traits differ between native and non-native plant communities and if these differences change along an environmental gradient from hot, dry to cool, wet conditions. Functional trait differences suggested that both competition and open niche space may be important for invasion. Non-native communities tended to have traits associated with faster growth strategies such as higher specific leaf area and lower leaf thickness. However, native and non-native community traits became more dissimilar along the gradient, suggesting that non-native species may be occupying previously unfilled niche space at the hot, dry end of the gradient. We also found that most of the variation in functional trait values amongst plots was due to species turnover rather than intraspecific variation. These results highlight the role of environmental context when considering invasion mechanisms.

Hawaii↗
USGS2025

Factors structuring macrofaunal communities of hydrocarbon seeps along the Cascadia margin

Cold seeps, fueled by hydrocarbon-based chemosynthesis, support unique benthic communities that can vary across small spatial scales influenced by local geochemistry. We examined the community structure and function of macrofauna in cold seeps along the Cascadia margin on the edge of gas hydrate stability—a dynamic environment that may fluctuate as seafloor temperatures change. These communities were assessed in relation to their sediment environment to provide baseline data for these previously uninvestigated seeps and decipher the most significant variables structuring them. Specific environmental drivers investigated include sediment organic carbon, total nitrogen, C:N ratios, stable isotopes (δ 13 C and δ 15 N), redox potential, grain size, and porefluid chemistry. Macrofaunal community composition varied across locations separating into twelve distinct clusters. Several co-located cores clustered separately, indicating high heterogeneity in these communities at small spatial scales. Significant drivers of macrofauna communities included clay and sand content, C:N, δ 15 N values, organic carbon content, and depth. Functional trait composition was influenced by similar drivers, including depth, δ 15 N values, C:N, and sand content. Our results indicate similar environmental variables structure macrofaunal community composition and function across small- and large-scale gradients, contributing to our understanding of heterogeneity in local and regional factors that shape seep macrofaunal communities. This is the first investigation of macrofauna at these recently discovered seeps and provides baseline data on the hydrate stability zone for future comparisons, advancing our knowledge of broad-scale trends in seep macrofauna ecology.

California, Oregon, Washington↗
USGS2026

Predicting reach-scale macroinvertebrate community changes due to declining flows in an aridland river

Understanding the connection between streamflow and macroinvertebrate community structure is critical for managing river ecosystems under scenarios of change caused by human activities and drought. Streamflow influences physical habitat characteristics, including depth, water velocity, and substrate composition, which structure macroinvertebrate communities. Although strong empirical evidence has linked macroinvertebrates to these variables, most studies are correlative, and predictive approaches that link altered streamflow to changes in habitat availability and community structure remain limited. To address this gap, we coupled benthic macroinvertebrate surveys with reach-scale, 2-dimensional hydraulic models to quantify changes in community structure in response to altered streamflows. We characterized macroinvertebrate communities and physical habitat conditions in riffle, run, and pool mesohabitats across 3 reaches of a free-flowing section of the Verde River (Arizona, USA) over 3 y and developed hydraulic models using overflight data, ground surveys, and streamflow monitoring. Macroinvertebrate communities differed among mesohabitats, with riffles supporting higher macroinvertebrate densities and pools exhibiting higher taxonomic richness. The 2-dimensional hydraulic models indicated that declining streamflows could reduce the area of suitable habitat in riffles and runs relative to pools, potentially shifting the distribution of mesohabitats and altering community composition. These changes may lead to declines in overall macroinvertebrate diversity and abundance under reduced flow conditions. By explicitly linking streamflow to habitat availability and community structure, this study demonstrates how integrating hydraulic modeling with biological surveys can improve predictions of ecological response to flow alteration. This framework provides a basis for flow management strategies aimed at maintaining habitat heterogeneity and supporting biodiversity in river networks.

Arizona↗
USGS2017

Envisioning, quantifying, and managing thermal regimes on river networks

Water temperatures fluctuate in time and space, creating diverse thermal regimes on river networks. Temporal variability in these thermal landscapes has important biological and ecological consequences because of nonlinearities in physiological reactions; spatial diversity in thermal landscapes provides aquatic organisms with options to maximize growth and survival. However, human activities and climate change threaten to alter the dynamics of riverine thermal regimes. New data and tools can identify particular facets of the thermal landscape that describe ecological and management concerns and that are linked to human actions. The emerging complexity of thermal landscapes demands innovations in communication, opens the door to exciting research opportunities on the human impacts to and biological consequences of thermal variability, suggests improvements in monitoring programs to better capture empirical patterns, provides a framework for suites of actions to restore and protect the natural processes that drive thermal complexity, and indicates opportunities for better managing thermal landscapes.

Washington↗
USGS2024

Projected changes in mangrove distribution and vegetation structure under climate change in the southeastern United States

Aim The climate change-induced transition from grass-dominated marshes to woody-plant-dominated mangrove forests has the potential to impact the ecosystem goods and services provided by coastal wetlands. To better anticipate and prepare for these impacts, there is a need to advance understanding of future changes in mangrove distribution and coastal wetland vegetation structural properties due to warming winters. Location Southeastern United States. Time Period Recent (1981–2010) and future (2071–2100). Major Taxa Studied Coastal wetland vegetation. Methods We estimated changes in mangrove distribution and coastal wetland vegetation structure using known climate-ecological relationships, recent climate data for the period 1981–2010, and future projected climate data for the period 2071–2100. We quantified potential changes in mangrove presence, mangrove relative abundance, coastal wetland vegetation height, and coastal wetland vegetation aboveground biomass under two Shared Socio-Economic Pathway scenarios (SSPs; SSP2-4.5 and SSP5-8.5), which correspond to intermediate and high greenhouse gas emissions scenarios, respectively. Results Our analyses indicate that mangrove presence and relative abundance will dramatically increase in the northern Gulf of Mexico and the southeast Atlantic coast of the United States, particularly under the high emissions scenario. Because of the higher stature of mangroves relative to salt marsh vegetation, this expansion will cause a transformative change in coastal wetland vegetation height and aboveground biomass in many areas. However, along the arid southern Texas coast, low precipitation and high salinities are expected to constrain mangrove expansion and growth. Main Conclusions Our results show where and to what extent climate change, in the form of winter temperature warming, is projected to enable the transition from shorter, grass-dominated salt marshes to taller, woody plant-dominated mangrove forests in the southeastern United States, with consequent impacts on ecosystem goods and services.

Journal of Biogeography↗
USGS2012

Spatial and temporal dynamics of cyanotoxins and their relation to other water quality variables in Upper Klamath Lake, Oregon, 2007-09

Phytoplankton blooms dominated by cyanobacteria that occur annually in hypereutrophic Upper Klamath Lake, Oregon, produce microcystins at concentrations that may contribute to the decline in populations of endangered Lost River ( Deltistes luxatus ) and shortnose ( Chasmistes brevirostris ) suckers. During 2007–09, water samples were collected from Upper Klamath Lake to determine the presence and concentrations of microcystins and cylindrospermopsins and to relate the spatial and temporal occurrences of microcystins to water quality and other environmental variables. Samples were analyzed for intracellular (particulate) and extracellular (dissolved) microcystins and cylindrospermopsins using enzyme-linked immunosorbent assays (ELISA). Samples contained the highest and most variable concentrations of microcystins in 2009, the year in which an earlier and heavier Aphanizomenon flos-aquae -dominated phytoplankton bloom occurred. Concentrations were lowest in 2008 when the bloom was lighter, overall, and delayed by nearly 1 month. Microcystins occurred primarily in dissolved and large (> 63 μm) particulate forms in all years of the study, and overall, concentrations were highest at MDT (the deepest site in the study) and HDB, although HDB was sampled only in 2007 and MDT was not sampled in 2008. Comparisons among daily median total microcystin concentrations; chlorophyll a concentrations; total, dissolved, and particulate nutrient concentrations; and nutrient ratios measured in 2009 and between 2007 and 2009 indicate that microcystin concentrations generally increase following the decline of the first A. flos-aquae -dominated bloom of each season in response to an increase in bioavailable nitrogen and phosphorus. Nitrogen fixation by A. flos-aquae early in the sample season appears to provide new nitrogen for growth of toxigenic Microcystis aeruginosa , whereas, later in the season, these species appear to co-exist. Understanding the ecological interactions between these species may be important for predicting periods of elevated cyanotoxin concentrations and has important implications for management of this lake.

Oregon↗
USGS2011

Ictalurids in Iowa’s streams and rivers: Status, distribution, and relationships with biotic integrity

Anthropogenic alterations to Iowa’s landscape have greatly altered lotic systems with consequent effects on the biodiversity of freshwater fauna. Ictalurids are a diverse group of fishes and play an important ecological role in aquatic ecosystems. However, little is known about their distribution and status in lotic systems throughout Iowa. The purpose of this study was to describe the distribution of ictalurids in Iowa and examine their relationship with ecological integrity of streams and rivers. Historical data (i.e., 1884–2002) compiled for the Iowa Aquatic Gap Analysis Project (IAGAP) were used to detect declines in the distribution of ictalurids in Iowa streams and rivers at stream segment and watershed scales. Eight variables characterizing ictalurid assemblages were used to evaluate relationships with index of biotic integrity (IBI) ratings. Comparisons of recent and historic data from the IAGAP database indicated that 9 of Iowa’s 10 ictalurid species experienced distribution declines at one or more spatial scales. Analysis of variance indicated that ictalurid assemblages differed among samples with different IBI ratings. Specifically, total ictalurid, sensitive ictalurid, and Noturus spp. richness increased as IBI ratings increased. Results indicate declining ictalurid species distributions and biotic integrity are related, and management strategies aimed to improve habitat and increase biotic integrity will benefit ictalurid species.

American Fisheries Society Symposium↗
USGS2025

Future forest conditions under alternative management and hydrological scenarios in the Upper Mississippi River floodplain

Context Floodplain forests are being transformed by multiple pressures, prompting widespread management and restoration efforts. It is uncertain how disturbances, including hydrologic change, and management actions will interact to influence the ecology of these threatened forests. Objectives This study examined the effects of alternative management and hydrologic regimes on forest succession at an Upper Mississippi River floodplain site with a restoration project in planning. Methods We used the spatially explicit forest landscape model, LANDIS-II, to simulate forest succession for 100 years under four hydrogeomorphic management scenarios, three forest management scenarios, and two scenarios of future hydrologic conditions. We evaluated changes in forest biomass and composition over time and assessed the relative importance of management actions and hydrologic change on succession. Results Forest aboveground biomass decreased in all management-hydrology scenarios, especially in the wetter hydrological scenario. Intensified hydrogeomorphic and forest management scenarios reduced the magnitude and extent of biomass declines; however, they were unable to prevent overall declines in biomass or cause large shifts in tree species composition. Silver maple ( Acer saccharinum ) was projected to decrease in biomass, while increases in biomass were projected for several late-successional species including swamp white oak ( Quercus bicolor ). Among the factors influencing variation in biomass, forest management had the largest influence in the first 50 years of our simulations, but hydrological regime became the most important factor by the end of the century. Conclusions Our simulations indicate that management actions could play an important role in the conservation of floodplain forests, but their effectiveness will likely be limited if recent upward trends in flooding conditions in this system continue in the future. Thus, our results highlight both the potential benefits and limitations of management actions in the face of hydrologic change.

Iowa, Minnesota, Wisconsin↗
USGS2023

Evaluating the utility of effective breeding size estimates for monitoring sea lamprey spawning abundance

Sea lamprey ( Petromyzon marinus ) is an invasive species that is a significant source of mortality for populations of valued fish species across the North American Great Lakes. Large annual control programs are needed to reduce the species' impacts; however, the number of successfully spawning adults cannot currently be accurately assessed. In this study, effective breeding size ( N b ) and the minimum number of spawning adults ( N s ) were estimated for larval cohorts from 17 tributaries across all five Great Lakes using single nucleotide polymorphisms (SNP) genotyped via RAD-capture sequencing. Reconstructed larval pedigrees showed substantial variability in the size and number of full- and half-sibling groups, N b (<1–367), and N s (5–545) among streams. Generalized linear models examining the effects of stream environmental characteristics and aspects of sampling regimes on N b and N s estimates identified sample size, the number of sampling sites, and drainage area as important factors predicting N b and N s . Correlations between N b , N s , and capture–mark–recapture estimates of adult census size ( N c ) increased when streams with small sample sizes ( n < 50) were removed. Results collectively indicate that parameters estimated from genetic data can provide valuable information on spawning adults in a river system, especially if sampling regimes are standardized and physical stream covariates are included.

Ecology and Evolution↗
USGS2021

Assessment of multiple ecosystem metabolism methods in an estuary

Ecosystem metabolism is a key ecological attribute and easy to describe, but quantifying metabolism in estuaries is challenging. Properly scaling measurements through time and space requires consideration of hydrodynamics and mixing water from heterogeneous sources, making any estimation uncertain. Here, we compared three methods for modeling ecosystem metabolism in a portion of the Sacramento-San Joaquin Delta. Metabolism estimates based on laboratory incubations, continuous in situ buoys, and an oxygen isotope approach all indicated the system was net heterotrophic, and calculated rates were comparable in magnitude when averaged over the 2-month study. Daily metabolic rates based on in situ buoys were the most variable, likely due to horizontal and vertical advection and poor portrayal of the dissolved oxygen budget. After temporally averaging in situ buoy estimates or smoothing the dissolved oxygen time series for tidal effects, rates were more comparable to the other methods, which may be necessary to account for tidal advection and unbalanced contributions from subhabitats within the metabolic footprint. Incubation-based rates represent the finest temporal and spatial scale and only account for pelagic processes, which may explain why incubation-based rates were lower than the other two methods. The oxygen isotope method provided temporally and spatially integrated rates that were bracketed by the other two methods and may be a valuable tool in systems matching the model requirements. Because uncertainty arises in each method from a number of assumptions and scaling calculations, the resolution of metabolic rates in estuaries is likely coarser and more variable than in other aquatic ecosystems.

California↗
USGS2025

Sediment transport modeling in Lake Ontario embayments: Impacts on fish spawning substrates

Anthropogenically-driven sedimentation changes have had adverse environmental impacts on aquatic environments, including reductions in fish spawning habitats in embayments worldwide. This study was motivated by the need to understand the impacts of waves and current-driven sedimentation patterns on traditional spawning areas and their effect on sustainable fish reproduction in the Great Lakes. Coupled hydrodynamic, wave, and sediment transport models were developed within the Delft3D-SWAN (DS) framework to predict sedimentation patterns in two embayments in Lake Ontario, Sodus Bay and Chaumont Bay, that have been historically important fish spawning habitats. These bays, with distinct geomorphic characteristics and connectivity to Lake Ontario, offer an opportunity to examine how wind-generated waves and currents impact bed shear stress and subsequent sedimentation patterns. Areas experiencing greater wave-induced bed shear stress were identified and compared between the two bays. Simulated sediment transport patterns showed notable erosion near the lake-bay connections and increased deposition in the inner areas of both embayments. Observed Cisco embryo deposition corresponded to regions of high sheer stress and lower sedimentation, indicating physical attributes in those areas that are important for embryo survival. These results show where sediment settling and erosion occur in the two bays and highlight potential impacts on traditional spawning areas.

New York↗