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Bacteria form tellurium nanocrystals

A team of researchers have found two bacterial species that produce tellurium oxyanions as respiratory electron acceptors for growth, leaving elemental tellurium in the form of nanoparticles. The crystals from the two organisms exhibit distinctively different structures. Bacillus selenitireducens initially forms nanorods that cluster together to form rosettes. Sulfurospirillum barnesii forms irregularly-shaped nanospheres that coalesce into larger composite aggregates.

Industrial Bioprocessing↗

Mapping the changing landscape of fish-related journals: Setting a course for successful communication of scientific information

In the last 25 years, the number and scope of fish-related journals have changed. New and existing journals are increasingly specialized. Journals that are read and cited are changing because of differential accessibility via electronic databases. In this review, we examine shifts in numbers and foci of existing fish-related journals. We ask how these fish-related metrics differ across type of application, ecological system, taxa, and discipline. Although many journals overlap to some extent in content, there are distinct groups of journals for authors to consider. By systematically reviewing the focus of an individual manuscript, comparing it to the suite of journals available and examining the audience for the manuscript, we believe that authors can make informed decisions about which journals are most suitable for their work. Our goal here is to help authors find relevant journals and deliver scientific publications to the appropriate readership.

Fisheries↗

On-line access to geoscience bibliographic citations

On-line geoscience bibliographic citations and access points to citations are exponentially increasing as commercial, non-profit, and government agencies worldwide publish materials electronically. On-line bibliographic tools capture cited works, and open access content allows for freely obtained citations and documents. For this newsletter, citations from the numerous journals and books listed in the "Recent Papers" section of the EXPLORE newsletters from 2008-2011 were used to provide freely-accessible web sites to determine the availability of bibliographic information.

EXPLORE: Newsletter for the Association of Applied↗

The Restoration Rapid Assessment Tool: An Access/Visual Basic application

Managers of parks and natural areas are increasingly faced with difficult decisions concerning restoration of disturbed lands. Financial and workforce resources often limit these restoration efforts, and rarely can a manager afford to address all concerns within the region of interest. With limited resources, managers and scientists have to decide which areas will be targeted for restoration and the restoration treatments to use in these areas. A broad range of approaches are used to make such decisions, from well-researched expert opinions (Cipollini et al. 2005) to gut feeling, with variable degrees of input from site visits, data collection, and data analysis used to support the decision. A standardized approach including an analytical assessment of site characteristics based on the best information available, with a written or electronic record of all the steps taken along the way, would make comparisons among a group of sites easier and lend credibility through use of common, documented criteria at all sites. In response to these concerns, we have developed the Restoration Rapid Assessment Tool (RRAT). RRAT is based on field observations of key indicators of site degradation, stressors influencing the site, value of the site with respect to larger management objectives, likelihood of achieving the management goals, and logistical constraints to restoration. The purpose of RRAT is not to make restoration decisions or prescribe methods, but rather to ensure that a basic set of pertinent issues are considered for each site and to facilitate comparisons among sites. Several concepts have been central to the development of RRAT. First, the management goal (also known as desired future condition) of any site under evaluation should be defined before the field evaluation begins. Second, the evaluation should be based upon readily observable indicators so as to avoid cumbersome field methods. Third, the ease with which site stressors can be ameliorated must be factored into the evaluation. Fourth, intrinsic site value must be assessed independently of current condition. Finally, logistical considerations must also be addressed. Our initial focus has been on riparian areas because they are among the most heavily impacted habitat types, and RRAT indicators reflect this focus.

Report↗

Foraminiferal repopulation of the late Eocene Chesapeake Bay impact crater

The Chickahominy Formation is the initial postimpact deposit in the 85km-diameter Chesapeake Bay impact crater, which is centered under the town of Cape Charles, Virginia, USA. The formation comprises dominantly microfossil-rich, silty, marine clay, which accumulated during the final ~1.6myr of late Eocene time. At cored sites, the Chickahominy Formation is 16.8-93.7m thick, and fills a series of small troughs and subbasins, which subdivide the larger Chickahominy basin. Nine coreholes drilled through the Chickahominy Formation (five inside the crater, two near the crater margin, and two ~3km outside the crater) record the stratigraphic and paleoecologic succession of 301 indigenous species of benthic foraminifera, as well as associated planktonic foraminifera and bolboformids. Two hundred twenty of these benthic species are described herein, and illustrated with scanning electron photomicrographs. Absence of key planktonic foraminiferal and Bolboforma species in early Chickahominy sediments indicates that detrimental effects of the impact also disturbed the upper oceanic water column for at least 80-100kyr postimpact. After an average of ~73kyr of stressed, rapidly fluctuating paleoenvironments, which were destabilized by after-effects of the impact, most of the cored Chickahominy subbasins maintained stable, nutrient-rich, low-oxygen bottom waters and interstitial microhabitats for the remaining ~1.3myr of late Eocene time.

Maryl;Virginia↗

An exploration of Bureau of Reclamation approaches for managing conflict over diverging science

As a major institutional agent supplying Western water resources, the Bureau of Reclamation (Reclamation) provides important leadership, technical, and financial resources in water management, serving as the West's "water broker" (Bowersox 2000; Pisani 2003). In recent years, growing numbers of constituencies using water and the over-allocation of water resources have contributed to conflict over the resource in the American West (National Research Council 2004). Although the conflicts arise from many sources, one common theme is that Reclamation managers often must make decisions about water use and allocation when scientific studies provide uncertain or competing recommendations. We conducted a preliminary study of Reclamation water managers and water scientists to try to understand the approaches or techniques they use or consider useful for dealing with scientific conflicts over water allocation and how these compare to techniques found in the relevant literature. We report the results of (1) an electronic survey of Reclamation senior managers and (2) a panel discussion amongst Reclamation senior managers as to the current institutional capabilities for managing diverging scientific findings in water dispute resolution processes. We conclude with a discussion of the strengths and weaknesses of the different tools and techniques managers reported in the survey and in the panel discussion.

Technical Memorandum↗

Guidelines for conducting Smolt survival studies in the Columbia River

For more than a decade, investigators from different research groups in the Pacific Northwest have been using electronic tags to estimate survival of salmonid smolts as they migrate seaward past hydroelectric dams and through impoundments on the Snake and Columbia Rivers. Over the years, they have refined both analytical and field methods associated with such studies. In this collaborative paper, they synthesize years of experience to formulate a set of guidelines that may assist others with the design and execution of survival studies involving smolts during their migratory phase.

Report↗

Fragilariopsis diatom evolution in Pliocene and Pleistocene Antarctic shelf sediments

The late Pliocene – early Pleistocene sediment record in the AND-1B core from the McMurdo Sound, Ross Sea, Antarctica, displays a rich diversity and high abundance of diatoms, including several new morphologies within the genus Fragilariopsis. These new morphologies exhibit similarities to the extinct late Miocene/early Pliocene species Fragilariopsis aurica Gersonde and Fragilariopsis praecurta Gersonde, as well as to the modern sea ice-associated species Fragilariopsis ritscheri Hustedt and Fragilariopsis obliquecostata van Heurck. From the diverse morphologies present, we use light microscopy and scanning electron microscopy to identify and describe the characteristics of three new taxa, Fragilariopsis laqueata Riesselman, Fragilariopsis bohatyi Sjunneskog et Riesselman, and Fragilariopsis robusta Sjunneskog, which are common in the diatom-bearing intervals from ~3.2 to 1.95 Ma. Comparisons with extant and extinct species are made to assess possible environmental affinities, evolutionary relationships, and potential for future biostratigraphic utility. This complex of newmorphologies diversified as conditions cooled during the Pliocene, then went into decline as heavy sea ice conditions of the Pleistocene were established. Only the lineage of F. robusta appears to continue into the late Pleistocene, where it is interpreted to have evolved into F. obliquecostata.

Micropaleontology↗

Mineralogic and textural relations in deeply buried rocks of the Simpson Group (Middle Ordovician)--implications in diagenesis and petroleum geology

The mineral composition and petrography of sandstones, shales, carbonates, and intermediate lithologies were determined on 112 core samples of the Middle Ordovician Simpson Group in the Sunray DX Parker No. 1 Mazur well, Grady County, Oklahoma. Core was recovered from present depths of about 15,900-17,200 ft and included all or parts of the Bromide, Tulip Creek, McLish, Oil Creek, and Joins Formations. The bulk-rock mineral composition of Simpson Group rocks is diverse. The mean weighted composition of 50 sandstone samples is 66% quartz, 14% clay, and 18% carbonate, as determined by X-ray powder diffraction (XRD). Some sandstones from the Oil Creek and Tulip Creek Formations contain as much as 96% quartz. These quartz-rich sandstones were cemented early by silica. Feldspar averages 2%; some sandstones from the McLish Formation contain as much as 15% feldspar. Potassium feldspar is commonly more abundant than plagioclase; potassium feldspar overgrowths are found in some of the sandstones. Most of the shales are clay-rich and quartz-poor, averaging about 85% clay minerals, 7% quartz, and 3% feldspar, by weight, as determined by XRD. Carbonate, fluorapatite, and pyrite are present in variable amounts. Such high clay/quartz ratios are not characteristic of shales and suggest that silica has been expelled by diagenetic processes during burial. The main clay mineral in the Simpson Group at these depths is illite, although iron-rich chlorite is locally concentrated in sandstones. Illite typically makes up >90 wt. % of the clay minerals in sandstones and >95 wt. % of those in shale and carbonate. Total clay content, determined from XRD, correlates closely with total gamma-ray intensity from geophysical logs, because illite is the primary potassium-bearing phase in these deeply buried rocks. Therefore, the gamma-ray log is a good indicator of "shaliness" in potential Simpson reservoirs at similar depths. Much of the carbonate was introduced into the sandstones during burial as calcite, dolomite, or ankerite cement. Early iron-free calcite is commonly replaced by iron-bearing calcite, dolomite, or ankerite. Sandstones and carbonate rocks also contain rhombic dolomite. Many of the dolomite rhombs contain overgrowths of ferroan dolomite or ankerite, as evidenced by staining. Ankerite cementation is later and less selective than earlier dolomite and commonly replaces earlier carbonate or silica cements. Dolomite commonly replaces detrital clay and calcite. Spatial and textural relations suggest that the conversion of smectite to illite contributed, in part, to the formation of dolomite and ankerite cements. Scanning electron miscroscopy reveals that much of the diagenetic illite occurs as tabular fibers in pores or as pseudomorphic intergrowths after smectite. Most chlorite in sandstones is authigenic and occurs as a pore-lining cement or as a pseudomorphic replacement after kaolinite. Secondary porosity, formed mainly from the dissolution of intergranular carbonate cements, is best developed in sandstones from the Oil Creek and Tulip Creek Formations.

Oklahoma↗

Analysis of sedimentary facies and petrofacies of lower Morrowan-upper Chesterian sandstones, Anadarko Basin, Oklahoma

Three major lithofacies have been identified within the Morrow (Pennsylvanian) and Springer (Pennsylvanian-Mississippian) units, in core from 30 drill holes ranging from the Oklahoma Panhandle to the southwestern portion of the Anadarko basin. The study included inspection of ~6,500 ft of core, examination of ~100 thin sections, and a scanning-electron-microscope study of butts of the material used for thin-section preparation. The lithofacies identified are (1) fluvial-influenced coastal, which includes the deltaic facies described by Swanson (1979), (2) tidal-influenced nearshore, and (3) mixed, which shows mixed tidal and nontidal marine influence. Our interpretation is supported by the investigations of Moore (1979), Haiduk (1987), and Swanson (1979). The fluvial-influenced coastal facies is restricted to the northwestern (Panhandle) portion of the Anadarko basin.

Oklahoma↗

Mineral resource of the month: vanadium

Vanadium, the name of which comes from Vanadis, a goddess in Scandinavian mythology, is one of the most important ferrous metals. Vanadium has many uses, but the metal’s metallurgical applications, such as an alloying element in iron and steel, account for more than 85 percent of U.S. consumption. The dominant nonmetallurgical use of the metal is as a catalyst for the production of maleic anhydride and sulfuric acid, ceramics, vanadium chemicals and electronics.

Geotimes↗

Mineral resource of the month: germanium

The article provides information on germanium, an element with electrical properties between those of a metal and an insulator. Applications of germanium include its use as a component of the glass in fiber-optic cable, in infrared optics devices and as a semiconductor and substrate used in electronic and solar applications. Germanium was first isolated by German chemist Clemens Winkler in 1886 and was named after Winkler's native country. In 2008, the leading sources of primary germanium from coal or zinc include Canada, China and Russia.

Earth↗

Mineral resource of the month: cobalt

Cobalt is a metal used in numerous commercial, industrial and military applications. On a global basis, the leading use of cobalt is in rechargeable lithium-ion, nickel-cadmium and nickel-metal hydride battery electrodes. Cobalt use has grown rapidly since the early 1990s, with the development of new battery technologies and an increase in demand for portable electronics such as cell phones, laptop computers and cordless power tools.

Earth↗

Industrial garnet

The state of the global industrial garnet industry in 1999 is discussed. Industrial garnet mined in the U.S., which accounts for approximately one-third of the world's total, is usually a solid-solution of almandine and pyrope. The U.S. is the largest consumer of industrial garnet, using an estimated 47,800 st in 1999 as an abrasive and as a filtration medium in the petroleum industry, filtration plants, aircraft and motor vehicle manufacture, shipbuilding, wood furniture finishing operations, electronic component manufacture, ceramics manufacture, and glass production. Prices for crude concentrates ranged from approximately $50 to $110/st and refined garnet from $50 to $215/st in 1999, depending on type, source, quantity purchased, quality, and application.

Mining Engineering↗

Mineral of the month: manganese

Manganese is one of the most important ferrous metals and one of the few for which the United States is totally dependent on imports. It is a black, brittle element predominantly used in metallurgical applications as an alloying addition, particularly in steel and cast iron production, which together provide the largest market for manganese (about 83 percent). It is also used as an alloy with nonferrous metals such as aluminum and copper. Nonmetallurgical applications of manganese include battery cathodes, soft ferrite magnets used in electronics, micronutrients found in fertilizers and animal feed, water treatment chemicals, and a colorant for bricks and ceramics.

Geotimes↗

Mineral resource of the month: copper

The article provides information on copper and its various uses. It was the first metal used by humans and is considered as one of the materials that played an important role in the development of civilization. It is a major industrial metal because of its low cost, availability, electrical conductivity, high ductility and thermal conductivity. Copper has long been used in the circuitry of electronics and the distribution of electricity and is now being used in silicon-based computer chips, solar and wind power generation, and coinage.

Earth↗

Mineral resource of the month: cultured quartz crystal

The article presents information on cultured quartz crystals, a mineral used in mobile phones, computers, clocks and other devices controlled by digital circuits. Cultured quartz, which is synthetically produced in large pressurized vessels known as autoclaves, is useful in electronic circuits for precise filtration, frequency control and timing for consumer and military use. Several ingredients are used in producing cultured quartz, including seed crystals, lascas, a solution of sodium hydroxide or sodium carbonate, lithium salts and deionized water.

Earth↗

U.S. Geological Survey external quality-assurance project report to the National Atmospheric Deposition Program / National Trends Network and Mercury Deposition Network, 2007-08

The U.S. Geological Survey (USGS) used six distinct programs to provide external quality-assurance monitoring for the National Atmospheric Deposition Program / National Trends Network (NTN) and Mercury Deposition Network (MDN) during 2007-08. The field-audit program assessed the effects of onsite exposure, sample handling, and shipping on the chemistry of NTN samples, and a system-blank program assessed the same effects for MDN. Two interlaboratory-comparison programs assessed the bias and variability of the chemical analysis data from the Central Analytical Laboratory (CAL), Mercury (Hg) Analytical Laboratory (HAL), and 12 other participating laboratories. A blind-audit program was also implemented for the MDN to evaluate analytical bias in HAL total Hg concentration data. A co-located-sampler program was used to identify and quantify potential shifts in NADP data resulting from replacement of original network instrumentation with new electronic recording rain gages (E-gages) and prototype precipitation collectors. The results indicate that NADP data continue to be of sufficient quality for the analysis of spatial distributions and time trends of chemical constituents in wet deposition across the U.S. NADP data-quality objectives continued to be achieved during 2007-08. Results also indicate that retrofit of the NADP networks with the new E-gages is not likely to create step-function type shifts in NADP precipitation-depth records, except for sites where annual precipitation depth is dominated by snow because the E-gages tend to catch more snow than the original NADP rain gages. Evaluation of prototype precipitation collectors revealed no difference in sample volumes and analyte concentrations between the original NADP collectors and modified, deep-bucket collectors, but the Yankee Environmental Systems, Inc. (YES) collector obtained samples of significantly higher volumes and analyte concentrations than the standard NADP collector.

Report↗