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USGS2020

Coerced regimes: Management challenges in the Anthropocene

Management frequently creates system conditions that poorly mimic the conditions of a desirable self-organizing regime. Such management is ubiquitous across complex systems of people and nature and will likely intensify as these systems face rapid change. However, it is highly uncertain whether the costs (unintended consequences, including negative side effects) of management but also social dynamics can eventually outweigh benefits in the long term. We introduce the term “coerced regime” to conceptualize this management form and tie it into resilience theory. The concept encompasses proactive and reactive management to maintain desirable and mitigate undesirable regime conditions, respectively. A coerced regime can be quantified through a measure of the amount of management required to artificially maintain its desirable conditions. Coerced regimes comprise “ghosts” of self-sustaining desirable system regimes but ultimately become “dead regimes walking” when these regimes collapse as soon as management is discontinued. We demonstrate the broad application of coerced regimes using distinct complex systems of humans and nature (human subjects, aquatic and terrestrial environments, agriculture, and global climate). We discuss commonalities and differences between these examples to identify trade-offs between benefits and harms of management. The concept of coerced regimes can spur thinking and inform management about the duality of what we know and can envision versus what we do not know and therefore cannot envision: a pervasive sustainability conundrum as planet Earth swiftly moves toward a future without historical analogue

Ecology and Society↗

USGS2010

Climate-driven interannual variability in net ecosystem exchange in the Northern Great Plains grasslands

The Northern Great Plains grasslands respond differently under various climatic conditions; however, there have been no detailed studies investigating the interannual variability in carbon exchange across the entire Northern Great Plains grassland ecosystem. We developed a piecewise regression model to integrate flux tower data with remotely sensed data and mapped the 8-d and 500-m net ecosystem exchange (NEE) for the years from 2000 to 2006. We studied the interannual variability of NEE, characterized the interannual NEE difference in climatically different years, and identified the drought impact on NEE. The results showed that NEE was highly variable in space and time across the 7 yr. Specifically, NEE was consistently low (−35 to 322 g C·m −2 ·yr −1 ) with an average annual NEE of −2 ± 242 g C·m −2 ·yr −1 and a cumulative flux of −152 g C·m −2 . The Northern Great Plains grassland was a weak source for carbon during 2000–2006 because of frequent droughts, which strongly affected the carbon balance, especially in the Western High Plains and Northwestern Great Plains. Comparison of the NEE map with a drought monitor map confirmed a substantial correlation between drought and carbon dynamics. If drought severity or frequency increases in the future, the Northern Great Plains grasslands may become an even greater carbon source.

Northern Great Plains grasslands↗

USGS2003

A macroscopic approach to glacier dynamics

A simple approach to glacier dynamics is explored in which there is postulated to be a relationship between area and volume with three parameters: the time for area to respond to changes in volume, a thickness scale, and an area characterizing the condition of the initial state. This approach gives a good fit to the measurements of cumulative balance and area on South Cascade Glacier from 1970-97; the area time-scale is roughly 8 years, the thickness scale about 123 m, and the 1970 area roughly 4% larger than required for adjustment with volume. Combining this relationship with a version of mass continuity expressed in terms of area and volume produces a theory of glacier area and volume response to climate in which another time constant, the volume time-scale, appears. Area and volume both respond like a damped spring and mass system. The damping of the South Cascade response is approximately critical, and the volume time-scale is roughly 48 years, six times the area time-scale. The critically damped spring and mass analogy reproduces the time dependence predicted by the more complicated traditional theory of Nye.

Journal of Glaciology↗

USGS2014

The future of nearshore processes research

The nearshore is the transition region between land and the continental shelf including (from onshore to offshore) coastal plains, wetlands, estuaries, coastal cliffs, dunes, beaches, surf zones (regions of wave breaking), and the inner shelf (Figure ES-1). Nearshore regions are vital to the national economy, security, commerce, and recreation. The nearshore is dynamically evolving, is often densely populated, and is under increasing threat from sea level rise, long-term erosion, extreme storms, and anthropogenic influences. Worldwide, almost one billion people live at elevations within 10 m of present sea level. Long-term erosion threatens communities, infrastructure, ecosystems, and habitat. Extreme storms can cause billions of dollars of damage. Degraded water quality impacts ecosystem and human health. Nearshore processes, the complex interactions between water, sediment, biota, and humans, must be understood and predicted to manage this often highly developed yet vulnerable nearshore environment. Over the past three decades, the understanding of nearshore processes has improved. However, societal needs are growing with increased coastal urbanization and threats of future climate change, and significant scientific challenges remain. To address these challenges, members of academia, industry, and federal agencies (USGS, USACE, NPS, NOAA, FEMA, ONR) met at the “The Past and Future of Nearshore Processes Research: Reflections on the Sallenger Years and a New Vision for the Future” workshop to develop a nearshore processes research vision where societal needs and science challenges intersect. The resulting vision is comprised of three broad research themes: Long-term coastal evolution due to natural and anthropogenic processes: As global climate change alters the rates of sea level rise and potentially storm patterns and coastal urbanization increases over the coming decades, an understanding of coastal evolution is critical. Improved knowledge of long-term morphological, ecological, and societal processes and their interactions will result in an improved ability to simulate coastal change. This will enable proactive solutions for resilient coasts and better guidance for reducing coastal vulnerability. Extreme Events: Flooding, erosion, and the subsequent recovery: Hurricane Sandy caused flooding and erosion along hundreds of miles of shoreline, flooded New York City, and impacted communities and infrastructure. Overall U.S. coastal extreme event related economic losses have increased substantially. Furthermore, climate change may cause an increase in coastal extreme events and rising sea levels could increase the occurrence of extreme events. Addressing this research theme will result in an improved understanding of the physical processes during extreme events, leading to improved models of flooding, erosion, and recovery. The resulting societal benefit will be more resilient coastal communities. The physical, biological and chemical processes impacting human and ecosystem health: Nearshore regions are used for recreation, tourism, and human habitation, and provide habitat and valuable ecosystem services. These areas must be sustained for future generations, however overall coastal water quality is declining due to microbial pathogens, fertilizers, pesticides, and heavy metal contamination, threatening ecosystem and human health. To ensure sustainable nearshore regions, predictive real-time water- and sediment-based based pollutant modeling capabilities must be developed, which requires expanding our knowledge of the physics, chemistry, and biology of the nearshore. The resulting societal benefits will include better beach safety, healthier ecosystems, and improved mitigation and regulatory policies. The scientists and engineers of the U.S. nearshore community are poised to make significant progress on these research themes, which have significant societal impact. The U.S. nearshore community, including academic, government, and industry colleagues, recommends multi-agency investment into a coordinated development of observational and modeling research infrastructure to address these themes, as discussed in the whitepaper. The observational infrastructure should include development of new sensors and methods, focused observational programs, and expanded nearshore observing systems. The modeling infrastructure should include improved process representation, better model coupling, incorporation of data assimilation techniques, and testing of real-time models. The observations will provide test beds to compare and improve models.

Report↗

USGS2003

Lake Ontario: Food web dynamics in a changing ecosystem (1970-2000)

We examined stressors that have led to profound ecological changes in the Lake Ontario ecosystem and its fish community since 1970. The most notable changes have been reductions in phosphorus loading, invasion by Dreissena spp., fisheries management through stocking of exotic salmonids and control of sea lamprey ( Petromyzon marinus ), and fish harvest by anglers and double-crested cormorants ( Phalacrocorax auritus ). The response to these stressors has led to ( i ) declines in both algal photosynthesis and epilimnetic zooplankton production, ( ii ) decreases in alewife ( Alosa pseudoharengus ) abundance, ( iii ) declines in native Diporeia and lake whitefish ( Coregonus clupeaformis ), ( iv ) behavioral shifts in alewife spatial distribution benefitting native lake trout ( Salvelinus namaycush ), threespine stickleback ( Gasterosteus aculeatus ), and emerald shiner ( Notropis atherinoides ) populations, ( v ) dramatic increases in water clarity, ( vi ) predation impacts by cormorants on select fish species, and ( vii ) lake trout recruitment bottlenecks associated with alewife-induced thiamine deficiency. We expect stressor responses associated with anthropogenic forces like exotic species invasions and global climate warming to continue to impact the Lake Ontario ecosystem in the future and recommend continuous long-term ecological studies to enhance scientific understanding and management of this important resource.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2024

An intercomparison of DOC estimated from fDOM sensors in wildfire affected streams of the western United States

Wildfires in the western United States (US) have been demonstrated to affect water quality, including dissolved organic carbon (DOC), in streams. Elevated post-wildfire DOC concentration poses a potential risk to drinking water treatment systems. In-stream measurements of fluorescent dissolved organic matter (fDOM), a proxy for DOC, have shown potential to detect dynamic changes in DOC. High frequency monitoring of water temperature, turbidity, and fDOM was used in conjunction with discrete sampling during targeted storm events and at fixed intervals to estimate DOC in five western US streams following wildfires in 2020 and 2021 with the objective to characterise and compare responses to wildfire among sites. The elevated turbidity conditions typical after wildfire presented a challenge to fDOM measurements and there was a need to identify appropriate turbidity corrections at burned sites. A combination of established and novel methods corrected fDOM concentrations for turbidity effects up to 800 Formazin nephelometric units (FNU). Pre-wildfire high frequency water quality data in adjacent burned and unburned watersheds allowed for separation of climate effects on DOC at one of the sites. Hydrology, climate and landcover were more important drivers of post-wildfire DOC yield than wildfire characteristics. Seasonal patterns of DOC were unchanged by wildfire in snowmelt-driven watersheds. Large, transient spikes in DOC concentration following frontal and convective storms were observed post-wildfire at all burned sites, but not at the unburned site. These spikes often exceeded operational thresholds for drinking water treatment. This study highlights the ability to develop high frequency DOC estimates in surface waters up to 800 FNU using fDOM sensors and targeted storm sampling and emphasises the value of high frequency pre-wildfire data in adjacent burned and unburned watersheds for separating climate and wildfire effects.

California, Colorado, Montana, Oregon↗

USGS2011

Large shift in source of fine sediment in the upper Mississippi River

Although sediment is a natural constituent of rivers, excess loading to rivers and streams is a leading cause of impairment and biodiversity loss. Remedial actions require identification of the sources and mechanisms of sediment supply. This task is complicated by the scale and complexity of large watersheds as well as changes in climate and land use that alter the drivers of sediment supply. Previous studies in Lake Pepin, a natural lake on the Mississippi River, indicate that sediment supply to the lake has increased 10-fold over the past 150 years. Herein we combine geochemical fingerprinting and a suite of geomorphic change detection techniques with a sediment mass balance for a tributary watershed to demonstrate that, although the sediment loading remains very large, the dominant source of sediment has shifted from agricultural soil erosion to accelerated erosion of stream banks and bluffs, driven by increased river discharge. Such hydrologic amplification of natural erosion processes calls for a new approach to watershed sediment modeling that explicitly accounts for channel and floodplain dynamics that amplify or dampen landscape processes. Further, this finding illustrates a new challenge in remediating nonpoint sediment pollution and indicates that management efforts must expand from soil erosion to factors contributing to increased water runoff.

Environmental Science & Technology↗

USGS2012

Using age of colonizing douglas-fir for the dating of young geomorphic surfaces: a case study

Dating of many types of young (<500 year), dynamic, geomorphic landforms (e.g. mass-movement erosional tracks and deposits, alluvial terraces, flood plains, etc.) for purposes of hazard assessment and mitigation commonly requires greater dating precision than is available through radiocarbon dating or other methods. Ages of trees growing on landform surfaces have been used in a number of studies to estimate the time of landform creation or surface clearing, but the time lag between surface formation or disturbance and the reestablishment of trees can vary from 1 to more than 200 years (Desloges and Ryder 1990; Frenzen et al. 1988, 2005; Larsen and Bliss 1998; McCarthy and Luckman 1993; Sigafoos and Hendricks 1969; Winter et al. 2002). Appropriate lag times for selected tree species and for particular climatic and altitudinal ranges must be determined for the method to be useful.

Book chapter↗

USGS2006

2005 annual progress report: Elk and bison grazing ecology in the Great Sand Dunes complex of lands

In 2000 the U.S. Congress authorized the expansion of the former Great Sand Dunes National Monument by establishing a new Great Sand Dunes National Park and Preserve in its place, and establishing the Baca National Wildlife Refuge. The establishment of Great Sand Dunes National Park and Preserve and the new Baca National Wildlife Refuge in the San Luis Valley (SLV), Colorado was one of the most significant land conservation actions in the western U.S. in recent years. The action was a result of cooperation between the National Park Service (NPS), U.S. Fish and Wildlife Service (USFWS), Bureau of Land Management (BLM), U.S. Forest Service (USDA-FS), and The Nature Conservancy (TNC). The new national park, when fully implemented, will consist of 107,265 acres, the new national preserve 41,872 acres, and the new national wildlife refuge (USFWS lands) 92,180 acres (fig. 1). The area encompassed by this designation protects a number of natural wonders and features including a unique ecosystem of natural sand dunes, the entire watershed of surface and groundwaters that are necessary to preserve and recharge the dunes and adjacent wetlands, a unique stunted forest, and other valuable riparian vegetation communities that support a host of associated wildlife and bird species. When the National Park was initially established, there were concerns about overconcentrations and impacts on native plant communities of the unhunted segments of a large and possibly growing elk (Cervus elaphus) population. This led to the designation of the Preserve as a compromise solution, where the elk could be harvested. The Preserve Unit, however, will not address all the ungulate management challenges. In order to reduce the current elk population, harvests of elk may need to be aggressive. But aggressive special hunts of elk to achieve population reductions can result in elk avoidance of certain areas or elk seeking refuge in areas where they cannot be hunted, while removals of whole herd segments and abandonment or alterations of migration routes can occur (Smith and Robbins, 1994; Boyce and others, 1991). Elk may seek refuge from hunting in the newly expanded Park Unit and TNC lands where they might overconcentrate and impact unique vegetation communities. In these sites of refugia, or preferred loafing sites, elk and bison could accelerate a decline in woody riparian shrubs and trees. This decline may also be due to changes in hydrology, climatic, or dunal processes, but ungulate herbivory might exacerbate the effects of those processes. To address the questions and needs of local resource managers, a multi-agency research project was initiated in 2005 to study the ecology, forage relations, and habitat relations of elk and bison in the Great Sand Dunes–Sangre de Cristo–Baca complex of lands. Meetings and discussions of what this research should include were started in 2001 with representatives from NPS, USFWS, TNC, the Colorado Division of Wildlife (CDOW), and USDA-FS/BLM. The final study plan was successfully funded in 2004 with research scheduled to start in 2005. The research was designed to encompass three major study elements: (1) animal movements and population dynamics, (2) vegetation and nutrient effects from ungulate herbivory, and (3) development of ecological models, using empirical data collected from the first two components, that will include estimates of elk carrying capacity and management scenarios for resource managers.

Colorado↗

USGS2013

Adaptive harvest management for the Svalbard population of pink-footed geese: cooperator report

This document describes progress to date on the development of a harvest‐management strategy for maintaining pink‐footed goose abundance near their target level by providing for sustainable harvests in Norway and Denmark. Many goose populations in western Europe have increased dramatically in recent decades. The Svalbard population of pink‐footed geese (Anser brachyrhynchus) is a good example, increasing from about 10 thousand individuals in the early 1960’s to roughly 80 thousand today. Although these geese are a highly valued resource, the growing numbers of geese are causing agricultural conflicts in wintering and staging areas. The African‐Eurasian Waterbird Agreement (AEWA; http://www.unep‐aewa.org/) calls for means to manage populations which cause conflicts with certain human economic activities. We compiled relevant demographic and weather data and specified an annual‐cycle model for pink-footed geese that reconciles the different dates of monitoring activities and the timing of harvest-management decisions. We then developed dynamic models for survival and reproductive processes and parameterized them using available data. By combining varying hypotheses about survival and reproduction, we developed a suite of nine models that represent a wide range of possibilities concerning the extent to which demographic rates are density dependent or independent, and the extent to which spring temperatures are important. These nine models varied significantly in their predictions of the harvest required to stabilize current population size, ranging from a low of about 500 to a high of about 17 thousand. For comparison, the harvest in Norway and Denmark was about 11 thousand in 2011 and the population increased from 70 to 80 thousand. We relied on the passive form of adaptive management in formulating a harvest strategy. In passive adaptive management, alternative population models and their associated weights of evidence are explicitly considered in the development of an optimal harvest strategy. Unlike active adaptive management, however, there is no explicit consideration of how harvest management actions could reduce uncertainty as to the most appropriate model of population dynamics. In optimizing a harvest strategy, we assumed equal probabilities for all nine models and assumed relatively course control over harvest. We used a management objective that seeks to maximize sustainable harvest, but avoids harvest decisions that are expected to result in a subsequent population size different than the population goal of 60 thousand. Optimal harvest strategies were calculated using stochastic dynamic programming, and Monte Carlo simulations were used to investigate expected strategy performance. The optimal passive adaptive‐management strategy is expected to maintain mean population size near 60 thousand, regardless of the most appropriate model. However, mean harvest rates and harvests varied substantially depending on the most appropriate model of population dynamics. With an average number of days above freezing in May in Svalbard, optimal harvest rates (i.e., the proportion of the population to be harvested in autumn) increase rapidly once there are more than about 50 thousand birds in the population. Generally, optimal harvests were on the order of 10 – 20 thousand for population sizes > 60 thousand, and 0 – 5 thousand for population sizes < 60 thousand. For the observations of young of 15.4 thousand and adults of 54.6 thousand in autumn 2010, and 10 days above freezing in May 2011 (a relatively warm spring compared to the average of about 7), the optimal harvest rate in autumn of 2011 would have been 0.16, or a harvest of about 14 thousand. Based on the optimal strategy, hunting‐season closures would be required as the number of adults in the autumn population falls below about 52 thousand, regardless of the number of young in the population. As the number of adults and young decrease, the number of warm days in May required to keep the hunting season open increases. We also investigated the ability of the optimal strategy to stabilize the population at around 60 thousand birds, assuming varying values of the maximum harvest rate that could be implemented. Harvest strategies that contained a maximum harvest rate of 0.16 (equivalent to a harvest of about 17 thousand) were effective at stabilizing the population at 60 thousand within 4‐5 years, regardless of climate scenario. Harvest strategies with a maximum harvest rate of 0.12 (harvest ≈ 13 thousand) were also able to stabilize the population near 60 thousand, although it took more time. Harvest strategies with a maximum harvest rate of 0.08 (harvest ≈ 8 thousand) were unsuccessful at stabilizing the population at 60 thousand. Continued monitoring of the pink‐footed goose population on an annual basis is critical to an informed harvest management strategy. At a minimum, the ground census in November should be continued to determine population size and proportion of young. Continued estimates of harvest from Norway and Denmark are also necessary to help judge the credibility of the alternative population models. However, an adaptive management process that relies on periodic updating of model weights will depend on acquiring either estimates of the realized harvest rate of adults or the age composition of the harvest. We also recommend that a census conducted during spring migration be operationalized, and that estimates of survival based on mark‐recapture data be updated. Finally, the International Working Group has expressed a desire to adopt a three‐year cycle of decision making related to the regulation of pink‐footed goose harvests. The idea is that once a target harvest level is adopted, it would remain in place for three years, after which time population status would be assessed and a potentially new management action chosen. We have developed a preliminary framework to implement a three‐year cycle using stochastic dynamic programming, and we hope to have it fully operational later this year . We note, however, that application of this 3‐year framework will still require annual resource monitoring and assessments to facilitate learning, and to allow managers the opportunity to respond to any unforeseen change in resource conditions.

Report↗

USGS2019

Geographic variation in the intensity of warming and phenological mismatch between Arctic shorebirds and invertebrates

Responses to climate change can vary across functional groups and trophic levels, leading to a temporal decoupling of trophic interactions or ‘phenological mismatches.’ Despite a growing number of single-species studies that identified phenological mismatches as a nearly universal consequence of climate change, we have a limited understanding of the spatial variation in the intensity of this phenomenon nor what influences this variation. In this study, we tested for geographic patterns in phenological mismatches between six species of shorebirds and their invertebrate prey at ten sites spread across ~13º latitude and ~84º longitude in the Arctic over three years. At each site, we quantified the phenological mismatch between shorebirds and their invertebrate prey at: 1) an individual nest level, as the difference in days between the seasonal peak in food and the peak demand by chicks, and 2) a population level, as the overlapped area under fitted curves for total daily biomass of invertebrates and dates of the peak demand by chicks. We tested whether the intensity of past climatic change observed at each site corresponded with the extent of phenological mismatch and used Structural Equation Modeling to test for causal relationships among: 1) environmental factors, including geographic location and current climatic conditions, 2) the timing of invertebrate emergence and the breeding phenology of shorebirds, and 3) the phenological mismatch between the two trophic levels. The extent of phenological mismatch varied more among different sites than among different species within each site. A greater extent of phenological mismatch at both the individual-nest and population-levels coincided with changes in the timing of snowmelt as well as the potential dissociation of long-term snow phenology from changes in temperature. The timing of snowmelt also affected the shape of the food and demand curves, which determined the extent of phenological mismatch at the population level. Finally, we found larger mismatches at more easterly longitudes, which may be affecting the population dynamics of shorebirds, as two of our study species show regional population declines in only the eastern part of their range. This suggests that phenological mismatches may be resulting in demographic consequences for arctic-nesting birds.

Alaska↗

USGS2015

Geomorphology, active tectonics, and landscape evolution in the Mid-Atlantic region

In 2014, the geomorphology community marked the 125th birthday of one of its most influential papers, “The Rivers and Valleys of Pennsylvania” by William Morris Davis. Inspired by Davis’s work, the Appalachian landscape rapidly became fertile ground for the development and testing of several grand landscape evolution paradigms, culminating with John Hack’s dynamic equilibrium in 1960. As part of the 2015 GSA Annual Meeting, the Geomorphology, Active Tectonics, and Landscape Evolution field trip offers an excellent venue for exploring Appalachian geomorphology through the lens of the Appalachian landscape, leveraging exciting research by a new generation of process-oriented geomorphologists and geologic field mapping. Important geomorphologic scholarship has recently used the Appalachian landscape as the testing ground for ideas on long- and short-term erosion, dynamic topography, glacial-isostatic adjustments, active tectonics in an intraplate setting, river incision, periglacial processes, and soil-saprolite formation. This field trip explores a geologic and geomorphic transect of the mid-Atlantic margin, starting in the Blue Ridge of Virginia and proceeding to the east across the Piedmont to the Coastal Plain. The emphasis here will not only be on the geomorphology, but also the underlying geology that establishes the template and foundation upon which surface processes have etched out the familiar Appalachian landscape. The first day focuses on new and published work that highlights Cenozoic sedimentary deposits, soils, paleosols, and geomorphic markers (terraces and knickpoints) that are being used to reconstruct a late Cenozoic history of erosion, deposition, climate change, and active tectonics. The second day is similarly devoted to new and published work documenting the fluvial geomorphic response to active tectonics in the Central Virginia seismic zone (CVSZ), site of the 2011 M 5.8 Mineral earthquake and the integrated record of Appalachian erosion preserved on the Coastal Plain. The trip concludes on Day 3, joining the Kirk Bryan Field Trip at Great Falls, Virginia/ Maryland, to explore and discuss the dramatic processes of base-level fall, fluvial incision, and knickpoint retreat.

Virginia↗

USGS2021

Biotic vs abiotic controls on temporal sensitivity of primary production to precipitation across North American drylands

Dryland net primary productivity (NPP) is sensitive to temporal variation in precipitation (PPT), but the magnitude of this ‘temporal sensitivity’ varies spatially. Hypotheses for spatial variation in temporal sensitivity have often emphasized abiotic factors, such as moisture limitation, while overlooking biotic factors, such as vegetation structure. We tested these hypotheses using spatiotemporal models fit to remote-sensing data sets to assess how vegetation structure and climate influence temporal sensitivity across five dryland ecoregions of the western USA. Temporal sensitivity was higher in locations and ecoregions dominated by herbaceous vegetation. By contrast, much less spatial variation in temporal sensitivity was explained by mean annual PPT. In fact, ecoregion-specific models showed inconsistent associations of sensitivity and PPT; whereas sensitivity decreased with increasing mean annual PPT in most ecoregions, it increased with mean annual PPT in the most arid ecoregion, the hot deserts. The strong, positive influence of herbaceous vegetation on temporal sensitivity indicates that herbaceous-dominated drylands will be particularly sensitive to future increases in precipitation variability and that dramatic changes in cover type caused by invasions or shrub encroachment will lead to changes in dryland NPP dynamics, perhaps independent of changes in precipitation.

New Phytologist↗

USGS2023

Practical guide to measuring wetland carbon pools and fluxes

Wetlands cover a small portion of the world, but have disproportionate influence on global carbon (C) sequestration, carbon dioxide and methane emissions, and aquatic C fluxes. However, the underlying biogeochemical processes that affect wetland C pools and fluxes are complex and dynamic, making measurements of wetland C challenging. Over decades of research, many observational, experimental, and analytical approaches have been developed to understand and quantify pools and fluxes of wetland C. Sampling approaches range in their representation of wetland C from short to long timeframes and local to landscape spatial scales. This review summarizes common and cutting-edge methodological approaches for quantifying wetland C pools and fluxes. We first define each of the major C pools and fluxes and provide rationale for their importance to wetland C dynamics. For each approach, we clarify what component of wetland C is measured and its spatial and temporal representativeness and constraints. We describe practical considerations for each approach, such as where and when an approach is typically used, who can conduct the measurements (expertise, training requirements), and how approaches are conducted, including considerations on equipment complexity and costs. Finally, we review key covariates and ancillary measurements that enhance the interpretation of findings and facilitate model development. The protocols that we describe to measure soil, water, vegetation, and gases are also relevant for related disciplines such as ecology. Improved quality and consistency of data collection and reporting across studies will help reduce global uncertainties and develop management strategies to use wetlands as nature-based climate solutions.

Wetlands↗

USGS2023

Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis

Spiny lizards (genus Sceloporus ) have long served as important systems for studies of behavior, thermal physiology, dietary ecology, vector biology, speciation, and biogeography. The western fence lizard, Sceloporus occidentalis , is found across most of the major biogeographical regions in the western United States and northern Baja California, Mexico, inhabiting a wide range of habitats, from grassland to chaparral to open woodlands. As small ectotherms, Sceloporus lizards are particularly vulnerable to climate change, and S. occidentalis has also become an important system for studying the impacts of land use change and urbanization on small vertebrates. Here, we report a new reference genome assembly for S. occidentalis , as part of the California Conservation Genomics Project (CCGP). Consistent with the reference genomics strategy of the CCGP, we used Pacific Biosciences HiFi long reads and Hi-C chromatin-proximity sequencing technology to produce a de novo assembled genome. The assembly comprises a total of 608 scaffolds spanning 2,856 Mb, has a contig N50 of 18.9 Mb, a scaffold N50 of 98.4 Mb, and BUSCO completeness score of 98.1% based on the tetrapod gene set. This reference genome will be valuable for understanding ecological and evolutionary dynamics in S. occidentalis , the species status of the California endemic island fence lizard ( S. becki ), and the spectacular radiation of Sceloporus lizards.

California↗

USGS1998

On the influence of biomass burning on the seasonal CO2 signal as observed at monitoring stations

We investigated the role of biomass burning in simulating the seasonal signal in both prognostic and diagnostic analyses. The prognostic analysis involved the High-Resolution Biosphere Model, a prognostic terrestrial biosphere model, and the coupled vegetation fire module, which together produce a prognostic data set of biomass burning. The diagnostic analysis involved the Simple Diagnostic Biosphere Model (SDBM) and the Hao and Liu [1994] diagnostic data set of biomass burning, which have been scaled to global 2 and 4 Pg C yr −1 , respectively. The monthly carbon exchange fields between the atmosphere and the biosphere with a spatial resolution of 0.5° × 0.5°, the seasonal atmosphere-ocean exchange fields, and the emissions from fossil fuels have been coupled to the three-dimensional atmospheric transport model TM2. We have chosen eight monitoring stations of the National Oceanic and Atmospheric Administration network to compare the predicted seasonal atmospheric CO 2 signals with those deduced from atmosphere-biosphere carbon exchange fluxes without any contribution from biomass burning. The prognostic analysis and the diagnostic analysis with global burning emissions of 4 Pg C yr −1 agree with respect to the change in the amplitude of the seasonal CO 2 concentration introduced through biomass burning. We find that the seasonal CO 2 signal at stations in higher northern latitudes (north of 30°N) is marginally influenced by biomass burning. For stations in tropical regions an increase in the CO 2 amplitude of more than 1 ppmv (up to 50% with respect to the observed trough to peak amplitude) has been calculated. Biomass burning at stations farther south accounts for an increase in the CO 2 amplitude of up to 59% (0.6 ppmv). A change in the phase of the seasonal CO 2 signal at tropical and southern stations has been shown to be strongly influenced by the onset of biomass burning in southern tropical Africa and America. Comparing simulated and observed seasonal CO 2 signals, we find higher discrepancies at southern tropical stations if biomass burning emissions are included. This is caused by the additional increase in the amplitude in the prognostic analysis and a phase shift in a diagnostic analysis. In contrast, at the northern tropical stations biomass burning tends to improve the estimates of the seasonal CO 2 signal in the prognostic analysis because of strengthening of the amplitude. Since the SDBM predicts the seasonal CO 2 signal reasonably well for the northern hemisphere tropical stations, no general improvement of the fit occurs if biomass burning emissions are considered.

Global Biogeochemical Cycles↗

USGS2018

Remaining populations of an upland stream fish persist in refugia defined by habitat features at multiple scales

Aim Conserving stream biota could require strategies that preserve habitats conveying resistance to ecological impacts of changing land use and climate. Retrospective analyses of species’ responses to anthropogenic disturbances can inform such strategies. We developed a hierarchical framework to contrast environmental conditions underlying persistence versus extirpation of an imperilled stream fish, Candy Darter ( Etheostoma osburni ), over decades of changing land use. The decline of E. osburni may broadly represent the challenge of conserving sensitive freshwater species in intensively used upland environments. Location New River drainage, Appalachian Mountains, USA. Methods We surveyed fish and habitat in historically occupied sites to identify population refugia, and used multivariate and spatial analyses to address three questions: (a) what are the environmental correlates of refugia? (b) are the pathways by which land use impacts instream habitat constrained by catchment- and/or segment-scale features? and (c) are E. osburni distributional dynamics spatially structured and explained by fine sediment and warm stream temperatures? Results We confirmed a recently localized distribution similar to other upland species, marked by at least seven extirpations from streams throughout E. osburni 's southern range. Catchment-scale features primarily constrained land use and finer-scale habitat, leading to either extirpations or population-supporting refugia defined by features at multiple scales. Refugium habitats contained cooler temperatures and less fine sediment. Rare mismatches between persistence and habitat suitability were explained by network location , suggesting unmeasured environmental gradients and/or dispersal contributed to distributional dynamics. Main conclusions We provided insight at multiple spatial scales into how aquatic species’ distributions become fragmented and localized. Our results demonstrate that natural landscape heterogeneity imparts spatially variable resistance of sensitive species to intensive land uses. By recognizing the scale-specific features that buffer populations from extirpation, conservation strategies could be tailored to protect naturally occurring refugium habitats and focus restoration in systems where such habitats are broadly lacking.

Virginia, West Virginia↗

USGS1999

200,000 years of climate change recorded in eolian sediments of the High Plains of eastern Colorado and western Nebraska

Loess and eolian sand cover vast areas of the western Great Plains of Nebraska, Kansas and Colorado (Fig. 1). In recent studies of Quaternary climate change, there has been a renewed interest in loess and eolian sand. Much of the attention now given to loess stems from new studies of long loess sequences that contain detailed records of Quaternary glacial-interglacial cycles, thought to be a terrestrial equivalent to the foraminiferal oxygen isotope record in deep-sea sediments (Fig. 2). Loess is also a direct record of atmospheric circulation, and identification of loess paleowinds in the geologic record can test atmospheric general circulation models. Until recently, eolian sand on the Great Plains had received little attention from Quaternary geologists. The past decade has seen a proliferation of studies of Great Plains dune sands, and many studies, summarized below, indicate that landscapes characterized by eolian sand have had dynamic histories. On this field trip, we will visit some key eolian sand and loess localities in eastern Colorado and southwestern Nebraska (Fig. 1). Stratigraphic studies at some of these localities have been conducted for more than 50 years, but others have been systematically studied only in the past few years. Many of the data which appear in this guidebook have been derived from previous studies (Swinehart and Diffendal, 1990; Madole, 1994; Loope and others, 1995; Maat and Johnson, 1996; Muhs and others, 1996, 1997a, 1999; Mason and others, 1997; Aleinikoff and others, 1999), but some are presented here for the first time.

Colorado;Nebraska↗