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At least 1,459 records · Page 81Linked to original sources
USGS2015

Prevalence of toxin-producing Clostridium botulinum associated with the macroalga Cladophora in three Great Lakes: Growth and management

The reemergence of avian botulism caused by Clostridium botulinum type E has been observed across the Great Lakes in recent years. Evidence suggests an association between the nuisance algae, Cladophora spp., and C. botulinum in nearshore areas of the Great Lakes. However, the nature of the association between Cladophora and C. botulinum is not fully understood due, in part, to the complex food web interactions in this disease etiology. In this study, we extensively evaluated their association by quantitatively examining population size and serotypes of C. botulinum in algal mats collected from wide geographic areas in lakes Michigan, Ontario, and Erie in 2011–2012 and comparing them with frequencies in other matrices such as sand and water. A high prevalence (96%) of C. botulinum type E was observed in Cladophora mats collected from shorelines of the Great Lakes in 2012. Among the algae samples containing detectable C. botulinum , the population size of C. Botulinum type E was 10 0 –10 4 MPN/g dried algae, which was much greater (up to 10 3 fold) than that found in sand or the water column, indicating that Cladophora mats are sources of this pathogen. Mouse toxinantitoxin bioassays confirmed that the putative C. botulinum belonged to the type E serotype. Steam treatment was effective in reducing or eliminating C. botulinum type E viable cells in Cladophora mats, thereby breaking the potential transmission route of toxin up to the food chain. Consequently, our data suggest that steam treatment incorporated with a beach cleaning machine may be an effective treatment of Cladophora -borne C. botulinum and may reduce bird mortality and human health risks.

Lake Erie, Lake Michigan, Lake Ontario↗
USGS2024

Reduced freshwater mussel juvenile production as a result of agricultural and urban contaminant mixture exposures

Freshwater mussels provide invaluable ecological services but are threatened by habitat alteration, poor water quality, invasive species, climate change, and contaminants, including contaminants of emerging concern (CECs). Contaminants of emerging concerns are well documented in aquatic environments, including the Great Lakes Basin, but limited information is available on how environmentally relevant mixtures affect freshwater mussel biology throughout their varied life stages. Our main goal was to assess mussels' reproductive output in response to exposure to agricultural and urban CEC mixtures during glochidial development through juvenile transformation and excystment focusing on how exposure duration and treatment affect: (1) the number of glochidia prematurely released by brooding females, (2) glochidial transformation through host-fish excystment, and (3) the number of fully metamorphosed juveniles able to continue the lifecycle. Mussels and host fish were exposed to either a control water (CW), control ethanol (CE), agriculture CEC mixture (AM), or urban CEC mixture (UM) for 40 and 100 days. We found no effect from treatment or exposure duration on the number of glochidia prematurely released. Fewer partially and fully metamorphosed AM juveniles were observed during the 100-day exposure, compared with the 40-day. During the 40-day exposure, CW produced more fully metamorphosed individuals compared with CE and UM, but during the 100-day exposure AM produced more fully metamorphosed individuals compared with the CW. There was reduction in fully metamorphosed juveniles compared with partially metamorphosed for CE and UM during the 40-day exposure, as well as in the CW during the 100-day exposure. These results will be important for understanding how mussel populations are affected by CEC exposure. The experiments also yielded many insights for laboratory toxicology exposure studies.

Environmental Toxicology and Chemistry↗
USGS2020

Terrestrial and semi-aquatic scavengers on invasive Pacific pink salmon (Oncorhynchus gorbuscha) carcasses in a riparian ecosystem in northern Norway.

Pacific pink salmon ( Oncorhynchus gorbuscha ) invasions, thought to originate from populations introduced and established in Russia, occurred along the Norwegian coast in 2017 and 2019. Despite several thousand pink salmon entering and establishing in northern Norwegian rivers, current understanding of the ecological effect of the species in northern Europe is limited. Scavengers feeding on pacific salmon carcasses are important vectors for the transport of marine derived energy and nutrients to terrestrial ecosystems in the Pacific Northwest, North America, where the salmon naturally occur. However the role of terrestrial and aquatic scavengers in the consumption and removal of pink salmon beyond the salmon’s native range is unknown. This study has identified terrestrial and sub-aquatic vertebrate scavengers on pink salmon carcasses in a sub-arctic river in northern Norway. Avian scavengers filmed by a camera placed near sites baited with pink salmon carcasses included the Eurasian magpie ( Pica pica ), hooded crow ( Corvus cornix ), common raven ( Corvus corax ), the European herring gull ( Larus argentatus ), redwing ( Turdus iliacus ) and goosander ( Mergus merganser ). However, the largest carcass weight was removed by red foxes ( Vulpes vulpes ). Carcasses entering Vesterelv River in 2019 were estimated to provide energy and nutrients to the river ecosystem an order of magnitude lower than in the Pacific Northwest. This study provides some of the first information in northern Europe on the mechanisms and quantification of energy and nutrient transfer from the ocean to riparian environments via introduced Pacific pink salmon. Results help to begin to determine the ecological effect of pink salmon and the development of appropriate management strategies.

Finnmark, Vesterelv↗
USGS2023

A nitrifier-enriched microbial community contributes to the degradation of environmental DNA

Environmental DNA (eDNA) surveys are a promising alternative to traditional monitoring of invasive species, rare species, and biodiversity. Detecting organism-specific eDNA reduces the need to collect physical specimens for population estimates, and the high sensitivity of eDNA assays may improve detection of rare or cryptic species. However, correlating estimated concentrations of eDNA with species abundance can be difficult due to the many abiotic and biotic factors that influence eDNA persistence and degradation. Here, we assessed the impact of a nitrifier-enriched microbial (NEM) community on the persistence and degradation of Hypophthalmichthys molitrix (silver carp) milt eDNA using experimental aquatic mesocosms and a quantitative PCR approach. The NEM community was cultured from combined sediment and water samples collected from a golf course pond in Columbia, Missouri (USA), and experiments were conducted in the dark at 22°C. We found that the NEM community transformed organic nitrogen from silver carp milt to measurable amounts of nitrate, both in the presence and absence of ammonia nitrogen. Additionally, regardless of ammonia availability, milt eDNA followed a one-phase exponential decay pattern after an initial 24-h plateau in the presence of the NEM community. However, milt eDNA had a shorter half-life (12.5 h) in the absence of exogenous ammonia compared to when ammonia was present (15 h). In sterile mesocosms, eDNA was stable during the 72-h experiment. Together, these results suggest that the presence of microorganisms is necessary for short-term degradation of eDNA. Furthermore, nitrifying microbial communities, which are ubiquitous in most soil and water environments, could limit eDNA persistence in the environment. Understanding the contributions of environmental microbial communities will allow more confidence in sampling design and eDNA result interpretations for biodiversity management applications.

Environmental DNA↗
USGS2020

Mixed organic and inorganic tapwater exposures and potential effects in greater Chicago area, USA

Safe drinking water at the point of use (tapwater, TW) is a public-health priority. TW exposures and potential human-health concerns of 540 organics and 35 inorganics were assessed in 45 Chicago area United States (US) homes in 2017. No US Environmental Protection Agency (EPA) enforceable Maximum Contaminant Level(s) (MCL) were exceeded in any residential or water treatment plant (WTP) pre-distribution TW sample. Ninety percent (90%) of organic analytes were not detected in treated TW, emphasizing the high quality of the Lake Michigan drinking-water source and the efficacy of the drinking-water treatment and monitoring. Sixteen (16) organics were detected in >25% of TW samples, with about 50 detected at least once. Low-level TW exposures to unregulated disinfection byproducts (DBP) of emerging concern, per/polyfluoroalkyl substances (PFAS), and three pesticides were ubiquitous. Common exceedances of non-enforceable EPA MCL Goal(s) (MCLG) of zero for arsenic [As], lead [Pb], uranium [U]), bromodichloromethane, and tribromomethane suggest potential human health concerns and emphasize the continuing need for improved understanding of cumulative effects of low-concentration mixtures on vulnerable sub-populations. Because DBP dominated TW organics, residential TW concentrations are potentially predictable with expanded pre-distribution DBP monitoring. However, several TW chemicals, notably Pb and several infrequently detected organic compounds, were not readily explained by pre distribution samples, illustrating the need for continued broad inorganic/organic TW characterization to support consumer assessment of acceptable risk and point-of-use treatment options.

Illinois↗
USGS2010

Extended abstracts from the Coastal Habitats in Puget Sound (CHIPS) 2006 Workshop

Puget Sound is the second largest estuary in the United States. Its unique geology, climate, and nutrient-rich waters produce and sustain biologically productive coastal habitats. These same natural characteristics also contribute to a high quality of life that has led to a significant growth in human population and associated development. This population growth, and the accompanying rural and urban development, has played a role in degrading Puget Sound ecosystems, including declines in fish and wildlife populations, water-quality issues, and loss and degradation of coastal habitats. In response to these ecosystem declines and the potential for strategic large-scale preservation and restoration, a coalition of local, State, and Federal agencies, including the private sector, Tribes, and local universities, initiated the Puget Sound Nearshore Ecosystem Restoration Project (PSNERP). The Nearshore Science Team (NST) of PSNERP, along with the U.S. Geological Survey, developed a Science Strategy and Research Plan (Gelfenbaum and others, 2006) to help guide science activities associated with nearshore ecosystem restoration. Implementation of the Research Plan includes a call for State and Federal agencies to direct scientific studies to support PSNERP information needs. In addition, the overall Science Strategy promotes greater communication with decision makers and dissemination of scientific results to the broader scientific community. On November 14–16, 2006, the U.S. Geological Survey sponsored an interdisciplinary Coastal Habitats in Puget Sound (CHIPS) Research Workshop at Fort Worden State Park, Port Townsend, Washington. The main goals of the workshop were to coordinate, integrate, and link research on the nearshore of Puget Sound. Presented research focused on three themes: (1) restoration of large river deltas; (2) recovery of the nearshore ecosystem of the Elwha River; and (3) effects of urbanization on nearshore ecosystems. The more than 35 presentations covered a wide range of ongoing inter-disciplinary research, including studies of sediment geochemistry of aquatic environments, sediment budgets, tracking fish pathways, expansion of invasive forams, beach and nearshore sedimentary environments, using influence diagrams as a decision support tool, forage fish, submarine groundwater, and much, much more. The primary focus within these themes was on developing information on the physical, chemical, and biological processes, as well as the human dimensions, associated with the restoration or rehabilitation of the nearshore environment. The workshop was an excellent opportunity for USGS scientists and collaborators who are working on Puget Sound coastal habitats to present their preliminary findings, discuss upcoming research, and to identify opportunities for interdisciplinary collaboration. A compilation of extended abstracts from workshop participants, this proceedings volume serves as a useful reference for attendees of the workshop and for those unable to attend. Taken together, the abstracts in this report provide a view of the current status of USGS multidisciplinary research on Puget Sound coastal habitats.

Open-File Report↗
USGS1999

Freshwater discharge to Florida Bay

The South Florida Ecosystem Program is a collaborative effort by Federal agencies, working with State and local agencies, to help resolve land-use demands and water-supply issues in south Florida. The role of the U.S. Geological Survey in the program is to provide scientific insight into south Florida's hydrology and geology, which are an integral part of the fragile ecosystems of the Everglades, Florida Bay, and the Florida Keys. Historical changes in water-management practices to accommodate a large and rapidly growing urban population along the Atlantic coast, as well as intensive agricultural activities, have resulted in a highly managed hydrologic system with canals, levees, and pumping stations. These structures have altered the hydrology of the Everglades ecosystem, including Florida Bay. Currently, there are plans to change the quantity of water delivered to Everglades National Park and Florida Bay to restore the natural flow of the system. Florida Bay, home to several endangered species, is a valuable breeding ground for marine life and an important recreational and sport fishing area. Florida Bay encompasses about 850 square miles in total area with an average depth of less than 3.5 feet. It is bordered by the mainland portion of Everglades National Park to the north, the Florida Keys to the east and south, and is open to the Gulf of Mexico to the west. During the last decade, Florida Bay has experienced algal blooms and seagrass die-offs which are signals of ecological deterioration that has been attributed to an increase in salinity and nutrient content of bay waters. Salinity and nutrient content are directly related to the amount and quality of freshwater that enters the bay and to flow patterns within the bay. Restoration of the Florida Bay ecosystem requires a better understanding of the linkage between the amount of water and nutrients flowing into the bay and the salinity and quality of the bay environment.

Florida↗
USGS1998

Ontogenic and spatial patterns in diet and growth of lake trout in Lake Michigan

Lake trout Salvelinus namaycush in nearshore waters of Lake Michigan grow faster than lake trout residing offshore on Sheboygan Reef, which is in midlake. We examined the stomachs of lake trout, spanning ages 1 through 16, caught in both nearshore and offshore environments of Lake Michigan during 1994 and 1995 to determine whether diet differences may be responsible for the difference in growth rate. A comparison of the diets, coupled with bioenergetics modeling, indicated that juvenile lake trout on Sheboygan Reef experienced slow growth due to low food availability rather than to cold water temperatures. The availability of appropriate‐size prey appeared to regulate lake trout growth. Small prey fish were probably not readily available to small (200‐ to 399‐mm total length) lake trout on Sheboygan Reef, a substantial portion of whose diet consisted of invertebrates; in contrast, nearshore juveniles had a nearly 100% fish diet. Growth rate on the reef remained slow through intermediate lake trout sizes (400–599 mm total length), presumably due to low availability of rainbow smelt Osmerus mordax on the reef. Once lake trout achieved total lengths of approximately 600 mm, they grew slightly faster on Sheboygan Reef than near shore, indicating that large (>170‐mm total length) prey fish were readily available to lake trout in the reef area. On a wet‐weight basis, alewife Alosa pseudoharengus dominated the diet of large (≥600 mm total length) lake trout from both the nearshore and offshore regions of the lake, although bloater Coregonus hoyi composed over 30% of the diet on Sheboygan Reef and in southeastern nearshore Lake Michigan. Size of alewife prey increased with lake trout size. The bloater population currently represents the bulk of the biomass of the adult prey fish community, so our diet analysis suggests that large lake trout are continuing to select alewives.

Illinois, Indiana, Michigan, Wisconsin↗
USGS2009

Compensating for diminishing natural water: Predicting the impacts of water development on summer habitat of desert bighorn sheep

Artificial water sources have been used for decades to enhance and restore wildlife habitat but the benefits of their use have been subject to debate. During the past century, the number of natural springs in Joshua Tree National Park, California, USA, has declined. In response to concerns about the viability of the bighorn sheep (Ovis canadensis nelsoni) population, a number of water developments were constructed throughout the park. We modeled potential historical and present-day summer habitat of female bighorn sheep to evaluate the effectiveness of the artificial and remaining natural water sources in maintaining habitat and to determine how loss of artificial sources might affect future habitat availability. Prior to 1950, 583.5 km2 of summer habitat was potentially available. Presently, only 170.6 km2 of habitat is available around natural water sources and 153.5 km2 is available around guzzlers. When all perennial water sources are included in the habitat model (minus overlap), 302.3 km2 of summer habitat is potentially available. This represents only 51.7% of summer habitat available prior to 1950. Without artificial water developments, 47.7% of present-day summer habitat would be lost, which raises important management questions regarding the debate about what is natural or artificial within otherwise protected areas.

Journal of Arid Environments↗
USGS2026

Persistence of coral reef structures into the twenty-first century

Coral reefs provide important socioecological services but are vulnerable to climate change, which shifts the balance between the production and erosion of calcium carbonate (CaCO 3 ). In this Review, we summarize understanding of reef accretion, describe the mechanisms of carbonate production and erosion, and consider the effects of future ocean warming and acidification on key reef-building and eroding taxa. The combined stressors of climate change substantially reduce net carbonate production, with a more pronounced effect on calcifying algae than corals. However, declining coral cover driven by marine heatwaves and mass bleaching will probably be the dominant determinant of future reef carbonate budgets, and thus only reefs with thermally adapted populations are predicted to maintain the ability to sustain positive CaCO 3 production under climate change, even if calcareous algal cover increases. As carbonate budgets become net negative in the future, the longevity of pre-existing reef frameworks remains unknown and understudied owing to the timescales required to meaningfully assess framework removal rates. Improving estimates of the rates of biologically driven framework loss and chemical dissolution will also be important in better predicting future reef persistence. Key knowledge gaps exist in understanding the effects of deoxygenation on coral reefs, as well as the influence of climate change on understudied sediment-producing taxa such as foraminifera and tropical molluscs.

Nature Reviews Earth & Environment↗
USGS2010

Assessment and management of ecological integrity: Chapter 12

Assessing and understanding the impacts of human activities on aquatic ecosystems has long been a focus of ecologists, water resources managers, and fisheries scientists. While traditional fisheries management focused on single-species approaches to enhance fish stocks, there is a growing emphasis on management approaches at community and ecosystem levels. Of course, as fisheries managers shift their attention from narrow (e.g., populations) to broad organizational scales (e.g., communities or ecosystems), ecological processes and management objectives become more complex. At the community level, fisheries managers may strive for a fish assemblage that is complex, persistent, and resilient to disturbance. Aquatic ecosystem level objectives may focus on management for habitat quality and ecological processes, such as nutrient dynamics, productivity, or trophic interactions, but a long-term goal of ecosystem management may be to maintain ecological integrity. However, human users and social, economic, and political demands of fisheries management often result in a reduction of ecological integrity in managed systems, and this conflict presents a principal challenge for the modern fisheries manager. The concepts of biotic integrity and ecological integrity are being applied in fisheries science, natural resource management, and environmental legislation, but explicit definitions of these terms are elusive. Biotic integrity of an ecosystem may be defined as the capability of supporting and maintaining an integrated, adaptive community of organisms having a species composition, diversity, and functional organization comparable to that of a natural habitat of the region (Karr and Dudley 1981). Following that, ecological integrity is the summation of chemical, physical, and biological integrity. Thus, the concept of ecological integrity extends beyond fish and represents a holistic approach for ecosystem management that is especially applicable to aquatic systems. The more general term, ecological condition, refers to the state of the physical, chemical, and biological characteristics of the environment and the processes and interactions that connect them. While the concept of ecological integrity may appear unambiguous, its assessment and practice are much less clear. Ecological integrity made its debut in the USA with the Clean Water Act (CWA) of 1972 (Federal Water Pollution Control Act, as amended through Public Law 107–303, November 27, 2002), which states only one objective, “to restore and maintain the chemical, physical, and biological integrity of the Nation’s waters.” This legislation compelled resource managers to focus on chemical pollution from point effluent sources, such as industrial and municipal outflows, as well as give attention to diffuse, chronic, and watershed effects on ecological integrity. Further, the CWA allowed pursuit of restoration programs in degraded water bodies and catalyzed the science and practice of restoration ecology. The term ecosystem health is often raised in discussions of ecological integrity. Perhaps it is natural to anthropomorphize our concern for personal health to ecosystems, so it becomes a useful metaphor for understanding the concept of ecological integrity. However, whether or not an ecosystem should be considered an entity, such as a superorganism, is a debate without end that began with early ecologists and continues today (Clements 1916; Suter 1993; Simon 1999a). Regardless, the ecosystem is indeed a natural unit with a level of organization and properties beyond the collection of those species that occupy it and presents the most appropriate spatial and organizational scale in which to assess and study ecological integrity. Streams and rivers serve as integrators of chemical, physical, and biological conditions across the landscape, and while the theory and practice associated with ecological integrity of aquatic systems is easily applied to flowing waters and is emphasized in this chapter, they are broadly applicable among all aquatic systems.

Book chapter↗
USGS2020

Climate change effects on biodiversity, ecosystems, ecosystem services, and natural resource management in the United States

Climate change is a pervasive and growing global threat to biodiversity and ecosystems. Here, we present the most up-to-date assessment of climate change impacts on biodiversity, ecosystems, and ecosystem services in the U.S. and implications for natural resource management. We draw from the 4th National Climate Assessment to summarize observed and projected changes to ecosystems and biodiversity, explore linkages to important ecosystem services, and discuss associated challenges and opportunities for natural resource management. We find that species are responding to climate change through changes in morphology and behavior, phenology, and geographic range shifts, and these changes are mediated by plastic and evolutionary responses. Responses by species and populations, combined with direct effects of climate change on ecosystems (including more extreme events), are resulting in widespread changes in productivity, species interactions, vulnerability to biological invasions, and other emergent properties. Collectively, these impacts alter the benefits and services that natural ecosystems can provide to society. Although not all impacts are negative, even positive changes can require costly societal adjustments. Natural resource managers need proactive, flexible adaptation strategies that consider historical and future outlooks to minimize costs over the long term. Many organizations are beginning to explore these approaches, but implementation is not yet prevalent or systematic across the nation.

Science of the Total Environment↗
USGS2005

Temporal variation in photosynthetic pigments and UV-absorbing compounds in shallow populations of two Hawaiian reef corals

As we seek to understand the physiological mechanisms of coral bleaching, it is important to understand the background temporal variation in photosynthetic pigments and photoprotective compounds that corals exhibit. In this study, reef flat populations of two hermatypic coral species, Montipora capitata (Dana, 1846) and Porites compressa Dana, 1846, were sampled monthly in Kane'ohe Bay, Hawai'i, from January 1998 to March 1999. Surface ultraviolet radiation (UVR) was measured continually during this time period at the same location. High-performance liquid chromatography (HPLC) analysis of photosynthetic pigments and mycosporine-like amino acids (MAAs) revealed temporal changes in concentrations and proportions of these compounds in tissues of both species of coral. Chlorophyll a (chl a), chlorophyll c2 (chl c2), peridinin, and diadinoxanthin concentrations changed on a skeletal weight (M. capitata) or surface area (P. compressa) basis, significantly correlating with seasonal changes in solar input (number of days from the winter solstice). In P. compressa, diadinoxanthin increased in proportion to the total pigment pool during summer months, suggesting an up-regulation of a xanthophyll cycle. In M. capitata, the ratio of chl a: chl c2 decreased during winter months, suggesting photoacclimation to lower light levels. It is surprising that there was not a clear seasonal pattern in total MAA concentration for either species, with the exception of shinorine in P. compressa. The relative stability of MAA concentrations over the course of the year despite a pronounced seasonal trend in UVR suggests either that MAAs are not performing a photoprotective role in these species or that concentrations are kept at a threshold level in the presence of a dynamic light environment. ?? 2005 by University of Hawai'i Press All rights reserved.

Pacific Science↗
USGS2014

Status of whitebarkpine in the Greater Yellowstone Ecosystem: A step-trend analysis comparing 2004-2007 to 2008-2011

Whitebark pine (Pinus albicaulis) is a foundation and keystone species in upper subalpine environments of the northern Rocky Mountains that strongly influences the biodiversity and productivity of high-elevation ecosystems (Tomback et al. 2001, Ellison et al. 2005). Throughout its historic range, whitebark pine has decreased significantly as a major component of high-elevation forests. As a result, it is critical to understand the challenges to whitebark pine—not only at the tree and stand level, but also as these factors influence the distribution of whitebark pine across the Greater Yellowstone Ecosystem (GYE). In 2003, the National Park Service (NPS) Greater Yellowstone Inventory & Monitoring Network identified whitebark pine as one of twelve significant natural resource indicators or vital signs to monitor (Jean et al. 2005, Fancy et al. 2009) and initiated a long-term, collaborative monitoring program. Partners in this effort include the U.S. Geological Survey, U.S. Forest Service, and Montana State University with representatives from each comprising the Greater Yellowstone Whitebark Pine Monitoring Working Group. The objectives of the monitoring program are to assess trends in (1) the proportion of live, whitebark pine trees (>1.4-m tall) infected with white pine blister rust (blister rust); (2) to document blister rust infection severity by the occurrence and location of persisting and new infections; (3) to determine mortality of whitebark pine trees and describe potential factors contributing to the death of trees; and (4) to assess the multiple components of the recruitment of understory whitebark pine into the reproductive population. In this report we summarize the past eight years (2004-2011) of whitebark pine status and trend monitoring in the GYE. Our study area encompasses six national forests (NF), two national parks (NP), as well as state and private lands in portions of Wyoming, Montana, and Idaho; this area is collectively described as the GYE here and in other studies. The sampling design is a probabilistic, twostage cluster design with stands of whitebark pine as the primary units and 10x50 m belt transects as the secondary units. Primary sampling units (stands) were selected randomly from a sample frame of approximately 10,770 mapped pure and mixed whitebark pine stands ≥2.0 hectares in the GYE (Dixon 1997, Landenburger 2012). From 2004 through 2007 (monitoring transect establishment or initial time-step), we established 176 permanent belt transects (secondary sampling units=176) in 150 whitebark pine stands and permanently marked approximately 4,740 individual trees >1.4 m tall to monitor long-term changes in blister rust infection and survival rates. Between 2008 and 2011 (revisit time-step), these same 176 transects were surveyed and again all previously tagged trees were observed for changes in blister rust infection and survival status. Objective 1. Using a combined ratio estimator, we estimated the proportion of live trees infected in the GYE in the initial time-step (2004-2007) to be 0.22 (0.031 SE). Following the completion of all surveys in the revisit time-step (2008-2011), we estimated the proportion of live trees infected with white pine blister rust as 0.23 (0.028 SE; Table 2). We detected no significant change in the proportion of trees infected in the GYE between the two time-steps. Objective 2. We documented blister rust canker locations as occurring in the canopy or bole. We compared changes in canker position between the initial time-step (2004-2007) and the revisit time-step (2008-2011) in order to assess changes in infection severity. This analysis included the 3,795 trees tagged during the initial time-step that were located and documented as alive at the end of the revisit time-step. At the end of the revisit time-step, we found 1,217 trees infected with blister rust. This includes the 287 newly tagged trees in the revisit time step of which 14 had documented infections. Of these 1,217 trees, 780 trees were infected with blister rust in both time steps. Trees with only canopy cankers made up approximately 43% (519 trees) of the total number of trees infected with blister rust at the end of the revisit time-step, while trees with only bole cankers comprised 20% (252 trees), and those with both canopy and bole cankers included 37% (446 trees) of the infected sample. A bole infection is considered to be more consequential than a canopy canker, as it compromises not only the overall longevity of the tree, but its functional capacity for reproductive output as well (Kendall and Arno 1990, Campbell and Antos 2000, McDonald and Hoff 2001, Schwandt and Kegley 2004). In addition to infection location, we also documented infection transition between the canopy and bole. Of the 780 live trees that were infected with blister rust in both time-steps, approximately 31% (242) maintained canopy cankers and 36% (281) retained bole infections at the end of the revisit time-step. Infection transition from canopy to bole occurred in 30% (234) of the revisit time-step trees while 3% (23) transitioned from bole to canopy infections during this period. Objective 3. To determine whitebark pine mortality, we resurveyed all belt transects to reassess the life status of permanently tagged trees >1.4 m tall. We compared the total number of live tagged trees recorded during monitoring transect establishment to the total number of resurveyed dead tagged trees recorded during the revisit time-step and identified all potential mortality-influencing conditions (blister rust, mountain pine beetle, fire and other). By the end of the revisit time-step, we observed a total of 975 dead tagged whitebark pine trees; using a ratio estimator, this represents a loss of approximately 20% (SE=4.35%) of the original live tagged tree population (GYWPMWG 2012). Objective 4. To investigate the proportion of live, reproducing tagged trees, we divided the total number of positively identified cone-bearing trees by the total number of live trees in the tagged tree sample at the end of the revisit time-step. To approximate the average density of recruitment trees per stand, trees ≤1.4 m tall were summed by stand (within the 500 m² transect area) and divided by the total number of stands. Reproducing trees made up approximately 24% (996 trees) of the total live tagged population at the end of the revisit time-step. Differentiating between whitebark pine and limber pine seedlings or saplings is problematic given the absence of cones or cone scars. Therefore, understory summaries as presented in this report may include individuals of both species when they are sympatric in a stand. The average density of small trees ≤1.4 m tall was 53 understory trees per 500 m². Raw counts of these understory individuals ranged from 0-635 small trees per belt transect. In addition, a total of 287 trees were added to the tagged tree population by the end of 2011. These newly tagged trees were individuals that upon subsequent revisits had reached a height of >1.4 m tall and subsequently added to the sample. Throughout the past decade in the GYE, monitoring has helped document shifts in whitebark pine forests; whitebark pine stands have been impacted by insect, pathogen, wildland fire, and other disturbance events. Blister rust infection is ubiquitous throughout the ecosystem and infection proportions are variable across the region. And while we have documented mortality of whitebark pine, we have also recorded considerable recruitment. We provide this first step-trend report as a quantifiable baseline for understanding the state of whitebark pine in the GYE. Many aspects of whitebark pine health are highly variable across the range of its distribution in the GYE. Through sustained implementation of the monitoring program, we will continue efforts to document and quantify whitebark pine forest dynamics as they arise under periodic upsurges in insect, pathogen, fire episodes, and climatic events in the GYE. Since its inception, this monitoring program perseveres as one of the only sustained longterm efforts conducted in the GYE with a singular purpose to track the health and status of this prominent keystone species.

Natural Resource Technical Report↗
USGS2017

Sampling uncharted waters: Examining rearing habitat of larval Longfin Smelt (Spirinchus thaleichthys) in the upper San Francisco Estuary

The southern-most reproducing Longfin Smelt population occurs in the San Francisco Estuary, California, USA. Long-term monitoring of estuarine habitat for this species has generally only considered deep channels, with little known of the role shallow waters play in supporting their early life stage. To address the need for focused research on shallow-water habitat, a targeted study of Longfin Smelt larvae in littoral habitat was conducted to identify potential rearing habitats during 2013 and 2014. Our study objectives were to (1) determine if larval densities vary between littoral habitats (tidal slough vs. open-water shoal), (2) determine how larval densities in littoral habitats vary with physicochemical and biological attributes, (3) determine if larval densities vary between littoral habitats and long-term monitoring channel collections, and (4) determine what factors predict larval rearing distributions from the long-term monitoring channel collections. Larval densities did not vary between littoral habitats but they did vary between years. Water temperature, salinity, and chlorophyll a were found important in predicting larval densities in littoral habitats. Larval densities do not vary between littoral and channel surveys; however, the analysis based on channel data suggests that Longfin Smelt are hatching and rearing in a much broader region and under higher salinities (∼2–12 psu) than previously recognized. Results of this study indicate that conservation efforts should consider how freshwater flow, habitat, climate, and food webs interact as mechanisms that influence Longfin Smelt recruitment in estuarine environments.

California↗
USGS1982

Nesting ecology of roseate spoonbills at Nueces Bay, Texas

We conducted a study in 1978-1980 of the nesting ecology of Roseate Spoonbills (Ajaia ajaja) in a relatively polluted environment at Nueces Bay, Texas. For 154 marked nests, the average clutch size was 3.0 eggs; 73% of the eggs hatched, and 87% of the nests were successful (hatched at least 1 young). The average nest success rate (total fledglings:total eggs) was 50% or 1.5 fledglings per total nests. Incubation began the day after the first egg was laid, and the incubation period for each egg was 22 days. Eggs hatched in the order that they were laid; the first and second eggs hatched on consecutive days, and the second, third, and fourth eggs hatched every other day. Nest composition and size were highly consistent, but nest placement varied considerably and was dependent on the vegetative configuration of the dredge-material islands. Growth rate of nestlings conformed to a 'standard' growth curve, where body weight of nestlings at fledging equaled that of adults. There was no difference in weight gain among siblings based on actual age. Nestlings fledged at about 6 weeks of age, when feather development was complete. At fledging, the bills of juveniles had almost reached adult width, but bill length was only 67% that of adults. In general, environmental pollutants were low (<2 ppm) in spoonbill eggs, though a few eggs contained elevated concentrations of DDE (up to 15 ppm, wet weight). Some eggshells were 5% thinner than those in museum collections, but the degree of thinning was not within the range known to cause population declines. We conclude that organochlorine pollutants are not adversely affecting spoonbill reproduction at Nueces Bay, Texas, though the area is surrounded by industries and agricultural lands. Apparently, spoonbills are less sensitive to these contaminants than are other aquatic species.

The Auk↗
USGS2006

The third hans cloos lecture. Urban landslides: Socioeconomic impacts and overview of mitigative strategies

As a result of population pressures, hillsides in the world's urban areas are being developed at an accelerating rate. This development increases the risk for urban landslides triggered by rainfall or earthquake activity. To counter this risk, four approaches have been employed by landslide managers and urban planners: (1) restricting development in landslide-prone areas; (2) implementing and enforcing excavation, grading, and construction codes; (3) protecting existing developments by physical mitigation measures and (4) developing and installing monitoring and warning systems. Where they have been utilized, these approaches generally have been effective in reducing the risk due to landslide hazards. In addition to these practices, landslide insurance holds promise as a mitigative measure by reducing the financial impact of landslides on individual property owners. Until recently, however, such insurance has not been widely available and, where it is available, it is so expensive that it has been little used. ?? Springer-Verlag 2006.

Bulletin of Engineering Geology and the Environmen↗
USGS2008

Development of the U.S. Geological Survey's PAGER system (Prompt Assessment of Global Earthquakes for Response)

The Prompt Assessment of Global Earthquakes for Response (PAGER) System plays a primary alerting role for global earthquake disasters as part of the U.S. Geological Survey’s (USGS) response protocol. We provide an overview of the PAGER system, both of its current capabilities and our ongoing research and development. PAGER monitors the USGS’s near real-time U.S. and global earthquake origins and automatically identifies events that are of societal importance, well in advance of ground-truth or news accounts. Current PAGER notifications and Web pages estimate the population exposed to each seismic intensity level. In addition to being a useful indicator of potential impact, PAGER’s intensity/exposure display provides a new standard in the dissemination of rapid earthquake information. We are currently developing and testing a more comprehensive alert system that will include casualty estimates. This is motivated by the idea that an estimated range of possible number of deaths will aid in decisions regarding humanitarian response. Underlying the PAGER exposure and loss models are global earthquake ShakeMap shaking estimates, constrained as quickly as possible by finite-fault modeling and observed ground motions and intensities, when available. Loss modeling is being developed comprehensively with a suite of candidate models that range from fully empirical to largely analytical approaches. Which of these models is most appropriate for use in a particular earthquake depends on how much is known about local building stocks and their vulnerabilities. A first-order country-specific global building inventory has been developed, as have corresponding vulnerability functions. For calibrating PAGER loss models, we have systematically generated an Atlas of 5,000 ShakeMaps for significant global earthquakes during the last 36 years. For many of these, auxiliary earthquake source and shaking intensity data are also available. Refinements to the loss models are ongoing. Fundamental to such an alert system, we are also developing computational and communications infrastructure for rapid and robust operations and worldwide notifications. PAGER’s methodologies and datasets are being developed in an open environment to support other loss estimation efforts and provide avenues for outside collaboration and critique.

Conference Paper↗