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USGS2022

Ecologically relevant moisture and temperature metrics for assessing dryland ecosystem dynamics

In drylands, water-limited regions that cover ~40% of the global land surface, ecosystems are primarily controlled by access to soil moisture and exposure to simultaneously hot and dry conditions. Quantifying ecologically relevant environmental metrics is difficult in drylands because the response of vegetation to moisture and temperature conditions is not easily explained solely by climate-based metrics. To address this knowledge gap, we developed and examined 27 climate and ecological drought metrics across dryland areas of the western U.S. Included in the 27 metrics is a suite of 19 largely new “ecological drought metrics” that are designed to quantify multiple aspects of environmental limitation in drylands, including overall growing conditions, seasonal fluctuations, seasonal moisture timing, exposure to extreme drought, and recruitment potential for perennial plants. To quantify these metrics, we simulated water balance pools and fluxes of daily soil moisture at multiple depths with historical weather from 1970-2010 using the SOILWAT2 ecosystem water balance model. We assessed the relationships among these metrics and their spatial and temporal patterns. We found that the inclusion of ecological drought metrics substantially increased the dimensionality of the climate metrics dataset; the number of independent variables needed to explain 90% of the variance in the dataset increased with the addition of ecological drought metrics. Spatial patterns in overall growing conditions represented well-known differences among ecoregions, for example high temperatures and low precipitation in the southwest and cool temperatures and greater precipitation in the northeast. Seasonal fluctuation in soil water availability (SWA) was greatest in the southwest (Mojave Desert) while fluctuation in climatic water deficit (CWD) was greatest in the northwest (northern Great Basin and Columbia Plateau). Seasonal timing of moisture also differed among metrics; the timing of wet degree days (WDD), SWA and CWD were only weakly related to seasonal timing of precipitation. Plant recruitment metrics varied strongly across western drylands. In the Great Plains, recruitment events occurred more frequently and lasted longer than in the intermountain regions, where recruitment events were comparatively rare and short. These ecological drought metrics provide new insight into patterns of soil moisture and temperature that shape the structure and function of dryland ecosystems. The metrics will be useful for assessing the potential impact of climate change on dryland ecosystems and developing adaptive resource management strategies to sustain dryland ecosystem services in a changing world.

Ecohydrology↗
USGS2019

Determination of study reporting limits for pesticide constituent data for the California Groundwater Ambient Monitoring and Assessment Program Priority Basin Project, 2004–2018—Part 1: National Water Quality Schedules 2003, 2032, or 2033, and 2060

The California Groundwater Ambient Monitoring and Assessment Program Priority Basin Project (GAMA-PBP) is a long-term cooperative project designed to assess the quality of groundwater resources used for public and domestic drinking water supplies in the State of California, to monitor and evaluate changes to that quality, to investigate the human and natural factors controlling water quality, and to improve the availability of comprehensive groundwater quality data and information. Between May 18, 2004, and May 3, 2018, the GAMA-PBP collected 3001 groundwater samples for analysis of pesticide constituents by the U.S. Geological Survey (USGS) National Water Quality Laboratory (NWQL)(note that ‘pesticide constituents’ includes parent compounds and degradates). Of these samples, 2994 were analyzed for pesticide constituents on schedules 2003, 2032, or 2033 (65 to 84 constituents), and 840 were analyzed for pesticide constituents on schedule 2060 (58 constituents). The original dataset reported by the NWQL to the USGS National Water Information System (NWIS) database contained a total of 2,688 detections of 78 pesticide constituents and 253,825 non-detections. In this original dataset, 33 percent of the 3,001 samples analyzed had reported detections of one or more pesticide constituents. This report describes the GAMA-PBP data-quality objectives for pesticide data, the procedures used to establish study reporting limits, and use of those reporting limits to censor the data from the NWQL so that the final data published by the GAMA-PBP meet these data-quality objectives. The final GAMA-PBP dataset for samples collected from May 2004 to May 2018, after censoring, had a total of 1,632 detections of 37 pesticide constituents. In the final GAMA-PBP dataset, 25 percent of the 3,001 samples analyzed had detections of one or more pesticide constituents. The presence of pesticides in groundwater is commonly evaluated by calculating detection frequencies. Detection frequencies for pesticides are sensitive to detection limits and method performance for concentrations near those limits; therefore, the two primary data quality issues addressed in the GAMA-PBP data-quality objectives for pesticides are (1) establishing criteria for classifying data from the laboratory as detections or non-detections for the purpose of data reporting by the project and (2) accounting for changes in analytical methods or method performance over time. The GAMA-PBP addresses these issues by developing study reporting limits that are used as the boundary between detections and non-detections for the reporting of GAMA-PBP results. These reporting limits are defined from method detection limits (MDLs) provided by the NWQL, unless examination of results from laboratory set blanks (LSBs) and GAMA-PBP field blanks indicates that a higher concentration censoring limit is warranted. The GAMA-PBP selected the MDL as the primary choice for defining study reporting limits for consistency with U.S. Environmental Protection Agency (EPA) guidelines for reporting detections of pesticides and other organic constituents. A five-step procedure is used to develop study reporting limits and censor the GAMA-PBP dataset accordingly. The effect of the censoring at each step is described to provide information about the relative effect of each step on the overall censoring of the dataset. Steps 1 and 2 can be implemented at the time the data are received, whereas steps 3−5 require information accumulated over an extended period. Step 1: Reject results that were most likely the result of specific contamination instances attributable to unusual field or laboratory conditions during sample collection or processing. Two such instances were identified, leading to rejection of 25 detections, which were assigned a data-quality indicator code of “Q” for “reviewed and rejected” in the NWIS database. Step 2: Use the NWQL MDLs in effect at the time each sample was analyzed as the reporting limit. A total of 506 detections were censored on this basis. Step 3: Use the maximum MDL established by the NWQL during July 2004–August 2018 (MDLmax) as the reporting limit. The rationale for using the MDLmax as the reporting limit is based primarily on the observation that the concentrations of MDLs generally increased over time. A total of 438 detections were censored on this basis. Step 4: Use the LSBs to identify periods of greater potential laboratory contamination bias and define raised reporting limits to be used during those periods. These periods were defined by using a moving average detection frequency approach. For consistency with the NWQL procedures for defining raised reporting limits on the basis of detections in LSBs, the raised reporting limits were defined as equal to three times the highest concentration measured in an LSB during the period. A total of 25 detections in groundwater samples analyzed during periods of increased laboratory contamination bias were censored. Step 5: Use the LSBs and field blanks to identify potential contamination bias from field or laboratory processes outside of the time periods identified in step 4. The NWQL protocols were used to define the MDLs from blanks analyzed outside of the periods identified in step 4. If an MDL defined from blanks was greater than the MDLmax, the MDL defined from blanks was used to censor the data. One constituent had a study reporting limit defined on this basis, and a total of 62 detections in groundwater samples were censored. As of 2019, the USGS NWIS database does not have the capability to store both the original value reported by the NWQL and the final value published by the GAMA-PBP that reflects application of the quality-control censoring described in this report. In the interim, while this capability is developed, the 1,031 results censored in steps 2−5 are blocked from public release in NWIS, and the GAMA-PBP has published the original and final values in a USGS data release accompanying this report. The entire GAMA-PBP final dataset for pesticide constituents on schedules 2003, 2032, or 2033, or on schedule 2060 is publicly available in that USGS data release, through the USGS GAMA-PBP public web portal, and through the California State Water Resources Control Board GAMA public groundwater information system.

California↗
USGS2026

Chronic, low concentration pesticide exposure alters reproduction and behavior in the intertidal sea anemone, Anthopleura elegantissima

Widespread pesticide and herbicide use paired with frequent transport away from application sites has led to pesticide presence in nearly all terrestrial and aquatic environments globally. Pesticides have unintentional toxic effects on non-target organisms by interfering with cellular processes, behavior, feeding, reproduction, and disrupting endocrine processes. The aggregating anemone, Anthopleura elegantissima, is an important species along the North American Pacific coast due to its symbiotic relationships that contribute to high productivity, and its clonal abundance that structures the rocky intertidal habitat. Commonly used pesticides, atrazine, diuron, and carbendazim were previously detected in coastal waters of Oregon, U.S.A. This study examined the potential effects of these pesticides at environmentally relevant concentrations on reproduction, symbionts, and behavior of A. elegantissima over an eight-week period. Pesticides significantly decreased gonad development in all treatments, having the most significant effect in individual treatments of atrazine ( p = 0.003) , carbendazim ( p = 0.003) , and the mixture of all three pesticides ( p = 0.008). All pesticide treatments significantly increased cloning behavior compared to the control, suggesting that cloning could be a stress response. Pesticide exposure also significantly increased tentacle retraction movement, suggesting possible metabolic or energy impairments. While other studies have previously found behavioral changes in anemones due to pollutants, our study is the first to document behavioral changes in anemones from pesticide exposure. All three pesticides significantly impacted a non-target marine invertebrate at environmentally relevant concentrations, which underscores the value of studies that focus on effects on marine invertebrates, paired with comprehensive pesticide monitoring in coastal areas.

Oregon↗
USGS2009

Physiological development and vulnerability to Ceratomyxa shasta of fall-run Chinook Salmon in the Upper Klamath River Watershed

We evaluated a stock for restoring runs of fall Chinook salmon Oncorhynchus tshawytscha in the Upper Klamath River basin by monitoring its development in Iron Gate Hatchery and in net-pens in the Williamson River and Upper Klamath Lake in Oregon. We transferred age-1 hatchery fall Chinook salmon to net-pens in October 2005 and age-0 fall Chinook salmon in May 2006. Indices of smolt development were assessed in the hatchery and after 3 and 14 d in net-pens. Based on gill Na + , K + -ATPase activity and plasma thyroxine (T4) concentration, age-1 Chinook salmon were not developing smolt characteristics in the hatchery during October. Fish transferred to the river or lake had increased plasma cortisol in response to stress and increased T4 accompanying the change in water, but they did not have altered development. Variables in the age-0 Chinook salmon indicated that the fish in the hatchery were smolting. The fish in the river net-pens lost mass and had gill ATPase activity similar to that of the fish in the hatchery, whereas the fish transferred to the lake gained mass and length, had reduced condition factor, and had higher gill ATPase than the fish in the river. These results, along with environmental variables, suggest that the conditions in the lake were more conducive to smoltification than those in the river and thus accelerated the development of Chinook salmon. No Chinook salmon in the hatchery or either net-pen became infected with the myxosporean parasite Ceratomyxa shasta (the presence of which in the river and lake was confirmed) during either trial or when held for 90 d after a 10-d exposure in net-pens (2006 group). We concluded that that there is little evidence of physiological impairment or significant upriver vulnerability to C. shasta among this stock of fall Chinook salmon that would preclude them from being reintroduced into the Upper Klamath River basin.

North American Journal of Fisheries Management↗
USGS2010

Water-quality data for selected streams in the Mississippi Alluvial Plain ecoregion, northwestern Mississippi, September – October 2007

From September through October 2007, the U.S. Geological Survey, in cooperation with the U.S. Environmental Protection Agency, collected and analyzed water-quality samples from streams in the Yazoo River basin within the Mississippi Alluvial Plain ecoregion in northwestern Mississippi. Water-quality samples were collected at 56 sites in the study area and analyzed for various physical and chemical characteristics including, but not limited to, suspended sediment, nutrients, and chlorophyll a. Additionally, water temperature, pH, specific conductance, and dissolved oxygen data were measured at 28 of the sites using multiparameter water-quality meters at 30-minute intervals for a minimum of 48 hours. Data collected for this project will be used in the development of water-quality criteria for nutrients. The nutrient data will enhance existing datasets and support evaluation of cause and effect relations for nutrient criteria development. In addition, these indicators will assist in the development and evaluation of restoration and remediation plans for water bodies not meeting their designated uses, as stated in the U.S. Environmental Protection Agency's Clean Water Act Section 303(d).

Mississippi↗
USGS1989

Habitat suitability criteria for assessment of instream flow needs of fish

In the western portion of the United States, competition for stream water gas often been fierce. Water resource management agencies in the southeastern United States, where water has been relatively abundant, are not being faced with similar competing demands for water, and with increasing pressures to develop and defend recommendations for protecting fish and invertebrates in streams. Streamflow depletion at any time can result in severe long-term effects on fish populations(Peters, 1982). The allocation of stream water to any numerous instream or offstream uses is tied to the issues of water quantity, quality, and timing, which center on two critical questions: (1)when and how much water of an acceptable quality should be left in a stream, and (2) what happens if flow regimes are changed? Answers to these questions will probably be complex, but reliable answers are needed to protect instream and offstream values. If instream flow interests expect to compete with offstream uses for limited water supplies, they must be able to determine reliable and defensible methods for determining instream flow needs and demonstrate the environmental consequences of altered flow regimes. My objectives in this paper are: (a) to present an overview of the need, development, and use of stream habitat suitability criteria, and the use of these criteria for the assessment of instream flow needs; (b) to give a status report on the plan of the National Ecology Research Center (NERC) for expansion of instream flow research in the Southeast; and (c) to discuss the relevancy of the research to river corridor management.

Book↗
USGS2026

Small creatures, big challenge: A review of current knowledge and assessment of research needs to inform water withdrawal management for the Duck River's freshwater mussel fauna

The Duck River is a remarkable national resource, boasting outstanding biodiversity (Ahlstedt et al. 2017). It contains 151 fish species, over 60 mussel species, and 22 snail species, many of which are federally listed (Etnier and Starnes 1993; Johnson et al. 2013; Ahlstedt et al. 2017; Womble and Rosenberger 2025a). The Duck River watershed is at a pivotal time in its management and ecological history due to significant growth in human population and economic activity. The consequent increase in surface water demand presents challenges for sustainable water resource management. The Tennessee Department of Environment and Conservation (TDEC) has permitted or proposed to permit eight water utilities to withdraw over 77 million gallons per day (mgd) from the Duck River, representing > 40% increase from previously permitted amounts (USFWS 2025). On November 20, 2024, Tennessee Governor Bill Lee signed Executive Order No 108 to ensure long-term stability of the Duck River watershed through balancing economic growth, water resource management, and environmental conservation. Some primary components of this plan are the creation of a Comprehensive Regional Drought Management Plan, the development of a Habitat Conservation Plan, and the establishment of the Duck River Watershed Planning Partnership (DRWPP). Although the planning partnership is not focused on a sole aspect of the Duck River, but the watershed as a whole, the mussel assemblages of the Duck River have been a particular focus due to their importance in providing ecosystem services, sensitivity to water quality, conservation status, and sensitivity to periodic drought conditions in this system. With multiple state and federal agencies involved in managing the Duck River’s unique water resources, a focused review on how future water management could affect the freshwater mussel communities in the Duck River will contribute to this process. Our objectives of this review are to: 1. Review the effects of changing flow regimes on mussels, with emphasis on the effect of droughts/low flows, highlighting key processes/factors affecting mussels. 2. Highlight critical data gaps that could allow future, evidence-based water management decisions in this system. 3. Propose research topics to address critical data gaps and enable evidence-based water management decisions that consider the needs of freshwater mussels. Freshwater mussels are a critical component of riverine ecosystems, providing ecosystem services including water filtration, nutrient cycling, and habitat provision (Vaughn et al. 2004; Haag 2012) that benefit human communities. Environmental flows, also referred to as ecological or e-flows, refer to the quantity, timing, and quality of water flows necessary to maintain the ecological health of rivers, wetlands, and other aquatic ecosystems (Acreman and Dunbar 2004; Acreman 2016). For freshwater mussels, environmental flows include maintaining a flow regime and associated water quality regimes that are favorable for both juveniles and adults while also seasonally supporting host fish and the survival of settling glochidia (i.e., larval mussels) in suitable environments (Gates et al. 2015). Freshwater mussels are adapted to the natural flow regime of their native streams, including seasonal variability in flows. As sedentary filter feeders, mussels require adequate water flow to provide oxygen and food (Allen and Vaughn 2009); however, they also require periods of low flow to increase access to fish hosts and to ensure juveniles are not displaced (Gates et al 2015). Mussels are sensitive to water quality conditions, including pollutants, sedimentation, and artificial alterations of temperature and pH (Strayer and Malcom 2012). Mussel community characteristics, including presence, abundance, and species richness, generally increase with stream size (e.g., stream order); however, responses to changes in flow conditions are often species-specific, and the magnitude and timing of extreme flow conditions have more predictive power for mussel community response than general changes in flow (Lopez and Vaughn 2021). Complex hydraulic variables, such as relative shear stress and Reynolds number, can be strong predictors of mussel community responses because they combine simple hydraulic variables (e.g., velocity, depth) with stream channel characteristics, such as substrate composition and dynamics. Droughts directly and indirectly affect mussels by influencing their physiology, behavior, reproduction, and ecosystem roles. Mass mussel die-offs during droughts and low water conditions are widely documented (Vaughn et al. 2015; Sousa et al. 2018; Dubose et al. 2019). Droughts can also lead to a shift in mussel community composition, with drought-tolerant species becoming more dominant while more sensitive species experience declines (Galbraith et al, 2010; Lopez et al. 2022; Vaughn and Atkinson 2025). Droughts affect mussels through direct mortality from stranding as well as physiological stress from altered water temperature and quality, reduced habitat and food availability and quality, increased predation and competition, disruption of reproductive cycles, and increased susceptibility to disease and pathogens. Although the effects of droughts, water withdrawals, and low flow conditions on mussels are an increasing area of study, there is a general paucity of data-driven consensus regarding optimal mitigation approaches and strategies (Cushway et al. 2024). Long-term management decisions regarding water withdrawals, particularly during extended or multi-year drought conditions, may consider factors beyond direct mortality such as the sublethal effects of drought and low flow conditions on freshwater mussels for a comprehensive understanding of the effects of prolonged low flows on freshwater mussels and aquatic communities.

Tennessee↗
USGS2010

Development of a global land cover characteristics database and IGBP DISCover from 1 km AVHRR data

Researchers from the U.S. Geological Survey, University of Nebraska-Lincoln and the European Commission's Joint Research Centre, Ispra, Italy produced a 1 km resolution global land cover characteristics database for use in a wide range of continental-to global-scale environmental studies. This database provides a unique view of the broad patterns of the biogeographical and ecoclimatic diversity of the global land surface, and presents a detailed interpretation of the extent of human development. The project was carried out as an International Geosphere-Biosphere Programme, Data and Information Systems (IGBP-DIS) initiative. The IGBP DISCover global land cover product is an integral component of the global land cover database. DISCover includes 17 general land cover classes defined to meet the needs of IGBP core science projects. A formal accuracy assessment of the DISCover data layer will be completed in 1998. The 1 km global land cover database was developed through a continent-by-continent unsupervised classification of 1 km monthly Advanced Very High Resolution Radiometer (AVHRR) Normalized Difference Vegetation Index (NDVI) composites covering 1992-1993. Extensive post-classification stratification was necessary to resolve spectral/temporal confusion between disparate land cover types. The complete global database consists of 961 seasonal land cover regions that capture patterns of land cover, seasonality and relative primary productivity. The seasonal land cover regions were aggregated to produce seven separate land cover data sets used for global environmental modelling and assessment. The data sets include IGBP DISCover, U.S. Geological Survey Anderson System, Simple Biosphere Model, Simple Biosphere Model 2, Biosphere-Atmosphere Transfer Scheme, Olson Ecosystems and Running Global Remote Sensing Land Cover. The database also includes all digital sources that were used in the classification. The complete database can be sourced from the website: http://edcwww.cr.usgs.gov/landdaac/glcc/glcc.html.

International Journal of Remote Sensing↗
USGS2018

Development of an aerial population survey method for elk (Cervus elaphus) in Rocky Mountain National Park, Colorado

Executive Summary Since the early 1990s, substantial effort and funding have been expended to conduct research to guide development of a 20-year Elk and Vegetation Management Plan for Rocky Mountain National Park (RMNP) in Colorado. One goal of the plan is to maintain the elk ( Cervus elaphus ) population size at the lower end of the natural range of variation. To implement management actions called for in the plan, accurate and reliable population estimates are needed, as well as a better understanding of the spatial and temporal distribution of elk. The previous aerial survey protocol and population estimation model used by the park had not been updated since the model’s initial calibration more than 15 years ago and the model was developed with an insufficient number (n=44) of observations. Thus we initiated research to reevaluate, update, and improve elk population estimation protocols for RMNP. We considered several alternative survey and analysis methods, and concluded that a hybrid population-estimation model using a simultaneous double-observer technique with sighting covariates was the most appropriate and effective aerial survey methodology for this population and the environmental conditions in RMNP. Instructional protocols for conducting these surveys in the future, along with datasheets, are provided in this report’s appendixes. To develop an improved method for aerial elk surveys, we used elk radio-collar location data from our study and other studies, and applied geographic information system analyses to define the survey area and develop effective, repeatable survey transect lines. We used telemetry data from radio-collared elk to inform our understanding of the temporal and spatial scale of elk movements across the park boundary, elk use of tree cover during potential survey hours, and elk use of different elevations within their range. Determining where elk were during surveys helped to fine-tune a survey design that improved spatial cover-age and decreased costs where possible, while standardizing the method to make it repeatable from year to year. We conducted aerial helicopter surveys to test our methodology in an adaptive, iterative process during three winters: 2007–2008, 2008–2009, and 2009–2010. We gained new information on each survey and used results to refine subsequent surveys. Our results confirm that elk movements were highly dynamic with respect to park boundary crossings; an average of six round trips from the park to Estes Park, Colorado, and back per month were taken by global positioning system-collared bull elk. We observed a strong diurnal temporal pattern of bull elk use of trees; elk were found in dense tree cover from 15:00−22:00 but not as often during morning and early afternoon hours when surveys were conducted. We used information on elk use of different altitudes to refine and establish a more efficient survey area. During the time of our study, a concurrent study in the park deployed 120 very high frequency radio collars on elk cows. We used those collar locations during our flights to increase sample size and to evaluate the level of precision we would gain by using “known fates analysis” (in which elk were known to be in the survey area, out of the survey area, or deceased based on radio-collar locations collected simultaneously during aerial surveys). Using radio-collar locations reduced bias by 1.1–8.8 percent and increased precision (that is, reduced the width of confidence intervals). This report provides final population estimates analyzed with and without radio-collar data to demonstrate what is gained by using marked individuals.

Colorado↗
USGS2021

Environmental factors predicting the orientation of sea turtle hatchlings on a naturally lighted beach: A baseline for light-management goals

On sea turtle nesting beaches, artificial lighting associated with human development interferes with hatchling orientation from nest to sea. Although hatchling disorientation has been documented for many beaches, data that managers can use in understanding, predicting, and managing the issue are of limited detail. The present study provides baseline hatchling orientation data that can be compared to those from beaches with artificial lighting to prioritize light-management efforts there. In 2014, the precision of hatchling orientation was quantified for 87 nests on a naturally lighted beach that had little to no artificial lighting. Precision of hatchling orientation was regressed against seven environmental variables: beach slope, distance from nest to dune, dune height, apparent dune silhouette height relative to nest site, moon illumination percentage, cloud cover percentage, and relative humidity. Results favored a regression model that included distance from nest to dune, with shorter distances from the dune predicting a narrower angular range (i.e., greater precision) of hatchling orientation. The study confirmed findings of an earlier laboratory experiment that highlighted the importance to accurate hatchling orientation of a dark silhouette (dune) on the side of the nest site opposite the ocean side. Reducing artificial light and promoting the planting of pioneer plants that assist dune formation can increase hatchling survival.

Florida↗
USGS2002

Groundwater contamination downstream of a contaminant penetration site. II. Horizontal penetration of the contaminant plume

Part I of this study (Rubin, H.; Buddemeier, R.W. Groundwater Contamination Downstream of a Contaminant Penetration Site Part 1: Extension-Expansion of the Contaminant Plume. J. of Environmental Science and Health Part A (in press).) addressed cases, in which a comparatively thin contaminated region represented by boundary layers (BLs) developed within the freshwater aquifer close to contaminant penetration site. However, at some distance downstream from the penetration site, the top of the contaminant plume reaches the top or bottom of the aquifer. This is the location of the "attachment point," which comprises the entrance cross section of the domain evaluated by the present part of the study. It is shown that downstream from the entrance cross section, a set of two BLs develop in the aquifer, termed inner and outer BLs. It is assumed that the evaluated domain, in which the contaminant distribution gradually becomes uniform, can be divided into two sections, designated: (a) the restructuring section, and (b) the establishment section. In the restructuring section, the vertical concentration gradient leads to expansion of the inner BL at the expense of the outer BL, and there is almost no transfer of contaminant mass between the two layers. In the establishment section, each of the BLs occupies half of the aquifer thickness, and the vertical concentration gradient leads to transfer of contaminant mass from the inner to the outer BL. By use of BL approximations, changes of salinity distribution in the aquifer are calculated and evaluated. The establishment section ends at the uniformity point, downstream from which the contaminant concentration profile is practically uniform. The length of the restructuring section, as well as that of the establishment section, is approximately proportional to the aquifer thickness squared, and is inversely proportional to the transverse dispersivity. The study provides a convenient set of definitions and terminology that are helpful in visualizing the gradual development of uniform contaminant concentration distribution in an aquifer subject to contaminant plume penetration. The method developed in this study can be applied to a variety of problems associated with groundwater quality, such as initial evaluation of field data, design of field data collection, the identification of appropriate boundary conditions for numerical models, selection of appropriate numerical modeling approaches, interpretation and evaluation of field monitoring results, etc.

Journal of Environmental Science and Health - Part↗
USGS2019

Monitoring protocol development and assessment for narrowly endemic toads in Nevada, 2018

Several species and subspecies of toads are endemic to small spring systems in the Great Basin, and their restricted ranges and habitat extent make them vulnerable to environmental perturbations. Very little is known about several of these toad populations, so a group of stakeholders including the U.S. Geological Survey, U.S. Fish and Wildlife Service, Bureau of Land Management, Nevada Department of Wildlife, the U.S. Navy, U.S. Forest Service, and Oregon State University met to discuss information needs on these populations and to develop a monitoring protocol that would detect population changes over time. In cooperation with the U.S. Fish and Wildlife Service, the U.S. Geological Survey implemented the proposed survey protocol, a multi-state occupancy design, for three sites: Dixie Valley, Railroad Valley, and Hot Creek, to evaluate its ease of implementation and effectiveness. We found that the multi-state occupancy protocol worked well in the Dixie Valley and, with some refinement, would likely work well in the Railroad Valley. We suggest that capture-mark-recapture of adults might be a more effective approach at Hot Creek. For most life stages of most populations, detection probabilities were positively related to survey duration up to 20 minutes, and the best time of day to conduct surveys varied by life stage and population. We make population-specific suggestions for the number of surveys and their timing and duration. Annual surveys using the suggested survey protocols will likely allow estimation of trends in the proportion of area of each population existing in different population states (occupied, occupied with evidence of reproduction, and unoccupied) and in most cases can be readily implemented with minimal training or handling of toads.

California, Idaho, Nevada, Oregon, Utah↗
USGS2024

Non-native Rhizophora mangle as sinks for coastal contamination on Moloka'i, Hawai'i

Coastal mangrove forests provide a suite of environmental services, including sequestration of anthropogenic contamination. Yet, research lags on the environmental fate and potential human health risks of mangrove-sequestered contaminants in the context of mangrove removal for development and range shifts due to climate change. To address this, we conducted a study on Moloka'i, Hawai'i, comparing microplastic and pesticide contamination in coastal compartments both at areas modified by non-native red mangroves ( Rhizophora mangle ) and unmodified, open coastline. Sediment, porewater, and mangrove plant tissues were collected to quantify microplastic and pesticide concentrations across ecosystem type. Average microplastics were similar between mangrove (8.89 items/kg) and non-mangrove areas (9.01 items/kg) in sediment and porewater, but mangrove roots were a substantial reservoir of microplastics (2004 items/kg). Additionally, there was a strong relationship between proximity to urban development and microplastics detected. Six pesticides were detected, most commonly the insecticide bifenthrin, found in most sediment samples (11.3 ng/g), all root samples (243.3 ng/g), and one propagule sample (8.60 ng/g). Other pesticides detected with appreciable concentrations include the neonicotinoid insecticide imidacloprid and the legacy insecticide transformation product, p,p’-DDE. The other detections, all at concentrations < 1 ng/g, were p,p’-DDT, trifluralin, and permethrin. The high concentrations of bifenthrin in roots compared to lower concentrations detected in sediment suggest that mangrove roots strongly accumulate some pesticides, indicating mangrove roots as a sink for organic contaminants. Study methods could be applied to other Hawaiian Islands and other locations where mangroves have been introduced to further examine the observed trends. Additional information is needed to investigate the fate and cycling of pesticides and microplastics adhered to mangrove roots, to better inform non-native mangrove removal efforts on Moloka'i and elsewhere.

Hawaii↗
USGS2013

Ecological feedbacks can reduce population-level efficacy of wildlife fertility control

1. Anthropogenic stress on natural systems, particularly the fragmentation of landscapes and the extirpation of predators from food webs, has intensified the need to regulate abundance of wildlife populations with management. Controlling population growth using fertility control has been considered for almost four decades, but nearly all research has focused on understanding effects of fertility control agents on individual animals. Questions about the efficacy of fertility control as a way to control populations remain largely unanswered. 2. Collateral consequences of contraception can produce unexpected changes in birth rates, survival, immigration and emigration that may reduce the effectiveness of regulating animal abundance. The magnitude and frequency of such effects vary with species-specific social and reproductive systems, as well as connectivity of populations. Developing models that incorporate static demographic parameters from populations not controlled by contraception may bias predictions of fertility control efficacy. 3. Many population-level studies demonstrate that changes in survival and immigration induced by fertility control can compensate for the reduction in births caused by contraception. The most successful cases of regulating populations using fertility control come from applications of contraceptives to small, closed populations of gregarious and easily accessed species. 4. Fertility control can result in artificial selection pressures on the population and may lead to long-term unintentional genetic consequences. The magnitude of such selection is dependent on individual heritability and behavioural traits, as well as environmental variation. 5. Synthesis and applications . Understanding species' life-history strategies, biology, behavioural ecology and ecological context is critical to developing realistic expectations of regulating populations using fertility control. Before time, effort and funding are invested in wildlife contraception, managers may need to consider the possibility that many species and populations can compensate for reduction in fecundity, and this could minimize any reduction in population growth rate.

Journal of Applied Ecology↗
USGS2021

Hierarchical clustering for paired watershed experiments: Case study in southeastern Arizona, U.S.A.

Watershed studies are often onerous due to a lack of data available to portray baseline conditions with which to compare results of monitoring environmental effects. A paired-watershed approach is often adopted to simulate baseline conditions in an adjacent watershed that can be comparable but assumes there is a quantifiable relationship between the control and treated watersheds. Finding suitably matched pairs that can most accurately depict similar responses is challenging and attributes are rarely quantified. In southeastern Arizona, United States, researchers are investigating the effectiveness of watershed restoration techniques employed by land managers. We selected Smith Canyon to develop a rigorous and quantitatively defensible paired-watershed experimental design. The Smith Canyon watershed consists of 91 structurally similar sub-basins that have a defined basin-like structure and flow channel, allowing for consideration as replicate units. We developed a statistical approach to group sub-basins based on similar structural, biophysical, and hydrologic traits. Our geospatial database consisted of 35 environmental variables, which we reduced to 12 through a correlation analysis. We identified three primary collections of paired sub-basins within the larger watershed. These clusters are being used to inform studies actively being employed in the watershed. Overall, we propose a hierarchical clustering protocol for justification of watershed pairing experiments.

Arizona↗
USGS2007

Evaluation of tandem offline and online solid-phase extraction with liquid chromatography/electrospray ionization-mass spectrometry for the analysis of antibiotics in ambient water and comparision to an independent method

This report describes the performance of an offline tandem solid-phase extraction (SPE) method and an online SPE method that use liquid chromatography/mass spectrometry for the analysis of 23 and 35 antibiotics, respectively, as used in several water-quality surveys conducted since 1999. In the offline tandem SPE method, normalized concentrations for the quinolone, macrolide, and sulfonamide antibiotics in spiked environmental samples averaged from 81 to 139 percent of the expected spiked concentrations. A modified standard-addition technique was developed to improve the quantitation of the tetracycline antibiotics, which had 'apparent' concentrations that ranged from 185 to 1,200 percent of their expected spiked concentrations in matrix-spiked samples. In the online SPE method, normalized concentrations for the quinolone, macrolide, sulfonamide, and tetracycline antibiotics in matrix-spiked samples averaged from 51 to 142 percent of their expected spiked concentrations, and the beta-lactam antibiotics in matrix-spiked samples averaged from 22 to 76 percent of their expected spiked concentration. Comparison of 44 samples analyzed by both the offline tandem SPE and online SPE methods showed 50 to 100 percent agreement in sample detection for overlapping analytes and 68 to 100 percent agreement in a presence-absence comparison for all analytes. The offline tandem and online SPE methods were compared to an independent method that contains two overlapping antibiotic compounds, sulfamethoxazole and trimethoprim, for 96 and 44 environmental samples, respectively. The offline tandem SPE showed 86 and 92 percent agreement in sample detection and 96 and 98 percent agreement in a presence-absence comparison for sulfamethoxazole and trimethoprim, respectively. The online SPE method showed 57 and 56 percent agreement in sample detection and 72 and 91 percent agreement in presence-absence comparison for sulfamethoxazole and trimethoprim, respectively. A linear regression with an R2 of 0.91 was obtained for trimethoprim concentrations, and an R2 of 0.35 was obtained for sulfamethoxazole concentrations determined from samples analyzed by the offline tandem SPE and online SPE methods. Linear regressions of trimethoprim and sulfamethoxazole concentrations determined from samples analyzed by the offline tandem SPE method and the independent M3 pharmaceutical method yielded R2 of 0.95 and 0.87, respectively. Regressed comparison of the offline tandem SPE method to the online SPE and M3 methods showed that the online SPE method gave higher concentrations for sulfamethoxazole and trimethoprim than were obtained from the offline tandem SPE or M3 methods.

Scientific Investigations Report↗
USGS1985

Management of ground water and evolving hydrogeologic studies in New Jersey : a heavily urbanized and industrialized state in the northeastern United States

New Jersey is the most densely populated and one of the most industrialized states in the United States. An abundance of freshwater and proximity to major northeastern metropolitan centers has facilitated this development. Pumpage of freshwater from all aquifers in the State in 1980 was 730 million gallons per day (2.76 million cubic meters per day). Management and efficient development of the ground-water resources of the State are the responsibility of the New Jersey Department of Environmental Protection. Laws have been enacted and updated by the State legislature to manage water allocation and to control the disposal of hazardous wastes. Present resource management is guided by the New Jersey Water-Supply Master Plan of 1981. Funding for management activities is partially derived from the sale of state-approved bonds. Effective planning and regional management require accurate and up-to-date hydrologic information and analyses. The U.S. Geological Survey, in cooperation with the New Jersey Geological Survey, is conducting three intensive ground-water studies involving the collection and interpretation of hydrologic data to meet the urgent water-management needs of New Jersey. These studies are part of a long-term cooperative program and are funded through the Water-Supply Bond Act of 1981. They began in 1983 and are scheduled to be completed in 1988. The project areas are situated in the New Jersey part of the Atlantic Coastal Plain in and near Atlantic City, Camden, and South River. They range in size from 400 to 1,200 mil (1,040 to 3,120 km2). The studies are designed to define the geology, hydrology, and geochemistry of the local ground-water systems. The results of these studies will enable the State to address more effectively major problems in these areas such as declining water levels, overpumping, saltwater intrusion, and ground-water contamination resulting from the improper disposal of hazardous wastes. Specific objectives of these studies by the U.S. Geological Survey are to (1) develop an accurate and up-to-date hydrogeologic data base, (2) design and implement a data-collection program and establish a computerized information management system, (3) refine the conceptualization of the ground-water flow system, and (4) define the geochemistry of the aquifer system by conducting a water-quality appraisal. The objectives are accomplished by standard hydrogeologic methods. Information concerning hydrogeologic framework, ground-water levels, water use, hydraulic characteristics, and water quality in the study areas is compiled from all available sources. Additional data needed are collected through well inventories, surface geophysical surveys, water-quality samplings, water-level measurements, and a well-drilling program. Interpretation of the flow system is based on the use of standard analytical techniques and digital flow modeling. Calibrated flow models will provide ground-water managers with a mechanism to develop and test regional water-supply strategies. Definition of the geochemistry of the aquifer system is accomplished through a variety of methods which depend on the problems and available data in the particular study area. The approach includes statistical analysis of water-quality data, reaction-path modeling, and determination of the movement of chemical constituents using analytical and numerical modeling techniques. A combined staff of 25 to 30 professionals and technicians from the New Jersey District office of the U.S. Geological Survey is committed to the three studies. The staff has specialists in geohydrology, numerical modeling, geochemistry, geophysics, and computer science. The findings of these studies will be published in data reports, interpretive reports, instructional manuals and journal articles.

New Jersey↗
USGS2020

Comparing environmental flow implementation options with structured decision making: Case study from the Willamette River, Oregon

Many frameworks have been used to identify environmental flows for sustaining river ecosystems or specific taxa in the face of widespread flow alteration for human use. However, these methods mostly focus on identifying suitable flows and largely ignore the important links between management actions, resulting flows, flow variability, and ecosystem or social responses. Structured decision making (SDM) could assist the comparison and implementation of environmental flows by providing a framework to compare effects of flow management actions on objectives via environmental flow science. We describe the SDM process and illustrate its application using a case study focused on comparing environmental flow scenarios for the mainstem Willamette River, Oregon, USA. In a short timeframe, SDM was successfully applied to identify management objectives, develop empirical and expert opinion based models predicting ecological responses, and compare scenarios while accounting for uncertainty and partial controllability. We found that no flow scenario was clearly preferred based on available knowledge, largely because river flows could only be partially controlled through available dam operations. Participants agreed that the SDM process was useful and that an additional iteration focused on refining predictive models and incorporating additional objectives could help better inform dam release decisions for the entire basin. In our view, SDM can provide managers with more realistic comparisons of environmental flows by accounting for partial controllability and uncertainty, which may result in greater implementation of available flow management actions.

Oregon↗