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USGS2016

Identifying bird and reptile vulnerabilities to climate change in the southwestern United States

Current and future breeding ranges of 15 bird and 16 reptile species were modeled in the Southwestern United States. Rather than taking a broad-scale, vulnerability-assessment approach, we created a species distribution model (SDM) for each focal species incorporating climatic, landscape, and plant variables. Baseline climate (1940–2009) was characterized with Parameter-elevation Regressions on Independent Slopes Model (PRISM) data and future climate with global-circulation-model data under an A1B emission scenario. Climatic variables included monthly and seasonal temperature and precipitation; landscape variables included terrain ruggedness, soil type, and insolation; and plant variables included trees and shrubs commonly associated with a focal species. Not all species-distribution models contained a plant, but if they did, we included a built-in annual migration rate for more accurate plant-range projections in 2039 or 2099. We conducted a group meta-analysis to (1) determine how influential each variable class was when averaged across all species distribution models (birds or reptiles), and (2) identify the correlation among contemporary (2009) habitat fragmentation and biological attributes and future range projections (2039 or 2099). Projected changes in bird and reptile ranges varied widely among species, with one-third of the ranges predicted to expand and two-thirds predicted to contract. A group meta-analysis indicated that climatic variables were the most influential variable class when averaged across all models for both groups, followed by landscape and plant variables (birds), or plant and landscape variables (reptiles), respectively. The second part of the meta-analysis indicated that numerous contemporary habitat-fragmentation (for example, patch isolation) and biological-attribute (for example, clutch size, longevity) variables were significantly correlated with the magnitude of projected range changes for birds and reptiles. Patch isolation was a significant trans-specific driver of projected bird and reptile ranges, suggesting that strategic actions should focus on restoration and enhancement of habitat at local and regional scales to promote landscape connectivity and conservation of core areas.

Open-File Report↗

USGS2013

Response of Yellowstone grizzly bears to changes in food resources: A synthesis. Final report to the Interagency Grizzly Bear Committee and Yellowstone Ecosystem Subcommittee

The Yellowstone grizzly bear ( Ursus arctos ) was listed as a threatened species in 1975 (Federal Register 40 FR:31734-31736). Since listing, recovery efforts have focused on increasing population size, improving habitat security, managing bear mortalities, and reducing bear-human conflicts. The Interagency Grizzly Bear Committee (IGBC; partnership of federal and state agencies responsible for grizzly bear recovery in the lower 48 states) and its Yellowstone Ecosystem Subcommitte (YES; federal, state, county, and tribal partners charged with recovery of grizzly bears in the Greater Yelowston Ecosystem [GYE]) tasked the Interagency Grizzly Bear Study Team to provide information and further research relevant to three concerns arising from the 9th Circuit Court of Appeals November 2011 decision: 1) the ability of grizzly bears as omnivores to find alternative foods to whitebark pine seeds; 2) literature to support their conclusions; and 3) the non-intuitive biological reality that impacts can occur to individuals without causing the overall population to decline. Specifically, the IGBC and YES requested a comprehensive synthesis of the current state of knowledge regarding whitebark pinbe decline and individual and population-level responses of grizzly bears to changing food resources in the GYE. This research was particularly relevant to grizzly bear conservation given changes in the population trajectory observed during the last decade.

Idaho, Montana, Wyoming↗

USGS2024

High-quality, chromosome-level reference genomes of the viviparous Caribbean skinks Spondylurus nitidus and S. culebrae

New World mabuyine skinks are a diverse radiation of morphologically cryptic lizards with unique reproductive biologies. Recent studies examining population-level data (morphological, ecological, and genomic) have uncovered novel biodiversity and phenotypes, including the description of dozens of new species and insights into the evolution of their highly complex placental structures. Beyond the potential for this diverse group to serve as a model for the evolution of viviparity in lizards, much of the taxonomic diversity is concentrated in regions experiencing increasing environmental instability from climate and anthropogenic change. Consequently, a better understanding of genome structure and diversity will be an important tool in the adaptive management and conservation of this group. Skinks endemic to Caribbean islands are particularly vulnerable to global change with several species already considered likely extinct and several remaining species either endangered or threatened. Combining PacBio long-read sequencing, Hi-C, and RNAseq data, here we present the first genomic resources for this group by describing new chromosome-level reference genomes for the Puerto Rican Skink Spondylurus nitidus and the Culebra Skink S. culebrae . Results indicate two high quality genomes, both ∼1.4 Gb, assembled nearly telomere to telomere with complete mitochondrion assembly and annotation.

Genome Biology and Evolution↗

USGS2005

Nutrient contributions to the Santa Barbara Channel, California, from the ephemeral Santa Clara River

The Santa Clara River delivers nutrient rich runoff to the eastern Santa Barbara Channel during brief (???1-3 day) episodic events. Using both river and oceanographic measurements, we evaluate river loading and dispersal of dissolved macronutrients (silicate, inorganic N and P) and comment on the biological implications of these nutrient contributions. Both river and ocean observations suggest that river nutrient concentrations are inversely related to river flow rates. Land use is suggested to influence these concentrations, since runoff from a subwatershed with substantial agriculture and urban areas had much higher nitrate than runoff from a wooded subwatershed. During runoff events, river nutrients were observed to conservatively mix into the buoyant, surface plume immediately seaward of the Santa Clara River mouth. Dispersal of these river nutrients extended 10s of km into the channel. Growth of phytoplankton and nutrient uptake was low during our observations (1-3 days following runoff), presumably due to the very low light levels resulting from high turbidity. However, nutrient quality of runoff (Si:N:P = 16:5:1) was found to be significantly different than upwelling inputs (13:10:1), which may influence different algal responses once sediments settle. Evaluation of total river nitrate loads suggests that most of the annual river nutrient fluxes to the ocean occur during the brief winter flooding events. Wet winters (such as El Nin??o) contribute nutrients at rates approximately an order-of-magnitude greater than "average" winters. Although total river nitrate delivery is considerably less than that supplied by upwelling, the timing and location of these types of events are very different, with river discharge (upwelling) occurring predominantly in the winter (summer) and in the eastern (western) channel. ?? 2004 Elsevier Ltd. All rights reserved.

Estuarine, Coastal and Shelf Science↗

USGS2021

Anthropogenic edge effects in habitat selection by sun bears in a protected area

Wildlife populations in southeast Asia are increasingly experiencing a broad array of anthropogenic threats, and mammalian carnivores are particularly vulnerable. Populations of the Malayan sun bear Helarctos malayanus are estimated to have declined by 30% over the last 30 years from forest conversion to industrial plantations and mortality associated with human–bear conflicts and illegal wildlife trade. However, the effects of industrial plantations on habitat selection and activity patterns of mammals that live at the protected area-plantation interface, including sun bears, are not well known. We investigated habitat selection and activity patterns of sun bears in Tabin Wildlife Reserve in Sabah, Malaysia. We deployed 83 remote camera sites to record sun bear detections during two sampling periods (2012–2013 and 2017). We used generalized linear models to examine relationships between sun bear presence and site covariates representing physical, environmental and anthropogenic elements of the landscape. Relative probability of sun bear presence was positively associated with distance to roads and elevation. Because most roads were on the reserve boundary and often associated with oil palm plantations, proximity to roads likely served as a surrogate measure of human accessibility and activity in peripheral areas of the reserve. Supporting that interpretation, sun bears close to the reserve boundary were primarily active at night, whereas daytime activity was more common for bears in the interior. Our findings indicate that sun bears alter behaviour and habitat selection likely in response to anthropogenic activities at the edges of Tabin Wildlife Reserve (112 200 ha). Because the ratio of edge to interior increases steeply with declining habitat area, smaller protected areas bordered by plantations are predicted to have greater impacts on sun bear behaviour and, potentially, population persistence. Effective conservation actions may benefit from management to improve the security of edge habitats for sun bears and other vulnerable species.

Tabin Wildlife Reserve↗

USGS2016

Fire effects on wildlife in Central Hardwoods and Appalachian regions

Fire is being prescribed and used increasingly to promote ecosystem restoration (e.g., oak woodlands and savannas) and to manage wildlife habitat in the Central Hardwoods and Appalachian regions, USA. However, questions persist as to how fire affects hardwood forest communities and associated wildlife, and how fire should be used to achieve management goals. We provide an up-to-date review of fire effects on various wildlife species and their habitat in the Central Hardwoods and Appalachians. Documented direct effects (i.e., mortality) on wildlife are rare. Indirect effects (i.e., changes in habitat quality) are influenced greatly by light availability, fire frequency, and fire intensity. Unless fire intensity is great enough to kill a portion of the overstory, burning in closed-canopy forests has provided little benefit for most wildlife species in the region because it doesn’t result in enough sunlight penetration to elicit understory response. Canopy reduction through silvicultural treatment has enabled managers to use fire more effectively. Fire intensity must be kept low in hardwoods to limit damage to many species of overstory trees. However, wounding or killing trees with fire benefits many wildlife species by allowing increased sunlight to stimulate understory response, snag and subsequent cavity creation, and additions of large coarse woody debris. In general, a fire-return interval of 2 yr to 7 yr benefits a wide variety of wildlife species by providing a diverse structure in the understory; increasing browse, forage, and soft mast; and creating snags and cavities. Historically, dormant-season fire was most prevalent in these regions, and it still is when most prescribed fire is implemented in hardwood systems as burn-days are relatively few in the growing season of May through August because of shading from leaf cover and high fuel moisture. Late growing-season burning increases the window for burning, and better control on woody composition is possible. Early growing-season fire may pose increased risk for some species, especially herpetofauna recently emerged from winter hibernacula (April) or forest songbirds that nest in the understory (May to June). However, negative population-level effects are unlikely unless the burned area is relatively large and early growing-season fire is used continually. We did not find evidence that fire is leading to population declines for any species, including Endangered Species Act (ESA)-listed species (e.g., Indiana bat [ Myotis sodalis Mill. Allen] or northern long-eared bat [ M. septentrionalis Trouess.]). Instead, data indicate that fire can enhance habitat for bats by increasing suitability of foraging and day-roost sites. Similarly, concern over burning and displacement of woodland salamanders (Plethodontidae), another taxa of heightened conservation concern, is alleviated when fire is prescribed along ecologically appropriate aspect and slope gradients and not forced into mesic, high site index environments where salamanders are most common. Because topography across the Central Hardwoods and Appalachians is diverse, we contend that applying fire on positions best suited for burning is an effective approach to increase regional landscape heterogeneity and biological diversity. Herein, we offer prescriptive concepts for burning for various wildlife species and guilds in the Central Hardwoods and Appalachians.

Appalachian region, Central Hardwoods region↗

USGS2006

The need for coherence between waterfowl harvest and habitat management

Two of the most significant management efforts affecting waterfowl populations in North America are the North American Waterfowl Management Plan (the Plan) and Federal harvest management programs. Both the Plan and harvest management are continental in scope, involve an extensive group of stakeholders, and rely on adaptive processes of biological planning, implementation, and evaluation. The development of these programs has occurred independently, however, and there has been little explicit recognition that both harvest and habitat effects should be considered for coherent management planning and evaluation. For example, the harvest strategy can affect whether population objectives of the Plan are met, irrespective of the success of the Plan's habitat conservation efforts. Conversely, habitat conservation activities under the Plan can influence harvest potential and, therefore, the amount of hunting opportunity provided. It seems increasingly clear that the Plan's waterfowl population objectives can only be useful for conservation planning and evaluation if they are accompanied by an explicit specification of the harvest strategy and environmental conditions under which they are to be achieved. This clarification also is necessary to ensure that Plan population objectives are not attained solely through the reduction of hunting opportunity. We believe then that it is imperative that these key waterfowl-management programs work to harmonize their objectives. Harvest management programs and the Plan ought to be working toward the same ends, but that is not possible so long as the mutually reinforcing relationship of these programs is obscured by ambiguities in their management objectives.

Wildlife Society Bulletin↗

USGS2026

Feathers and flu: Identifying data gaps in avian influenza host dynamics to prioritize wildlife conservation

Highly pathogenic avian influenza viruses (HPAIV) have had disastrous, worldwide effects on wild birds and domestic poultry since the emergence of the A/goose/Guangdong/1/1996 (Gs/GD/96) lineage. The currently circulating H5N1 clade 2.3.4.4b has an expanded set of susceptible hosts, including many migratory wild birds, and is associated with higher transmission rates, increased susceptibility among wild bird hosts, and a greater number of wildlife reservoirs. Certain wild bird life-history strategies and behaviors have been suggested to explain avian hosts’ susceptibility and exposure to HPAIV. These biological traits include gregariousness, such as colonial nesting and mixed flock foraging, predation or scavenging on wild birds, and association with aquatic habitats. Variation in host infection responses (e.g., infectability, shedding rates and duration, mortality rate, antibody development) informs the overall infection risk across avian species, yet the specific role of biological traits is often inconsistent and unclear across taxa. Moreover, the interactions and potential compounding effects among these biological traits remain largely unknown. To develop a more holistic understanding of cumulative risk across bird species, we integrate existing information on infection risk factors (i.e., susceptibility, immunological response, and behavioral traits) into a qualitative multivariate analysis. This approach enabled us to examine how infection risk factors relate to biological traits (e.g., phylogeny, physiology, behavior, species range) and to begin disentangling their complex interactions. We quantified and summarized these risk factors across host species and qualitatively ranked species by their viral responses along a proposed HPAIV response continuum, guided by expectations of traits and metrics associated with competence or vulnerability to HPAIV. In doing so, we aimed to better understand how viral responses and biological traits synergistically interact to influence cumulative risk across wild bird species. This work broadly expands on the previous avian influenza literature, which has focused on Anseriformes and Charadriiformes as primary viral reservoirs. We tie our findings to effective disease management responses with links to risk components, including descriptions of potential surveillance strategies applied to research and One Health goals, as well as a fuller understanding of how resources may be better deployed for rapid response when spillovers do inevitably occur. Additionally, we identified numerous areas where vital epidemiological information is lacking to best characterize the spread of these viruses. Ultimately, this improved understanding will help identify and inform disease management needs and decision making.

Wildlife Monographs↗

USGS2020

Robust age estimation of southern sea otters from multiple morphometrics

Reliable age estimation is an essential tool to assess the status of wildlife populations and inform successful management. Aging methods, however, are often limited by too few data, skewed demographic representation, and by single or uncertain morphometric relationships. In this study, we synthesize age estimates in southern sea otters Enhydra lutris nereis from 761 individuals across 34 years of study, using multiple noninvasive techniques and capturing all life stages from 0 to 17 years of age. From wild, stranded, and captive individuals, we describe tooth eruptions, tooth wear, body length, nose scarring, and pelage coloration across ontogeny and fit sex‐based growth functions to the data. Dental eruption schedules provided reliable and identifiable metrics spanning 0.3–9 months. Tooth wear was the most reliable predictor of age of individuals aged 1–15 years, which when combined with total length, explained >93% of observed age. Beyond age estimation, dental attrition also indicated the maximum lifespan of adult teeth is 13‒17 years, corresponding with previous estimates of life expectancy. Von Bertalanffy growth function model simulations of length at age gave consistent estimates of asymptotic lengths (male L oo = 126.0‒126.8 cm, female L oo = 115.3‒115.7 cm), biologically realistic gestation periods ( t 0 = 115 days, SD = 10.2), and somatic growth (male k = 1.8, SD = 0.1; female k = 2.1, SD = 0.1). Though exploratory, we describe how field radiographic imaging of epiphyseal plate development or fusions may improve aging of immature sea otters. Together, our results highlight the value of integrating information from multiple and diverse datasets to help resolve conservation problems.

Ecology and Evolution↗

USGS2025

Methodology for quantifying biodiversity

Protected and Conserved Areas (PCAs) are usually created and managed for multiple values, with biodiversity conservation being the primary value for most PCAs (see Chapter 1). When using Natural Climate Solutions (NCS) or Ecosystem-based Management (EBM) approaches to climate change mitigation, it is important to ensure that there are no unintended negative consequences on biodiversity and co-benefits for biodiversity are sought. This requires baseline biodiversity information and periodic monitoring. The Convention on Biological Diversity (CBD) has developed a monitoring framework to measure progress (CBD COP 15 2022) towards the GBF. The framework consists of: • headline indicators for national, regional and global monitoring; • global level indicators (collated from yes/no responses in national reports and used to provide a count of the number of countries having undertaken specific activities); • component indicators (which are a list of optional indicators that may apply at global, regional, national and sub-national levels); • complementary indicators (which are a list of optional indicators for thematic or in-depth analysis of each goal and target). Further details of the monitoring framework can be found in Decision 15/5: Monitoring framework for the Kunming-Montreal Global Biodiversity Framework (CBD COP 15, 2022). See Table 5.1 for headline indicators and related targets that they measure. These indicators are used to track national progress towards the GBF. However, those designing sub-national or regional PCA frameworks can use them as well. Biodiversity can be measured at different scales, both spatially and temporally, and at different levels and attributes of biological organisation (Noss, 1990). The Kunming-Montreal Global Biodiversity Framework (GBF) (Convention on Biological Diversity, 2022, December 18) includes goals and targets across scales, with Targets 1 and 3 focused on spatial planning and PCA creation, Targets 2 and 4 focused on restoration and species management to prevent extinction, Target 5 focused on fish stocks, Target 8 on minimising climate change impacts, Target 11 on ecosystem services, and Target 21 on biodiversity information for monitoring the GBF.

IUCN WCPA Protected Area Technical Report Series↗

USGS2024

Desert Tortoise translocation plan for the U.S. Department of the Army National Training Center and Fort Irwin Western Training Area

The U.S. Department of the Army proposes to commence military activity at the Fort Irwin National Training Center within the Western Training Area (WTA) and to translocate Mojave Desert tortoises ( Gopherus agassizii ; hereafter tortoise) that will be affected to the Western Training Area Translocation Site (WTATS). This desert tortoise translocation plan provides a timeline of activities, actions for which permits may be required, and guidelines for assessing the short-term and long-term success of this desert tortoise translocation. Importantly, the monitoring projects described are designed to document the ultimate effects of the Army's translocation action (not just inform future translocations elsewhere). Results from the translocation, corresponding monitoring, and research projects will inform future translocations throughout the Mojave Desert for expanding human development. The plan has three main objectives: (1) provide guidelines to achieve a safe, humane, and successful translocation of tortoises from the WTA, with minimal effect to resident desert tortoises at sites where translocated animals are released (recipient sites); (2) study translocated, resident, and reference animals (tortoises living near translocation areas but whose home ranges do not overlap those of translocated or resident tortoises) to learn as much as possible about the ecology, conservation, and management of the desert tortoise; and (3) define best management practices for successful translocation and provide metrics to evaluate success over multiple time scales, which we identify for the short- and long-term. The procedures to plan, implement, monitor, and study translocation of tortoises were written using terms and conditions outlined in the U.S. Fish and Wildlife Service Biological Opinion 2021 that described effects of the expansion of the military base boundary, as well as recommendations provided in the Desert Tortoise Recovery Plan (and 5-year review). We provide guidance on appropriate translocation timing and procedures, as well as on how tortoise ecology and habitat can best be studied to further knowledge on tortoise translocation. The plan provides analysis for landscape tortoise density and abundance estimates, suitable sites for translocation of tortoises, and short- and long-term metrics that are addressed and measured by specific monitoring and research projects that can be used to assess the success of translocation activities.

California↗

USGS2024

U.S.-Mexico Borderland & vegetation community map

People on both sides of the United States-Mexico border need a high-resolution, binational vegetation community map that spans the entire United States-Mexico borderlands. Traditionally, mapping efforts in this region were impeded by complex logistics related to the international border, differing national needs and plans, and resource allocations and priorities. To address this need, scientists from the U.S. Geological Survey (USGS) Southwest Biological Science Center partnered with the Sonoran Joint Venture, the U.S. Fish and Wildlife Service (FWS) Migratory Bird Program, data engineers from the Department of Biosystems Engineering at the University of Arizona, and collaborators from the Wildlands Network, the Borderlands Program to produce the first prototype land cover map within the overlapping Mojave Desert, Sonoran Desert, and the North American Bird Conservation Initiative’s Bird Conservation Region 33 (BCR33) using Landsat satellite data . BCR33 is an area of high biodiversity, providing habitat for bird species of concern and other wildlife. The land cover map supports FWS recovery plan efforts related to conservation planning activities for many species, including Yellow-billed Cuckoo ( Coccyzus americanus ), Cactus Ferruginous Pygmy-Owl ( Glaucidium brasilianum cactorum ), Southwestern Willow Flycatcher ( Empidonax traillii extimus ), Yuma Ridgway’s Rail ( Rallus obsoletus yumanensis ), Bendire’s thrasher ( Toxostoma bendirei ), LeConte’s thrasher ( Toxostoma lecontei ), Masked Bobwhite ( Colinus virginianus ridgwayi ), jaguar ( Panthera onca ), and endangered plants such as Bartram’s stonecrop ( Graptopetalum bartramii ) and the Pima pineapple cactus ( Coryphantha robustispina ssp. robustispina ). In 2024, a Phase-II map for the full BCR33 region was completed, increasing the understanding of the binational nature of natural communities. The published map and associated paper can be found here .

Borderland↗

USGS2000

Breeding season ecology: Chapter 6 in Status, ecology and conservation of the Southwestern Willow Flycatcher (RMRS-GTR-60)

The willow flycatcher ( Empidonax traillii ) breeds across much of the conterminous United States and in portions of extreme southern Canada. As might be expected in such a wide-ranging species, willow fly- catchers in different portions of the range exhibit differences in appearance, song, and ecological characteristics. The intent of this chapter is to provide information on the breeding-season ecology of the southwestern subspecies, E.t. extimus . However, most ecological studies to date have dealt with other willow flycatcher subspecies. Relatively few studies have been published on E.t. extimus , and much of what is currently known is presented in unpublished literature (e.g., agency and consulting firm reports); these sources are relied upon heavily in this chapter. This chapter does not address habitat characteristics in depth, other than for nest sites (refer to A Survey of Current Breeding Habitats for additional details). Although southwestern willow flycatchers are frequent victims of nest parasitism by brown-headed cowbirds ( Molothrus ater ), this chapter will not address the topic of parasitism and its effect on breeding ecology (refer to The Ecology of Brown-headed Cowbirds and their Effects on Southwestern Willow Flycatchers for details). Readers interested in more details of willow flycatcher biology and ecology are encouraged to read McCabe’s (1991) treatise, which is based on over a decade of willow flycatchers research in Wisconsin and includes comparisons with other populations and subspecies.

General Technical Report↗

USGS2025

Satellite tracking reveals heavy use of local MPAs by green turtles (Chelonia mydas) nesting in southeast Florida, USA

Florida hosts a regionally important nesting aggregation of green turtles ( Chelonia mydas ) in the North Atlantic, yet internesting and post-nesting movements for this rookery remain poorly understood. Here, we used satellite telemetry to track 23 green turtles nesting on southeast Florida beaches from 2017 to 2021 to investigate their spatial ecology and use of marine protected areas (MPAs) during internesting, migration, and foraging. Marine protected areas are widely used in marine conservation and can be powerful tools for managing species and protecting biodiversity. During internesting, turtles used nearshore, unprotected coastal waters adjacent to the study site. After the nesting season, turtles migrated 24.1 to 203.5 km to previously identified foraging grounds, including areas within Biscayne National Park and Florida Keys National Marine Sanctuary, as well as a high-use but unprotected area off Cape Sable, Florida. Throughout the internesting and foraging periods, turtles exhibited little spatial overlap of core-use areas, suggesting limited space-use sharing even in high-density regions. This study provides the first satellite telemetry dataset for green turtles from southeast Florida and reveals their strong reliance on a relatively small MPA network along southwest Florida. Our findings underscore how these MPAs can support conservation efforts for Florida’s overall green turtle nesting population, while further emphasizing the potential benefits of expanded protections in key areas to safeguard regionally important green turtle habitat.

Florida↗

USGS2011

Selection and preference of benthic habitat by small and large Ammocoetes of the Least Brook Lamprey (Lampetra aepyptera)

In this laboratory study, we quantified substrate selection by small (<50 mm) and large (100–150 mm) ammocoetes of the least brook lamprey ( Lampetra aepyptera ). In aquaria, ammocoetes were given a choice to burrow into six equally-available substrate types: small gravel (2.360–4.750 mm), coarse sand (0.500–1.400 mm), fine sand (0.125–0.500 mm), organic substrate (approximately 70% decomposing leaves/stems and organic sediment particles, and 30% silt and fine sand), an even mixture of silt, clay, and fine sand, and silt/clay (<0.063 mm). Fine sand was selected with a significantly higher probability than any other substrate. Fine sand habitat is limited in many streams, in part owing to geology, but also as a result of channelization and excessive silt/clay sedimentation, which is a conservation concern. Our results indicate that ammocoetes of least brook lampreys are habitat specialists that prefer fine sand habitat. Hence, availability of fine sand habitat may limit distributions and population sizes.

Environmental Biology of Fishes↗

USGS2009

At the foot of the shrew: Manus morphology distinguishes closely-related Cryptotis goodwini and Cryptotis griseoventris (Mammalia: Soricidae) in Central America

Small-eared shrews (Mammalia, Soricidae) of the New World genus Cryptotis are distributed from eastern North America to the northern Andes of South America. One well-defined clade in this genus is the Central American Cryptotis mexicana group, whose members are set off from other species in the genus by their variably broader fore feet and more elongate and broadened fore claws. Two species in the C. mexicana group, Cryptotis goodwini Jackson and Cryptotis griseoventris Jackson, inhabit highlands in Guatemala and southern Mexico and are presumed to be sister species whose primary distinguishing feature is the larger body size of C. goodwini. To better characterize these species and confirm the identification of recently-collected specimens, we obtained digital X-ray images of the manus from large series of dried skins of both species. Measurements of the metacarpals and phalanges successfully separated most specimens of C. goodwini and C. griseoventris . These measurements also show that the fore feet of C. griseoventris from Chiapas, Mexico, are morphologically distinct from those of members of the species inhabiting Guatemala. Univariate, bivariate, and multivariate analyses indicate that fore foot characters are more conservative within species of the C. mexicana group than are cranio-mandibular characters. Patterns of evolution of fore foot characters that superficially appear to be linear gradations are actually more complex, illustrating individual evolutionary trajectories.

Biological Journal of the Linnean Society↗

USGS2017

Incorporating Allee effects into the potential biological removal level

Potential biological removal (PBR) is an approach used to calculate sustainable harvest and “take” limits for populations. PBR was originally derived assuming logistic growth while ignoring the effects of small population size (i.e., an Allee effect). We derived a version of PBR that includes an Allee effect (i.e., small population size or densities limiting population growth rates). We found that PBR becomes less conservative when it fails to consider an Allee effect. Specifically, sustainable harvest and take levels based upon PBR with an Allee effect were between approximately 51% and 66% of levels based upon PBR without an Allee effect. Managers and biologists using PBR may need to consider the limitations if an Allee effect may be present in the species being modeled.

Natural Resource Modeling↗

USGS1989

Retention and transport of nutrients in a third-order stream in northwestern California; hyporheic processes

Chloride and nitrate were coinjected into the surface waters of a third—order stream for 20 d to examine solute retention, and the fate of nitrate during subsurface transport. A series of wells (shallow pits) 0.5—10 m from the adjacent channel were sampled to estimate the lateral interflow of water. Two subsurface return flows beneath the wetted channel were also examined. The conservative tracer (chloride) was hydrologically transported to all wells. Stream water was >88% of flow in wells <4 m from the wetted channel. The lowest percentage of stream water was 47% at a well 10 m perpendicular to the stream. Retention of solutes was greater in the hyporheic zone than in the channel under summer low—flow conditions. Nominal travel time (the interval required for chloride concentration to reach 50% of the plateau concentration) was variable by well location, indicating different flow paths and presumably permeability differences in subsurface gravels. Nominal travel time was M 24 h for wells <5 m from the wetted channel. Coinjected nitrate was not conservative. Two wells were significantly (P < .05) higher in nitrate—N than would be predicted from chloride, while four were significantly lower. Wells 2.0—4.0 m from the wetted channel tended to have higher nitrate concentration than predicted, whereas nitrate sink locations tended to have transport distances >4.3 m. The capacity of the hyporheic zone for transient solute storage and as potential biological habitat varies with channel morphology, bed roughness, and permeability. A conceptual model that considers the groundwater—stream water interface as the fluvial boundary is proposed. Emerging paradigms of the riverine network should consider the hyporheic zone and associated nutrient cycling as an integral component of fluvial structure and function.

Ecology↗