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Genomics of Arctic cod

The Arctic cod (Boreogadus saida) is an abundant marine fish that plays a vital role in the marine food web. To better understand the population genetic structure and the role of natural selection acting on the maternally-inherited mitochondrial genome (mitogenome), a molecule often associated with adaptations to temperature, we analyzed genetic data collected from 11 biparentally-inherited nuclear microsatellite DNA loci and nucleotide sequence data from from the mitochondrial DNA (mtDNA) cytochrome b (cytb) gene and, for a subset of individuals, the entire mitogenome. In addition, due to potential of species misidentification with morphologically similar Polar cod (Arctogadus glacialis), we used ddRAD-Seq data to determine the level of divergence between species and identify species-specific markers. Based on the findings presented here, Arctic cod across the Pacific Arctic (Bering, Chukchi, and Beaufort Seas) comprise a single panmictic population with high genetic diversity compared to other gadids. High genetic diversity was indicated across all 13 protein-coding genes in the mitogenome. In addition, we found moderate levels of genetic diversity in the nuclear microsatellite loci, with highest diversity found in the Chukchi Sea. Our analyses of markers from both marker classes (nuclear microsatellite fragment data and mtDNA cytb sequence data) failed to uncover a signal of microgeographic genetic structure within Arctic cod across the three regions, within the Alaskan Beaufort Sea, or between near-shore or offshore habitats. Further, data from a subset of mitogenomes revealed no genetic differentiation between Bering, Chukchi, and Beaufort seas populations for Arctic cod, Saffron cod (Eleginus gracilis), or Walleye pollock (Gadus chalcogrammus). However, we uncovered significant differences in the distribution of microsatellite alleles between the southern Chukchi and central and eastern Beaufort Sea samples of Arctic cod. Finally, using ddRAD-Seq data, we identified species-specific markers and in conjunction with mitogenome data, identified an Arctic cod x Polar cod hybrid in western Canadian Beaufort Sea. Overall, the lack of genetic structure among Arctic cod within the Bering, Chukchi and Beaufort seas of Alaska is concordant with the absence of geographic barriers to dispersal and typical among marine fishes. Arctic cod may exhibit a genetic pattern of isolation-by-distance, whereby populations in closer geographic proximity are more genetically similar than more distant populations. As this signal is only found between our two fartherest localities, data from populations elsewhere in the species’ global range are needed to determine if this is a general characteristic. Further, tests for selection suggested a limited role for natural selection acting on the mitochondrial genome of Arctic cod, but do not exclude the possibility of selection on genes involved in nuclear-mitogenome interactions. Unlike previous genetic assessment of Arctic cod sampled from the Chukchi Sea, the high levels of genetic diversity found in Arctic cod assayed in this study, across regions, suggests that the species in the Beaufort and Chukchi seas does not suffer from low levels of genetic variation, at least at neutral genetic markers. The large census size of Arctic cod may allow this species to retain high levels of genetic diversity. In addition, we discovered the presence of hybridization between Arctic and Polar cod (although low in frequency). Hybridization is expected to occur when environmental changes modify species distributions that result in contact between species that were previously separated. In such cases, hybridization may be an evolutionary mechanism that promotes an increase in genetic diversity that may provide species occupying changing environments with locally-adapted genotypes and, therefore, phenotypes. Natural selection can only act on the standing genetic variation present within a population. Therefore, given its higher levels of genetic diversity in combination with a large population size, Arctic cod may be resilient to current and future environmental change, as high genetic diversity is expected to increase opportunities for positive selection to act on genetic variants beneficial in different environments, regardless of the source of that genetic variation.

OCS Study

Blackbirds and the southern rice crop

Blackbirds have been a problem to the rice grower since colonial times. The problem has existed wherever rice is grown because man, by his culture of rice (Oryza sativa), creates food-rich ricefield marshes that apparently are more attractive to blackbirds than the natural marshes in which they have flourished for centuries. In the 1700's and 1800's, rice was grown in the lowlands of South Carolina, Georgia, and North Carolina - on the major migratory route of the bobolink ( Dolichonyx oryzivorus ), the historic "ricebird" of that area because of its consumption of ripening rice. By the late 1800's the rice-growing industry had largely shifted to the coastal prairies of Louisiana and Texas, which are bordered by some 5 million acres of marshland-breeding habitat for the redwinged blackbird ( Agelaius phoeniceus ) and the boat-tailed grackle ( Cassidix mexicanus ). By 1900, rice was being grown on the Grand Prairie of eastern Arkansas, which bestrides the largest blackbird flyway in the country. In recent decades, rice culture has spread to other sections of Arkansas and thence to contiguous areas in Louisiana, Mississippi, Tennesee, and Missouri. In effect, then, man has taken the rice to the blackbirds.

Resource Publication

DDE and DDD residues correlated with mortality of experimental birds

Nearly everywhere in nature are found DDE and DDD, which are metabolites of DDT, and they often become concentrated through food chains. DDD is also a commercial insecticide. large amounts of both are frequently found in birds, but the significance of these amounts has puzzled many owrkers. Studies at Clear Lake, California 1 gave some data on DDD danger levels, but less is known of DDE, the member of the DDT group that is most frequent and most abundant in nature. Although DDE is toxic, relatively alrge residues are found in apparently healthy animals. As one step in untanglig the problem, it seemed important to determine the residue levels that indicate danger to life. earlier work with DDR and dieldrin has shown the value of this approach. 2-5, 1 2

Conference Paper

An initial comparison of pesticides and amphibian pathogens between natural and created wetlands in the New Jersey Pinelands, 2014–16

A study conducted by the U.S. Geological Survey, in cooperation with the New Jersey Pinelands Commission and Montclair State University, was designed to compare pesticide concentrations and the presence and prevalence of amphibian pathogens between natural ponds and two types of created wetlands, excavated ponds and stormwater basins, throughout the New Jersey Pinelands. The study described herein is part of a larger study by the New Jersey Pinelands Commission designed to compare the functional equivalency of natural and created wetlands throughout the New Jersey Pinelands. Sites were selected on the basis of land-use classifications within a 500-meter radius around each wetland from a pool of natural ponds, excavated ponds, and stormwater basins determined by the New Jersey Pinelands Commission. Water, bed-sediment, anuran-food, and composite larval-anuran-tissue samples were collected from four reference (minimum land-use effects) and four degraded (maximum land-use effects) sites from each wetland type for a total of 24 ponds or basins throughout the New Jersey Pinelands during 2014–16. Prevalence of Ranavirus was determined on the basis of tail clips collected from 60 individual larval anurans in each wetland, and 10 animals from each wetland also were swabbed for the presence of Batrachochytrium dendrobatidis (Bd). Other constituents measured included turbidity, pH, specific conductance, dissolved oxygen, dissolved organic carbon, percent organic carbon in sediment, and composite larval-anuran lipid content. The amount of altered land (percent agricultural plus percent developed) ranged from 0 to 62.4 percent for the natural ponds, 0 to 63.6 percent for the excavated ponds, and 23.3 to 80.2 percent for the stormwater basins. The herbicides atrazine and metolachlor were observed in 60 and 89 percent of the water samples, respectively. The insecticide bifenthrin was the most frequently detected current-use pesticide (greater than 25 percent of the samples) in bed-sediment, anuran-food, and composite larval-anuran-tissue samples. The legacy insecticide p,p' -DDT and its primary degradates p,p' -DDD and p,p' -DDE were the most frequently detected compounds in bed-sediment and anuran-food samples (32–76 percent in sediment samples and 24–72 percent in anuran-food samples). Significantly, greater numbers of pesticides and higher total pesticide concentrations were observed in stormwater basins than in natural and excavated ponds. Reference wetlands had fewer pesticides and lower total pesticide concentrations compared to degraded wetlands, indicating a positive relation between percent altered land and pesticides throughout the New Jersey Pinelands. Ranavirus was observed in larvae from 4 wetlands, including 1 reference natural pond, 1 degraded natural pond, and 2 degraded stormwater basins, with prevalence ranging from 3 to 43 percent. Bd was detected in swabs from 18 animals and in 4 natural ponds (1 reference and 3 degraded), 3 excavated ponds (all reference), and 2 stormwater basins (1 reference and 1 degraded); however, detection probability was low. In the wetlands with Bd detections, between 10 and 30 percent (between 1 and 3) of the animal’s swabbed tested positive for Bd. Owing to the limited number of positive detections for both Bd and Ranavirus , no statistical comparisons between wetland types and land-use classifications were possible.

New Jersey

Stable isotope deltas: Tiny, yet robust signatures in nature

Although most of them are relatively small, stable isotope deltas of naturally occurring substances are robust and enable workers in anthropology, atmospheric sciences, biology, chemistry, environmental sciences, food and drug authentication, forensic science, geochemistry, geology, oceanography, and paleoclimatology to study a variety of topics. Two fundamental processes explain the stable isotope deltas measured in most terrestrial systems: isotopic fractionation and isotope mixing. Isotopic fractionation is the result of equilibrium or kinetic physicochemical processes that fractionate isotopes because of small differences in physical or chemical properties of molecular species having different isotopes. It is shown that the mixing of radioactive and stable isotope end members can be modelled to provide information on many natural processes, including 14C abundances in the modern atmosphere and the stable hydrogen and oxygen isotopic compositions of the oceans during glacial and interglacial times. The calculation of mixing fractions using isotope balance equations with isotope deltas can be substantially in error when substances with high concentrations of heavy isotopes (e.g. 13C, 2H, and 18O ) are mixed. In such cases, calculations using mole fractions are preferred as they produce accurate mixing fractions. Isotope deltas are dimensionless quantities. In the International System of Units (SI), these quantities have the unit 1 and the usual list of prefixes is not applicable. To overcome traditional limitations with expressing orders of magnitude differences in isotope deltas, we propose the term urey (symbol Ur), after Harold C. Urey, for the unit 1. In such a manner, an isotope delta value expressed traditionally as−25 per mil can be written as−25 mUr (or−2.5 cUr or−0.25 dUr; the use of any SI prefix is possible). Likewise, very small isotopic differences often expressed in per meg ‘units’ are easily included (e.g. either+0.015 ‰ or+15 per meg can be written as+15 μUr.

Isotopes in Environmental and Health Studies

Trophic transfer efficiency in the Lake Superior food web: Assessing the impacts of non-native species

Ecosystem-based management relies on understanding how perturbations influence ecosystem structure and function (e.g., invasive species, exploitation, abiotic changes). However, data on unimpacted systems are scarce; therefore, we often rely on impacted systems to make inferences about ‘natural states.’ Among the Laurentian Great Lakes, Lake Superior provides a unique case study to address non-native species impacts because the food web is dominated by native species. Additionally, Lake Superior is both vertically (benthic versus pelagic) and horizontally (nearshore versus offshore) structured by depth, providing an opportunity to compare the function of these sub-food webs. We developed an updated Lake Superior EcoPath model using data from the 2005/2006 lake-wide multi-agency surveys covering multiple trophic levels. We then compared trophic transfer efficiency (TTE) to previously published EcoPath models. Finally, we compared ecosystem function of the 2005/2006 ecosystem to that with non-native linkages removed and compared native versus non-native species-specific approximations of TTE and trophic flow. Lake Superior was relatively efficient (TTE = 0.14) compared to systems reported in a global review (average TTE = 0.09), and the microbial loop was highly efficient (TTE > 0.20). Non-native species represented a very small proportion (<0.01%) of total biomass and were generally more efficient and had higher trophic flow compared to native species. Our results provide valuable insight into the importance of the microbial loop and represent a baseline estimate of non-native species impacts on Lake Superior. Finally, this work is a starting point for further model development to predict future changes in the Lake Superior ecosystem.

Lake Superior

Uptake of methoxychlor from food and water by the American toad (Bufo americanus)

Various studies (Mulla et al. 1963; Ferguson and Gilbert 1967; Cooke 1973) have examined the effects of pesticides on anuran amphibians, but the routes of contaminant uptake by transformed amphibians have not been evaluated. The need of frogs and toads to imbibe water from natural surface water would seem to make them vulnerable to uptake from this source. Fish are known to accumulate pesticides from both food and water (Jarvinen et al. 1977). Toads are more terrestrial and tend to lose water less readily than most other amphibians (Thorson and Svihla 1943); hence they should he a conservative estimator of the potential for uptake of pesticides from water. Methoxychlor is an analogue of DDT and has been widely used to replace it. It is a good model of many pesticides in current use in its low persistence in animal tissues (Gardner and Bailey 1975), and its long half life in water (Wolfe et al. 1977). It is also suitable for study because of its relatively low toxicity to amphibians (Kaplan and Overpeck 1964) and its easily detected residues. In the present study we measured the accumulation of methoxychlor from food and water in a preliminary evaluation of the two routes of exposure.

Bulletin of Environmental Contamination and Toxico

Fertilizer consumption and energy input for 16 crops in the United States

Fertilizer use by U.S. agriculture has increased over the past few decades. The production and transportation of fertilizers (nitrogen, N; phosphorus, P; potassium, K) are energy intensive. In general, about a third of the total energy input to crop production goes to the production of fertilizers, one-third to mechanization, and one-third to other inputs including labor, transportation, pesticides, and electricity. For some crops, fertilizer is the largest proportion of total energy inputs. Energy required for the production and transportation of fertilizers, as a percentage of total energy input, was determined for 16 crops in the U.S. to be: 19–60% for seven grains, 10–41% for two oilseeds, 25% for potatoes, 12–30% for three vegetables, 2–23% for two fruits, and 3% for dry beans. The harvested-area weighted-average of the fraction of crop fertilizer energy to the total input energy was 28%. The current sources of fertilizers for U.S. agriculture are dependent on imports, availability of natural gas, or limited mineral resources. Given these dependencies plus the high energy costs for fertilizers, an integrated approach for their efficient and sustainable use is needed that will simultaneously maintain or increase crop yields and food quality while decreasing adverse impacts on the environment.

Natural Resources Research

Mercury and methylmercury in reservoirs in Indiana

Mercury (Hg) is an element that occurs naturally, but evidence suggests that human activities have resulted in increased amounts being released to the atmosphere and land surface. When Hg is converted to methylmercury (MeHg) in aquatic ecosystems, MeHg accumulates and increases in the food web so that some fish contain levels which pose a health risk to humans and wildlife that consume these fish. Reservoirs unlike natural lakes, are a part of river systems that are managed for flood control. Data compiled and interpreted for six flood-control reservoirs in Indiana showed a relation between Hg transport, MeHg formation in water, and MeHg in fish that was influenced by physical, chemical, and biological differences among the reservoirs. Existing information precludes a uniform comparison of Hg and MeHg in all reservoirs in the State, but factors and conditions were identified that can indicate where and when Hg and MeHg levels in reservoirs could be highest. As part of a statewide monitoring network for Hg and MeHg in Indiana streams, 66 water samples were collected from four reservoir tailwater sites (downstream near the dams) on a quarterly schedule for 5 years. The reservoirs were Brookville Lake, Cagles Mill Lake, J. Edward Roush Lake, and Mississinewa Lake. Particulate-bound Hg concentrations were significantly lower in tailwater samples than in samples from free-flowing streams in the statewide network. (Free-flowing streams were not affected by dams and were not upstream from these reservoirs.) These data indicated the reduced flow velocity of water upstream from dams was allowing particulate-bound Hg to settle out of the water in the reservoir pools. The concentration ratios of MeHg to Hg were significantly higher in the tailwater samples than in samples from free-flowing streams, and the MeHg to Hg ratios were significantly higher in summer than in other seasons. To evaluate the conditions related to MeHg formation, pools of three reservoirs (Brookville Lake, Monroe Lake, and Patoka Lake) were investigated during summer hydrologic conditions. Water temperature and dissolved oxygen were measured from the water surface to the lake bottom at 10 to 17 transects across each reservoir to identify three thermal strata, defined by water temperature, dissolved oxygen concentration, and depth. Depth-specific water samples were collected from these thermal strata throughout each reservoir, from the headwaters to the dam and from the tailwater. Mercury concentrations higher than 0.04 nanogram per liter (ng/L) were detected in all 53 samples, and MeHg concentrations higher than 0.04 ng/L were detected in 53 percent of the samples. The investigation found a zone of water below 8 or 9 meters, with temperatures less than 18 degrees Celsius and dissolved oxygen less than 3.5 milligrams per liter, extending through nearly half the reservoir area in Monroe Lake and Patoka Lake. This zone had abundant dissolved MeHg and concentration ratios of dissolved MeHg to Hg that ranged from 25 to 82 percent. This zone also had water with pH less than 7 and decreased dissolved sulfate, conditions indicating sulfate reduction by microorganisms that promoted a high potential for the conversion of Hg to MeHg. Reservoir outflow came from this zone at Monroe Lake and contributed to a tailwater concentration ratio for dissolved MeHg to Hg of 56 percent. Reservoir outflow at Patoka Lake was not from this zone, and dissolved MeHg was not detected in the tailwater. In contrast, samples from the summer pool at Brookville Lake had no MeHg detections even though Hg was detected, probably because the water pH higher than 7 inhibited sulfate reduction and did not promote the conversion of Hg to MeHg. Mercury and MeHg concentrations and the concentration ratios of MeHg to Hg in water varied among the six reservoirs in Indiana, and the differences were related to a combination of factors that could apply to other reservoirs. In areas with moderate to high rates of atmospheric Hg wet and dry deposition, Hg runoff and transport to streams and reservoirs was potentially highest for reservoirs with heavily forested watersheds in steep terrains of near-surface bedrock. Methylmercury concentrations and concentration ratios of MeHg to Hg were highest for reservoirs with the longest summer pools and highest inflow-to-outflow retention times, where water-chemistry conditions favoring sulfate reduction promoted conversion of Hg to MeHg. Methylmercury (reported as Hg) in fish-tissue samples collected for the State fish consumption advisory program was used to describe MeHg food-web accumulation and magnification in the reservoirs. The highest percentages of fish-tissue samples with Hg concentrations that exceeded the criterion of 0.30 milligram per kilogram for protection of human health were from Monroe Lake (38 percent) and Patoka Lake (33 percent). A review of the number and size of fish species caught from these two reservoirs resulted in two implications for fish consumption by humans. First, the highest numbers of fish harvested for potential human consumption were species more likely to have MeHg concentrations lower than the human-health criterion (crappie, bluegill, and catfish). Second, although largemouth bass were likely to have MeHg concentrations higher than the human-health criterion, they were caught and released more often than they were harvested. However, the average size largemouth bass (in both reservoirs) and above-average size walleye (in Monroe Lake) that were harvested for potential human consumption were likely to have MeHg concentrations higher than the human-health criterion.

Indiana

Mechanisms of drift-feeding behavior in juvenile Chinook salmon and the role of inedible debris in a clear water Alaskan stream

Drift-feeding fish are challenged to discriminate between prey and similar-sized particles of debris, which are ubiquitous even in clear-water streams. Spending time and energy pursuing debris mistaken as prey could affect fish growth and the fitness potential of different foraging strategies. Our goal was to determine the extent to which debris influences drift-feeding fish in clear water under low-flow conditions when the distracting effect of debris should be at a minimum. We used high-definition video to measure the reactions of drift-feeding juvenile Chinook salmon (Oncorhynchus tshawytscha) to natural debris and prey in situ in the Chena River, Alaska. Among all potential food items fish pursued, 52 % were captured and quickly expelled from the mouth, 39 % were visually inspected but not captured, and only 9 % were ingested. Foraging attempt rate was only moderately correlated with ingestion rate (Kendall’s τ = 0.55), raising concerns about the common use of foraging attempts as a presumed index of foraging success. The total time fish spent handling debris increased linearly with foraging attempt rate and ranged between 4 and 25 % of total foraging time among observed groups. Our results help motivate a revised theoretical view of drift feeding that emphasizes prey detection and discrimination, incorporating ideas from signal detection theory and the study of visual attention in cognitive ecology. We discuss how these ideas could lead to better explanations and predictions of the spatial behavior, prey selection, and energy intake of drift-feeding fish.

Alaska

Integrating the effects of salinity on the physiology of the eastern oyster, Crassostrea virginica, in the northern Gulf of Mexico through a Dynamic Energy Budget model

We present a Dynamic Energy Budget (DEB) model for the eastern oyster, Crassostrea virginica , which enables the inclusion of salinity as a third environmental variable, on top of the standard foodr and temperature variables. Salinity changes have various effects on the physiology of oysters, potentially altering filtration and respiration rates, and ultimately impacting growth, reproduction and mortality. We tested different hypotheses as to how to include these effects in a DEB model for C. virginica . Specifically, we tested two potential mechanisms to explain changes in oyster shell growth (cm), tissue dry weight (g) and gonad dry weight (g) when salinity moves away from the ideal range: 1) a negative effect on filtration rate and 2) an additional somatic maintenance cost. Comparative simulations of shell growth, dry tissue biomass and dry gonad weight in two monitored sites in coastal Louisiana experiencing salinity from 0 to 28 were statistically analyzed to determine the best hypothesis. Model parameters were estimated through the covariation method, using literature data and a set of specifically designed ecophysiological experiments. The model was validated through independent field studies in estuaries along the northern Gulf of Mexico. Our results suggest that salinity impacts C. virginica ’s energy budget predominantly through effects on filtration rate. With an overwhelming number of environmental factors impacting organisms, and increasing exposure to novel and extreme conditions, the mechanistic nature of the DEB model with its ability to incorporate more than the standard food and temperature variables provides a powerful tool to verify hypotheses and predict individual organism performance across a range of conditions.

Ecological Modelling

Spatial structure in the diet of imperial eagles Aquila heliaca in Kazakhstan

We evaluated the relationship between spatial variability in prey and food habits of eastern imperial eagles Aquila heliaca at a 90,000 ha national nature reserve in north-central Kazakhstan. Eagle diet varied greatly within the population and the spatial structure of eagle diet within the population varied according to the scale of measurement. Patterns in dietary response were inconsistent with expectations if either ontogenetic imprinting or competition determined diet choice, but they met expectations if functional response determined diet. Eagles nesting near a high-density prey resource used that resource almost exclusively. In contrast, in locations with no single high-density prey species, eagles' diet was more diverse. Our results demonstrate that spatial structuring of diet of vertebrate predators can provide important insight into the mechanisms that drive dietary decisions. ?? OIKOS.

Journal of Avian Biology

Interactions among temporary and permanent meiofauna: Observations on the feeding and behavior of selected taxa

Meiofauna diets and behavioral patterns are relatively unknown despite the fact that in any system, predatory relationships and behavioral responses may play an important role in determining community structure. Therefore, observations on food preferences, feeding behavior, and encounter interactions of members of a meiofauna assemblage were made in the laboratory in dishes of natural sediment. The diets and behavior of two turbellarian species, Neochildia fusca and Archiloa wilsoni were examined in detail. Both are predators and both feed on a variety of other taxa, including the temporary meiofauna. Based upon the results of these experiments, a potential food web was constructed among the temporary and permanent meiofauna. The behavioral responses of these turbellarians and other members of the meiofaunal assemblage at times of encounter were also observed, categorized, and quantified. Implications of these behaviors are discussed.

Biological Bulletin

Reproduction in black-crowned night-herons fed selenium

Agricultural and industrial practices can produce wastewater that contains high concentrations of selenium, a naturally-occurring trace element. Selenium entering aquatic systems through wastewater inflow can accumulate in aquatic food chains to levels that may be toxic to fish and wildlife species. Mallard reproduction is known to be adversely affected by 10 ppm selenium in the diet (containing 7–10 percent moisture, in the form of selenomethionine); however, hatching success of eggs laid by black-crowned night-herons fed a 10 ppm selenium diet, as selenomethionine, in this study was not different from eggs laid by herons fed an unsupplemented diet (0.1 ppm selenium). Organ weights, hemoglobin concentrations, hematocrits, eggshell thickness, and shell thickness did not differ between controls and herons receiving 10 ppm selenium. Developmental malformations commonly associated with selenium exposure in other birds were not observed in heron embryos or hatchlings in the 10 ppm group. However, three-day-old hatchlings from herons fed 10 ppm selenium had shorter radius-ulna and femur lengths and higher liver malondialdehyde concentrations than controls. Selenium residues in heron eggs were lower than those reported in mallards fed the same amount of selenium. Results of this study suggest that herons are less sensitive to the toxic effects of selenium than mallards. Other hypotheses are also considered to explain the different responses of the two species.

Lake and Reservoir Management

The National Ocean Biodiversity Strategy

President Biden has been clear that the ocean is central to life on Earth. As he has proclaimed, “the ocean powers millions of jobs; feeds and sustains us; and is a rejuvenating source of inspiration, exploration, and recreation.” The Biden-Harris Administration has worked hard to fulfill the President’s goal to protect and conserve at least 30% of U.S. waters by 2030. The ocean faces increased threats from warming, overfishing, increased acidity, and loss of biodiversity. It is now more important than ever to sustain the many benefits that the ocean, coasts, and Great Lakes provide, including food, a favorable climate, recreation, physical and mental health, and for many, a sense of cultural identity. Ocean life represents an irreplaceable heritage, the foundation of a habitable planet, and a vast trove of resources. Keeping our ocean healthy requires reliable information on the changing status of these living organisms, the drivers of biodiversity change, and options for effectively addressing those drivers. Over 2 million species are estimated to live in the ocean, yet only about 240,000 species have been described by scientists. Most of the ocean’s benefits result from those diverse species interacting with one another and the environment they create. To protect and conserve the ocean, we as a nation need to make better use of existing knowledge and prioritize acquiring new biodiversity knowledge to enable better policy and management decisions. The ability to monitor ocean species and habitats has expanded dramatically over the past decade, with innovations in technology, genomics, taxonomy, big data management and sharing, artificial intelligence, and machine learning. Yet large fractions of the U.S. ocean remain almost unknown. The National Ocean Biodiversity Strategy (strategy) reflects the urgent need to leverage these advances. The goals of this strategy must be guided by the nation’s diverse voices and ways of knowing, in order to maximize effective and equitable stewardship of the ocean’s diverse life and its benefits to people. The strategy is intended as a guiding document for government to advance three overarching goals: ● Goal 1: Drive delivery of ocean biodiversity knowledge at the national scale. Objectives include developing an Implementation Plan for achieving the strategy’s three goals; establishing a coordination mechanism to manage the implementation; and documenting gaps in biodiversity knowledge and the benefits of ocean biodiversity to people and economies. ● Goal 2: Strengthen tools and institutions to deliver ocean biodiversity knowledge. Objectives include establishing a robust information pipeline to support indicators and dynamic maps of ocean biodiversity, from the coasts to the deep sea. This pipeline should include expanded observing systems and comprehensive data management; science and technology solutions to accelerate the availability of biodiversity information; and plans to leverage previous investments to rebuild and expand the nation’s human capital and infrastructure to sustain foundational taxonomy and biodiversity science. ● Goal 3: Protect, conserve, restore, and sustainably use ocean biodiversity. Objectives include expanding the collection, delivery, and use of biodiversity knowledge to inform actions that advance ocean protection, conservation, restoration, and sustainable development. Government should lead in establishing and incentivizing diverse partnerships across scales and sectors to implement those actions and should educate and involve the public to discover and value the nation’s diverse ocean life. Achieving these goals will require commitments across society: new federal and private investments, coordination across sectors to address climate and equity challenges, and engagement of Indigenous Knowledge holders and frontline communities as full partners throughout planning and implementation. The Subcommittee on Ocean Science and Technology (SOST) IWG-Biodiversity will begin developing an Implementation Plan to describe and direct specific actions to implement the strategy. Successful implementation of the strategy will harmonize and expand collection and delivery of timely knowledge on ocean life to all of society. The strategy will also enable evidence-based management and protection of the ocean. Advancing the strategy will build human and institutional capital and partnerships that support both existing mandates and new needs to rebuild and sustain biodiversity, achieve healthy ocean ecosystems, and manage living resources. Implementing the strategy will deliver knowledge for monitoring, modeling, forecasting, and assessments that support food security, public health, and cultural values, and that more effectively protect, conserve, and restore nature.

Report

Determining low-flow conditions at select streams to Barnegat Bay-Little Egg Harbor as the first step towards the development of ecological-flow targets

Maintaining streamflow to support human water needs and ecosystem services requires a fundamental understanding of the relations between changes in streamflow processes and ecosystem responses. Changes in the natural patterns in flow, geology, and topography alter the habitats that aquatic organisms rely on for food, shelter, and reproduction. The U.S. Geological Survey (USGS) implemented an ecological-flow framework that encapsulates the basic principles of the Ecological Limits of Hydrologic Alteration (ELOHA) to compare the relations between hydrologic metrics and stream conditions and estimate ecological flow needs in the Barnegat Bay-Little Egg Harbor watershed. As a first step in the ELOHA process, streamflow from two historical time periods (occurring between 1933 and 1988) was compared to streamflow for a recent time period (from 2004-2020) for four major streams in the Barnegat Bay-Little Egg Harbor watershed (North Branch Metedeconk River, Toms River, Cedar Creek, and Westecunk Creek), to evaluate if there were statistically significant differences in streamflow metrics. Analysis of monthly, seasonal, and annual low-flow metrics; patterns in the streamflow record; and general land-use changes were used to develop a better understanding of flow conditions in the watershed. The comparative streamflow analysis indicated that notable changes in flow processes for the study streams occurred between the three periods of record (PORs) evaluated in this study: period of record 1 (POR1, from water years 1933–1958), period of record 2 (POR2, from water years 1974–1988), and period of record 3 (POR3, from water years 2004–2020). For example, the mean of the daily streamflow decreased between the historical POR to the current POR in Cedar Creek but increased in North Branch Metedeconk and Toms Rivers. Larger and more significant changes (p-value <0.10) occurred during specific months or were related to the variability or seasonality of flow. North Branch Metedeconk River and Toms River, the two northern and most developed sites, exhibited changes in low-flow metrics and decreases in minimum n-day moving averages. Decreases in the normalized 75th-percentile exceedance flows were evident at three of the four study sub-basins during POR2 and POR3. In comparison, there was little to no evidence of negative changes to low-flow metrics at Westecunk Creek, the southernmost and least developed site, where all low-flow duration metrics increased as well as seasonal minimum consecutive 7-day average flows. Significant increases in monthly minimums (p-value <0.05) at Cedar Creek for spring months (April, May, and June) also were observed. Natural and anthropogenic processes can alter the landscape resulting in concomitant changes in the streamflow regime. There is a need to assess these changes and synthesize the results into a scientifically defensible set of goals and standards that help support the management of environmental flows. This study represents the initial steps in building the hydrologic foundation to inform management and develop future ecological flow targets that balance water availability for human and ecosystem needs in the Barnegat Bay-Little Egg Harbor watershed.

New Jersey

Shorebird migration in the face of climate change: potential shifts in migration phenology and resource availability

Changes in temperature and seasonality resulting from climate change are heterogeneous, potentially altering important sources of natural selection acting on species phenology. Some species have apparently adapted to climate change but the ability of most species to adapt remains unknown. The life history strategies of migratory animals are dictated by seasonal factors, which makes these species particularly vulnerable to heterogeneous changes in climate and phenology. Here, we examine the phenology of migratory shorebirds, their habitats, and primary food resources, and we hypothesize how climate change may affect migrants through predicted changes in phenology. Daily abundance of shorebirds at stopover sites was correlated with local phenology and peaked immediately prior to peaks in invertebrate food resources. A close relationship between migrant and invertebrate phenology indicates that shorebirds may be vulnerable to changes in seasonality driven by climate change. It is possible that shifts in migrant and invertebrate phenology will be congruent in magnitude and direction, but because migration phenology is dependent on a suite of ecological factors, any response is likely to occur at a larger temporal scale and may lag behind the response of invertebrate food resources. The resulting lack of sufficient access to food at stopover habitats may cause migrants to extend migration and have cascading effects throughout their life cycle. If the heterogeneous nature of climate change results in uneven changes in phenology between migrants and their prey, it may threaten the long-term viability of migratory populations

South Dakota

High prevalence of cestodes in Artemia spp. throughout the annual cycle: relationship with abundance of avian final hosts

Brine shrimp, Artemia spp. , act as intermediate hosts for a range of cestode species that use waterbirds as their final hosts. These parasites can have marked influences on shrimp behavior and fecundity, generating the potential for cascading effects in hypersaline food webs. We present the first comprehensive study of the temporal dynamics of cestode parasites in natural populations of brine shrimp throughout the annual cycle. Over a 12-month period, clonal Artemia parthenogenetica were sampled in the Odiel marshes in Huelva, and the sexual Artemia salina was sampled in the Salinas de Cerrillos in Almería. Throughout the year, 4–45 % of A. parthenogenetica were infected with cestodes (mean species richness = 0.26), compared to 27–72 % of A. salina (mean species richness = 0.64). Ten cestode species were recorded. Male and female A. salina showed similar levels of parasitism. The most prevalent and abundant cestodes were those infecting the most abundant final hosts, especially the Greater Flamingo Phoenicopterus ruber . In particular, the flamingo parasite Flamingolepis liguloides had a prevalence of up to 43 % in A. parthenogenetica and 63.5 % in A. salina in a given month. Although there was strong seasonal variation in prevalence, abundance, and intensity of cestode infections, seasonal changes in bird counts were weak predictors of the dynamics of cestode infections. However, infection levels of Confluaria podicipina in A. parthenogenetica were positively correlated with the number of their black-necked grebe Podiceps nigricollis hosts. Similarly, infection levels of Anomotaenia tringae and Anomotaenia microphallos in A. salina were correlated with the number of shorebird hosts present the month before. Correlated seasonal transmission structured the cestode community, leading to more multiple infections than expected by chance.

Almeria;Huelva