Geology ReportsSearch

SEARCH · Geology Reports

Results for “Life Sciences”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 145 records · Page 8Linked to original sources

Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2021

Greater sage-grouse ( Centrocercus urophasianus ) are at the center of state and national land use policies largely because of their unique life-history traits as an ecological indicator for health of sagebrush ecosystems. This updated population trend analysis provides state and federal land and wildlife managers with best-available science to help guide current management and conservation plans aimed at benefitting sage-grouse populations. This analysis relied on previously published population trend modeling methodology from Coates and others (2021) and includes the addition of three analytical updates: (1) identification of population nadirs (lowest points within cycles) at the lek (breeding ground) and neighborhood cluster (group of leks) spatial scales, (2) truncation of prior distributions on rate of change in apparent abundance values to more realistic boundaries for leks with missing data, and (3) addition of 2 years of population lek count data (2020 and 2021) to the current dataset (1953–2021). Bayesian state-space models estimated 2.9 percent average annual decline in sage-grouse populations across their geographical range, which varied among subpopulations at the largest scale of analysis, termed climate clusters (2.2–4.6). Cumulative declines were 42.5, 65.6, and 80.1 percent range-wide across short (19 years), medium (35 years), and long (55 years) temporal periods, respectively. These results indicate that range-wide populations continued to decline during 2020 and 2021, although two climate clusters (eastern area and Bi-State area) have shown growth in population abundance in recent years, indicating they have surpassed a recent population abundance nadir.

Data Report

Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2022

Greater sage-grouse ( Centrocercus urophasianus ) are at the center of state and national land-use policies largely because of their unique life-history traits as an ecological indicator for health of sagebrush ecosystems. This updated population trend analysis provides state and federal land and wildlife managers with best-available science to help guide current management and conservation plans aimed at benefitting sage-grouse populations. This analysis relied on previously published population trend modeling methodology from Coates and others (2021, 2022a) and incorporated population lek count data through 2022. Bayesian state-space models estimated 2.9 percent average annual decline in sage-grouse populations across their geographical range, which varied among subpopulations at the largest scale of analysis, termed climate clusters (2.2–4.7). Cumulative declines were 40.9, 65.0, and 79.6 percent range-wide across short (19 years), medium (35 years), and long (55 years) temporal periods, respectively. These results indicate that the most recent nadir for range-wide populations occurred during 2021. However, growth during 2022 was modest, making 2021 a tentative final nadir at this point.

Data Report

Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2023

Greater sage-grouse ( Centrocercus urophasianus ) are at the center of state and national land-use policies largely because of their unique life-history traits as an ecological indicator for health of sagebrush ecosystems. This updated population trend analysis provides state and federal land and wildlife managers with best-available science to help guide management and conservation plans aimed at benefitting sage-grouse populations. This analysis relied on previously published population trend modeling methodology from Coates and others (2021, 2022a) and incorporates population lek count data for 1960–2023. Included in this update are changes in terminology. Specifically, we now use the terms Period 1 (previously Long), Period 2 (previously Medium/Long), Period 3 (previously Medium), Period 4 (previously Short/Medium), Period 5 (previously Short), and Period 6 (previously Recent) to identify specific trends. State-space models estimated 2.8-percent average annual decline in sage-grouse populations between 1966 and 2021 (Period 1, six population oscillations) across their geographical range. Average annual decline among climate clusters for the same number of oscillations ranged between 2.1 and 3.1 percent. Cumulative declines were 41.1, 64.5, and 78.4 percent range-wide during Period 5 (19 years), Period 3 (35 years), and Period 1 (55 years), respectively. Population growth during 2022 and 2023 continue to point to 2021 as the most recent range-wide nadir.

Data Report

Great Lakes lake trout (Salvelinus namaycush) thiamine monitoring program annual report

Thiamine deficiency in lake trout eggs has been identified to induce early life-stage mortality in the Great Lakes in the 1960s through the 1990s and potentially affecting lake trout recruitment. As a results, the U.S. Geological Survey’s Great Lakes Science Center (GLSC), Eastern Ecological Science Center, and Columbia Environmental Research Center (CERC), and the State University of New York (SUNY) Brockport, in collaboration with partner agencies, have conducted a cooperative program to monitor thiamine concentrations in lake trout Salvelinus namaycush eggs since the late 1990s. In 2023, egg thiamine concentrations were highly variable at each sampling site. No egg samples with thiamine concentrations less than the 4 nmol/g threshold recommended for successful lake trout reproduction were collected in Lakes Superior or Huron. In contrast, 3 to 52% of the lake trout collected at sites in Lakes Michigan, Huron, Ontario and Champlain, and Cayuga Lake had eggs below 4 nmol/g. Time series of mean lake trout egg thiamine concentrations showed high temporal and spatial variability within the Great Lakes region.

Cayuga Lake, Lake Champlain, Lake Erie, Lake Huron

U.S. Geological Survey (USGS) Western Region: Seabirds coastal and ocean science

From the cold, high Arctic area of Alaska to the warm, tropical Pacific area of Hawai'i, a diverse array of seabird species numbering in the millions of individuals live off the bounty of the Pacific Ocean. Many come to land only to nest and raise their young - these are species supremely adapted for life on the water, whether it be near the coast or hundreds of miles at sea. Those seabirds that reside in the North Pacific year-round are joined each summer by millions of migrant birds that leave the southern hemisphere in winter for better feeding conditions in the north. Seabirds in the Pacific remain one of the great wildlife spectacles on the earth. Yet, seabirds face a number of threats such as oil spills, introduction of predators to their nesting islands, and conflicts with fisheries. State and Federal agencies require increasingly sophisticated information on population dynamics, breeding biology, and feeding ecology to successfully manage these species and their ecosystems. Within the Western Region of the USGS, scientists from the Alaska Science Center (ASC), Western Ecological Research Center (WERC), and Pacific Islands Ecosystems Research Center are leading the way in conducting research on many of these little known species. Their aim is to improve our understanding of seabirds in the Pacific and to provide information to support informed management of the birds and their ecosystems.

Fact Sheet

Monitoring sea lamprey pheromones and their degradation using rapid stream-side extraction coupled with UPLC-MS/MS

Pheromones guide adult sea lamprey (Petromyzon marinus) to suitable spawning streams and mates, and therefore, when quantified, can be used to assess population size and guide management. Here, we present an efficient sample preparation method where 100 mL of river water was spiked with deuterated pheromone as an internal standard and underwent rapid field-based SPE and elution in the field. The combination of field extraction with laboratory UPLC-MS/MS reduced the sample consumption from 1 to 0.1 L, decreased the sample process time from more than 1 h to 10 min, and increased the precision and accuracy. The sensitivity was improved more than one order of magnitude compared with the previous method. The influences of experimental conditions were assessed to optimize the separation and peak shapes. The analytical method has been validated by studies of stability, selectivity, precision, and linearity and by the determination of the limits of detection and quantification. The method was used to quantify pheromone concentration from five streams tributary to Lake Ontario and to estimate that the environmental half-life of 3kPZS is about 26 h.

Journal of Separation Science

Importance of nonindigenous harpacticoids (Crustacea: Copepoda) decrease with depth in Lake Ontario

Harpacticoid copepods can be a substantial component of the meiobenthic community in lakes and serve an ecological role as detritivores. Here we present the first species-level lake-wide quantitative assessment of the harpacticoid assemblage of Lake Ontario with emphasis on the status of nonindigenous species. Additionally, we provide COI-5P sequences of harpacticoid taxa through Barcode of Life Data System (BOLD). Harpacticoids were collected at depths from 0.1 to 184 m and from a range of substrates from August to September 2018 as part of the Cooperative Science and Monitoring Initiative (CSMI) offshore benthic survey. Twenty-six meiobenthic samples were analyzed using microscopy for community composition analysis of harpacticoids. We found thirteen indigenous and three nonindigenous species of harpacticoid, with the introduced species dominating at shallow depths. The community transitioned from nonindigenous to indigenous species dominance as depth increased. Nonindigenous species accounted for 79% of the community (by abundance) at depths <20 m, 55% from 20 to 40 m, and only 24% at depths >40 m. The nonindigenous species encountered included the first detections of Schizopera borutzkyi (Monchenko, 1967) and Heteropsyllus nunni (Coull, 1975) from Lake Ontario. S. borutzkyi was the most abundant harpacticoid species in the lake, approaching a maximum density of 50,000/m 2 and a lake-wide average density of 7,900/m 2 . Numerically important indigenous species included Bryocamptus nivalis (Willey, 1925), Canthocamptus robertcokeri (Wilson, 1958), Canthocamptus staphylinoides (Pearse, 1905), and Moraria cristata (Chappuis, 1929). The prevalence of nonindigenous harpacticoids in the meiobenthos of Lake Ontario suggests further investigations of Great Lakes meiofauna communities are warranted.

Lake Ontario

Reproductive characteristics of female sea otters

Several important aspects of reproduction in the female sea otter, such as gestation, pupping frequency, period of pup dependency, and annual pupping rate, were unclear when this study was begun. We present data from 75 tagged adult females that indicate gestation is variable, but on average is about 6 months, the length of pup dependency is 6 mo, thus the pupping interval is usually 12–13 mo. Most females breed for the first time in their fifth year of life. About 85–90% of adult females pup in a given year.

Alaska, California

Differences in life history patterns of American shad, Alosa sapidissima, populations between ancestral, Atlantic coast, and non-native, Pacific coast rivers of North America

Organisms naturalized outside their native range can reveal new life history patterns in new environments. Here, we compare life history patterns of American shad, Alosa sapidissima, from five rivers along the U.S. Pacific coast (introduced range) with contemporary data from the Atlantic coast source populations. The Pacific coast fish grew slower, matured at a younger age, and were less often iteroparous than conspecifics from the Hudson River and Susquehanna River sources. Differences among the Pacific coast populations indicated that some combination of phenotypic plasticity and genetic adaptation has occurred since the transplants in the 1870s. Microchemical analysis of otoliths from returning adults demonstrated an immature, extended freshwater life history form, locally known as “mini-shad”. These fish remain in the river for at least 1 year or enter salt water briefly and then return to fresh water for several months prior to subsequent seaward migration and return as adults. This and other forms of variation (extent of estuary use and size at sea water entry) expand the understanding of Alosine migration and life history diversity.

Canadian Journal of Fisheries and Aquatic Sciences

Electronic tags and genetics explore variation in migrating steelhead kelts (oncorhynchus mykiss), Ninilchik river, Alaska

Acoustic and archival tags examined freshwater and marine migrations of postspawn steelhead kelts (Oncorhynchus mykiss) in the Ninilchik River, Alaska, USA. Postspawn steelhead were captured at a weir in 2002-2005. Scale analysis indicated multiple migratory life histories and spawning behaviors. Acoustic tags were implanted in 99 kelts (2002-2003), and an array of acoustic receivers calculated the average speed of outmigration, timing of saltwater entry, and duration of residency in the vicinity of the river mouth. Ocean migration data were recovered from two archival tags implanted in kelts in 2004 (one male and one female). Archival tags documented seasonal differences in maximum depth and behavior with both fish spending 97% of time at sea <6 m depth (day and night). All study fish were double tagged with passive integrated transponder (PIT) tags implanted in the body cavity. Less than 4% of PIT tags were retained in postspawn steelhead. Molecular genetics demonstrated no significant differences in genetic population structure across years or among spawning life history types, suggesting a genetically panmictic population with highly diverse life history characteristics in the Ninilchik River.

Canadian Journal of Fisheries and Aquatic Sciences

Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2024

Greater sage-grouse ( Centrocercus urophasianus ; hereafter sage-grouse) are at the center of State and national land-use policies largely because of their unique life-history traits as an ecological indicator for the health of sagebrush ecosystems. This updated population trend analysis provides State and Federal land and wildlife managers with the best available science to help guide management and conservation plans aimed at benefiting sage-grouse populations and the ecosystems they inhabit. This analysis relied on previously published population trend modeling methodology from Coates and others (2021, 2022a) and incorporates population lek count data for 1960–2024. Included in this report are methodological updates to lek count data aggregation, state-space model forecasting, and targeted annual warning system signals, which are detailed under individual Modification sections. State-space models estimated a 2.9-percent average annual decline in sage-grouse populations between 1966 and 2021 (Period 1, six population oscillations) across their geographical range. The average annual decline among climate clusters for the same number of oscillations ranged between 2.2 and 3.4 percent. Cumulative declines were 41.2, 64.1, and 78.8 percent range-wide in Period 5 (19 years), Period 3 (35 years), and Period 1 (55 years), respectively.

California, Colorado, Idaho, Montana, Nevada, Nort

Athena Mars rover science investigation

Each Mars Exploration Rover carries an integrated suite of scientific instruments and tools called the Athena science payload. The primary objective of the Athena science investigation is to explore two sites on the Martian surface where water may once have been present, and to assess past environmental conditions at those sites and their suitability for life. The remote sensing portion of the payload uses a mast called the Pancam Mast Assembly (PMA) that provides pointing for two instruments: the Panoramic Camera (Pancam), and the Miniature Thermal Emission Spectrometer (Mini‐TES). Pancam provides high‐resolution, color, stereo imaging, while Mini‐TES provides spectral cubes at mid‐infrared wavelengths. For in‐situ study, a five degree‐of‐freedom arm called the Instrument Deployment Device (IDD) carries four more tools: a Microscopic Imager (MI) for close‐up imaging, an Alpha Particle X‐Ray Spectrometer (APXS) for elemental chemistry, a Mössbauer Spectrometer (MB) for the mineralogy of Fe‐bearing materials, and a Rock Abrasion Tool (RAT) for removing dusty and weathered surfaces and exposing fresh rock underneath. The payload also includes magnets that allow the instruments to study the composition of magnetic Martian materials. All of the Athena instruments have undergone extensive calibration, both individually and using a set of geologic reference materials that are being measured with all the instruments. Using a MER‐like rover and payload in a number of field settings, we have devised operations processes that will enable us to use the MER rovers to formulate and test scientific hypotheses concerning past environmental conditions and habitability at the landing sites.

Journal of Geophysical Research E: Planets

Athena Mars rover science investigation

Each Mars Exploration Rover carries an integrated suite of scientific instruments and tools called the Athena science payload. The primary objective of the Athena science investigation is to explore two sites on the Martian surface where water may once have been present, and to assess past environmental conditions at those sites and their suitability for life. The remote sensing portion of the payload uses a mast called the Pancam Mast Assembly (PMA) that provides pointing for two instruments: the Panoramic Camera (Pancam), and the Miniature Thermal Emission Spectrometer (Mini-TES). Pancam provides high-resolution, color, stereo imaging, while Mini-TES provides spectral cubes at mid-infrared wavelengths. For in-situ study, a five degree-of-freedom arm called the Instrument Deployment Device (IDD) carries four more tools: a Microscopic Imager (MI) for close-up imaging, an Alpha Particle X-Ray Spectrometer (APXS) for elemental chemistry, a Mo??ssbauer Spectrometer (MB) for the mineralogy of Fe-bearing materials, and a Rock Abrasion Tool (RAT) for removing dusty and weathered surfaces and exposing fresh rock underneath. The payload also includes magnets that allow the instruments to study the composition of magnetic Martian materials. All of the Athena instruments have undergone extensive calibration, both individually and using a set of geologic reference materials that are being measured with all the instruments. Using a MER-like rover and payload in a number of field settings, we have devised operations processes that will enable us to use the MER rovers to formulate and test scientific hypotheses concerning past environmental conditions and habitability at the landing sites. Copyright 2003 by the American Geophysical Union.

Journal of Geophysical Research E: Planets

Conceptual model to assess water use associated with the life cycle of unconventional oil and gas development

As the demand for energy increases in the United States, so does the demand for water used to produce many forms of that energy. Technological advances, limited access to conventional oil and gas accumulations, and the rise of oil and gas prices resulted in increased development of unconventional oil and gas (UOG) accumulations. Unconventional oil and gas is developed using a method that combines directional drilling and hydraulic fracturing techniques, allowing for greater oil and gas production from previously unrecoverable reservoirs. Quantification of the water resources required for UOG development and production is difficult because of disparate data sources, variable reporting requirements across boundaries (local, State, and national), and incomplete or proprietary datasets. A topical study was started in 2015 under the U.S. Geological Survey’s Water Availability and Use Science Program, as part of the directive in the Secure Water Act for the U.S. Geological Survey to conduct a National Water Census, to better understand the relation between production of UOG resources for energy and the amount of water needed to produce and sustain this type of energy development in the United States. The Water Availability and Use Science Program goal for this topical study is to develop and apply a statistical model to better estimate the water use associated with UOG development, regardless of the location and target geologic formation. As a first step, a conceptual model has been developed to characterize the life cycle of water use in areas of UOG development. Categories of water use and the way water-use data are collected might change over time; therefore, a generic approach was used in developing the conceptual model to allow for greater flexibility in adapting to future changes or newly available data. UOG development can be summarized into four stages: predrilling construction, drilling, hydraulic fracturing, and ongoing production. The water used in UOG production can be categorized further as direct, indirect, or ancillary water use. Direct water use is defined as the water used for drilling and hydraulic fracturing a well and for maintaining the well during ongoing production. Indirect water use is defined as the water used at or near a well pad. The water used for dust abatement also is considered an indirect use but may be applied away from the well pad. Ancillary water use is defined as the additional local or regional water use resulting from a change (for example, population) directly related to UOG development throughout the life cycle that is not used directly in the well or indirectly for any other purpose at the well pad. The conceptual model presented in this report consists of five elements: (1) input data, (2) processes, (3) decisions, (4) output data, and (5) outcomes. The input data requirements for estimating water use associated with UOG development are somewhat onerous, and obtaining suitable datasets can be challenging because local, State, and Federal agencies do not collect data similarly. The quality of a water-use assessment that uses the conceptual model presented in this report is dependent on the quality and quantity of data that are available for a UOG play. The conceptual model can be used for an assessment with sparse data; however, having sparse data likely will result in greater uncertainty in the water-use estimates. The conceptual model presented in this report is designed to be robust to characterize and simulate the data processing to estimate water use associated with UOG development. Although the results of an analysis that includes missing data have greater uncertainty, the analysis still can be insightful because it can establish a baseline estimate of UOG water use that may be refined further as more data become available. Analysis of models that include missing data also could aid in identifying the data most needed for future water-use estimates. Characterizing individual model limitations is important because the conceptual model can be used in future water-use studies to facilitate data compiling, data processing, estimating, and assessing UOG activities regardless of location.

Scientific Investigations Report

Regional ocean models indicate changing limits to biological invasions in the Bering Sea

Minimal vessel traffic and cold water temperatures are believed to limit non-indigenous species (NIS) in high-latitude ecosystems. We evaluated whether suitable conditions exist in the Bering Sea for the introduction, survival, and reproduction of NIS. We compiled temperature and salinity thresholds of known NIS and compared these to ocean conditions projected during two study periods: current (2003-2012) and mid-century (2030-2039). We also explored patterns of vessel traffic and connectivity for U.S. Bering Sea ports. We found the southeastern Bering Sea had suitable conditions for the year-round survival of 80% of NIS assessed (n=42). However, only 52% of NIS had conditions suitable for reproduction or development (n=25). Conditions north of 58° N that include sub-zero winter water temperatures were unsuitable for the survival and reproduction of most NIS. While mid-century models predicted a northward expansion of suitable conditions, conditions for reproduction remained marginal. Within the highly suitable southeastern Bering Sea is the port of Dutch Harbor, which received the most vessel arrivals and ballast water discharge in the U.S. Bering Sea. Our findings illustrate the potential vulnerability of a commercially important subarctic ecosystem and highlight the need to consider NIS reproductive and developmental life phases when evaluating limits to their establishment.

ICES Journal of Marine Science

Long-term dynamics of winter and summer annual communities in the Chihuahuan Desert

Winter and summer annuals in the Chihuahuan Desert have been intensively studied in recent years but little is known about the similarities and differences in the dynamics between these two communities. Using 15 yr of census data from permanent quadrats, this paper compared the characteristics and temporal dynamics of these two distinct, spatially co-existent but temporally segregated communities. Although the total number of summer annual species recorded during our 15 yr of observation was higher than winter annuals, the mean number of species observed each year was higher in the winter community. The winter community exhibited lower temporal variation in total plant abundance and populations of individual species, lower species turnover rate and higher evenness than the summer community. The rank abundances of species in winter were significantly positively correlated for a period of up to 7 yr while in summer significant positive correlations in rank abundance disappeared after 2 to 3 yr. The higher seasonal species diversity (i.e. number of species observed in each season) in winter rather than the overall special pool (over 15 yr) may be responsible for the greater community stability of winter annuals. The difference in long-term community dynamics between the two communities of annual plants are likely due to the differences in total species pool, life history traits (e.g. seed size), and seasonal climatic regimes.

Portal

Implementing a U.S. national phenology network

The passing of seasons, as gauged by annual events or phenophases in organisms' life cycles, is arguably one of the most pervasive environmental variations on Earth. Shifts in seasonal timing, or phenology, are observed in flowering and other stages of plant development, animal migration and reproduction, hibernation, and the seasonal activity of cold-blooded animals [e.g., Schwartz , 2003; Root et al ., 2005]. As an important life history trait, phenology is an object of natural selection; depending on timescales, shifts in phenology can lead to evolutionary change. Thus, phenology is not only an indicator of pattern in environmental science, but also its variation has fitness consequences for individuals, and these can scale up to broader ecological dynamics.

Eos, Transactions, American Geophysical Union

Ecological requirements for pallid sturgeon reproduction and recruitment in the Missouri River: annual report 2011

The Comprehensive Sturgeon Research Project is a multiyear, multiagency collaborative research framework developed to provide information to support pallid sturgeon recovery and Missouri River management decisions. The project strategy integrates field and laboratory studies of sturgeon reproductive ecology, early life history, habitat requirements, and physiology. The project scope of work is developed annually with cooperating research partners and in collaboration with the U.S. Army Corps of Engineers, Missouri River Recovery—Integrated Science Program. The research consists of several interdependent and complementary tasks that engage multiple disciplines. The research tasks in the 2011 scope of work emphasized understanding of reproductive migrations and spawning of adult sturgeon, and hatch and drift of larvae. These tasks were addressed in three hydrologically and geomorphologically distinct parts of the Missouri River Basin: the Lower Missouri River downstream from Gavins Point Dam, the Upper Missouri River downstream from Fort Peck Dam and including downstream reaches of the Milk River, and the Lower Yellowstone River. The research is designed to inform management decisions related to channel re-engineering, flow modification, and pallid sturgeon population augmentation on the Missouri River, and throughout the range of the species. Research and progress made through this project are reported to the U.S. Army Corps of Engineers annually. This annual report details the research effort and progress made by the Comprehensive Sturgeon Research Project during 2011.

Missouri River