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USGS2013

Semi-automted analysis of high-resolution aerial images to quantify docks in Upper Midwest glacial lakes

Lake resources can be negatively affected by environmental stressors originating from multiple sources and different spatial scales. Shoreline development, in particular, can negatively affect lake resources through decline in habitat quality, physical disturbance, and impacts on fisheries. The development of remote sensing techniques that efficiently characterize shoreline development in a regional context could greatly improve management approaches for protecting and restoring lake resources. The goal of this study was to develop an approach using high-resolution aerial photographs to quantify and assess docks as indicators of shoreline development. First, we describe a dock analysis workflow that can be used to quantify the spatial extent of docks using aerial images. Our approach incorporates pixel-based classifiers with object-based techniques to effectively analyze high-resolution digital imagery. Second, we apply the analysis workflow to quantify docks for 4261 lakes managed by the Minnesota Department of Natural Resources. Overall accuracy of the analysis results was 98.4% (87.7% based on ) after manual post-processing. The analysis workflow was also 74% more efficient than the time required for manual digitization of docks. These analyses have immediate relevance for resource planning in Minnesota, whereas the dock analysis workflow could be used to quantify shoreline development in other regions with comparable imagery. These data can also be used to better understand the effects of shoreline development on aquatic resources and to evaluate the effects of shoreline development relative to other stressors.

Minnesota↗

USGS2016

Comparison of methods to monitor the distribution and impacts of unauthorized travel routes in a border park

The distribution and abundance of human-caused disturbances vary greatly through space and time and are cause for concern among land stewards in natural areas of the southwestern border-lands between the USA and Mexico. Human migration and border protection along the international boundary create Unauthorized Trail and Road (UTR) networks across National Park Service lands and other natural areas. UTRs may cause soil erosion and compaction, damage to vegetation and cultural resources, and may stress wildlife or impede their movements. We quantify the density and severity of UTR disturbances in relation to soils, and compare the use of previously established targeted trail assessments (hereafter — targeted assessments) against randomly placed transects to detect trail densities at Coronado National Memorial in Arizona in 2011. While trail distributions were similar between methods, targeted assessments estimated a large portion of the park to have the lowest density category (0–5 trail encounters per/km 2 ), whereas the random transects in 2011 estimated more of the park as having the higher density categories (e.g., 15–20 encounters per km 2 category). Soil vulnerability categories that were assigned, a priori, based on published soil texture and composition did not accurately predict the impact of UTRs on soil, indicating that empirical methods may be better suited for identifying severity of compaction. While the estimates of UTR encounter frequencies were greater using the random transects than the targeted assessments for a relatively short period of time, it is difficult to determine whether this difference is dependent on greater cross-border activity, differences in technique, or from confounding environmental factors. Future surveys using standardized sampling techniques would increase accuracy.

Arizona↗

USGS2022

Differences in population characteristics and modeled response to harvest regulations in reestablished Appalachian Walleye populations

Historically, the Monongahela, Tygart, and Cheat River watersheds in West Virginia were impaired by acidification from acid mine drainage and Walleye Sander vitreus were extirpated from these watersheds by the 1940s. Walleye were reestablished after water quality improvements following passage of environmental legislation and subsequent reintroduction efforts. We compared population characteristics, with emphasis on growth, of Walleye and used modeling to predict the potential effects of harvest regulations in the Monongahela River and two main-stem reservoirs in the Cheat River and Tygart River watersheds. Statistical comparisons of von Bertalanffy growth curves and relative growth indices indicated that Walleye growth significantly differed across all water bodies. Relative growth index results suggested that Walleye growth was above average in Cheat Lake, average in the Monongahela River, and below average in Tygart Lake relative to other North American populations. Growth was negatively correlated with Walleye relative abundance and positively correlated with estimates of productivity (total phosphorus, chlorophyll a ). Walleye diets significantly differed across all water bodies, with diets dominated by Yellow Perch Perca flavescens and Gizzard Shad Dorosoma cepedianum in Cheat Lake, where growth was fastest. Population modeling suggested that effects of exploitation on yield, spawning potential, and size structure were similar under regulations of no length limit and a minimum length limit (381 mm). Models suggested that removing length limits in Tygart Lake could increase angler harvest opportunities and pose minimal threat to the fishery. Models suggested that a protected slot limit could provide increased protection to the spawning potential of Cheat Lake and the Monongahela River populations. Additionally, models predicted that a protected slot limit could increase the number of large (>630-mm) Walleye in these waters. Our findings demonstrate the different characteristics that Walleye populations can develop after reestablishment based on abiotic and biotic conditions and the need for watershed-specific management.

West Virginia↗

USGS2021

Ensemble species distribution model identifies survey opportunities for at-risk bearded beaksedge (Rhynchospora crinipes) in the southeastern United States

Locating additional occurrences of at-risk species can inform assessments of their status and conservation needs (including potential legal protections). The perennial bearded beaksedge ( Rhynchospora crinipes ) ranges from Mississippi to North Carolina, but known occurrences are limited. Because of the species' apparent rarity, a model to identify areas with suitable habitat conditions for the species will allow conservationists to effectively prioritize and allocate scarce surveying resources. We used known occurrence records, a suite of environmental datasets, and four species distribution modeling techniques (generalized additive, GAM; maximum entropy, MaxEnt; generalized boosted, GBM; and weighted ensemble) to generate maps to inform surveys for R. crinipes . The ensemble approach improved predictive performance (AUC-PR = 0.95) compared to other techniques (individual model AUC-PR ranged from 0.7 to 0.8). We also obtained quantitative insights on the species' habitat relationships, including the likelihood of R. crinipes 's presence near Atlantic white cedar ( Chamaecyparis thyoides ) habitat and floodplains, which is consistent with prior field observations. The ensemble model indicated that 3.6% of the study area could be suitable habitat, but only 0.38% had high suitability. Small stream riparian habitats and Atlantic swamp forests in Alabama, Florida, and Georgia had the highest proportion of suitable areas. Prioritizing surveys in areas with model-indicated high habitat suitability is expected to reveal additional R. crinipes occurrences. We suggest surveying efforts for other at-risk species may benefit from using an ensemble modeling approach to identify and prioritize survey areas and improve ecological knowledge of these species.

Alabama, Florida, Georgia, Mississippi, North Caro↗

USGS2012

Glass wool filters for concentrating waterborne viruses and agricultural zoonotic pathogens

The key first step in evaluating pathogen levels in suspected contaminated water is concentration. Concentration methods tend to be specific for a particular pathogen group, for example US Environmental Protection Agency Method 1623 for Giardia and Cryptosporidium1, which means multiple methods are required if the sampling program is targeting more than one pathogen group. Another drawback of current methods is the equipment can be complicated and expensive, for example the VIRADEL method with the 1MDS cartridge filter for concentrating viruses2. In this article we describe how to construct glass wool filters for concentrating waterborne pathogens. After filter elution, the concentrate is amenable to a second concentration step, such as centrifugation, followed by pathogen detection and enumeration by cultural or molecular methods. The filters have several advantages. Construction is easy and the filters can be built to any size for meeting specific sampling requirements. The filter parts are inexpensive, making it possible to collect a large number of samples without severely impacting a project budget. Large sample volumes (100s to 1,000s L) can be concentrated depending on the rate of clogging from sample turbidity. The filters are highly portable and with minimal equipment, such as a pump and flow meter, they can be implemented in the field for sampling finished drinking water, surface water, groundwater, and agricultural runoff. Lastly, glass wool filtration is effective for concentrating a variety of pathogen types so only one method is necessary. Here we report on filter effectiveness in concentrating waterborne human enterovirus, Salmonella enterica, Cryptosporidium parvum, and avian influenza virus.

Journal of Visualized Experiments↗

USGS2020

In situ benthic nutrient flux and sediment oxygen demand in Barnegat Bay, New Jersey

The U.S. Geological Survey, in cooperation with the New Jersey Department of Environmental Protection, measured sediment oxygen demand (SOD) and benthic nutrient fluxes throughout Barnegat Bay, New Jersey. SOD was determined in situ using chambers equipped with optical dissolved oxygen sensors. The benthic nutrient fluxes of ammonia (NH3), nitrite + nitrate (plus ions; here, referred to as NO32), soluble reactive phosphorous (SRP), and dissolved silica (SiO2) were measured with in situ equilibrium dialysis samplers. Measurements were made at nine stations around the periphery and at three mid-Bay locations from August 2012 to October 2013. The SOD ranged from −1.5 to −8.4 g of oxygen (O2) m−2 d−1. The SOD rates varied as a function of water temperature and followed the van't Hoff rate equation for change in reaction rate with temperature, with a temperature coefficient (Θ) that varied among sites and averaged 1.083. The highest SOD rates in the bay were measured near the mouth of the Toms River embayment. Concentrations in the upper 1 m of sediment pore water were found up to 23 mg N L−1 for NH4+ and 6.7 mg P L−1 for SRP. Maximum measured fluxes into the overlying water were 3.0 × 10−2 g NH3–N m−2 d−1, 7.0 × 10−4 g NO32–N m−2 d−1, 1.9 × 10−3 g P m−2 d−1, and 3.6 × 10−3g SiO2 m−2 d−1. Using the measured benthic N and P fluxes, daily nutrient inputs derived from sediment recycling are shown to be comparable in scale to freshwater tributary inputs to the bay.

New Jersey↗

USGS2018

Temporal variation in breeding season survival and cause-specific mortality of lesser prairie-chickens

The lesser prairie-chicken Tympanuchus pallidicinctus has experienced significant declines in distribution and abundance since the early 1900s. A severe and prolonged drought from 2009 to 2013 resulted in further declines in population numbers and despite improved environmental and habitat conditions since 2013, populations of lesser prairie chickens have shown little improvement. To investigate whether breeding season survival of lesser prairie-chickens in eastern New Mexico could be driving this response, we developed the following objectives: 1) estimate male and female breeding-season survival; 2) determine whether male and female survival varies temporally among lekking, nesting, and brood-rearing periods; and 3) determine cause-specific mortality during the breeding season. We captured and radiocollared 76 lesser prairie-chickens (50 male, 26 female) during spring of 2014 and 2015 and estimated their survival throughout the breeding season (15 March–31 August). Male survival was nearly double that of females in both years (0.79–0.81 and 0.38–0.45, respectively). Males had similar survival across all periods (lekking, postlekking, late summer: 0.89–0.95). Females had the greatest period-specific survival during lekking and brood rearing (0.87 ± 0.08 and 0.85 ± 0.10, respectively) relative to the nesting period (0.58 ± 0.11). Mammalian predation was the primary cause of mortality in both years. Our results indicate that in New Mexico 1) lesser prairie-chicken breeding season survival was consistent with geographically similar studies, 2) females have lower survival during the nesting period, and 3) female lesser prairie-chicken survival was lower than male survival regardless of time period. Management actions that provide and protect high-quality nesting habitat may help ensure that female survival is maximized during the nesting period.

New Mexico↗

USGS2026

A post-restoration evaluation of fish spawning on Coreyon Reef in Saginaw Bay, Lake Huron

Habitat diversity is important to fisheries for promoting resiliency to interannual environmental variation. Historical land use change resulting in increased sedimentation has impaired fish rock reef habitats in Saginaw Bay, Lake Huron. Pursuant to the recovery of Saginaw Bay’s walleye population, and to benefit other species, came the decision to restore the offshore habitat Coreyon Reef, a 0.8 ha rock reef complex. Following a pre-restoration assessment in 2014–2016 and construction in 2019, we conducted a comprehensive assessment from fall 2020 to spring 2022 to document the restored habitat’s viability for fish spawning. This assessment featured two objectives: (1) to evaluate reproductive usage by lake whitefish and walleye, and (2) to evaluate their corresponding egg incubation environment. We sampled directly on Coreyon Reef and at nearby unrestored control sites for comparison, with gears standardized to the pre-restoration assessment. We confirmed spawning of lake whitefish and walleye on the restored reef less than 2 years post-construction. Relative to the pre-restoration assessment, peak egg deposition increased substantially for walleye and marginally for lake whitefish. However, concurrent reproductive utilization at nearby unrestored sites was consistent or even greater than directly on the restored site. Dissolved oxygen concentration was sufficient for embryo development, but invasive round goby were abundant and consumed eggs. The fish assemblage at our sampling sites was consistent before and after restoration. We predict eggs deposited on the restored site have improved survival relative to unrestored sites, as the new reef structure may protect incubating embryos from predation and sedimentation.

Michigan↗

USGS2020

Parsing the effects of demography, climate, and management on recurrent brucellosis outbreaks in elk

1. Zoonotic pathogens can harm human health and well-being directly or by impacting livestock. Pathogens that spillover from wildlife can also impair conservation efforts if humans perceive wildlife as pests. Brucellosis, caused by the bacterium Brucella abortus, circulates in elk and bison herds of the Greater Yellowstone Ecosystem and poses a risk to cattle and humans. Our goal was to understand the relative effects of climatic drivers, host demography, and management control programs on disease dynamics. 2. Using >20 years of serologic, demographic, and environmental data on brucellosis in elk, we built stochastic compartmental models to assess the influences of climate forcing, herd immunity, population turnover, and management interventions on pathogen transmission. Data were collected at feedgrounds visited in winter by free-ranging elk in Wyoming, USA. 3. Snowpack, hypothesized as a driver of elk aggregation and thus brucellosis transmission, was strongly correlated across feedgrounds. We expected this variable to drive synchronized disease dynamics across herds. Instead, we demonstrate asynchronous epizootics driven by variation in demographic rates. 4. We evaluated the effectiveness of test-and-slaughter of seropositive female elk at two feedgrounds. Test-and-slaughter temporarily reduced herd-level seroprevalence but likely reduced herd immunity while removing few infectious individuals, resulting in subsequent outbreaks once the intervention ceased. We simulated an alternative strategy of removing seronegative female elk and found it would increase herd immunity, yielding fewer infections. We evaluated a second experimental treatment wherein feeding density was reduced at one feedground, but we found no evidence for an effect despite a decade of implementation. 5. Synthesis and applications: Positive serostatus is often weakly correlated with infectiousness but is nevertheless used to make management decisions including lethal removal in wildlife disease systems. We show how this can have adverse consequences whereas efforts that maintain herd immunity can have longer-term protective effects. Climatic drivers may not result in synchronous disease dynamics across populations unless vital rates are also similar because demographic factors have a large influence on disease patterns.

Idaho, Montana, Wyoming↗

USGS2026

When the desert dries: Rainfall drives conflicts and conservation challenges for onager (Equus hemionus onager)

Increasingly, the conservation of large and wide-ranging animals is challenged by environmental variability, static boundaries of protected areas, and the expansion of human activities. The Critically Endangered Onager ( Equus hemionus onager ) exemplifies these issues in Qatrouiyeh National Park (QNP) and the surrounding Bahram-e-Goor Protected Area (BPA) in Iran. Using GPS telemetry data from 9 adult females tracked over 2 years, we examined seasonal patterns in movement and incursions into cultivated lands in 2017 and 2018. Net squared displacement analyses indicated that most individuals exhibited range-resident behavior with occasional nomadic movements, with no evidence for migration (i.e., predictable movements to and from distinct seasonal ranges). Both monthly home range size and monthly movement rate varied seasonally, peaking in late spring and early summer (May–July). Individual home ranges were between 257 and 1,928 km 2 , while the extrapolated population-level home range (718 km 2 ; 95% confidence interval = 276–1368) extended well outside QNP, covering large portions of the BPA. Occurrence distributions also expanded beyond the protected area into adjacent cultivated lands, highlighting the use of human-occupied areas by onagers. We recorded 2,285 (out of 72,168) GPS locations within cultivated lands and their surrounding 50 m buffer, with 60% of these incursions occurring immediately adjacent to QNP. Most incursions occurred at night and were strongly associated with both season and cumulative rainfall over the preceding 9 months. These findings emphasize how rainfall-driven variability in resource dynamics shapes the spatial distribution and behavior of onagers, thus elevating the risk of conflict with humans. The scale and seasonality of Onager movements highlight the need for flexible, landscape-level conservation strategies that extend beyond fixed park boundaries to encompass critical habitats and to mitigate conflict across the broader region.

Bahram-e-Goor Protected Area, Qatrouiyeh National ↗

USGS2014

A review of environmental impacts of salts from produced waters on aquatic resources

Salts are frequently a major constituent of waste waters produced during oil and gas production. These produced waters or brines must be treated and/or disposed and provide a daily challenge for operators and resource managers. Some elements of salts are regulated with water quality criteria established for the protection of aquatic wildlife, e.g. chloride (Cl − ), which has an acute standard of 860 mg/L and a chronic standard of 230 mg/L. However, data for establishing such standards has only recently been studied for other components of produced water, such as bicarbonate (HCO 3 − ), which has acute median lethal concentrations (LC50s) ranging from 699 to > 8000 mg/L and effects on chronic toxicity from 430 to 657 mg/L. While Cl− is an ion of considerable importance in multiple geographical regions, knowledge about the effects of hardness (calcium and magnesium) on its toxicity and about mechanisms of toxicity is not well understood. A multiple-approach design that combines studies of both individuals and populations, conducted both in the laboratory and the field, was used to study toxic effects of bicarbonate (as NaHCO 3 ). This approach allowed interpretations about mechanisms related to growth effects at the individual level that could affect populations in the wild. However, additional mechanistic data for HCO 3 − , related to the interactions of calcium (Ca 2 + ) precipitation at the microenvironment of the gill would dramatically increase the scientific knowledge base about how NaHCO 3 might affect aquatic life. Studies of the effects of mixtures of multiple salts present in produced waters and more chronic effect studies would give a better picture of the overall potential toxicity of these ions. Organic constituents in hydraulic fracturing fluids, flowback waters, etc. are a concern because of their carcinogenic properties and this paper is not meant to minimize the importance of maintaining vigilance with respect to potential organic contamination.

International Journal of Coal Geology↗

USGS2008

Land use and the structure of western US stream invertebrate assemblages: Predictive models and ecological traits

Inferences drawn from regional bioassessments could be strengthened by integrating data from different monitoring programs. We combined data from the US Geological Survey National Water-Quality Assessment (NAWQA) program and the US Environmental Protection Agency Wadeable Streams Assessment (WSA) to expand the scope of an existing River InVertebrate Prediction and Classification System (RIVPACS)-type predictive model and to assess the biological condition of streams across the western US in a variety of landuse classes. We used model-derived estimates of taxon-specific probabilities of capture and observed taxon occurrences to identify taxa that were absent from sites where they were predicted to occur (decreasers) and taxa that were present at sites where they were not predicted to occur (increasers). Integration of 87 NAWQA reference sites increased the scope of the existing WSA predictive model to include larger streams and later season sampling. Biological condition at 336 NAWQA test sites was significantly (p < 0.001) associated with basin land use and tended to be lower in basins with intensive landuse modification (e.g., mixed, urban, and agricultural basins) than in basins with relatively undisturbed land use (e.g., forested basins). Of the 437 taxa observed among reference and test sites, 180 (41%) were increasers or decreasers. In general, decreasers had a different set of ecological traits (functional traits or tolerance values) than did increasers. We could predict whether a taxon was a decreaser or an increaser based on just a few traits, e.g., desiccation resistance, timing of larval development, habit, and thermal preference, but we were unable to predict the type of basin land use from trait states present in invertebrate assemblages. Refined characterization of traits might be required before bioassessment data can be used routinely to aid in the diagnoses of the causes of biological impairment. ?? 2008 by The North American Benthological Society.

Arizona, California, Colorado, Idaho, Montana, New↗

USGS2020

A comparison of E. coli concentration estimates quantified by the EPA and a Michigan laboratory network using EPA Draft Method C

We evaluated data from 10 laboratories that analyzed water samples from 82 recreational water sites across the state of Michigan between 2016 and 2018. Water sample replicates were analyzed by experienced U.S. Environmental Protection Agency (EPA) analysts and Michigan laboratories personnel, many of whom were newly trained, using EPA Draft Method C—a rapid quantitative polymerase chain reaction (qPCR) technique that provides same day Escherichia coli ( E. coli ) concentration results. Beach management decisions (i.e. remain open or issue an advisory or closure) based on E. coli concentration estimates obtained by Michigan labs and by the EPA were compared; the beach management decision agreed in 94% of the samples analyzed. We used the Wilcoxon one-sample signed rank test and nonparametric quantile regression to assess (1) the degree of agreement between E. coli concentrations quantified by Michigan labs versus the EPA and (2) Michigan lab E. coli measurement precision, relative to EPA results, in different years and water body types. The median quantile regression curve for Michigan labs versus EPA approximated the 1:1 line of perfect agreement more closely as years progressed. Similarly, Michigan lab E. coli estimates precision also demonstrated yearly improvements. No meaningful difference was observed in the degree of association between Michigan lab and EPA E. coli concentration estimates for inland lake and Great Lakes samples (median regression curve average slopes 0.93 and 0.95, respectively). Overall, our study shows that properly trained laboratory personnel can perform Draft Method C to a degree comparable with experienced EPA analysts. This allows health departments that oversee recreational water quality monitoring to be confident in qPCR results generated by the local laboratories responsible for analyzing the water samples.

Journal of Microbiological Methods↗

USGS2011

Fish community and bioassessment responses to stream network position

If organisms move beyond the boundaries of local sampling units, regional metacommunity dynamics could undermine the ability of bioassessment studies to characterize local environmental quality. We tested the prediction that fish dispersal influences local fish community structure and bioassessment metrics as a function of site position within stream networks. We evaluated fish community data from the US Environmental Protection Agency's Regional Environmental Monitoring and Assessment Program in West Virginia, USA, to compare the influences of stream network position, ecoregion, basin, and stream size on local fish community composition. We assigned sites to 1 of 3 stream network positions: 1) main channels (MC, n = 12) encompassed streams with upstream catchment areas >200 km 2 , 2) mainstem tributaries (MT, n = 43) flowed into MC-sized confluences within 15 fluvial km, 3) headwater tributaries (HT, n = 31) lacked such riverine confluences within 15 fluvial km. MT and HT sites had similar upstream catchment sizes and landuse gradients, but species richness was greater in MT sites than HT sites, whereas MT and MC sites were not different in this regard. Three bioassessment metrics were greater in MT sites than HT sites (intolerant species richness, cyprinid species richness, benthic species richness), but a multimetric index of biotic integrity did not differ among stream network positions. Ordinations revealed that fish community composition was organized primarily by zoogeographic basin (Monongahela River basin, New River basin, Ohio River basin), ecoregion (Central Appalachian Plateau, Western Appalachian Plateau, Ridge and Valley), and stream size. Riverine specialists were more abundant in MT than HT sites and were more abundant in basins connected to the Ohio River than in basins isolated from the Ohio River by a large waterfall (New River). Our results suggest that contemporary dispersal among streams influences fish community composition over small spatial scales (10 1 km), historical dispersal constrained by zoogeographic barriers influences community structure over larger areas (10 2 km), and contemporary dispersal by fishes influences certain metrics commonly used in bioassessment programs.

Journal of the North American Benthological Societ↗

USGS2023

Integrated rangeland fire management strategy actionable science plan completion assessment— Climate and weather topic, 2015–20

Loss and degradation of sagebrush ( Artemisia spp.) rangelands due to an accelerated invasive annual grass-wildfire cycle and other stressors are significant management, conservation, and economic issues in the western U.S. These sagebrush rangelands comprise a unique biome spanning 11 states, support over 350 wildlife species, and provide important ecosystem services that include stabilizing the economies of western communities. Impacts to sagebrush ecosystem processes over large areas due to the annual grass-wildfire cycle necessitated the development of a coordinated, science-based strategy for improving efforts to achieve long-term protection, conservation, and restoration of sagebrush rangelands, which was framed in 2015 under the Integrated Rangeland Fire Management Strategy (IRFMS). Central to this effort was the development of an Actionable Science Plan (Plan) that identified 37 priority science needs (hereinafter, “Needs”) for informing the actions proposed under the five topics (Fire, Invasives, Restoration, Sagebrush and Sage-Grouse ( Centrocercus urophasianus ), Climate and Weather) that were part of the collective focus of the IRFMS. Notable keys to this effort were identification of the Needs co-produced by managers and researchers, and a focus on resulting science being “actionable.” Substantial investments aimed at fulfilling the Needs identified in the Plan have been made since its release in 2016. While the state of the science has advanced considerably, the extent to which knowledge gaps remain relative to identified Needs is relatively unknown. Moreover, new Needs have likely emerged since the original strategy as results from actionable science reveal new questions and possible (yet untested) solutions. A quantifiable assessment of the progress made on the original science Needs can identify unresolved gaps and new information that can help inform prioritization of future research efforts. This report details a systematic literature review that evaluated how well peer-reviewed journal articles and formal technical reports published between January 1, 2015, and December 31, 2020, addressed four Needs identified under the Climate and Weather topic in the Plan. The topic outlined research Needs broadly focused on understanding the potential effects of climate change on vegetative resilience to inform restoration of sagebrush rangelands. We established the level of progress towards addressing each Need following a standardized set of criteria, and developed summaries detailing how research objectives nested within Needs identified in the Plan (hereinafter, “Next Steps”) were either addressed well, partially addressed or remain outstanding (that is, addressed poorly) in the literature through 2020. Our searches resulted in the inclusion of 92 science products that at least partially addressed a Need identified in the Climate and Weather topic. The Needs that were well and partially addressed included: studies of the complex set of climatic relationships that influence sagebrush rangeland restoration and seeding success; the identification of seed collection areas across the range of environmental variability inhabited by target restoration species; and develop predictive models to assess targeted restoration species’ responses to mid-century climatic conditions. The Need addressed poorly was the identification of native plant species, genotypes and ecotypes, and seed mixes that may be resilient to a changing climate. The information provided in this assessment will assist updating the Plan, and can inform updates of other relevant science planning documents as needed.

Open-File Report↗

USGS2025

Relative abundance, seasonal occurrence, and distribution of marine birds in the northern Gulf of Mexico

Marine birds in the U.S. Gulf of Mexico have long been poorly studied. Given statutory obligations to protect migratory birds and endangered species, three broad-scale vessel and aerial programs initiated since 2010 have now surveyed the entire northern Gulf. Vessel coverage alone exceeds 700 d and 74,000 km of observer effort using 300-m strip transects. We supplemented these survey data with earlier, smaller-scale studies, eBird checklists, literature reviews, and other less accessible sources to create snapshot summaries of relative abundance, seasonal occurrence, and regional distribution for 117 taxa of marine and water birds reported from the northern Gulf (113 of which were substantiated with physical evidence). Using taxonomic and functional criteria, we identified 56 taxa characteristic of open shelf, slope, and pelagic waters (federal jurisdiction), 41 taxa with primarily coastal affinities (state and federal jurisdiction), and 20 taxa of sea and diving ducks. High species richness of marine birds in the northern Gulf is attributed to (1) a temperate-to-tropical gradient facilitating diverse marine environments year-round; (2) varied geographic origins of marine bird species using the Gulf; and (3) a mostly enclosed sea basin acting as a vagrant trap for wide-ranging species. Our taxonomic list and status updates seek to bridge information gaps for marine birds now subject to accelerated commercial uses of this region's continental shelf, including newly proposed offshore wind energy development. Other applications include guiding risk and vulnerability assessments of Gulf marine birds, providing core content for seabird observer training, and prioritizing environmental impact reviews and monitoring programs in offshore energy construction and operations plans.

Marine Ornithology: Journal of Seabird Research an↗

USGS1996

Hazard ranking of contaminated sediments based on chemical analysis, laboratory toxicity tests, and benthic community composition: Prioritizing sites for remedial action

The U.S. Environmental Protection Agency (U.S. EPA) organized a research program to assess the extent of and possible methods for managing contaminated sediments. As part of this program, we developed a method by which multiple forms of information on sediment contamination (i.e., chemistry, laboratory toxicity, and benthic community composition) could be combined to rank the relative hazard to aquatic life of a series of sediment samples. The process that was developed incorporates chemistry and bioavailability into the ranking as toxic units in pore water based on U.S. EPA Ambient Water Quality Criteria (AWQC). Laboratory toxicity is incorporated into the ranking process as mean response relative to control response. Benthic community information is incorporated into the ranking process through the use of relative tolerance to pollution among benthic invertebrate taxa, from which the mean tolerance to pollution of the benthic community is calculated. The three resulting ranks are then averaged to produce a relative ranking of risk to aquatic life among sediment samples. Our results demonstrate that, as long as a moderate list of laboratory toxicity test results are included in the ranking process (i.e., tests from a fish, a zooplankter, a benthic invertebrate, a phytoplankter, and a microbe), the resultant rankings among samples does not significantly change with inclusion of more laboratory toxicity test results. Without any benthic community structure information, with only laboratory toxicity test results from Microtox, ® and with only a short list of chemicals, relative ranking among sites changes drastically. Our results demonstrate the general utility of the ranking process as one way of assessing the relative hazard among many sites when resource limitations necessitate prioritization of sites for remediation.

Journal of Great Lakes Research↗

USGS2007

Natural landscape and stream segment attributes influencing the distribution and relative abundance of riverine smallmouth bass in Missouri

Protecting and restoring fish populations on a regional basis are most effective if the multiscale factors responsible for the relative quality of a fishery are known. We spatially linked Missouri's statewide historical fish collections to environmental features in a geographic information system, which was used as a basis for modeling the importance of landscape and stream segment features in supporting a population of smallmouth bass Micropterus dolomieu. Decision tree analyses were used to develop probability-based models to predict statewide occurrence and within-range relative abundances. We were able to identify the range of smallmouth bass throughout Missouri and the probability of occurrence within that range by using a few broad landscape variables: the percentage of coarse-textured soils in the watershed, watershed relief, and the percentage of soils with low permeability in the watershed. The within-range relative abundance model included both landscape and stream segment variables. As with the statewide probability of occurrence model, soil permeability was particularly significant. The predicted relative abundance of smallmouth bass in stream segments containing low percentages of permeable soils was further influenced by channel gradient, stream size, spring-flow volume, and local slope. Assessment of model accuracy with an independent data set showed good concordance. A conceptual framework involving naturally occurring factors that affect smallmouth bass potential is presented as a comparative model for assessing transferability to other geographic areas and for studying potential land use and biotic effects. We also identify the benefits, caveats, and data requirements necessary to improve predictions and promote ecological understanding. ?? Copyright by the American Fisheries Society 2007.

North American Journal of Fisheries Management↗