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High-Flow Experimental Outcomes to Inform Everglades Restoration, 2010–22

The Decompartmentalization Physical Model (DPM) was an experimental facility in the central Everglades operated between 2010 and 2022 to release high flows through a levee-enclosed area of degraded ridge and slough wetland that had been isolated from flow for sixty years. The purpose of DPM experimental program was to make measurements before, during, and after seasonal high-flow releases that could help guide the Congressionally authorized Everglades restoration project known as the Decompartmentalization and Sheet Flow Enhancement Project. The DPM facility was operated by the South Florida Water Management District, with the U.S. Geological Survey (USGS) and several universities participating in experimental design and leading aspects of the research. The USGS research at DPM focused on measuring high-flow hydraulics and its sedimentary and ecological responses in downstream wetlands. USGS investigated interactions between flow and vegetation and microtopography that influenced flow velocity and water depth, bed shear stress, sediment entrainment, and the resulting downstream transport of suspended sediment and fate of particle-associated phosphorus. USGS also investigated high-flow changes in water-column mixing and gas exchange and resulting effects on metabolism of the aquatic ecosystem (primary productivity and respiration). USGS also investigated effects of built structures such as levee gaps that were constructed to reconnect levee-enclosed basins. This report describes the methods and results of the USGS-led data collection at DPM. The USGS studies at DPM have identified factors that influence effectiveness of restoration, specifically how high-flow releases maximize sheet flow and affect sediment and nutrient dynamics while minimizing undesirable outcomes caused by past management that bypassed wetlands by conveying polluted water through canals to ecologically sensitive downstream areas. The DPM high-flow experiments reconnected the Water Conservation Area 3A and Water Conservation Area 3B basins, and it therefore has become a central feature of the restoration’s Decompartmentalization and Sheet Flow Enhancement Project. DPM’s scientific findings have already influenced the adaptive management of Everglades restoration in guiding elements of the final design and implementation of the Central Everglades Planning Project-South. In addition to serving Everglades restoration, the DPM has the potential to influence similar adaptive management programs throughout the nation’s network of federal and state-managed river corridors, floodplains, and riparian ecosystems.

Florida

Climate-resource scenarios to inform climate change adaptation in Wrangell-St. Elias National Park and Preserve: Summary of 2021 climate change scenario planning

This report illustrates use of scenario planning as a climate change adaptation tool supporting Wrangell-St. Elias National Park and Preserve’s Resource Stewardship Strategy. The primary objective of scenario planning is to help resource managers and scientists make management and planning decisions informed by assessments of critical future uncertainties. This report outlines a process that synthesized future climate projections into three distinct but plausible and relevant climate summaries for the focal area and used them to develop climate-resource scenarios through participatory scenario planning. Initial steps identified the priority resource management topics and the corresponding related climate uncertainties. Next, local climate summaries were used to develop divergent climate futures: those that describe the broadest possible range of plausible conditions while capturing relevant uncertainty. The final phase further developed the climate futures and their resource implications. These participatory scenario planning exercises occurred virtually in fall (August–November) 2021. The climate-resource scenarios informed adaptation strategies in conjunction with the park’s Resource Stewardship Strategy development. The scope and complexity of this effort is unique but elements from the scenarios and resource implications have broad applicability to other large, protected areas in Alaska and Northwest Canada.

Alaska

Vegetation projections for Wind Cave National Park with three future climate scenarios: Final report in completion of Task Agreement J8W07100052

Introduction The effects of climate change on the natural resources protected by Parks will likely be substantial, but geographically variable, due to local variation in climate trajectories and differences among ecosystems in their vulnerability to climate change. The projections of general circulation models (GCMs) indicate the possible magnitude and direction of future climate change for a region, but the utility of these projections for more local scales, those of individual National Park Service (NPS) units, are more uncertain because the coarse-scale GCMs lack much of the topographic detail that alters local climates. In addition, complex, interacting effects of temperature, precipitation, atmospheric CO 2 concentrations, fire, and herbivores on the vegetation that is the foundational natural resource of many NPS units present challenges in assessing the effects of projected future climates on plant and animal assemblages managed by the NPS. In spring 2009, Wind Cave National Park (WICA) served as a case study in a workshop assessing the use of scenario planning as a tool for park management planning in the face of rapidly changing climate. One outcome of the workshop was the recognized need for quantitative models to better understand the range of possible vegetation changes under different future climates and management decisions. This report addresses this need; it describes our adaptation of a dynamic global vegetation model (DGVM) to WICA vegetation and the resulting projections of future vegetation under three future climate scenarios and 11 management scenarios determined by Park natural resource managers. Wind Cave National Park lies along a narrow transition zone between the ponderosa pine (Pinus ponderosa) forests of the Black Hills and the mixed grass prairie that once extended with few interruptions over the lower, gentler terrain, subject to warmer, drier climate to the east and south of the Park. The location and character of this transition is strongly influenced by fire frequency and intensity (Brown and Sieg 1999). Furthermore, the mixed grass prairie occupies a broader transition zone between eastern tallgrass prairie and the shortgrass prairie of the western Great Plains. The dominance of species characteristic of these two prairie types varies with soil moisture availability, evaporative demand, and recent grazing history (Cogan et al. 1999). In addition, Wind Cave lies near the midpoint of a long gradient of C 3 (cool season) grass dominance to the north and C 4 (warm season) grass dominance to the south. The ecotonal position of WICA may make it particularly sensitive to climate change. For example, small changes in fire frequency and/or intensity and the vigor of trees vs. grass could dramatically shift the proportions of these two lifeforms. The Park hydrology is also sensitive to changes in the balance between infiltration of precipitation and evapotranspiration, as on average, only a small fraction of annual precipitation reaches the deeper soil layers that feed permanent streamflow. The resources at risk at Wind Cave NP include the Cave itself, as well as small backcountry caves, a genetically important bison herd, and other prairie species including the black-tailed prairie dog and endangered black-footed ferrets. All of these resources will be directly affected by climate change impacts on vegetation and hydrology. Natural resource management challenges at WICA are substantial, diverse, and intertwined. Aboveground, the park has been recognized as exemplary for its high quality vegetation (Marriot et al. 1999), though the park is relatively small for the diversity of vegetation types and species that it supports. Even without a changing climate, maintaining the integrity of the plant communities is complicated by the park’s legislated responsibility to maintain viable populations of bison, elk and pronghorn. In addition, the federally endangered black-footed ferret was recently re-introduced to the park. This species requires large extents of prairie dog towns for prey and habitat. Prairie dogs impact vegetation by constant clipping, grazing and soil disturbance, thereby affecting plant composition and productivity. Moreover, naturally high interannual climate variability and the strong influence of precipitation on grass productivity in this region combine to yield high interannual variability in the amount of forage available for the wildlife that the park is tasked to maintain. Finally, fire, which is now primarily controlled by WICA and NPS Northern Great Plains fire management programs, is intertwined with all other natural resource issues at WICA, as it can impact prairie dog colony and forest expansion, ungulate foraging behavior, invasive plant species, and hydrological processes. Although not capable of capturing all of these complexities, dynamic vegetation models do provide a means for quantitatively projecting vegetation futures in future climates under plausible fire and grazing regimes. Our work uses the DGVM MC1 to simulate the effects of future climate projections and management practices on the vegetation of WICA. MC1 is designed to project potential vegetation as influenced by natural processes and hence is appropriate for national parks, where conservation of native biota and ecosystems is of great importance. Since the initial application of MC1 to a small portion of WICA (Bachelet et al. 2000), the model has been altered to improve model performance with the inclusion of dynamic fire. Applying this improved version to WICA required substantial recalibration, during which we have made a number of improvements to MC1 that will be incorporated as permanent changes. In this report we document these changes and our calibration procedure following a brief overview of the model. We compare the projections of current vegetation to the current state of the park and present projections of vegetation dynamics under future climates downscaled from three GCMs selected to represent the existing range in available GCM projections. In doing so, we examine the consequences of different management options regarding fire and grazing, major aspects of biotic management at Wind Cave.

South Dakota

Results of a workshop concerning ecological zonation in bottomland hardwoods

Under Section 404 of the Clean Water Act, the U.S. Environmental Protection Agency (EPA) has regulatory responsibilities concerning the discharge of dredged or fill material into the Nation's waters. In addition to its advisory role in the U.S. Army Corps of Engineers' permit program, EPA has a number of specific authorities, including formulation of the Section 404(b)(1) Guidelines, use of Section 404(c) to prohibit disposal at particular sites, and enforcement actions for unauthorized discharges. A number of recent court cases focus on the geographic scope of Section 404 jurisdiction in potential bottomland hardwood (BLH) wetlands and the nature of landclearing activities in these areas that require a permit under Section 404. Accordingly, EPA needs to establish the scientific basis for implementing its responsibilities under Section 404 in bottomland hardwoods. EPA is approaching this task through a series of workshops designed to provide current scientific information on bottomland hardwoods and to organize that information in a manner pertinent to key questions, including the following. What are the characteristics of bottomland hardwoods (in terms of hydrology, soils, vegetation, fish, wildlife, agricultural potential, and the like) and how can the functions (e.g., flood storage, water quality maintenance, detrital export) that they perform best be quantified? How do perturbations like landclearing, levee construction, and drainage impact the functions that bottomland hardwoods perform and how can these effects best be quantified? And finally, how significant are the impacts and how is their significance likely to change under various management scenarios? The first workshop in this series was held December 3-7, 1984, in St. Francisville, Louisiana. The workshop was attended by over 40 scientists and regulators (see ACKNOWLEDGMENTS section) and facilitated by the editors of this report under an Interagency Agreement between EPA and the U.S. Fish and Wildlife Service. The general objective of the workshop was to examine ways in which the structure and function of BLH ecosystems can be characterized and, in particular, to investigate the utility of a conceptual framework developed at a workshop held in Lake Lanier, Georgia, in 1980. In this framework, the transition from aquatic habitats to upland habitats through a BLH ecosystem is divided into six zones based on concomitant variation in the soil moisture regime and associated vegetation (Table 1). The zonation concept is of particular interest to EPA from at least two perspectives. The first is simply as a framework for organizing information. If the zones are discernible in the field, have recognizable characteristics, and perform identifiable functions, they might form a useful basis for tasks such as assessing the impacts of a particular site-specific activity. The second is the potential utility of the zonation concept in identifying the wetland portions of BLH communities. If the zones can be recognized in the field, and if one or more of them can be shown consistently to have wetland characteristics (i.e., perform functions, such as detrital export, often attributed to wetlands), while others do not, then the zones might have utility in identifying areas that fall under the jurisdiction of Section 404. The workshop itself was divided into two parts. The first was a series of papers in which authors described current research and data-synthesis activities in the context of the zonation concept. The second was a series of six workgroups in which participants discussed the zonation concept from the perspective of hydrology, soils, vegetation, fish, wildlife, and ecosystem processes. This report is a compilation of the written material from those workgroups, much of which was produced at the workshop. The formal papers presented in the first part of the workshop have been distributed to participants under separate cover, but are referenced in this report by citations such as: (Jones, workshop presentation).

Report

Proceedings of the Klamath Basin Science Conference, Medford, Oregon, February 1-5, 2010

This report presents the proceedings of the Klamath Basin Science Conference (February 2010). A primary purpose of the meeting was to inform and update Klamath Basin stakeholders about areas of scientific progress and accomplishment during the last 5 years. Secondary conference objectives focused on the identification of outstanding information needs and science priorities as they relate to whole watershed management, restoration ecology, and possible reintroduction of Pacific salmon associated with the Klamath Basin Restoration Agreement (KBRA). Information presented in plenary, technical, breakout, and poster sessions has been assembled into chapters that reflect the organization, major themes, and content of the conference. Chapter 1 reviews the major environmental issues and resource management and other stakeholder needs of the basin. Importantly, this assessment of information needs included the possibility of large-scale restoration projects in the future and lessons learned from a case study in South Florida. Other chapters (2-6) summarize information about key components of the Klamath Basin, support conceptual modeling of the aquatic ecosystem (Chapter 7), and synthesize our impressions of the most pressing science priorities for management and restoration. A wealth of information was presented at the conference and this has been captured in chapters addressing environmental setting and human development of the basin, hydrology, watershed processes, fishery resources, and potential effects from climate change. The final chapter (8) culminates in a discussion of many specific research priorities that relate to and bookend the broader management needs and restoration goals identified in Chapter 1. In many instances, the conferees emphasized long-term and process-oriented approaches to watershed science in the basin as planning moves forward.

California, Oregon

Developing an outcome-based biodiversity metric in support of the field to market project: Final report

Our objective was to create a metric that would calculate the relative impact of common commercial agricultural practices on terrestrial vertebrate richness. We sought to define impacts in fields (including field borders) of the southeastern region’s commercial production of corn, wheat, soy, and cotton. The metric is intended to serve as an educational tool, allowing producers to see how operational decisions made at the field level impact overall vertebrate species richness and to explore decision impacts to targeted species groups (e.g. game, pest, or beneficial species). Agricultural landscapes are often mistakenly thought to be unsuitable habitat for most species. However, as demonstrated by results reported here, even large-scale, conventional agricultural producers are potentially important partners in biodiversity conservation. Many vertebrate species do inhabit agricultural landscapes, benefitting from the provision of water, food, or shelter within cultivated fields and their immediate borders (e.g., Holland et al. 2012). In the Southeastern US, of the 613 terrestrial vertebrate species modeled by the Southeast Gap Analysis Program (SEGAP) (http://www.basic.ncsu.edu/segap/index.html), 263 utilize row crop and associated agricultural land cover classes as potential habitat (Box 1). While some species may be sensitive to certain operational practices (e.g., tillage, pest management, or field border management practices), others are generally tolerant, and some may benefit either directly or indirectly. For example, field margins and ditches often serve as semi-natural habitats providing foraging resources and shelter for vertebrates and are shown to positively influence species richness and abundance (Billeter et al. 2007; Herzon & Helenius 2008; Marshall & Moonen 2002; Shore et al. 2005; Weibull et al. 2003; Wuczyńskia et al. 2011). Biodiversity responses are, therefore, complex, as an individual species’ responses to agricultural production practices depends on that animal’s resource specialization, mobility, and life history strategies (Jeanneret et al. 2003a, b; Jennings & Pocock 2009). The knowledge necessary to define the biodiversity contribution of agricultural lands is specialized, dispersed, and nuanced, and thus not readily accessible. Given access to clearly defined biodiversity tradeoffs between alternative agricultural practices, landowners, land managers and farm operators could collectively enhance the conservation and economic value of agricultural landscapes. Therefore, Field to Market: The Keystone Alliance for Sustainable Agriculture and The Nature Conservancy jointly funded a pilot project to develop a biodiversity metric to integrate into Field to Market’s existing sustainability calculator, The Fieldprint Calculator (http://www. fieldtomarket.org/). Field to Market: The Keystone Alliance for Sustainable Agriculture is an alliance among producers, agribusinesses, food companies, and conservation organizations seeking to create sustainable outcomes for agriculture. The Fieldprint Calculator supports the Keystone Alliance’s vision to achieve safe, accessible, and nutritious food, fiber and fuel in thriving ecosystems to meet the needs of 9 billion people in 2050. In support of this same vision, our project provides proof-of-concept for an outcome-based biodiversity metric for Field to Market to quantify biodiversity impacts of commercial row crop production on terrestrial vertebrate richness. Little research exists examining the impacts of alternative commercial agricultural practices on overall terrestrial biodiversity (McLaughlin & Mineau 1995). Instead, most studies compare organic versus conventional practices (e.g. Freemark & Kirk 2001; Wickramasinghe et al. 2004), and most studies focus on flora, avian, or invertebrate communities (Jeanneret et al. 2003a; Maes et al. 2008; Pollard & Relton 1970). Therefore, we used an expert-knowledge-based approach to develop a metric that predicts expected impacts to shelter and forage resources, individual species, and overall biodiversity (species richness). This approach is modeled after an ecosystems services concept (WRI 2005), except that we examine services (i.e., resources) provided to vertebrate wildlife rather than service provided to the human population. SEGAP predicts species that are potentially present in an area given landscape-scale habitat availability, configuration, and context (e.g., patch size, proximity to resources, connectivity, potential for disturbance). Based on the prediction of species that may be potentially present, the impacts of management decisions within fields and around their borders can be analyzed based on the impact of those practices to the availability of species’ resources. The final metric provides an index of a producer’s relative impact, but perhaps even more importantly, the underlying database allows producers to explore details such as which species are most impacted or how alternative decisions would impact their score.

Technical Bulletin

Water-quality modeling of Klamath Straits Drain recirculation, a Klamath River wetland, and 2011 conditions for the Link River to Keno Dam reach of the Klamath River, Oregon

The upper Klamath River and adjacent Lost River are interconnected basins in south-central Oregon and northern California. Both basins have impaired water quality with Total Maximum Daily Loads (TMDLs) in progress or approved. In cooperation with the Bureau of Reclamation, the U.S. Geological Survey (USGS) and Watercourse Engineering, Inc., have conducted modeling and research to inform management of these basins for multiple purposes, including agriculture, endangered species protection, wildlife refuges, and adjacent and downstream water users. A water-quality and hydrodynamic model (CE-QUAL-W2) of the Link River to Keno Dam reach of the Klamath River for 2006–09 is one of the tools used in this work. The model can simulate stage, flow, water velocity, ice cover, water temperature, specific conductance, suspended sediment, nutrients, organic matter in bed sediment and the water column, three algal groups, three macrophyte groups, dissolved oxygen, and pH. This report documents two model scenarios and a test of the existing model applied to year 2011, which had exceptional water quality. The first scenario examined the water-quality effects of recirculating Klamath Straits Drain flows into the Ady Canal, to conserve water and to decrease flows from the Klamath Straits Drain to the Klamath River. The second scenario explicitly incorporated a 2.73×10 6 m 2 (675 acre) off-channel connected wetland into the CE-QUAL-W2 framework, with the wetland operating from May 1 through October 31. The wetland represented a managed treatment feature to decrease organic matter loads and process nutrients. Finally, the summer of 2011 showed substantially higher dissolved-oxygen concentrations in the Link-Keno reach than in other recent years, so the Link-Keno model (originally developed for 2006–09) was run with 2011 data as a test of model parameters and rates and to develop insights regarding the reasons for the improved water-quality conditions.

Oregon

Combined impacts of Black-crowned Night-Heron predation/disturbance and various management activities on Roseate Tern productivity in 2003, and testing of a video surveillance system for recording the diurnal and nocturnal behavior of terns and night-herons at Falkner Island, Stewart B. McKinney National Wildlife Refuge, Connecticut, in 2004: Report to U.S. Fish and Wildlife Service, Stewart B. McKinney National Wildlife Refuge, Westbrook, Connecticut and U.S. Fish and Wildlife Service, Region 5 Regional Office, Hadley, Massachusetts

Falkner Island (FICT), a unit of the U.S. Fish and Wildlife Service's Stewart B. McKinney National Wildlife Refuge (SBMNWR) since 1985, is located in Long Island Sound 5 km south of Guilford, CT. For more than three decades it has been the site of the only large breeding colony in Connecticut of the federally endangered Northwest Atlantic population of Roseate Terns (Sterna dougallii) and the state's largest colony of Common Terns (S. hirundo). Both species have been studied at this site since 1978 as part of the Falkner Island Tern Project (FITP), and since 1987 also as part of a regional Cooperative Roseate Tern Metapopulation Dynamics and Ecology Project (CRTMP), both coordinated by Dr. Jeffrey A. Spendelow of the U.S. Geological Survey's Patuxent Wildlife Research Center (USGS-PWRC). From 1997-2002 the Roseate Tern breeding population at this site declined by more than 50% from about 150 to about 70 nesting pairs, mostly as a result of the nocturnal predation and disturbance of tern chicks and eggs by Black-crowned Night-Herons (Nycticorax nycticorax). Here we report the results of research done with the goal of improving management of nocturnal predators and developing new practices/structures to reduce losses of tern eggs and chicks so as to prevent the abandonment of this site by Roseate Terns. Notification of release of the USGS 'Quick Response Funds' (QRF) that were to be used to support the part of this study entitled 'Nocturnal behavior/interactions of endangered Roseate Terns and Black-crowned Night-Herons', and final approval of the Study Plan for this research did not occur until after the breeding season in 2003 was well underway. As a result, some work will need to be completed during the 2004 field season. There are two major objectives of this study. The first is to collect basic information (a) on the nocturnal behavior and interactions of Roseate (and Common) Terns with predatory Black-crowned Night-Herons, and (b) on how the behavior of the night-herons and the behavior and productivity of the terns are affected by the activities of management personnel (or researchers) that may be moving around the island at night. The second objective is to develop new structures (or to modify existing ones) that can be used by adult Roseate Terns for nesting sites and/or by chicks as hiding sites so that tern eggs and chicks will be less susceptible to night-heron predation. Work on the development and comparative use of various man-made structures began prior to the start of the 2003 nesting season; work on the evaluation and testing of a video surveillance system to study the nocturnal behavior of the terns and night-herons began in June 2003. Reported here are (1) the results of work on the placement and use by Roseate Terns of several types of structures in different habitats, and (2) a description of the set-up, testing, and evaluation of a multi-camera video system to record tern and predator behavior during both day and night. Also given here is some additional information on other factors that affected the productivity of the Roseate Terns at FICT collected as part of the CRTMP which served as the underlying foundation for the additional work done with support of the 2003 Quick Response Funds.

Book

Monitoring nesting waterbirds for the South Bay Salt Pond Restoration Project—2024 breeding season

The San Francisco Bay supports thousands of breeding waterbirds annually and hosts large populations of American avocets ( Recurvirostra americana ), black-necked stilts ( Himantopus mexicanus ), and Forster’s terns ( Sterna forsteri ). These three species have relied largely on former commercial salt ponds in south San Francisco Bay, which provide wetland foraging habitat and island nesting habitat. The South Bay Salt Pond Restoration Project is in the process of restoring as much as 15,100 acres of these former salt ponds to tidal marsh and tidal mudflats. Although this restoration is expected to have numerous benefits, including providing habitat for tidal wetland-dependent species, improving water quality, buffering against storm surge, and protecting inland areas from sea level rise, the reduction in former salt-pond habitat and nesting islands may negatively affect breeding waterbirds. To address the reduction in former salt-pond habitat available to waterbirds, the South Bay Salt Pond Restoration Project will maintain some pond habitat for wildlife and provide enhancements such as the construction of new islands for nesting. The South Bay Salt Pond Restoration Project follows an adaptive management plan in which waterbird response to the changing landscape is monitored over time to ensure that existing breeding waterbird populations are maintained. In this report, we provide results of waterbird nest monitoring in south San Francisco Bay during the 2024 breeding season and present these results in the context of annual nest monitoring in south San Francisco Bay since 2005. Overall, Forster’s tern nest abundance in 2024 (1,808 nests) was the highest recorded between 2005 and 2024, and it maintained the high abundance first observed in 2022 (1,727 nests), which reversed the historically low abundance observed during 2015–17. In contrast, nest abundance remained at or near 20-year lows for American avocets (222 nests) and black-necked stilts (126 nests) in 2024, but both species had small increases in their nesting population sizes compared to 2022. In 2024, there were only 3 Forster’s tern, 5 American avocet, and 3 black-necked stilt major colony nesting sites, which is down from the annual averages of 6.6, 12.4, and 6.6 observed during 2005–09. Nest success (73 percent for American avocets, 54 percent for black-necked stilt, and 64 percent for Forster’s terns) increased compared to 2022 (30 percent for American avocets, 29 percent for black-necked stilt, and 53 percent for Forster’s terns) and during 2005–10 (37 percent for American avocets, 24 percent for black-necked stilt, and 61 percent for Forster’s terns). Nest success in 2024 was above (American avocets and black-necked stilts) or slightly below (Forster’s terns) baseline values established for the South Bay Salt Pond Restoration Project. Average egg-hatching success was lower for American avocets (86 percent) and Forster’s terns (86 percent) and similar for black-necked stilts (96 percent) than the values observed during 2005–10. Average clutch sizes for American avocets (3.87 eggs), black-necked stilts (3.88 eggs), and Forster’s terns (2.73 eggs) were greater than what was observed in 2022 and during 2005–10. Average nest-initiation dates in 2024 were substantially earlier among all three species (April 19 for American avocets, April 25 for black-necked stilts, and May 12 for Forster’s terns) than in 2022 (May 4 for American avocets, May 13 for black-necked stilts, and May 20 for Forster’s terns) and during 2005–10 (May 15 for American avocets, May 3 for black-necked stilts, and May 30 for Forster’s terns). Finally, the enhanced managed ponds with newly constructed islands (Ponds A16 and SF2) supported 52 percent of American avocet nests, 47 percent of black-necked stilt nests, and 94 percent of all the Forster’s tern nests recorded in south San Francisco Bay in 2024.

California

Practical guide to measuring wetland carbon pools and fluxes

Wetlands cover a small portion of the world, but have disproportionate influence on global carbon (C) sequestration, carbon dioxide and methane emissions, and aquatic C fluxes. However, the underlying biogeochemical processes that affect wetland C pools and fluxes are complex and dynamic, making measurements of wetland C challenging. Over decades of research, many observational, experimental, and analytical approaches have been developed to understand and quantify pools and fluxes of wetland C. Sampling approaches range in their representation of wetland C from short to long timeframes and local to landscape spatial scales. This review summarizes common and cutting-edge methodological approaches for quantifying wetland C pools and fluxes. We first define each of the major C pools and fluxes and provide rationale for their importance to wetland C dynamics. For each approach, we clarify what component of wetland C is measured and its spatial and temporal representativeness and constraints. We describe practical considerations for each approach, such as where and when an approach is typically used, who can conduct the measurements (expertise, training requirements), and how approaches are conducted, including considerations on equipment complexity and costs. Finally, we review key covariates and ancillary measurements that enhance the interpretation of findings and facilitate model development. The protocols that we describe to measure soil, water, vegetation, and gases are also relevant for related disciplines such as ecology. Improved quality and consistency of data collection and reporting across studies will help reduce global uncertainties and develop management strategies to use wetlands as nature-based climate solutions.

Wetlands

Proceedings of the first U.S. Geological Survey scientific information management workshop, March 21-23, 2006

In March 2006, the U.S. Geological Survey (USGS) held the first Scientific Information Management (SIM) Workshop in Reston, Virginia. The workshop brought together more than 150 SIM professionals from across the organization to discuss the range and importance of SIM problems, identify common challenges and solutions, and investigate the use and value of “communities of practice” (CoP) as mechanisms to address these issues. The 3-day workshop began with presentations of SIM challenges faced by the Long Term Ecological Research (LTER) network and two USGS programs from geology and hydrology. These presentations were followed by a keynote address and discussion of CoP by Dr. Etienne Wenger, a pioneer and leading expert in CoP, who defined them as "groups of people who share a passion for something that they know how to do and who interact regularly to learn how to do it better." Wenger addressed the roles and characteristics of CoP, how they complement formal organizational structures, and how they can be fostered. Following this motivating overview, five panelists (including Dr. Wenger) with CoP experience in different institutional settings provided their perspectives and lessons learned. The first day closed with an open discussion on the potential intersection of SIM at the USGS with SIM challenges and the potential for CoP. The second session began the process of developing a common vocabulary for both scientific data management and CoP, and a list of eight guiding principles for information management were proposed for discussion and constructive criticism. Following this discussion, 20 live demonstrations and posters of SIM tools developed by various USGS programs and projects were presented. Two community-building sessions were held to explore the next steps in 12 specific areas: Archiving of Scientific Data and Information; Database Networks; Digital Libraries; Emerging Workforce; Field Data for Small Research Projects; Knowledge Capture; Knowledge Organization Systems and Controlled Vocabularies; Large Time Series Data Sets; Metadata; Portals and Frameworks; Preservation of Physical Collections; and Scientific Data from Monitoring Programs. In about two-thirds of these areas, initial steps to forming CoP are now underway. The final afternoon included a panel in which information professionals, managers, program coordinators, and associate directors shared their perspectives on the workshop, on ways in which the USGS could better manage its scientific information, and on the use of CoP as informal mechanisms to complement formal organizational structures. The final session focused on developing the next steps, an action plan, and a communication strategy to ensure continued development.

Scientific Investigations Report

Annotated bibliography of scientific research on greater sage-grouse published since January 2015

The greater sage-grouse ( Centrocercus urophasianus ; hereafter GRSG) has been a focus of scientific investigation and management action for the past two decades. The 2015 U.S. Fish and Wildlife Service listing determination of “not warranted” was in part due to a large-scale collaborative effort to develop strategies to conserve GRSG populations and their habitat and to reduce threats to both. New scientific information augments existing knowledge and can help inform updates or modifications to existing plans for managing GRSG and sagebrush ecosystems. However, the sheer number of scientific publications can be a challenge for managers tasked with evaluating and determining the need for potential updates to existing planning documents. To assist in this process, the U.S. Geological Survey (USGS) has reviewed and summarized the scientific literature published since January 1, 2015. To identify articles and reports published about GRSG, we first conducted a structured search of three reference databases (Web of Science, Scopus, and Google Scholar) using the search term “greater sage-grouse.” We refined the initial list of products by (1) removing duplicates, (2) excluding products that were not published as research or scientific review articles in peer-reviewed journals or as formal government technical reports, and (3) retaining only those products for which GRSG or their habitat was a research focus. We summarized the contents of each product by using a consistent structure (background, objectives, methods, location, findings, and implications) and assessed the content of each product relevant to a list of 31 management topics. These topics include GRSG biology and habitat characteristics along with potential management actions, land uses, and environmental factors related to GRSG management and conservation. We also noted which articles/reports created new geospatial data. The final search was conducted on January 6, 2018, and application of our criteria resulted in the inclusion of 169 published products (2 of these products were published corrections to journal articles). The management topics most commonly addressed were GRSG behavior or demographics and GRSG habitat selection or habitat characteristics at broad or site scales. Few products addressed captive breeding, recreation, wild horses and burros, and range management structures (including fences). We include in this annotated bibliography the full citation, product summary, and management topics addressed by each product. The online version of this bibliography ( https://apps.usgs.gov/gsgbib/index.php ) is searchable by topic and location and includes links to the original publications. A substantial body of literature has been compiled based on research explicitly related to the conservation, management, monitoring, and assessment of GRSG. These studies may inform planning and management actions that seek to balance conservation, economic, and social objectives and manage diverse resource uses and values across the western United States. The review process for this product included requesting input on each summary from one or more authors of the original peer-reviewed article or report and a formal review of the entire document by three independent reviewers and, subsequently, the USGS Bureau Approving Official. This process is consistent with USGS Fundamental Science Practices.

Open-File Report

A Servicewide Benthic Mapping Program for National Parks

In 2007, the National Park Service (NPS) Inventory and Monitoring Program directed the initiation of a benthic habitat mapping program in ocean and coastal parks in alignment with the NPS Ocean Park Stewardship 2007-2008 Action Plan. With 74 ocean and Great Lakes parks stretching over more than 5,000 miles of coastline across 26 States and territories, this Servicewide Benthic Mapping Program (SBMP) is essential. This program will deliver benthic habitat maps and their associated inventory reports to NPS managers in a consistent, servicewide format to support informed management and protection of 3 million acres of submerged National Park System natural and cultural resources. The NPS and the U.S. Geological Survey (USGS) convened a workshop June 3-5, 2008, in Lakewood, Colo., to discuss the goals and develop the design of the NPS SBMP with an assembly of experts (Moses and others, 2010) who identified park needs and suggested best practices for inventory and mapping of bathymetry, benthic cover, geology, geomorphology, and some water-column properties. The recommended SBMP protocols include servicewide standards (such as gap analysis, minimum accuracy, final products) as well as standards that can be adapted to fit network and park unit needs (for example, minimum mapping unit, mapping priorities). SBMP Mapping Process. The SBMP calls for a multi-step mapping process for each park, beginning with a gap assessment and data mining to determine data resources and needs. An interagency announcement of intent to acquire new data will provide opportunities to leverage partnerships. Prior to new data acquisition, all involved parties should be included in a scoping meeting held at network scale. Data collection will be followed by processing and interpretation, and finally expert review and publication. After publication, all digital materials will be archived in a common format. SBMP Classification Scheme. The SBMP will map using the Coastal and Marine Ecological Classification Standard (CMECS) that is being modified to include all NPS needs, such as lacustrine ecosystems and submerged cultural resources. CMECS Version III (Madden and others, 2010) includes components for water column, biotic cover, surface geology, sub-benthic, and geoform. SBMP Data Archiving. The SBMP calls for the storage of all raw data and final products in common-use data formats. The concept of 'collect once, use often' is essential to efficient use of mapping resources. Data should also be shared with other agencies and the public through various digital clearing houses, such as Geospatial One-Stop (http://gos2.geodata.gov/wps/portal/gos). To be most useful for managing submerged resources, the SBMP advocates the inventory and mapping of the five components of marine ecosystems: surface geology, biotic cover, geoform, sub-benthic, and water column. A complete benthic inventory of a park would include maps of bathymetry and the five components of CMECS. The completion of mapping for any set of components, such as bathymetry and surface geology, or a particular theme (for example, submerged aquatic vegetation) should also include a printed report.

Open-File Report

A practical decision tool for marine bird mortality assessments

Given the rise in anthropogenic, environmental, and disease events contributing to marine bird mortality, there is a critical need to improve the rigor of mortality assessments. Deficits in data collection and mortality estimation can hinder a manager’s ability to document event scales and inform population level impacts. Therefore, to inform decisions required during activities such as conservation status assessments or harvest management, organizations may choose to incorporate mortality assessments into response plans. Resources, capacity, and assets to assess mortality vary across jurisdictions (federal, state, Indigenous, local, etc.), and clear guidance to support mortality assessments is often unavailable or not clearly addressed. Here, we present a decision support tool to help managers identify and evaluate survey options to assess bird mortality in a diverse array of scenarios. The objective of the decision tool is to improve data collection and availability which will increase the ability to robustly estimate mortality, given situation-specific attributes and constraints. This decision tool is designed to guide the response when a mortality event is initially encountered and offers suggestions for assessment and reporting procedures in the absence of other guidance or to complement existing protocols. The decision tool is also meant to inform decision making for response determination and resource allocation. The tool facilitates examination of options for further assessment and monitoring which users determine by examining questions pertaining to species prioritization, mortality spatial extent, and the potential magnitude of impacts on affected species. Finally, identification of appropriate survey methods, that address imperfect detection when a complete census is not possible, are determined by exploring location, spatial and temporal extent, and the type of species affected. Ultimately, this tool aims to facilitate and improve the standardization of mortality assessments, equipping managers with a practical resource to navigate the decision-making process for marine bird mortality estimation.

EcoEvoRxiv

Climate-driven state shifts in the Prairie Pothole Region: Assessing future impacts relevant to the management of wetland habitats critical to waterfowl

Embedded within the North American Prairie Pothole Region (PPR) are millions of small, depressional wetlands that annually support 50–80% of the continent’s waterfowl production. We recently assembled evidence that demonstrates a change towards a wetter climate that is driving a shift in the state of the region’s wetland ecosystems. This ecological state-shift has been primarily the result of a sustained wet climate that has influenced timing and magnitude of surface-water inputs to wetlands, connections to groundwater, and inputs of dissolved salts. As climate influences continue to change in the PPR, it is important to understand the potential of these changes to impact wetland habitats important for waterfowl production. Previous model simulations of prairie-pothole wetlands under future climate scenarios projected decreases in the ability of wetlands to facilitate waterfowl production throughout the majority of what is currently the most productive portion of the region. Results from these modeling efforts also suggested that suitable waterfowl breeding-habitat would be limited mostly to the southeastern portion of the PPR, a portion of the region in which most depressional wetlands (> 90%) have been drained. Thus, if these modeled outcomes materialize, a significant restoration effort would be needed in the southeastern PPR to support waterfowl production. However, the models used in earlier efforts were developed from a small number of wetlands using data from a relatively dry period and did not allow for changing mechanisms influencing surface-water, groundwater and dissolved salt inputs to prairie-pothole wetlands. The primary objective of our research is to improve our understanding of future climate change on impacts to wetland ecosystems and breeding waterfowl habitat in the PPR. We used a newly developed Pothole Hydrology Linked Systems Simulator (PHyLiSS) model to estimate wetland ecosystem responses to 32 distinct climate models under 2 different emissions scenarios. Unlike previous wetland hydrology models, the PHyLiSS model allows for shifting hydrological and geochemical mechanisms influencing wetland ecosystems. We modeled one average-sized seasonal wetland basin at 18 different geographic locations (hereafter “sites”) across the PPR with 3 sites represented for each of 6 ecoregions coincident to early research. We applied the PHyLiSS model using historical daily precipitation and temperature data from 1982–2015 and developed linear models relative to ponded water depth in the simulated wetlands and the observed regional WBPHS May Pond count number for 16 of the 18 sites. Based on the output of 32 climate models and 2 emission scenarios we found a projected change in May pond numbers from -23% to +.02% when comparing the most recent climate period (1989–2018) to the end of the 21 st century (2070–2099). We also found no evidence that the distribution of May ponds will shift in the future. These results suggest that management and conservation strategies for wetlands in the PPR should continue to focus on areas where high densities of intact wetland basins support large numbers of breeding duck pairs.

Alberta, Iowa, Manitoba, Minnesota, Montana, North

Map showing general availability of ground water in the Kaiparowits coal-basin area, Utah

This is one of a series of maps that describe the geology and related natural resources in the Kaiparowits coal-basin area. This map is based partly on records of water wells, springs, and coal and petroleum exploration holes, partly on unpublished reports of field evaluations of prospective stock-water well sites by personnel of the U.S. Geological Survey, and partly on a 6-day field reconnaissance by the writer in parts of the mapped area. Most of the data used to compile this map were collected by the U.S. Geological Survey in cooperation with State, local, and other Federal agencies. Published sources of data included Phoenix (1963), Iorns, Hembree, and Phoenix (1964), Cooley (1965), Feltis (1966), Goode (1966, 1969), and the final environmental impact statement for the proposed Kaiparowits power project (U.S. Bureau of Land Management, 1976). Few data about the availability or depth of ground water could be obtained for large areas in the Kaiparowits coal basin. In those areas, expected yields of individual wells are inferred from the geology as compiled by Stokes (1964) and Hackman and Wyant (1973), and depths of ground water in wells are inferred largely from the local topography. El Paso Natural Gas Co., Resources Co., Kaiser Engineers, and Southern California Edison Co. provided specific information regarding the availability and depth of ground water in their exploratory holes on the Kaiparowits Plateau. The cooperation of those firms is gratefully acknowledged.

Utah

Initial Everglades Depth Estimation Network (EDEN) digital elevation model research and development

The Everglades Depth Estimation Network (EDEN) offers a consistent and documented dataset that can be used to guide large-scale field operations, to integrate hydrologic and ecological responses, and to support biological and ecological assessments that measure ecosystem responses to the Comprehensive Everglades Restoration Plan (Telis, 2006). To produce historic and near-real time maps of water depths, the EDEN requires a system-wide digital elevation model (DEM) of the ground surface. Accurate Everglades wetland ground surface elevation data were non-existent before the U.S. Geological Survey (USGS) undertook the collection of highly accurate surface elevations at the regional scale. These form the foundation for EDEN DEM development. This development process is iterative as additional high accuracy elevation data (HAED) are collected, water surfacing algorithms improve, and additional ground-based ancillary data become available. Models are tested using withheld HAED and independently measured water depth data, and by using DEM data in EDEN adaptive management applications. Here the collection of HAED is briefly described before the approach to DEM development and the current EDEN DEM are detailed. Finally future research directions for continued model development, testing, and refinement are provided.

Florida

Mute swans and their Chesapeake Bay habitats: proceedings of a symposium

The symposium 'Mute Swans and their Chesapeake Bay Habitats,' held on June 7, 2001, provided a forum for biologists and managers to share research findings and management ideas concerning the exotic and invasive mute swan (Cygnus olar). This species has been increasing in population size and is considered by many to be a problem in regard to natural food resources in the Bay that are used by native waterfowl during the winter months. Other persons, however, feel that resource managers are attempting to create a problem to justify more killing of waterfowl by hunters. Some persons also believe that managers should focus on the larger issues causing the decline of native food resources, such as the unabated human population increase in the Bay watershed and in the immediate coastal areas of the Bay. The symposium, sponsored by the Wildfowl Trust of North America and the U.S. Geological Survey, provided the atmosphere for presentation of mute swan data and opinions in a collegial setting where discussion was welcomed and was often informative and enthusiastic. An interesting historic review of the swan in regard to the history of mankind was presented, followed by a discussion on the positive and negative effects of invasive species. Biologists from different parts of the continent discussed the population status of the species in several states in the east and in the Great Lakes area. Data on the food habits of this species were presented in regard to submerged aquatic vegetation, and an interesting discussion on the role that the food habits of Canada geese in regard to native vegetation was presented. Findings and recommendations of the Mute Swan Task Force were presented. Finally, a representative of the Friends of Animals gave a thought-provoking presentation in defense of the mute swan. The presentations, in general, provided the necessary information and recommendations to allow managers to proceed with management of this controversial species with new and valuable perspectives.

Maryland, Virginia