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USGS2025

Using subducting plate motion to constrain Cascadia slab geometry and interface strength

Subduction zones are home to multiple geohazards driven by the evolution of the regional tectonics, including earthquakes, volcanic eruptions and landslides. Past evolution builds the present-day structure of the margin, while the present-day configuration of the system determines the state-of-stress in which individual hazardous events manifest. Regional simulations of subduction zones provide a tool to synthesize the tectonic history of a region and investigate how geologic features lead to variations in the state of stress across the subduction system. However, it is challenging to design regional models that provide a force-balance that is consistent with the large-scale motion of surrounding tectonic plates while also not over-constraining the solution. Here, we present new models for the Cascadia subduction zone that meet these criteria and demonstrate how the motion of the subducting Juan de Fuca plate can be used to determine the along-strike variations in the viscous (long-term) coupling across the plate boundary. All successful models require lower viscous coupling in the northern section of the trench compared to the central and southern sections. However, due to uncertainties in the geometry of the Cascadia slab, we find that there is a trade-off between along-strike variation in viscous coupling and slab shape. Better constraints on the slab shape, and/or use of other observations are needed to resolve this trade-off. The approach presented here provides a framework for further exploring how geologic features in the overriding plate and the properties of the plate boundary region affect the state-of-stress across this and other subduction zones.

Cascadia subduction zone↗

USGS2024

Mafic alkaline magmatism and rare earth element mineralization in the Mojave Desert, California: The Bobcat Hills connection to Mountain Pass

Occurrences of alkaline and carbonatite rocks with high concentrations of rare earth elements (REE) are a defining feature of Precambrian geology in the Mojave Desert of southeastern California. The most economically important occurrence is the carbonatite stock at Mountain Pass, which constitutes the largest REE deposit in the United States. A central scientific goal is to understand the genesis of the carbonatite ore body in the context of widespread REE-rich igneous activity. A swarm of mafic alkaline (shonkinite) dikes has been mapped and sampled at Bobcat Hills, 65 km southeast of the Mountain Pass mine. Whole-rock geochemistry and zircon geochronology demonstrate a clear affinity to the ca. 1.4 Ga Mountain Pass intrusive system. Bobcat Hills dikes have comparably high REE concentrations (La ∼1,000× chondritic) and an error-weighted mean 207 Pb/ 206 Pb zircon crystallization age of 1,426 ± 2 Ma (2 σ ). Unlike the alkaline intrusions at Mountain Pass, which have abundant inherited zircon from Paleoproterozoic basement rocks and crustally influenced oxygen isotope compositions (δ 18 O zircon = 6.5–7.5‰), the Bobcat Hills dikes lack any evidence of crustal assimilation and have oxygen isotope values that overlap a mantle range (Bobcat Hills average δ 18 O zircon = 5.6 ± 0.3‰). The dikes were a high-temperature, early center of mafic alkaline magmatism in the Mojave Desert that serve as a snapshot of melt generation from a spatially extensive, metasomatized mantle source. We propose that modification of the crust over many tens of Myr at Mountain Pass created an environment that favored crustal assimilation and enabled ascent of late-stage, REE-rich carbonatite magmas.

California↗

USGS2025

New paleomagnetic constraints on the eruption timing, stratigraphy, and post-emplacement deformation of the Picture Gorge Basalt within the Columbia River Basalt Group

The Picture Gorge Basalt (PGB) is part of the Miocene Columbia River Basalt Group (CRBG). The PGB, which outcrops in eastern Oregon, is considered coincident in time with the voluminous Grande Ronde Basalt. New radiometric ages have expanded the age‐range of the PGB, suggesting it began erupting prior to the Steens Basalt to its south and continued until after cessation of the Grande Ronde Basalt eruptions, an interval of 1.5 Ma. However, the existing paleomagnetism of the PGB implies this eruption timeline is an overestimate. To reconcile the radiometric and paleomagnetic timescales for the PGB, we conducted a paleomagnetic study on sections of the PGB to construct a detailed, high‐quality magnetostratigraphy. Our data indicate the stratigraphically lowest lava flows in the PGB are of reversed polarity, revealing a new paleomagnetic transition with the PGB and a reversed (R)–normal (N)–reversed (R) sequence. This suggests one of two timeline possibilities for PGB volcanism: (a) eruptions began and during through CRBG polarity chrons R0–N0–R1, penecontemporaneous with Steens Basalt, or (b) eruptions began and persisted during CRBG polarity chrons R1–N1–R2. Our work supports a longer interval of PGB volcanism than was suggested by previous paleomagnetic data but is at odds with the suggestion that PGB eruptions lasted through the entire main CRBG. We favor a scenario wherein PGB eruptions begin with R0 and continue into the R1 paleomagnetic interval. The paleomagnetic results also record a ∼18° vertical‐axis rotation of east‐central Oregon after ∼16 Ma with respect to stable North America.

Oregon↗

USGS2025

Identification of representative earthquakes for probabilistic tsunami hazard analysis (PTHA) using earthquake rupture forecasts and machine learning

As probabilistic tsunami hazard analysis (PTHA) focuses more on assessments for localized, populous regions, techniques are needed to identify a subsample of representative earthquake ruptures to make the computational requirements for producing high-resolution hazard maps tractable. Moreover, the greatest epistemic uncertainty in seismic PTHA is related to source characterization, which is often poorly defined and subjective. We address these two salient issues by applying streamlined earthquake rupture forecasts (ERFs), based on combinatorial optimization methods, to an unsupervised machine learning workflow for identifying representative ruptures. ERFs determine the optimal distribution of a millennia-scale sample of earthquakes by inverting the observed slip rate on major faults. We use two previously developed combinatorial optimization ERFs, integer programming and greedy sequential, to produce the optimal location of ruptures with seismic moments sampled from a regional Gutenberg–Richter magnitude–frequency distribution. These ruptures in turn are used to calculate peak nearshore tsunami amplitude, using computationally efficient tsunami Green's functions. An unsupervised machine learning workflow is then used to identify a small subsample of the earthquakes input to ERFs for onshore PTHA analysis. We eliminate epistemic uncertainty related to source distribution under traditional PTHA analysis; in its place, a quantifiable, less subjective and generally smaller uncertainty related to the input to ERFs is included. The Nankai subduction zone is used as a test case, where previous ERFs have been conducted. Results indicate that the locations of representative earthquakes are sensitive to choice of magnitude–area relation and to whether a minimum cumulative stress objective is imposed on the fault. In general, incorporating ERFs into PTHA provide a physically self-consistent method to incorporate fault slip information in determining representative earthquakes for onshore PTHA, eliminating a major source of epistemic uncertainty.

Nankai subduction zone↗

USGS2024

Radiogenic strontium- and uranium-isotope tracers of water-rock interactions and hydrothermal flow in the Upper Geyser Basin, Yellowstone Plateau Volcanic Field, USA

Natural radiogenic isotopes (primarily 87 Sr/ 86 Sr) from hot springs in the Upper Geyser Basin of the Yellowstone Plateau volcanic field and associated rocks were used to evaluate groundwater flow patterns, water-rock reactions, and the extent of mixing between various groundwater sources. Thermal waters have very low uranium concentrations and 234 U/ 238 U activity ratios near 1.0, which limit their utility as tracers in this reducing setting. Thermal waters have higher Sr concentrations (<22 ng/g) and a wide range of 87 Sr/ 86 Sr values that vary both temporally at individual discharge sites and between adjacent springs, indicating that conduits tap different subsurface reservoirs to varying degrees. Sr from local rhyolites have 87 Sr/ 86 Sr compositions that bound the range of values observed in groundwater throughout the basin. Non-boiling springs on the west flank of the basin discharge water with low 87 Sr/ 86 Sr consistent with flow through young volcanic rocks exposed at the surface. Boiling springs in the central basin have higher 87 Sr/ 86 Sr values reflecting interactions with older, more radiogenic volcanic rocks. Variability in upwelling thermal waters requires mixing with a low 87 Sr/ 86 Sr component derived from young lava or glacial sediments, or more likely, from deeper sources of hot groundwater circulating through buried Lava Creek Tuff having intermediate 87 Sr/ 86 Sr. Isotope data constrain basin-wide output of thermal water to 110–140 kg·s −1 . Results underscore the utility of radiogenic Sr isotopes as valuable tracers of hydrothermal flow patterns and improve the understanding of temperature-dependent water-rock reactions in one of the largest continental hydrothermal systems on Earth.

Wyoming↗

USGS2025

The systematics of stable hydrogen (δ2H) and oxygen (δ18O) isotopes and tritium (3H) in the hydrothermal system of the Yellowstone Plateau volcanic field, USA

To improve our understanding of hydrothermal activity on the Yellowstone Plateau volcanic field, we collected and analyzed a large data set of δ 2 H, δ 18 O, and the 3 H concentrations of circum-neutral and alkaline waters. We find that (a) hot springs are fed by recharge throughout the volcanic plateau, likely focused through fractured, permeable tuff units. Previous work had stressed the need for light δ 2 H water recharge restricted to the northern part of the plateau or recharge during past cold periods. However, new data from the Y-7 drill hole suggests that recharge is not restricted to a certain area or a cold period. (b) δ 18 O values of thermal waters in the geyser basins are shifted from the global meteoric water line by temperature-dependent water-rock reactions with higher subsurface temperatures resulting in a greater shift. (c) Large temporal variations in the isotopic composition of meteoric water recharge and small temporal variability in the isotopic composition of hot spring discharge implies that the volume of groundwater in, and around the Yellowstone caldera is substantially larger than the volume of annual water recharge. (d) Hot springs discharged through different rhyolitic units correlate with identifiable differences in δ 2 H and δ 18 O compositions, 3 H concentrations, and water chemistry that imply equilibration at different temperatures and travel along different flow paths. (e) Based on measured 3 H concentrations, we calculate that hot spring waters in the central part of the geyser basins mostly contain <2% post-1950 meteoric water, whereas waters discharged at the basin margins contain larger fractions of post-1950s meteoric water.

Wyoming↗

USGS2024

Developing, testing, and communicating earthquake forecasts: Current practices and future directions

While deterministically predicting the time and location of earthquakes remains impossible, earthquake forecasting models can provide estimates of the probabilities of earthquakes occurring within some region over time. To enable informed decision-making of civil protection, governmental agencies, or the public, Operational Earthquake Forecasting (OEF) systems aim to provide authoritative earthquake forecasts based on current earthquake activity in near-real time. Establishing OEF systems involves several nontrivial choices. This review captures the current state of OEF worldwide and analyzes expert recommendations on the development, testing, and communication of earthquake forecasts. An introductory summary of OEF-related research is followed by a description of OEF systems in Italy, New Zealand, and the United States. Combined, these two parts provide an informative and transparent snapshot of today's OEF landscape. In Section 4, we analyze the results of an expert elicitation that was conducted to seek guidance for the establishment of OEF systems. The elicitation identifies consensus and dissent on OEF issues among a non-representative group of 20 international earthquake forecasting experts. While the experts agree that communication products should be developed in collaboration with the forecast user groups, they disagree on whether forecasting models and testing methods should be user-dependent. No recommendations of strict model requirements could be elicited, but benchmark comparisons, prospective testing, reproducibility, and transparency are encouraged. Section 5 gives an outlook on the future of OEF. Besides covering recent research on earthquake forecasting model development and testing, upcoming OEF initiatives are described in the context of the expert elicitation findings.

Reviews of Geophysics↗

USGS2026

Rapid seismic and infrasound assessment of large landslides: A case study from Denali National Park and Preserve (Alaska)

Large, rapid landslides are a global hazard that can occur in remote, mountainous areas. Eyewitness reports of landslides and satellite imagery can often be limited or delayed, particularly during inclement weather. However, landslide-generated seismic and infrasound (low-frequency atmospheric sound) waves can be remotely detected in near real-time. This information can significantly expedite characterization and possible landslide response activities. Here, we highlight these capabilities using a > 4 million m³ ice–rock avalanche in Denali National Park and Preserve (Alaska). This event was detected via a landslide-specific seismic location and volume estimation algorithm deployed in Alaska, and — notably — by standard earthquake monitoring systems. Following rapid detection of this event, we combined its seismic and infrasound dataset with optical, synthetic aperture radar, and oblique aerial imagery, multitemporal digital elevation models, and a numerical flow model to reconstruct its failure timeline and dynamics. We apply array processing to infrasound signals traveling > 250 km and find that two precursory events occurred minutes prior to the main failure. We use long-period seismic signals to infer the force exerted by the landslide on the Earth and constrain the rheological parameters of our numerical flow simulation with this result and deposit morphology. The main failure produced a steeply-dipping impulsive initial downward force and reached speeds exceeding 60 m/s. This impulsive force generated relatively strong seismic body waves, which contributed to the earthquake system detection. This large, remote Alaska landslide underscores the key value of seismic and infrasound analysis for rapid landslide assessment and motivates efforts to further operationalize these approaches.

Alaska↗

USGS2025

Refinements to the attenuated propagation of local earthquake shaking (APPLES) ground-motion-based earthquake early warning algorithm

We refined the Attenuated ProPagation of Local Earthquake Shaking (APPLES) ground-motion-based earthquake early warning (EEW) approach, and directly compare APPLES performance with that of the source-characterization-based U.S. ShakeAlert EEW system for a suite of historical earthquakes in the U.S. West Coast and Japan. APPLES is an extension of the Propagation of Local Undamped Motion (PLUM) algorithm in which observed shaking intensity at seismic stations is used to forward-predict intensity distributions to surrounding areas using an attenuation model derived from an intensity prediction equation. We test new configuration options within APPLES, such as using the second highest estimated ground motion rather than the maximum, to better match median ground-motion observations and reduce alerts for small magnitude earthquakes, both of which are key alerting priorities within ShakeAlert. We evaluate these configurations alongside ShakeAlert by comparing the ground-motion estimation accuracy and available warning times relative to station observations and ShakeMap distributions. Our preferred APPLES configuration produces accurate ground-motion estimates and corresponds better with median observations compared to ShakeAlert’s estimates. This preferred configuration substantially reduces alert issuance for M < 5.0 earthquakes compared to the previous APPLES configuration, and alert-release criteria can further restrict alerts to primarily M ≥ 5.5 earthquakes without requiring magnitude estimation. Prioritizing matching median-observed ground motions may reduce APPLES warning times compared to configurations that were tuned to avoid missed alerts (such as those that use the maximum estimated ground motions), which can lead to shorter warning times compared to ShakeAlert for the same alert threshold. However, station-based warning time assessments demonstrate that APPLES can outperform ShakeAlert for high target thresholds. APPLES is a simple, independent EEW approach that may improve the robustness of EEW for the West Coast of the U.S.

California, Oregon, Washington↗

USGS2018

Divisions of geologic time—Major chronostratigraphic and geochronologic units

Introduction Effective communication in the geosciences requires a consistent nomenclature for stratigraphic units and, especially, for divisions of geologic time. A geologic time scale is composed of standard stratigraphic divisions based on rock sequences and is calibrated in years. Geologists from the U.S. Geological Survey (USGS), State geological surveys, academia, and other organizations require a consistent time scale to be used in communicating ages of geologic units in the United States. Many international debates have occurred over names and boundaries of units, and various time scales have been used by the geoscience community. For consistent usage of time terms, the USGS Geologic Names Committee and the Association of American State Geologists developed the Divisions of Geologic Time ; the 2018 update in this fact sheet contains the unit names and boundary age estimates ratified by the International Commission on Stratigraphy in 2018. Scientists may use other published time scales, provided that these are specified and referenced.

Fact Sheet↗

USGS2024

Recent applications of the USGS National Crustal Model for Seismic Hazard Studies

The U.S. Geological Survey is developing the National Crustal Model (NCM) for seismic hazard studies to facilitate modeling site, path, and source components of seismic hazard across the conterminous United States. The NCM is composed of a 1km grid of geophysical profiles, extending from the Earth’s surface into the upper mantle. It is constructed from a threedimensional (3D) geologic framework and geophysical rules that use (1) a petrologic and mineral physics database; (2) a 3D temperature model; and (3) a calibrated rock type- and age-dependent porosity model. Parameters needed to estimate site response for existing ground motion models (GMMs), including the time-averaged velocity in the upper 30 meters (VS30), the depths to 1.0 and 2.5 km/s shear-wave velocity (Z1.0 and Z2.5), and sediment thickness, can be computed from the NCM. As GMMs continue to improve in the future, other metrics could also be extracted or derived from the NCM, such as fundamental period, site attenuation (ko), a fully frequency-dependent site response function, or 3D geophysical volumes for wavefield simulations. Application of the NCM may also benefit other aspects of seismic hazard analysis, including better accounting for path-dependent attenuation and geometric spreading, more accurate estimation of earthquake source properties such as hypocentral location and stress drop, and calculation of crustal strength profiles that inform estimates of the base of seismicity.

conterminous United States↗

USGS2025

Stories in stone: The geoheritage significance of U.S. National Park Service stratotypes

The U.S. National Park Service stratotype inventory has systematically documented hundreds of published stratotypes across the country that represent a quintessential component of America’s geoheritage and possess significant scientific, educational, cultural, historic, and aesthetic values. As valuable geologic reference standards, stratotypes record intervals of Earth history relating to our nation’s unique geologic evolution, biological progression, cultural traditions, historical narratives, and stunning landforms. However, the general lack of awareness and knowledge regarding the scope, significance, distribution, and scale of stratotypes can result in these resources being overlooked. Consequently, stratotypes may inadvertently experience accidental alteration, damage, or destruction through both natural and anthropogenic processes. As with many American geoheritage sites, stratotypes lack specific recognition through legislation, policies, or other management strategies to ensure their preservation and protection. Through education and outreach, we hope to inform, increase awareness, and engage the public about these internationally and nationally significant geologic reference sites, unite various geoheritage communities, and promote their preservation for future generations.

Geoheritage↗

USGS2025

Preliminary depth to basement modeling at Salton Sea, California

The San Andreas Fault – Imperial Fault (SAF-IF) transtensional step-over zone along the southern margin of the Salton Sea hosts substantial geothermal production and lithium brine resources. Recent volcanism at the Salton Buttes and active seismicity along the SAFIF fault system highlight active tectonic and magmatic processes that pose natural hazards and may impact energy and mineral production. Characterizing the subsurface architecture and extent of concealed alteration associated with this tectono-magmatic system enhances understanding of these active processes, associated hazards, and resources. We have compiled a gravity database, consisting of new and re-processed existing data, from which we have constructed a new isostatic residual gravity anomaly map of the Salton trough. We have used this new gravity dataset together with a compilation of publicly available borehole data to develop new depth to basement inversion models for the region. These depth to basement models help to constrain basin geometries, inform alteration mapping, and reveal variations in basement rocks. Due to the concealed nature of the complex tectonic framework at the Salton trough, it is necessary to utilize geophysical methods for subsurface characterization. These new depth to basement models are a first step toward constructing 2D and 3D geophysical and geologic models of the Imperial Valley and Salton Sea geothermal area. This analysis complements other geophysical initiatives, including magnetotelluric (MT) modeling (Tokmakoff et al., 2024), magnetic mapping (Glen and Earney, 2023, 2024) and potential field modeling, and seismic studies focused on hazard and resource investigations in the Imperial Valley.

California↗

USGS2026

Assessing the state of hydrologic science in the Upper Klamath Basin—A comprehensive review of data, tools, and models

Water demand in the Upper Klamath Basin (UKB) from various stakeholders and ecological needs often outstrips available supply, leading to persistent management challenges. This study reviews the state of hydrologic science within the UKB as of 2025—specifically, the tools, data, and models available for assessing five key components of the water system: (1) surface water; (2) precipitation; (3) evapotranspiration; (4) groundwater; and (5) water use. The UKB water supply is critical for Native American communities, regional agriculture, and federally listed fishes and faces challenges from competing needs, climate variability, and operational/regulatory requirements. We assess existing datasets, regional and national models, and historical studies to understand the available resources and identify gaps that may hinder integrated water assessments and management. Our findings indicate areas where improvements in data collection and model precision could improve the accuracy of water-availability forecasts and support water-management practices. This review can inform near-term forecasting, assist in optimizing water-resource data collection and management strategies, and support regional water-availability assessments of the basin.

Oregon↗

USGS2026

Use of precariously balanced rocks to constrain postglacial earthquake magnitudes in New England, United States

We use the age and fragility of 13 precariously balanced rocks (PBRs) in Massachusetts, New Hampshire, and southwestern Maine to evaluate the estimated probabilistic seismic hazard (PSH) from the U.S. Geological Survey’s National Seismic Hazard Model (NSHM), and also develop a map of maximum postglacial earthquake magnitudes in the region. The PBRs are erratic boulders left behind by the retreat of the Laurentide ice sheet between 13 and 18 ka, and published ice retreat maps are used to estimate their fragility ages. The fragilities and ages of the rocks appear to be consistent with the NSHM, in that the estimated earthquake magnitudes and resulting ground motions that would topple them are only expected on timescales longer than their fragility ages. This result, on the North American passive margin, contrasts with PBR studies at active plate boundaries, where the PBR constraints imply large reductions to estimated PSH. It may be that the PBRs are not old enough in the eastern United States to reveal the same PSH modeling issues as those revealed in the plate boundary settings. The study provides constraints on maximum magnitudes of postglacial earthquakes across much of Massachusetts, New Hampshire, and southwestern Maine, with the constraints limited to the ages of the PBRs.

Maine. Massachusetts, New Hampshire↗

USGS2026

Hydrogeology, groundwater salinity distributions, and assessment of the effect of oil-production activities on groundwater in the Midway Valley area, western Kern County, San Joaquin Valley, California

This study seeks to determine the effects of oil field produced water disposal operations and well mechanical integrity issues on groundwater quality in oil fields in the southwest San Joaquin Valley, California. Whereas previous studies used groundwater wells to study shallow aquifers outside the oil fields, this study demonstrates that future approaches may use oil well geophysical logs to map groundwater head gradients, create salinity profiles and document changes in salinity over time in oil field areas with sparse groundwater well data and at depths greater than 330 m. We also incorporate an analysis of well histories to determine potential effects of compromised wellbore seals on changes in aquifer quality that cannot be explained by water disposal practices. Water quality in the aquifers is naturally brackish across most of the area, with better quality groundwater occurring in the eastern part. Geophysical logs are used to determine salinity variations within aquifers including the depth at which TDS exceeds 10,000 mg/L. This depth ranges from 366 m in the northwest to approximately 1,500 m in the southeast. Oil well porosity logs are used to determine water table elevations. These logs indicate the water table slopes south-southeast, showing the predominant groundwater flow direction is from oil field disposal areas toward better quality groundwater east of the oil fields. Geophysical logs show formation resistivity near some disposal facilities has decreased over time, indicating the salinity of the aquifer has increased due to disposal of saline produced water in injection wells and ponds. Oil well history analysis suggests that increased salinity over time in water-saturated sand intervals >1.5 km from disposal facilities may be caused by mechanical failures and/or incomplete borehole seals in poorly constructed or abandoned wellbores prevalent throughout the study area—particularly wells drilled prior to 1930.

California↗

USGS2024

Neotectonic mapping of Puerto Rico

Puerto Rico is part of the Puerto Rico-Virgin Islands microplate, along the Caribbean–North American plate boundary between the Puerto Rico trench subduction zone and the Muertos Trough incipient subduction zone. Despite recent seismicity and geodetically constrained deformation of ~3 mm/yr of left-lateral shear across the island, Quaternary fault locations remain largely uncertain. Preservation of recent faulting in the landscape is masked by distributed faulting, high weathering rates of the tropical climate, steep topography, frequent landsliding, and extensive agriculture and urbanization along coastlines and river valleys. We present remote neotectonic mapping of historical aerial imagery from the 1930s-60s and <1-m lidar topography, integrated with field observations, to create an updated active fault map of Puerto Rico. We focus on faults that offset younger geomorphic surfaces, with ages estimated by geologic mapping, OSL and radiocarbon dating, and morphologic interpretations. We present new evidence for Quaternary activity on seven faults, including the South Lajas, Salinas, Punta Montalva, Great Southern Puerto Rico, Cerro Goden, Parguera, and San Marcos faults. We find that active faulting occurs preferentially along the southern and western coasts and does not always spatially coincide with preexisting bedrock faults, possibly reflecting partial reactivation of older faults in the modern strain field.

Puerto Rico↗

USGS2026

Cotton farming pesticides affect ileal microbiota activity expressions of virulome but not resistome or metabolic pathways in a sedentary wild passerine

The increased use of agrochemicals to enhance crop production has had detrimental environmental effects including implication in the sharp decline of North American farmland-breeding birds. Here, using a combination of deep shotgun metatranscriptomics and pesticide exposure data, we sought to assess whether exposure to cotton ( Gossypium spp.) production had a differential effect on ileum multi-kingdom microbial activity, metabolism, anti-microbial resistance, and virulence factors of sedentary northern mockingbirds ( Mimus polyglottos ) sampled from two cotton-producing areas (16 birds in total) and one uncultivated area (7 birds) in Texas, USA. Both Shannon Index values (Adj. r 2 = 0.174, F (1,21) = 5.633, p = 0.027) and a Mantel test (Spearman ρ = 0.184, p = 0.013) supported a relationship between metabolically active microbiota Bray–Curtis dissimilarities and differences in pesticide mixtures among study areas. Virulence factor richness (Adj. r 2 = 0.182, F (1,21) = 5.890, p = 0.024), Shannon Index (Adj. r 2 = 0.231, F (1,21) = 7.612, p = 0.012), and load (sum of virulence factor abundances; Adj. r 2 = 0.160, F (1,21) = 5.194, p = 0.033) were related to total pesticide load (total quantity of pesticides). We found no pesticide effects on expression of either antimicrobial resistance genes or metabolic pathways.

Texas↗