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Animal reservoirs and hosts for emerging alphacoronaviruses and betacoronaviruses

The ongoing global pandemic caused by coronavirus disease has once again demonstrated the role of the family Coronaviridae in causing human disease outbreaks. Because severe acute respiratory syndrome coronavirus 2 was first detected in December 2019, information on its tropism, host range, and clinical manifestations in animals is limited. Given the limited information, data from other coronaviruses might be useful for informing scientific inquiry, risk assessment, and decision-making. We reviewed endemic and emerging infections of alphacoronaviruses and betacoronaviruses in wildlife, livestock, and companion animals and provide information on the receptor use, known hosts, and clinical signs associated with each host for 15 coronaviruses detected in humans and animals. This information can be used to guide implementation of a One Health approach that involves human health, animal health, environmental, and other relevant partners in developing strategies for preparedness, response, and control to current and future coronavirus disease threats.

Emerging Infectious Diseases

Managing National Wildlife Refuges for historic or non-historic conditions: Determining the role of the refuge in the ecosystem

The 1997 Refuge Improvement Act mandates that National Wildlife Refuges (NWR) develop Comprehensive Conservation Plans and that the Refuge System be administered in a manner that ensures the biological integrity, diversity, and environmental health of the System are maintained. Refuges must determine their role in the landscape and decide if refuge lands will be managed for historic or non-historic conditions. This decision should be based on an understanding of the Refuge Purpose and supported by available science. Case studies for Sherburne NWR and Bosque del Apache NWR illustrate two possible approaches to determining future management.

Natural Resources Journal

Silver Hazards to Fish, Wildlife, and Invertebrates: A Synoptic Review

Ecological and toxicological aspects of silver (Ag) in the environment are briefly summarized with an emphasis on natural resources. Elevated silver concentrations in biota occur in the vicinities of sewage outfalls, electroplating plants, mine waste sites, and silver-iodide seeded areas; in the United States, the photography industry is the major source of anthropogenic silver discharges into the biosphere. Silver and its compounds are not known to be mutagenic, teratogenic, or carcinogenic. Under normal routes of exposure, silver does not pose serious environmental health problems to humans at less than 50.0 ug total Ag/L drinking water or 10.0 ug per cubic meter air. Free silver ion, however, was lethal to representative species of sensitive aquatic plants, invertebrates, and teleosts at nominal water concentrations of 1.2 to 4.9 ug/L; sublethal effects were significant between 0.17 and 0.6 ug/L. Silver was harmful to poultry at concentrations as low as 1.8 mg total Ag/kg whole egg fresh weight by way of injection, 100.0 mg total Ag/L in drinking water, or 200.0 mg total Ag/kg in diets; sensitive mammals were adversely affected at total silver concentrations as low as 250.0 ug/L in drinking water, 6.0 mg/kg in diets, or 13.9 mg/kg whole body.

Contaminant Hazard Reviews

A new database on contaminant exposure and effects in terrestrial vertebrates for natural resource managers

The Biomonitoring of Environmental Status and Trends (BEST) program of the Department of the Interior is focused to identify and understand effects of contaminant stressors on biological resources under their stewardship. Despite the desire of many to continuously monitor the environmental health of our estuaries, much can be learned by summarizing existing temporal, geographic, and phylogenetic contaminant information. To this end, retrospective contaminant exposure and effects data for amphibians, reptiles, birds, and mammals residing within 30 km of Atlantic coast estuaries are being assembled through searches of published literature (e.g., Fisheries Review, Wildlife Review, BIOSIS Previews) and databases (e.g., US EPA Ecological Incident Information System; USGS Diagnostic and Epizootic Databases), and compilation of summary data from unpublished reports of government natural resource agencies, private conservation groups, and universities. These contaminant exposure and effect data for terrestrial vertebrates (CEE-TV) are being summarized using Borland dBASE in a 96- field format, including species, collection time and site coordinates, sample matrix, contaminant concentration, biomarker and bioindicator responses, and source of information (N>1500 records). This CEE-TV database has been imported into the ARC/INFO geographic information system (GIS), for purposes of examining geographic coverage and trends, and to identify critical data gaps. A preliminary risk assessment will be conducted to identify and characterize contaminants and other stressors potentially affecting terrestrial vertebrates that reside, migrate through or reproduce in these estuaries. Evaluations are underway, using specific measurement and assessment endpoints, to rank and prioritize estuarine ecosystems in which terrestrial vertebrates are potentially at risk for purposes of prediction and focusing future biomonitoring efforts.

Book chapter

Saving our shared birds: Partners in Flight tri-national vision for landbird conservation

Landbirds are the most abundant and diverse group of birds in North America, with nearly 900 species distributed across every major terrestrial habitat. Birds are indicators of environmental health; their populations track changes in habitat, water, disease, and climate. They are providers of invaluable ecosystem services, such as pest control, seed dispersal, and pollination. As the focus of bird watching, they help generate billions of dollars for national economies. Yet, we are in danger of losing this spectacular and irreplaceable bird diversity: landbirds are experiencing significant declines, ominous threats, and shrinking habitats across a continent with growing human populations, increasing resource consumption, and changing climate. Saving Our Shared Birds presents for the first time a comprehensive conservation assessment of landbirds in Canada, Mexico, and the continental United States. This new tri-national vision encompasses the complete range of many migratory species and highlights the vital links among migrants and highly threatened resident species in Mexico. It points to a set of continent-scale actions necessary to maintain the landbird diversity and abundance that are our shared responsibility. This collaborative effort of Partners in Flight (PIF) is the next step in linking the countries of the Western Hemisphere to help species at risk and keep common birds common through voluntary partnerships—our mission since 1990. Saving Our Shared Birds builds upon PIF’s 2004 North American Landbird Conservation Plan, which presented science-based priorities for the conservation of 448 landbird species in Canada and the United States. Our three nations have expressed their commitment to cooperative conservation through numerous international treaties, agreements, and programs, including formation of the North American Bird Conservation Initiative (NABCI) a decade ago. The NABCI partnership recognizes that effective conservation requires a concerted effort within each country, as well as a tri-national strategy to address issues throughout the full life cycles of our birds. Today more than ever, it is urgent for the people of Canada, Mexico, and the United States to work together to keep common birds common, prevent extinction of our bird species at greatest risk, and ensure the diversity and abundance of birdlife across North America and throughout the hemisphere, far into the future. Saving Our Shared Birds shows the way forward.

Report

Streamflow data

The importance of streamflow data to the world’s economy, environmental health, and public safety continues to grow as the population increases. The collection of streamflow data is often an involved and complicated process. The quality of streamflow data hinges on such things as site selection, instrumentation selection, streamgage maintenance and quality assurance, proper discharge measurement techniques, and the development and continued verification of the streamflow rating. This chapter serves only as an overview of the streamflow data collection process as proper treatment of considerations, techniques, and quality assurance cannot be addressed adequately in the space limitations of this chapter. Readers with the need for the detailed information on the streamflow data collection process are referred to the many references noted in this chapter.

Book chapter

Handbook of groundwater remediation using permeable reactive barriers: Applications to radionuclides, trace metals, and nutrients

Over the last century and a half, groundwaters have become contaminated by a growing number of organic and inorganic substances ranging from petroleum-derived hydrocarbons to radioactive compounds, to cancer-causing hexavalent chromium. The importance of uncontaminated groundwater for agriculture, human consumption, and the environmental health of ecosystems is paramount to the health and productivity of industrial society. Water scientists and managers are focused on developing cost-effective methods to reverse this trend. Several methodologies have been developed, however few are as cost-effective as the use of readily available materials, such as iron and organic compost, for absorbing and isolating contaminants within the matrix of a permeable barrier. The Handbook of Groundwater Remediation using Permeable Reactive Barriers presents readers with this latest technology and developments within four main sections: 1. Innovations in Design, Construction, and Evaluation of PRBs 2. Development of Reactive Materials 3. Evaluations of Chemical and Biological Processes 4. Case Studies of Permeable Reactive Barrier Installations The Handbook is one of the first references specifically on this topic. It is an excellent fit for graduate students entering this emerging field as well as professionals conducting research or implementing this technology.

Book

A climate risk management screening and assessment review for Madagascar’s Country Development Cooperation Strategy

Madagascar, a country rich in natural capital and biodiversity but with high levels of poverty, food insecurity, and population growth, faces a number of development challenges, including obtaining sustained financial support from external sources and building internal capacity to address the poor environmental, health, and socio-economic conditions. Climate change poses an increasing threat to achieving development goals and is usually considered in development plans and project designs. However, there have been numerous challenges in the effective implementation of those plans, particularly in the sustained engagement of the communities to undertake adaptive actions but also due to insufficient scientific information to inform management decisions. To support the United States Agency for International Development (USAID) in the incorporation of Climate Risk Management into their Country Development Cooperation Strategy, we synthesized the best available information on current and future climate change impacts. Climate risks in Madagascar include increasing temperatures, reduced and more variable precipitation, more frequent droughts, more intense cyclones, and rising sea levels. We synthesized the observed and projected impacts of these climatic changes on water resources, agriculture, coastal and terrestrial ecosystems and ecosystem services, fisheries, and human health. Through interviews with stakeholders in Madagascar, we also discerned ongoing and potential climate adaptation and mitigation activities and information gaps (production, access, exploitation, processing, dissemination of information). The information gathered can be used by USAID, NGOs, and other organizations on how to better incorporate climate risks into development strategies and projects in Madagascar.

Project Summary

Amphibians

Amphibians are ecologically important in most freshwater and terrestrial habitats in the United States: they can be numerous, function as both predators and prey, and constitute great biomass. Amphibians have certain physiological (e.g., permeable skin) and ecological (e.g., complex life cycle) traits that could justify their use as bioindicators of environmental health. For example, local declines in adult amphibians may indicate losses of nearby wetlands. The aquatic breeding habits of many terrestrial species result in direct exposure of egg, larval, and adult stages to toxic pesticides, herbicides, acidification, and other human-induced stresses in both aquatic and terrestrial habitats. Reported declines of amphibian populations globally have drawn considerable attention (Bury et al. 1980; Bishop and Petit 1992; Richards et al. 1993; Blaustein 1994; Pechmann and Wilbur 1994). Approximately 230 species of amphibians, including about 140 salamanders and 90 anurans (frogs and toads) occur in the continental United States. Because of their functional importance in most ecosystems, declines of amphibians are of considerable conservation interest. If these declines are real, the number of listed or candidate species at federal, state, and local levels could increase significantly. Unfortunately, because much of the existing information on status and trends of amphibians is anecdotal, coordinated monitoring programs are greatly needed.

Book chapter

An overview of mining-related environmental and human health issues, Marinduque Island, Philippines: observations from a joint U.S. Geological Survey - Armed Forces Institute of Pathology reconnaissance field evaluation, May 12-19, 2000

This report summarizes results of a visit by the report authors to Marinduque Island, Philippines, in May 2000. The purpose of the visit was to conduct a preliminary examination of environmental problems created by a 1996 tailings spill from the Marcopper open-pit copper mine. The mine was operated from 1969-1996 by Macropper Mining Corperation, under 39.9% ownership, and design and management control of Placer Dome, Inc. Our trip expenses to and from the Philippines were funded by the USGS. In-country expenses were paid by the offices of Congressman Reyes and the Governor of Marinduque, Carmencita O. Reyes. This report includes observations we made based on our relatively short visit to the island, and observations based upon a preliminary review of the literature available on the islanda??s mining-environmental issues. In addition, we have included preliminary interpretations and analytical results of some water, sediment, and mine waste samples collected during our trip. We also highlight the environmental and human health issues we fell are in need of further study and consideration for mitigation or remediation. This report is preliminary and is not intended to be a comprehensive or final review of the islanda??s mining-environmental issues; many areas of further study are clearly neededa?|

Open-File Report

Atmospheric particulate matter in proximity to mountaintop coal mines: Sources and potential environmental and human health impacts

Mountaintop removal mining (MTM) is a widely used approach to surface coal mining in the US Appalachian region whereby large volumes of coal overburden are excavated using explosives, removed, and transferred to nearby drainages below MTM operations. To investigate the air quality impact of MTM, the geochemical characteristics of atmospheric particulate matter (PM) from five surface mining sites in south central West Virginia, USA, and five in-state study control sites having only underground coal mining or no coal mining whatsoever were determined and compared. Epidemiologic studies show increased rates of cancer, respiratory disease, cardiovascular disease, and overall mortality in Appalachian surface mining areas compared to Appalachian non-mining areas. In the present study, 24-h coarse (>2.5 µm) and fine (≤2.5 µm) PM samples were collected from two surface mining sites in June 2011 showed pronounced enrichment in elements having a crustal affinity (Ga, Al, Ge, Rb, La, Ce) contributed by local sources, relative to controls. Follow-up sampling in August 2011 lacked this enrichment, suggesting that PM input from local sources is intermittent. Using passive samplers, dry deposition total PM elemental fluxes calculated for three surface mining sites over multi-day intervals between May and August 2012 were 5.8 ± 1.5 times higher for crustal elements than at controls. Scanning microscopy of 2,249 particles showed that primary aluminosilicate PM was prevalent at surface mining sites compared to secondary PM at controls. Additional testing is needed to establish any link between input of lithogenic PM and disease rates in the study area.

West Virginia

You're standing on it! Coal-tar-based pavement sealcoat and environmental and human health

Coal-tar-based sealcoat—a product marketed to protect and beautify asphalt pavement—is a potent source of polycyclic aromatic hydrocarbons (PAHs) to air, soils, streams and lakes, and homes. Does its use present a risk to human health? Results from a new study by researchers from Baylor University and the USGS indicate that living adjacent to a coal-tar-sealed pavement is associated with significant increases in estimated excess lifetime cancer risk, and that much of the increased risk occurs during early childhood.

APWA Reporter

New approaches to wildlife health

Recent environmental change and biodiversity loss have modified ecosystems, altering disease dynamics. For wildlife health, this trend has translated into increased potential for disease transmission and reduced capacity to overcome significant population-level impacts, which may place species at risk of extinction. Thus, current approaches to wildlife health focus not on the absence of disease but rather on the concept of health promotion. That is, wildlife populations will be more resilient to disease if they have the basic requirements for survival, as well as functioning ecosystems, within an enabling socio-economic environment. In this context, animal health programmes must adapt to design and implement wildlife health programmes that bridge knowledge gaps and fully integrate conservation goals. This article proposes new pathways and additions to the animal health management toolbox, including new approaches to surveillance and information management, partnerships and new wildlife health management practices. Solely because of risks to domesticated animals and human health, the traditional approach to disease surveillance in wild animals has now been replaced by a drive to recognise the intrinsic value of wildlife and the extended benefits of actively pursuing ecosystem health and associated life-sustaining ecosystem services. In this context, it is paramount to transition to holistic health programmes that embrace One Health as a pathway to set the health of all on equal footing.

Scientific and Technical Review

Clinical methods for the assessment of the effects of environmental stress on fish health

Clinical methods are presented for biological monitoring of hatchery and native fish populations to assess the effects of environmental stress on fish health. The choice of methods is based on the experience of the authors and the judgment of colleagues at fishery laboratories of the U.S. Fish and Wildlife Service. Detailed analysis methods, together with guidelines for sample collection and for the interpretation of results, are given for tests on blood (cell counts, chloride, cholesterol, clotting time, cortisol, glucose, hematocrit, hemoglobin, lactic acid, methemoglobin, osmolality, and total protein); water (ammonia and nitrite content); and liver and muscle (glycogen content).

Technical Paper

Impacts of waste from concentrated animal feeding operations on water quality

Waste from agricultural livestock operations has been a long-standing concern with respect to contamination of water resources, particularly in terms of nutrient pollution. However, the recent growth of concentrated animal feeding operations (CAFOs) presents a greater risk to water quality because of both the increased volume of waste and to contaminants that may be present (e.g., antibiotics and other veterinary drugs) that may have both environmental and public health importance. Based on available data, generally accepted livestock waste management practices do not adequately or effectively protect water resources from contamination with excessive nutrients, microbial pathogens, and pharmaceuticals present in the waste. Impacts on surface water sources and wildlife have been documented in many agricultural areas in the United States. Potential impacts on human and environmental health from long-term inadvertent exposure to water contaminated with pharmaceuticals and other compounds are a growing public concern. This workgroup, which is part of the Conference on Environmental Health Impacts of Concentrated Animal Feeding Operations: Anticipating Hazards-Searching for Solutions, identified needs for rigorous ecosystem monitoring in the vicinity of CAFOs and for improved characterization of major toxicants affecting the environment and human health. Last, there is a need to promote and enforce best practices to minimize inputs of nutrients and toxicants from CAFOs into freshwater and marine ecosystems.

Environmental Health Perspectives

Human and bovine viruses and bacteria at three Great Lakes beaches: Environmental variable associations and health risk

Waterborne pathogens were measured at three beaches in Lake Michigan, environmental factors for predicting pathogen concentrations were identified, and the risk of swimmer infection and illness was estimated. Waterborne pathogens were detected in 96% of samples collected at three Lake Michigan beaches in summer, 2010. Samples were quantified for 22 pathogens in four microbial categories (human viruses, bovine viruses, protozoa, and pathogenic bacteria). All beaches had detections of human and bovine viruses and pathogenic bacteria indicating influence of multiple contamination sources at these beaches. Occurrence ranged from 40 to 87% for human viruses, 65–87% for pathogenic bacteria, and 13–35% for bovine viruses. Enterovirus, adenovirus A, Salmonella spp. , Campylobacter jejuni , bovine polyomavirus, and bovine rotavirus A were present most frequently. Variables selected in multiple regression models used to explore environmental factors that influence pathogens included wave direction, cloud cover, currents, and water temperature. Quantitative Microbial Risk Assessment was done for C. jejuni , Salmonella spp. , and enteroviruses to estimate risk of infection and illness. Median infection risks for one-time swimming events were approximately 3 × 10 –5 , 7 × 10 –9 , and 3 × 10 –7 for C. jejuni , Salmonella spp., and enteroviruses, respectively. Results highlight the importance of investigating multiple pathogens within multiple categories to avoid underestimating the prevalence and risk of waterborne pathogens.

Wisconsin

Health effects of energy resources

Energy resources (coal, oil, and natural gas) are among the cornerstones of modern industrial society. The exploitation of these resources, however, is not without costs. Energy materials may contain harmful chemical substances that, if mobilized into air, water, or soil, can adversely impact human health and environmental quality. In order to address the issue of human exposure to toxic substances derived from energy resources, the U.S. Geological Survey (USGS) Energy Resources Program developed a project entitled 'Impacts of Energy Resources on Human Health and Environmental Quality.' The project is intended to provide policymakers and the public with the scientific information needed to weigh the human health and environmental consequences of meeting our energy needs. This fact sheet discusses several areas where the USGS Energy Resources Program is making scientific advances in this endeavor.

Fact Sheet