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EAARL Topography-Padre Island National Seashore

This Web site contains 116 Lidar-derived bare earth topography maps and GIS files for Padre Island National Seashore-Texas. These Lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Florida Integrated Science Center (FISC) St. Petersburg, Florida, the National Park Service (NPS) Gulf Coast Network, Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to costal resource managers.

Texas

Lesser scaup winter foraging and nutrient reserve acquisition in east-central Florida

Lesser scaup (Aythya affinis) populations have been declining since the late 1970s. One of the explanations to account for this decline, the spring-condition hypothesis (SCH), is based on the premise that scaup are limited by their ability to acquire or maintain nutrient reserves during migration to the breeding grounds, leading to an impairment of their reproductive potential. Available evidence suggests that endogenous reserves required for reproduction are obtained at a later stage of migration or after arrival at the breeding grounds, not wintering sites. However, only one study has addressed body-condition levels on a southern wintering site in the last decade, with results limited to the wintering grounds on the Mississippi Flyway. We documented foraging behavior, nutrient levels, and body mass of lesser scaup in east-central Florida, USA, where 62% of the Atlantic Flyway population overwinters, during the winters of 2002 and 2003. Diurnal foraging did not increase seasonally. Nocturnal foraging increased seasonally by 76% or 43 minutes per night in females and by 478% or 1.9 hours per night in males. Measures of body condition did not change seasonally during 2002 for either sex. Between early and later winter in 2003 corrected body mass (CBM) and lipid reserves of male scaup increased 77 g and 39 g, respectively. Our results suggest that lesser scaup maintain or may slightly improve their physiological condition in east-central Florida during winter. Lower body mass and differences in nutrient levels in east-central Florida, compared to a wintering site in Louisiana, likely stem from geographic variation and lower thermal requirements associated with the warmer Florida environment. Lesser scaup depart Florida with sufficient reserves to initiate spring migration, but they maximize nutrient reserves used during reproduction elsewhere during migration or on the breeding grounds. These results suggest that maintaining the ecological integrity of this wintering ground is critical in minimizing winter mortality and preventing it from becoming an ancillary factor in current declines. Future research should address understanding survival rates during spring migration and at critical staging areas to provide new insight into the ramifications of scaup leaving wintering habitats such as MINWR with lower body condition than at other wintering sites in other flyways.

Journal of Wildlife Management

Prairie basin wetlands of the Dakotas: a community profile

This description of prairie basin wetlands of the Dakotas is part of a series of community profiles on ecologically important wetlands of national significance. The shallow wetlands of the Dakotas form the bulk of the portion of the Prairie Pothole Region lying within the United States. This region is famous as the producer of at least half of North America's waterfowl and an unknown, but large, proportion of other prairie-dwelling marsh and aquatic birds.The wetlands described here lie in relatively small, shallow basins that vary greatly in their ability to maintain surface water, and in their water chemistry, which varies from fresh to hypersaline. These wetlands occur in a wide variety of hydrological settings, in an area where annual and seasonal precipitation varies greatly in form and amount. Thus the presence of surface water in these wetlands is largely unpredictable. Superimposed on these phenomena are the effects of a variety of land uses, including pasture, cultivation, mechanical forage removal, idle conditions and burning. All those factors greatly affect the plant and animal communities found in these basins.This profile covers lacustrine and palustrine basins with temporarily flooded, seasonally flooded, and semipermanently flooded water regimes. Basins with these water regimes compose about 90% of the basins in the Prairie Pothole Region of the Dakotas. This profile outlines the wetland subsystems, classes and subclasses that occur in these basins, and provides a useful reference to their geologic, climatic, hydrologic, and pedologic setting.Detailed information on the biotic environment of the wetlands dealt with in this profile will be useful to scientists and resource managers. Special recognition is paid to the macrophyte and invertebrate communities, which have dynamic qualities found in few other of the world's wetland ecosystems.The most noteworthy animal inhabitants of these basins are waterfowl, which are a resource of international concern. Because of the importance of this resource, much research on the habitat use and feeding ecology of breeding waterfowl has been conducted in the region. These topics receive special attention in this profile.The Prairie Pothole Region is a major world supplier of cereal grains. Consequently, wetlands in the region are often drained for crop production or otherwise cropped when water conditions permit. These practices degrade the value of wetlands for most species of wildlife and conflict with the aims of conservationists. The subject of human uses and impacts to prairie wetlands is thus an important part of this profile.

Biological Report

International impact research and management

To be sustainable, ecotourism requires the protection of natural environments and processes both from development and operation of the tourism infrastructure, and from the activities of ecotourists within protected areas. This book chapter reviews the international literature on the study of visitor or recreation-related resource impacts with special reference to ecotourism. Four case examples are presented to characterize the geographic scope, focus, and principal findings of this recreation ecology literature and its relevance to ecotourism management. Case examples include the Cairngorms National Nature Reserve, Scotland; the Great Barrier Reef, Australia; the Central American tropics; and wildlife viewing in Kenya?s protected areas. Implications for the management of international protected areas and ecotourism resources are discussed.

Book chapter

Winter feeding of elk in the Greater Yellowstone Ecosystem and its effects on disease dynamics

Providing food to wildlife during periods when natural food is limited results in aggregations that may facilitate disease transmission. This is exemplified in western Wyoming where institutional feeding over the past century has aimed to mitigate wildlife–livestock conflict and minimize winter mortality of elk ( Cervus canadensis ). Here we review research across 23 winter feedgrounds where the most studied disease is brucellosis, caused by the bacterium Brucella abortus . Traditional veterinary practices (vaccination, test-and-slaughter) have thus far been unable to control this disease in elk, which can spill over to cattle. Current disease-reduction efforts are being guided by ecological research on elk movement and density, reproduction, stress, co-infections and scavengers. Given the right tools, feedgrounds could provide opportunities for adaptive management of brucellosis through regular animal testing and population-level manipulations. Our analyses of several such manipulations highlight the value of a research–management partnership guided by hypothesis testing, despite the constraints of the sociopolitical environment. However, brucellosis is now spreading in unfed elk herds, while other diseases (e.g. chronic wasting disease) are of increasing concern at feedgrounds. Therefore experimental closures of feedgrounds, reduced feeding and lower elk populations merit consideration.

Wyoming

Landscape transcriptomics as a tool for addressing global change effects across diverse species

Landscape transcriptomics is an emerging field studying how genome-wide expression patterns reflect dynamic landscape-scale environmental drivers, including habitat, weather, climate, and contaminants, and the subsequent effects on organismal function. This field is benefitting from advancing and increasingly accessible molecular technologies, which in turn are allowing the necessary characterization of transcriptomes from wild individuals distributed across natural landscapes. This research is especially important given the rapid pace of anthropogenic environmental change and potential impacts that span levels of biological organization. We discuss three major themes in landscape transcriptomic research: connecting transcriptome variation across landscapes to environmental variation, generating and testing hypotheses about the mechanisms and evolution of transcriptomic responses to the environment, and applying this knowledge to species conservation and management. We discuss challenges associated with this approach and suggest potential solutions. We conclude that landscape transcriptomics has great promise for addressing fundamental questions in organismal biology, ecology, and evolution, while providing tools needed for conservation and management of species.

Molecular Ecology Resources

The bee microbiome: Impact on bee health and model for evolution and ecology of host-microbe interactions

As pollinators, bees are cornerstones for terrestrial ecosystem stability and key components in agricultural productivity. All animals, including bees, are associated with a diverse community of microbes, commonly referred to as the microbiome. The bee microbiome is likely to be a crucial factor affecting host health. However, with the exception of a few pathogens, the impacts of most members of the bee microbiome on host health are poorly understood. Further, the evolutionary and ecological forces that shape and change the microbiome are unclear. Here, we discuss recent progress in our understanding of the bee microbiome, and we present challenges associated with its investigation. We conclude that global coordination of research efforts is needed to fully understand the complex and highly dynamic nature of the interplay between the bee microbiome, its host, and the environment. High-throughput sequencing technologies are ideal for exploring complex biological systems, including host-microbe interactions. To maximize their value and to improve assessment of the factors affecting bee health, sequence data should be archived, curated, and analyzed in ways that promote the synthesis of different studies. To this end, the BeeBiome consortium aims to develop an online database which would provide reference sequences, archive metadata, and host analytical resources. The goal would be to support applied and fundamental research on bees and their associated microbes and to provide a collaborative framework for sharing primary data from different research programs, thus furthering our understanding of the bee microbiome and its impact on pollinator health.

mBio

Synthesis centers as critical research infrastructure

Demand for the opportunity to participate in a synthesis-center activity has increased in the years since the US National Science Foundation (NSF)–funded National Center for Ecological Analysis and Synthesis (NCEAS) opened its doors in 1995 and as more scientists across a diversity of scientific disciplines have become aware of what synthesis centers provide. The NSF has funded four synthesis centers, and more than a dozen new synthesis centers have been established around the world, some following the NSF model and others following different models suited to their national funding environment ( http://synthesis-consortium.org ). Scientific synthesis integrates diverse data and knowledge to increase the scope and applicability of results and yield novel insights or explanations within and across disciplines (Pickett et al. 2007 , Carpenter et al. 2009 ). The demand for synthesis comes from the pressing societal need to address grand challenges related to global change and other issues that cut across multiple societal sectors and disciplines and from recognition that substantial added scientific value can be achieved through the synthesis-based analysis of existing data. Demand also comes from groups of scientists who see exciting opportunities to generate new knowledge from interdisciplinary and transdisciplinary collaboration, often capitalizing on the increasingly large volume and variety of available data (Kelling et al. 2009 , Bishop et al. 2014 , Specht et al. 2015b ). The ever-changing nature of societal challenges and the availability of data with which to address them suggest there will be an expanding need for synthesis. However, we are now entering a phase in which government support for some existing synthesis centers has ended or will be ending soon, forcing those centers to close or develop new operational models, approaches, and funding streams. We argue here that synthesis centers play such a unique role in science that continued long-term public investment to maximize benefits to science and society is justified. In particular, we argue that synthesis centers represent community infrastructure more akin to research vessels than to term-funded centers of science and technology (e.g., NSF Science and Technology Centers). Through our experience running synthesis centers and, in some cases, developing postfederal funding models, we offer our perspective on the purpose and value of synthesis centers. We present case studies of different outcomes of transition plans and argue for a fundamental shift in the conception of synthesis science and the strategic funding of these centers by government funding agencies.

BioScience

Benefits and impacts of road removal

Road removal is being used to mitigate the physical and ecological impacts of roads and to restore both public and private lands. Although many federal and state agencies and private landowners have created protocols for road removal and priorities for restoration, research has not kept pace with the rate of removal. Some research has been conducted on hydrologic and geomorphic restoration following road removal, but no studies have directly addressed restoring wildlife habitat. Road removal creates a short-term disturbance which may temporarily increase sediment loss. However, long-term monitoring and initial research have shown that road removal reduces chronic erosion and the risk of landslides. We review the hydrologic, geomorphic, and ecological benefits and impacts of three methods of road removal, identify knowledge gaps, and propose questions for future research, which is urgently needed to quantify how effectively road removal restores terrestrial, riparian, and aquatic habitat and other ecosystem processes.

Frontiers in Ecology and the Environment

The ecology of methane in streams and rivers: Patterns, controls, and global significance

Streams and rivers can substantially modify organic carbon (OC) inputs from terrestrial landscapes, and much of this processing is the result of microbial respiration. While carbon dioxide (CO 2 ) is the major end-product of ecosystem respiration, methane (CH 4 ) is also present in many fluvial environments even though methanogenesis typically requires anoxic conditions that may be scarce in these systems. Given recent recognition of the pervasiveness of this greenhouse gas in streams and rivers, we synthesized existing research and data to identify patterns and drivers of CH 4 , knowledge gaps, and research opportunities. This included examining the history of lotic CH 4 research, creating a database of concentrations and fluxes (MethDB) to generate a global-scale estimate of fluvial CH 4 efflux, and developing a conceptual framework and using this framework to consider how human activities may modify fluvial CH 4 dynamics. Current understanding of CH 4 in streams and rivers has been strongly influenced by goals of understanding OC processing and quantifying the contribution of CH 4 to ecosystem C fluxes. Less effort has been directed towards investigating processes that dictate in situ CH 4 production and loss. CH 4 makes a meager contribution to watershed or landscape C budgets, but streams and rivers are often significant CH 4 sources to the atmosphere across these same spatial extents. Most fluvial systems are supersaturated with CH 4 and we estimate an annual global emission of 26.8 Tg CH 4 , equivalent to ~15-40% of wetland and lake effluxes, respectively. Less clear is the role of CH 4 oxidation, methanogenesis, and total anaerobic respiration to whole ecosystem production and respiration. Controls on CH 4 generation and persistence can be viewed in terms of proximate controls that influence methanogenesis (organic matter, temperature, alternative electron acceptors, nutrients) and distal geomorphic and hydrologic drivers. Multiple controls combined with its extreme redox status and low solubility result in high spatial and temporal variance of CH 4 in fluvial environments, which presents a substantial challenge for understanding its larger-scale dynamics. Further understanding of CH 4 production and consumption, anaerobic metabolism, and ecosystem energetics in streams and rivers can be achieved through more directed studies and comparison with knowledge from terrestrial, wetland, and aquatic disciplines.

Ecological Monographs

Disease and infection in the Tetraonidae

Disease is one of many factors advanced to explain the fluctuations of grouse populations, but no profound study of natural disease losses in Tetraonidae exists. The literature contains frequent references to THE grouse disease, although many potential pathogens are listed in numerous surveys and limited investigations, and the relevant data indicate that no single etiologic agent is universally responsible for disease in grouse. Few experimental infections or related studies on parasite biology have been attempted. Well-trained personnel and specialized facilities are required for research and analysis (1) to develop new methods of interpretation to be used with existing census techniques, (2) to conduct intensive studies of ecological factors of host and habitat, and (3) to establish base lines for recognition of deviations from the norm. Disease in wildlife can be controlled only through management procedures based on information concerning the biology of pathogens, hosts, and environments. It cannot be studied as a separate entity if its impact on survival or population fluctuations of grouse is to be correctly assessed.

Journal of Wildlife Management

EAARL submarine topography: Biscayne National Park

This lidar-derived submarine topography map was produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs for the purposes of habitat mapping, ecological monitoring, change detection, and event assessment (for example: bleaching, hurricanes, disease outbreaks). As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring water depth and conducting cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to managers of coastal tropical habitats.

Florida

EAARL topography: Dry Tortugas National Park

This lidar-derived submarine topography map was produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs for the purposes of habitat mapping, ecological monitoring, change detection, ad event assessment (for example: bleaching, hurricanes, disease outbreaks). As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring water depth and conducting cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to managers of coastal tropical habitats.

Florida

Transformative environmental governance

Transformative governance is an approach to environmental governance that has the capacity to respond to, manage, and trigger regime shifts in coupled social-ecological systems (SESs) at multiple scales. The goal of transformative governance is to actively shift degraded SESs to alternative, more desirable, or more functional regimes by altering the structures and processes that define the system. Transformative governance is rooted in ecological theories to explain cross-scale dynamics in complex systems, as well as social theories of change, innovation, and technological transformation. Similar to adaptive governance, transformative governance involves a broad set of governance components, but requires additional capacity to foster new social-ecological regimes including increased risk tolerance, significant systemic investment, and restructured economies and power relations. Transformative governance has the potential to actively respond to regime shifts triggered by climate change, and thus future research should focus on identifying system drivers and leading indicators associated with social-ecological thresholds.

Annual Review of Environment and Resources

Tidal extension and sea-level rise: recommendations for a research agenda

Sea-level rise is pushing freshwater tides upstream into formerly non-tidal rivers. This tidal extension may increase the area of tidal freshwater ecosystems and offset loss of ecosystem functions due to salinization downstream. Without considering how gains in ecosystem functions could offset losses, landscape-scale assessments of ecosystem functions may be biased toward worst-case scenarios of loss. To stimulate research on this concept, we address three fundamental questions about tidal extension: Where will tidal extension be most evident, and can we measure it? What ecosystem functions are influenced by tidal extension, and how can we measure them? How do watershed processes, climate change, and tidal extension interact to affect ecosystem functions? Our preliminary answers lead to recommendations that will advance tidal extension research, enable better predictions of the impacts of sea-level rise, and help balance the landscape-scale benefits of ecosystem function with costs of response.

Frontiers in Ecology and the Environment

Thermal characteristics of amphibian microhabitats in a fire-disturbed landscape

Disturbance has long been a central issue in amphibian conservation, often regarding negative effects of logging or other forest management activities, but some amphibians seem to prefer disturbed habitats. After documenting increased use of recently burned forests by boreal toads (Bufo boreas), we hypothesized that burned habitats provided improved thermal opportunities in terrestrial habitats. We tested this hypothesis by conducting a radio telemetry study of habitat use (reported previously) and by using physical models that simulated the temperature of adult toads. We deployed 108 physical models in and adjacent to a 1-year old burn using a fully-replicated design with three burn severities (unburned, partial, high severity) and four microhabitats (open surface, under vegetation, under log, in burrow). Model temperatures were compared to a range of preferred temperatures in published studies. We found 70% more observations within the preferred temperature range of B. boreas in forests burned with high severity than in unburned areas. Burned forest was warmer than unburned forest across all microhabitats, but the largest relative difference was in burrows, which averaged 3 ??C warmer in high-severity burn areas and remained warmer though the night. More than twice as many observations were within the preferred temperature range in high-severity burrows than in unburned burrows. Areas burned with high severity were still warmer than unburned forest 3 years after the fire. Habitat use of toads during the concurrent radio telemetry study matched that predicted by the physical models. These results suggest there are fitness-linked benefits to toads using burned habitats, such as increased growth, fertility, and possibly disease resistance. However, increased soil temperatures that result from wildfire may be detrimental to other amphibian species that prefer cooler temperatures and stable environments. More broadly, our data illustrate the use of physical models to measure and interpret changes that amphibians may experience from disturbance, and highlight the need for research linking vital rates such as growth and survival to disturbance.

Forest Ecology and Management

A multi-marker assessment of sewage contamination in streams using human-associated indicator bacteria, human-specific viruses, and pharmaceuticals

Human sewage contaminates waterways, delivering excess nutrients, pathogens, chemicals, and other toxic contaminants. Contaminants and various sewage indicators are measured to monitor and assess water quality, but these analytes vary in their representation of sewage contamination and the inferences about water quality they support. We measured the occurrence and concentration of multiple microbiological ( n = 21) and chemical ( n = 106) markers at two urban stream locations in Milwaukee, Wisconsin, USA over two years. Five-day composite water samples ( n = 98) were collected biweekly, and sewage influent samples ( n = 25) were collected monthly at a Milwaukee, WI water reclamation facility. We found the vast majority of markers were not sensitive enough to detect sewage contamination. To compare analytes for monitoring applications, five consistently detected human sewage indicators were used to evaluate temporal patterns of sewage contamination, including microbiological (pepper mild mottle virus, human Bacteroides , human Lachnospiraceae ) and chemical (acetaminophen, metformin) markers. The proportion of human sewage in each stream was estimated using the mean influent concentration from the water reclamation facility and the mean concentration of all stream samples for each sewage indicator marker. Estimates of instream sewage pollution varied by marker, differing by up to two orders of magnitude, but four of the five sewage markers characterized Underwood Creek (mean proportions of human sewage ranged 0.0025 % - 0.075 %) as less polluted than Menomonee River (proportions ranged 0.013 % - 0.14 %) by an order of magnitude more. Chemical markers correlated with each other and yielded higher estimates of sewage pollution than microbial markers, which exhibited greater temporal variability. Transport, attenuation, and degradation processes can influence chemical and microbial markers differently and cause variation in human sewage estimates. Given the range of potential human and ecological health effects of human sewage contamination, robust characterization of sewage contamination that uses multiple lines of evidence supports monitoring and research applications.

Wisconsin

Systems approaches for coastal hazard assessment and resilience

The framework presented herein supports a changing paradigm in the approaches used by coastal researchers, engineers, and social scientists to model the impacts of climate change and sea level rise (SLR) in particular along low-gradient coastal landscapes. Use of a System of Systems (SoS) approach to the coastal dynamics of SLR is encouraged to capture the nonlinear feedbacks and dynamic responses of the bio-geo-physical coastal environment to SLR, while assessing the social, economic, and ecologic impacts. The SoS approach divides the coastal environment into smaller subsystems such as morphology, ecology, and hydrodynamics. Integrated models are used to assess the dynamic responses of subsystems to SLR; these models account for complex interactions and feedbacks among individual systems, which provides a more comprehensive evaluation of the future of the coastal system as a whole. Results from the integrated models can be used to inform economic services valuations, in which economic activity is connected back to bio-geo-physical changes in the environment due to SLR by identifying changes in the coastal subsystems, linking them to the understanding of the economic system and assessing the direct and indirect impacts to the economy. These assessments can be translated from scientific data to application through various stakeholder engagement mechanisms, which provide useful feedback for accountability as well as benchmarks and diagnostic insights for future planning. This allows regional and local coastal managers to create more comprehensive policies to reduce the risks associated with future SLR and enhance coastal resilience.

Book chapter