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At least 145 records · Page 8Linked to original sources
USGS2020

Dermal denticle assemblages in coral reef sediments correlate with conventional shark surveys

1. It is challenging to assess long-term trends in mobile, long-lived, and relatively rare species such as sharks. Despite ongoing declines in many coastal shark populations, conventional surveys might be too fleeting and too recent to describe population trends over decades to millennia. Placing recent shark declines into historical context should improve management efforts as well as our understanding of past ecosystem dynamics. 2. A new paleoecological approach for surveying shark abundance on coral reefs is to quantify dermal denticle assemblages preserved in sediments. This approach assumes that denticle accumulation rates correlate with shark abundances. Here, we test this assumption by comparing the denticle record in surface sediments to three conventional shark survey methods at Palmyra Atoll, Line Islands, central Pacific Ocean, where shark density is high and spatially heterogeneous. 3. We generally found a significant positive correlation between denticle accumulation rates and shark abundances derived from underwater visual census, baited remote underwater video, and hook and line surveys. 4. Denticle accumulation rates reflected shark abundances, suggesting that denticle assemblages can preserve a signal of time-averaged shark abundance in low-energy coral reef environments. We offer suggestions for applying this tool to measure shark abundance over long timescales in other contexts.

Methods in Ecology and Evolution↗
USGS2005

Comment on "Coral reef calcification and climate change: The effect of ocean warming"

McNeil et al. [2004] attempt to address an important question about the interactions of temperature and carbonate chemistry on calcification, but their projected values of reef calcification are based on assumptions that ignore critical observational and experimental literature. Certainly, more research is needed to better understand how changing temperatures and carbonate chemistry will affect not only coral reef calcification, but coral survival. As discussed above, the McNeil et al. [2004] analysis is based on assumptions that exclude potentially important factors and therefore needs to be viewed with caution. Copyright 2005 by the American Geophysical Union.

Geophysical Research Letters↗
USGS2006

Cross-shore velocity shear, eddies and heterogeneity in water column properties over fringing coral reefs: West Maui, Hawaii

A multi-day hydrographic survey cruise was conducted to acquire spatially extensive, but temporally limited, high-resolution, three-dimensional measurements of currents, temperature, salinity and turbidity off West Maui in the summer of 2003 to better understand coastal dynamics along a complex island shoreline with coral reefs. These data complement long-term, high-resolution tide, wave, current, temperature, salinity and turbidity measurements made at a number of fixed locations in the study area starting in 2001. Analyses of these hydrographic data, in conjunction with numerous field observations, evoke the following conceptual model of water and turbidity flux along West Maui. Wave- and wind-driven flows appear to be the primary control on flow over shallower portions of the reefs while tidal and subtidal currents dominate flow over the outer portions of the reefs and insular shelf. When the direction of these flows counter one another, which is quite common, they cause a zone of cross-shore horizontal shear and often form a front, with turbid, lower-salinity water inshore of the front and clear, higher-salinity water offshore of the front. It is not clear whether these zones of high shear and fronts are the cause or the result of the location of the fore reef, but they appear to be correlated alongshore over relatively large horizontal distances (orders of kilometers). When two flows converge or when a single flow is bathymetrically steered, eddies can be generated that, in the absence of large ocean surface waves, tend to accumulate material. Areas of higher turbidity and lower salinity tend to correlate with regions of poor coral health or the absence of well-developed reefs, suggesting that the oceanographic processes that concentrate and/or transport nutrients, contaminants, low-salinity water or suspended sediment might strongly influence coral reef ecosystem health and sustainability.

Continental Shelf Research↗
USGS2008

Coral reefs, present and past, on the west Florida shelf and platform margin: Chapter 4

This paper summarizes the geomorphic variability of these different reef types, their geologic setting, and the present coral-reef biological community. The paper is organized along a virtual depth transect by presenting different reef settings and types starting from the shallower mid-shelf or mid-ramp setting, moving to the shelf edge, and then to the deeper upper slope.

Florida↗
USGS2001

Ten years after the crime: Lasting effects of damage from a cruise ship anchor on a coral reef in St. John, U.S. Virgin Islands

In October 1988, a cruise ship dropped its anchor on a coral reef in Virgin Islands National Park, St. John, creating a distinct scar roughly 128 m long and 3 m wide from a depth of 22 m to a depth of 6 m. The anchor pulverized coral colonies and smashed part of the reef framework. In April 1991, nine permanent quadrats (1 m2) were established inside the scar over a depth range of 9 m to 12.5 m. At that time, average coral cover inside the scar was less than 1%. These quadrats were surveyed again in 1992, 1993, 1994, 1995 and 1998. Recruits of 19 coral species have been observed, with Agaricia agaricites and Porites spp. the most abundant. Quadrats surveyed outside the scar in June 1994 over the same depth range had a higher percent coral cover (mean = 7.4%, SD = 4.5) and greater average size (maximum length) of coral colonies than in quadrats inside the damaged area. Although coral recruits settle into the scar in high densities, live coral cover has not increased significantly in the last 10 yrs, reflecting poor survival and growth of newly settled corals. The relatively planar aspect of the scar may increase the vulnerability of the recruits to abrasion and mortality from shifting sediments. Ten years after the anchor damage occurred, live coral cover in the still-visible scar (mean = 2.6%, SD = 2.7) remains well below the cover found in the adjacent, undamaged reef.

Bulletin of Marine Science↗
USGS2006

New maps, new information: Coral reefs of the Florida keys

A highly detailed digitized map depicts 22 benthic habitats in 3140.5 km2 of the Florida Keys National Marine Sanctuary. Dominant are a seagrass/lime-mud zone (map area 27.5%) throughout Hawk Channel and seagrass/carbonate-sand (18.7%) and bare carbonate-sand (17.3%) zones on the outer shelf and in The Quicksands. A lime-mud/seagrass-covered muddy carbonate-sand zone (9.6%) abuts the keys. Hardbottom communities (13.2%) consist of bare Pleistocene coralline and oolitic limestone, coral rubble, and senile coral reefs. Smaller terrestrial (4.0%) and marine habitats, including those of live coral (patch reefs, 0.7%), account for the rest (13.7%) of the area. Derived from aerial photomosaics, the seabed dataset fits precisely when transposed onto a newly developed National Geophysical Data Center hydrographic-bathymetry map. Combined, the maps point to new information on unstudied seabed morphologies, among them an erosional nearshore rock ledge bordering the seaward side of the Florida Keys and thousands of patch-reef clusters aligned in mid-Hawk Channel. Preliminary indications are that the ledge may represent the seaward extent of the 125-ka Key Largo and Miami Limestone that form the keys, and the patch reefs colonized landward edges of two noncoralline, non-dune-ridge topographic troughs. The troughs, their substrate, and inner-shelf location along the seaward side of the Hawk Channel bedrock depression are the first of that type of nuclei to be recognized in the Florida reef record. Together, the map datasets establish the efficacy and accuracy of using aerial photographs to define in extraordinary detail the seabed features and habitats in a shallow-reef setting.

Journal of Coastal Research↗
USGS2004

LIDAR optical rugosity of coral reefs in Biscayne National Park, Florida

The NASA Experimental Advanced Airborne Research Lidar (EAARL), a temporal waveform-resolving, airborne, green wavelength LIDAR (light detection and ranging), is designed to measure the submeter-scale topography of shallow reef substrates. Topographic variability is a prime component of habitat complexity, an ecological factor that both expresses and controls the abundance and distribution of many reef organisms. Following the acquisition of EAARL coverage over both mid-platform patch reefs and shelf-margin bank reefs within Biscayne National Park in August 2002, EAARL-based optical indices of topographic variability were evaluated at 15 patch reef and bank reef sites. Several sites were selected to match reefs previously evaluated in situ along underwater video and belt transects. The analysis used large populations of submarine topographic transects derived from the examination of closely spaced laser spot reflections along LIDAR raster scans. At all 15 sites, each LIDAR transect was evaluated separately to determine optical rugosity (Rotran), and the average elevation difference between adjacent points (Av(??E ap)). Further, the whole-site mean and maximum values of Ro tran and Av(??Eap) for the entire population of transects at each analysis site, along with their standard deviations, were calculated. This study revealed that the greater habitat complexity of inshore patch reefs versus outer bank reefs results in relative differences in topographic complexity that can be discerned in the laser returns. Accordingly, LIDAR sensing of optical rugosity is proposed as a complementary new technique for the rapid assessment of shallow coral reefs. ?? Springer-Verlag 2004.

Coral Reefs↗
USGS2025

Assessing the effect of coral reef restoration location on coastal flood hazard along the San Juan Coastline, Puerto Rico

Coastal resilience has become a pressing global issue due to the growing vulnerability of coastlines to the effects of climate change. Nature-based solutions have emerged as a promising approach to coastal protection to not only enhance coastal resilience, but also restore critical ecosystems. Coral reef restoration has the potential to provide ecosystem services benefits; however, there are still key uncertainties in linking restoration design to reductions in coastal flood hazard under current and future climate conditions. In this study, we applied one-dimensional and two-dimensional numerical coastal engineering models, calibrated and validated using field data, to evaluate the effectiveness of coral restoration scenarios on coastal waves, water levels, and flooding along the coast of San Juan, Puerto Rico, U.S.A. Model results indicate a small reduction in maximum water levels under the proposed restoration scenarios. This underscores the importance of these endeavors, not only for ecological preservation but also for preventing further reef deterioration. Such preservation is essential for mitigating the increased coastal risks anticipated in the future. Results from this study provide information to guide policymakers and coastal managers in making informed decisions on viable restoration project design options. By systematically evaluating how restoration location impacts coastal flood hazards, communities can develop and implement proactive strategies to mitigate flood-related risk. In addition, by restoring coral reefs, communities can contribute to environmental preservation while ensuring sustainable development and protection of coastal environments.

Puerto Rico, San Juan coastline↗
USGS2008

Disease of coral and coral reef fishes

The Department of the Interior protects sensitive habitats amounting to about 3,600,000 acres of coral reefs and other submerged lands. These reefs are important ecosystems in 13 National Wildlife Refuges, 10 National Parks and in certain territorial waters such as the Wake Atoll.

Fact Sheet↗
USGS2019

Improving estimates of coral reef construction and erosion with in-situ measurements

The decline in living coral since the 1970s has conspicuously slowed reef construction on a global scale, but the related process of reef erosion is less visible and not often quantified. Here we present new data on the constructional and deconstructional side of the carbonate-budget equation in the Florida Keys, U.S.A. We documented Orbicella spp. calcification rates at four offshore reefs and quantified decadal-scale rates of Orbicella-reef erosion at a mid-shore patch reef. Using Orbicella coral heads fitted with permanent markers in 1998, we measured reef-elevation loss at 28 stations over 17.3 years to estimate a mean erosion rate of -5.5 (± 3.2, SD) mm yr-1. This loss equates to an erosion rate of -8.2 (± 4.8, SD) kg m-2 yr-1 on dead Orbicella colonies, or -6.6 kg m-2 yr-1 when adjusted reef-wide. Calculating net carbonate production using a census-based approach on the same patch reef in 2017, we estimated a reef-wide bioerosion rate of -1.9 (± 2.0, SD) kg m-2 yr-1, and a net carbonate production rate of 0.5 (± 0.3, SD) kg m-2 yr-1. Substituting the erosion rate we estimated with the markers would suggest that net carbonate production at this patch reef was lower and negative, -4.2 kg m-2 yr-1. This divergence could be a function of high erosion rates measured on the tops of Orbicella colonies, which may be preferentially targeted by parrotfish. Nonetheless, our study suggests the need for new field data to improve estimates of reef-structure persistence as coral reefs continue to degrade.

Florida↗
USGS2019

HyCReWW: A hybrid coral reef wave and water level metamodel

Wave-induced flooding is a major coastal hazard on tropical islands fronted by coral reefs. The variability of shape, size, and physical characteristics of the reefs across the globe make it difficult to obtain a parameterization of wave run-up, which is needed for risk assessments. Therefore, we developed the HyCReWW metamodel to predict wave run-up under a wide range of reef morphometric and offshore forcing characteristics. Due to the complexity and high dimensionality of the problem, we assumed an idealized one-dimensional reef profile, characterized by seven primary parameters. XBeach Non-Hydrostatic was chosen to create the synthetic dataset, and Radial Basis Functions implemented in MATLAB® were chosen for interpolation. Results demonstrate the applicability of the metamodel to obtain fast and accurate results of wave run-up for a large range of intrinsic reef morphologic and extrinsic hydrodynamic forcing parameters, offering a useful tool for risk management and early warning systems.

Computers & Geosciences↗
USGS2012

An apparent "vital effect" of calcification rate on the Sr/Ca temperature proxy in the reef coral Montipora capitata

Measuring the strontium to calcium ratio in coral skeletons reveals information on seawater temperatures during skeletal deposition, but studies have shown additional variables may affect the ratio. Here we measured Sr/Ca in the reef coral, Montipora capitata, grown in six mesocosms continuously supplied with seawater from the adjacent reef flat. Three mesocosms were ambient controls, and three had seawater chemistry simulating "ocean acidification" (OA). We found that Sr/Ca was not affected by the OA treatment, and neither was coral calcification for these small colonies (larger colonies did show an OA effect). The lack of OA effects allowed us to test the hypothesis that coral growth rate can affect Sr/Ca using the natural range in calcification rates of the corals grown at the same temperature. We found that Sr/Ca was inversely related to calcification rate (Sr/Ca = 9.39 - 0.00404 mmol/mol * mg day-1 cm-2, R2 = 0.32). Using a previously published calibration curve for this species, a 22 mg day-1 colony-1 increase in calcification rate introduced a 1°C warmer temperature estimate, with the 27 corals reporting "temperatures" ranging from 24.9 to 28.9, with mean 26.6 ± 0.9°C SD. Our results lend support to hypotheses invoking kinetic processes and growth rate to explain vital effects on Sr/Ca. However, uncertainty in the slope of the regression of Sr/Ca on calcification and a low R-squared value lead us to conclude that Sr/Ca could still be a useful proxy in this species given sufficient replication or by including growth rate in the calibration.

Geochemistry, Geophysics, Geosystems↗
USGS2011

Productivity of a coral reef using boundary layer and enclosure methods

The metabolism of Cayo Enrique Reef, Puerto Rico, was studied using in situ methods during March 2009. Benthic O 2 fluxes were used to calculate net community production using both the boundary layer gradient and enclosure techniques. The boundary layer O 2 gradient and the drag coefficients were used to calculate productivity ranging from −12.3 to 13.7 mmol O 2 m −2 h −1 . Productivity measurements from the enclosure method ranged from −11.0 to 12.9 mmol O 2 m −2 h −1 . During the study, the mean hourly difference between the methods was 0.65 mmol O 2 m −2 h −1 (r 2 = 0.92), resulting in well‐reconciled estimates of net community production between the boundary layer (−33.1 mmol m −2 d −1 ) and enclosure (−46.3 mmol m −2 d −1 ) techniques. The results of these independent approaches corroborate quantified rates of metabolism at Cayo Enrique Reef. Close agreement between methods demonstrates that boundary layer measurements can provide near real‐time assessments of coral reef health.

Puerto Rico↗
USGS2021

Effects of low pH on the coral reef cryptic invertebrate communities near CO2 vents in Papua New Guinea

Small cryptic invertebrates (the cryptofauna) are extremely abundant, ecologically important, and species rich on coral reefs. Ongoing ocean acidification is likely to have both direct effects on the biology of these organisms, as well as indirect effects through cascading impacts on their habitats and trophic relationships. Naturally acidified habitats have been important model systems for studying these complex interactions because entire communities that are adapted to these environmental conditions can be analyzed. However, few studies have examined the cryptofauna because they are difficult to census quantitatively in topographically complex habitats and are challenging to identify. We addressed these challenges by using Autonomous Reef Monitoring Structures (ARMS) for sampling reef-dwelling invertebrates >2 mm in size and by using DNA barcoding for taxonomic identifications. The study took place in Papua New Guinea at two reef localities, each with three sites at varying distances from carbon dioxide seeps, thereby sampling across a natural gradient in acidification. We observed sharp overall declines in both the abundance (34–56%) and diversity (42–45%) of organisms in ARMS under the lowest pH conditions sampled (7.64–7.75). However, the overall abundance of gastropods increased slightly in lower pH conditions, and crustacean and gastropod families exhibited varying patterns. There was also variability in response between the two localities, despite their close proximity, as one control pH site displayed unusually low diversity and abundances for all invertebrate groups. The data illustrate the complexity of responses of the reef fauna to pH conditions, and the role of additional factors that influence the diversity and abundance of cryptic reef invertebrates.

Milne Bay Province↗
USGS2022

A synthesis of coral reef research at Buck Island Reef National Monument and Salt River Bay National Historical Park and Ecological Preserve, St. Croix, U.S. Virgin Islands: 1961 to 2022

This synthesis focuses on the history of research on coral reefs within two U.S. National Park Service units in St. Croix, U.S. Virgin Islands: Buck Island Reef National Monument (from 1961 to 2022) and Salt River Bay National Historical Park and Ecological Preserve (from 1980 to 2022). Buck Island Reef National Monument (BUIS) is off the north shore of the island of St. Croix, in the U.S. Virgin Islands. Established in 1961 and expanded in 2001, it is under the jurisdiction of the National Park Service (NPS). Long-term monitoring programs maintained by the NPS and jointly by the University of the Virgin Islands (UVI) and the Virgin Islands Department of Planning and Natural Resources (VIDPN).

U.S. Virgin Islands, Buck Island Reef National Mon↗
USGS2021

Coral reef resilience differs among islands within the Gulf of Mannar, southeast India, following successive coral bleaching events

We used a 12-yr data set of benthic cover (2005–2017), spanning two bleaching events, to assess changes in benthic cover and coral community composition along 21 islands within Gulf of Mannar (GoM), southeast India. Overall, between 2005 and 2017 reefs had a simultaneous decrease in relative coral cover (avg. = − 36%) and increase in algal cover (avg. = + 45%). Changes in benthic cover were not consistent among islands, ranging from − 34 to + 5% for coral cover and from − 0.3 to + 50% for algae. There was a spatial gradient in coral mortality, which increased among islands from west to east. However, there was a disconnect between coral loss and subsequent increases in algae. Algal cover increased more on islands in west GoM where coral loss was minimal. Environmental co-factors (coral cover, percent bleaching, degree heating weeks, fish densities, Chl-a, pollution) explained > 50% of the benthic cover responses to successive bleaching. Coral survival was favored on islands with higher fish densities and chlorophyll-a levels, and increases in algal cover were associated with higher measures of pollution from terrestrial runoff. Coral morphotypes differed in their response following successive bleaching resulting in changes in the relative abundance of different coral morphotypes. Existing climate projections (RCP8.5) indicate a 22-yr gap in the onset of annual severe bleaching (ASB) for reefs in the east versus west GoM, and ASB was ameliorated for all reefs under the RCP4.5 projections. There is limited knowledge of the resilience of GoM reefs, and this study identifies coral morphotypes and reefs that are most likely to recover or decline from successive bleaching, in the context of forecasts of the frequency of future bleaching events in GoM.

Gulf of Mannar↗
USGS2019

Geochemical sourcing of runoff from a young volcanic watershed to an impacted coral reef in Pelekane Bay, Hawaii

Runoff of sediment and other contaminants from developed watersheds threatens coastal ecosystems and services. A sediment geochemical sourcing study was undertaken on a sediment-impacted coral reef flat to identify terrestrial sediment sources and how these changed over time. Geochemical signatures were identified for watershed soils that formed on Hawaiian basaltic and alkalic lavas using relatively immobile compatible (Ni, Sc) and incompatible (Nb, REE , Th) elements quantified by ICP-MS in total decompositions of the fine fraction of surface soils. Some soils also contained ash from late-erupting cinder cones that added alkalic geochemical signatures, resulting in distinctive mixed signatures near these geologic features. Sediment was collected in Pelekane Bay using sediment traps during winter 2010–2011 and a sediment core in order to geochemically source runoff entering the bay. Geochemical signatures in trapped sediment showed that runoff predominantly originated from the lower watershed along a highway corridor rather than from the upper watershed or areas with alkalic lavas. Soil in the highway corridor also contained Zn above levels of concern for aquatic organisms and anthropogenic Pb, indications that runoff control measures could reduce the exposure of the reef community to potentially toxic metals and other road-associated contaminants. The upper portion of a 60-yr long sediment record from Pelekane Bay was disturbed by tsunamigenic waves from the Tohoku earthquake , and the remainder was likely subject to mixing by winter waves that averaged out geochemical variations. On average, watershed regions with basaltic soils were the predominant source of runoff to the bay over the past 60 years. By linking sediment runoff to geographic regions or features in watersheds, geochemical sourcing can provide insights that allow resource managers to direct runoff mitigation and soil conservation efforts to areas where they will be most effective.

Hawaii↗
USGS2011

Hydrodynamics of a bathymetrically complex fringing coral reef embayment: Wave climate, in situ observations, and wave prediction

This paper examines the relationship between offshore wave climate and nearshore waves and currents at Hanalei Bay, Hawaii, an exposed bay fringed with coral reefs. Analysis of both offshore in situ data and numerical hindcasts identify the predominance of two wave conditions: a mode associated with local trade winds and an episodic pattern associated with distant source long-period swells. Analysis of 10 months of in situ data within the bay show that current velocities are up to an order of magnitude greater during long-period swell episodes than during trade wind conditions; overall circulation patterns are also fundamentally different. The current velocities are highly correlated with incident wave heights during the swell episodes, while they are not during the modal trade wind conditions. A phase-averaged wave model was implemented with the dual purpose of evaluating application to bathymetrically complex fringing reefs and to examine the propagation of waves into the nearshore in an effort to better explain the large difference in observed circulation during the two offshore wave conditions. The prediction quality of this model was poorer for the episodic condition than for the lower-energy mode, however, it illustrated how longer-period swells are preferentially refracted into the bay and make available far more nearshore wave energy to drive currents compared to waves during modal conditions. The highly episodic circulation, the nature of which is dependent on complex refraction patterns of episodic, long-period swell has implications for flushing and sediment dynamics for incised fringing reef-lined bays that characterize many high islands at low latitudes around the world.

Hawai'i↗