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At least 145 records · Page 8Linked to original sources

USGS1990

Thermal maturity of Jurassic shales from the Newark Basin, U.S.A.: Influence of hydrothermal fluids and implications to basin modeling

Organic geochemical investigations were conducted on a series of cores that systematically sampled the uppermost Jurassic strata from the northern Newark Basin. Each sedimentary unit consists of fluvial red sandstones and siltstones with cyclic deposits of interbedded black lacustrine shales and gray deltaic siltstones. In a suite of organic-rich shales from the Boonton, Towaco and Feltville Formations, organic maturation parameters were used to determine aspects of the thermal history of the Newark Basin. Comparisons of model calculations and measured maturities support 39 Ar/ 40 Ar-geochronometer studies that indicate a hydrothermal event occurred ∼175 Ma ago. An increase in the regional geothermal gradient to ∼7.5°C/100 m for ∼5 Ma best conforms to the organic geochemical observations. Biomarker compounds in Boonton and Towaco strata should have been relatively unaltered by this regional event, but anomalous molecular distributions in the organic-rich rocks may have resulted from localized heating by hydrothermal fluids. The effects of this interaction would be very subtle and may be indistinguishable from variations caused by differences in organic facies. Within this uncertainty, sterane and hopane isomerization and steroid aromatization reactions advanced in the Boonton and Towaco Formation strata primarily because of burial and normal geothermal heating that followed the hydrothermal event. Biomarker kinetic models indicate that ∼2400 m of Boonton and post-Boonton strata were eroded after basinal uplift commenced ∼50 Ma ago.

Applied Geochemistry↗

USGS2016

Organic petrology and geochemistry of mudrocks from the lacustrine Lucaogou Formation, Santanghu Basin, northwest China: Application to lake basin evolution

Exploration for tight oil in the frontier Santanghu Basin of northwest China has resulted in recent commercial discoveries sourced from the lacustrine Upper Permian Lucaogou Formation, already considered a “world class source rock” in the Junggar Basin to the west. Here we apply an integrated analytical program to carbonate-dominated mudrocks from the Lucaogou Formation in Santanghu Basin to document the nature of organic matter (OM) in the context of an evolving lake system. The organic-rich samples (TOC 2.8–11.4 wt%; n = 10) were widely spaced from an ~ 200 m cored section, interpreted from textural and mineralogical evidence to document transition from a lower under-filled to an overlying balanced-filled lake. Organic matter is dominated by moderate to strongly fluorescent amorphous material with Type I geochemical signature (HI values 510–755; n = 10) occurring in a continuum from lamellar stringers, 10–20 μm thick, some ≥ 1 mm in length (possible microbial mat; preserved only in lower under-filled section) to finely-disseminated amorphous groundmass intimately intermixed with mineral matrix. Biomarkers for methanotrophs and photosynthetic cyanobacteria indicate a complex microbial consortium. A unicellular prasinophyte green alga(?), similar to Tasmanites in marine rocks, is present as discrete flattened discs 50–100 μm in diameter. Type III OM including vitrinite (some fluorescent) and inertinite also is abundant. Solid bitumen, indicating local kerogen conversion, fills voids and occurs throughout the cored section. Vitrinite reflectance values are 0.47–0.58%, consistent with strong OM fluorescence but may be “suppressed”. Other proxies, e.g., biomarker parameters, indicate the Lucaogou Formation is in the early oil window at this location. On average, slightly more amorphous OM and telalginite are present in the lower section, consistent with a shallow, stratified, saline environment with low sediment dilution. More inertinite is present in the upper section, indicating greater terrestrial influx and consistent with higher quartz and plagioclase content (dominantly authigenic chalcedony and albite). Laminated mudstones in the upper section indicate anoxia prevented bioturbation from benthic grazing, also indicating stratified water column conditions. A decrease upsection in authigenic dolomite with reciprocal increase of ankerite/siderite is consistent with decreasing salinity, as is an overall decrease in gammacerane index values. These observations suggest evolution from a shallow, stratified evaporative (saline) setting to a deeper, stratified freshwater basin with higher water input during Lucaogou deposition. The evolution from an under-filled to balance-filled lake in Santanghu Basin is similar to Lucaogou deposition in Junggar Basin, suggesting similar tectonic and climatic controls. Paleoclimate interpretations from other researchers in this area suggested an evolution from semi-arid to humid conditions during the Roadian; we interpret that the evolution from an under-filled to balanced-filled lake seen in our data is in response to climate change, and may represent increased groundwater delivery to the Santanghu Basin.

International Journal of Coal Geology↗

USGS2013

Gonadal abnormalities in frogs (Lithobates spp.) collected from managed wetlands in an agricultural region of Nebraska, USA

Nebraska's Rainwater Basin (RWB) provides important wetland habitat for North American migratory birds. Concern exists that pesticide and nutrient runoff from surrounding row-crops enters wetlands degrading water quality and adversely affecting birds and wildlife. Frogs may be especially vulnerable. Plains leopard (Lithobates blairi) metamorphs from RWB wetlands with varying concentrations of pesticides were evaluated for a suite of biomarkers of exposure to endocrine active chemicals. Froglets had ovarian dysgenesis, high rates of testicular oocytes, and female-biased sex ratios however, there was no clear statistical association between pesticide concentrations and biomarkers. Data interpretation was hindered because timing and duration of exposures were unknown and due to an incomplete understanding of L. blairi sexual development. Emphasis is on describing the complex developmental biology of closely-related leopard frogs, how this understanding can explain RWB L. blairi anomalies, and the need for sampling at the appropriate life stage.

Nebraska↗

USGS2010

Microbial carbon cycling in oligotrophic regional aquifers near the Tono Uranium Mine, Japan as inferred from δ13C and Δ14C values of in situ phospholipid fatty acids and carbon sources

Microorganisms are ubiquitous in deep subsurface environments, but their role in the global carbon cycle is not well-understood. The natural abundance δ 13 C and Δ 14 C values of microbial membrane phospholipid fatty acids (PLFAs) were measured and used to assess the carbon sources of bacteria in sedimentary and granitic groundwaters sampled from three boreholes in the vicinity of the Tono Uranium Mine, Gifu, Japan. Sample storage experiments were performed and drill waters analyzed to characterize potential sources of microbial contamination. The most abundant PLFA structures in all waters sampled were 16:0, 16:1ω7 c , cy 17:0, and 18:1ω7 c . A PLFA biomarker for type II methanotrophs, 18:1ω8 c , comprised 3% and 18% of total PLFAs in anoxic sedimentary and granitic waters, respectively, sampled from the KNA-6 borehole. The presence of this biomarker was unexpected given that type II methanotrophs are considered obligate aerobes. However, a bacterium that grows aerobically with CH 4 as the sole energy source and which also produces 56% of its total PLFAs as 18:1ω8 c was isolated from both waters, providing additional evidence for the presence of type II methanotrophs. The Δ 14 C values determined for type II methanotroph PLFAs in the sedimentary (−861‰) and granite (−867‰) waters were very similar to the Δ 14 C values of dissolved inorganic carbon (DIC) in each water (∼−850‰). This suggests that type II methanotrophs ultimately derive all their carbon from inorganic sources, whether directly from DIC and/or from CH 4 produced by the reduction of DIC. In contrast, δ 13 C values of type II PLFAs in the sedimentary (−93‰) and granite (−60‰) waters indicate that these organisms use different carbon assimilation schemes in each environment despite very similar δ 13 C CH 4 "> δ13CCH4 values (∼−95‰) for each water. The δ 13 C PLFA values (−28‰ to −45‰) of non-methanotrophic bacteria in the KNA-6 LTL water do not clearly distinguish between heterotrophic and autotrophic metabolisms, but Δ 14 C PLFA values indicate that >65% of total bacteria filtered from the KNA-6 LTL water are heterotrophs. Ancient Δ 14 C values (∼−1000‰) of some PLFAs suggest that many heterotrophs utilize ancient organic matter, perhaps from lignite seams within the sedimentary rocks. The more negative range of δ 13 C PLFA values determined for the KNA-6 granitic water (−42‰ to −66‰) are likely the result of a microbial ecosystem dominated by chemolithoautotrophy, perhaps fuelled by abiogenic H 2 . Results of sample storage experiments showed substantial shifts in microbial community composition and δ 13 C PLFA values (as much as 5‰) during 2–4 days of dark, refrigerated, aseptic storage. However, water samples collected and immediately filtered back in the lab from freshly drilled MSB-2 borehole appeared to maintain the same relative relationships between δ 13 C PLFA values for sedimentary and granitic host rocks as observed for samples directly filtered under artesian flow from the KNA-6 borehole of the Tono Uranium Mine.

Tono Uranium Mine↗

USGS2020

Trends in thermal maturity indicators for the organic sulfur-rich Eagle Ford Shale

Thermal maturity is critical to evaluate petroleum systems and to interpret biomarker results for paleoenvironmental and geobiology studies. Many thermal maturity indices were developed for marine source rocks containing type II kerogen, but their behavior in organic sulfur-rich source rocks requires more investigation. Here, we present geochemical analyses of whole and extracted rock, isolated kerogens, and extractable organic matter across a natural thermal maturity transect of the Upper Cretaceous Eagle Ford Shale to evaluate the behavior of maturity parameters in organic sulfur-rich source rocks. The samples contain similar mineralogy and trace element composition, minimizing potential facies effects on thermal maturity parameters. Atomic H/C ratios of isolated kerogens, extractable organic matter yield, and programmed pyrolysis results show that the samples range from the pre-oil through dry gas generation windows. Programmed pyrolysis data and kerogen elemental ratios show that the immature samples host both type IIS (atomic Sorg/C > 0.04) and sulfur-rich type II kerogen (kerogen Sorg/C: 0.032 to 0.045) while the samples with lower kerogen Sorg/C ratios (kerogen Sorg/C < 0.03) are more mature. The vitrinite reflectance values corresponding to the onset of oil generation in the Eagle Ford are comparable to other type II petroleum systems. Likewise, the organic sulfur-rich Eagle Ford follows a similar hydrogen index and kerogen H/C trend as other marine type II source rocks. Hopane and sterane stereoisomer maturity ratios are anomalously elevated at low thermal maturities, so they should not be applied in organic sulfur-rich petroleum systems to infer thermal maturity. However, some biomarker ratios, including those that are more commonly used as source parameters, strongly track thermal maturity in this case study with limited facies variability.

Texas↗

USGS2007

Diamondoid hydrocarbons as a molecular proxy for thermal maturity and oil cracking: Geochemical models from hydrous pyrolysis

A series of isothermal hydrous pyrolysis experiments was performed on immature sedimentary rocks and peats of different lithology and organic source input to explore the generation of diamondoids during the thermal maturation of sediments. Oil generation curves indicate that peak oil yields occur between 340 and 360 ??C, followed by intense oil cracking in different samples. The biomarker maturity parameters appear to be insensitive to thermal maturation as most of the isomerization ratios of molecular biomarkers in the pyrolysates have reached their equilibrium values. Diamondoids are absent from immature peat extracts, but exist in immature sedimentary rocks in various amounts. This implies that they are not products of biosynthesis and that they may be generated during diagenesis, not just catagenesis and cracking. Most importantly, the concentrations of diamondoids are observed to increase with thermal stress, suggesting that they can be used as a molecular proxy for thermal maturity of source rocks and crude oils. Their abundance is most sensitive to thermal exposure above temperatures of 360-370 ??C (R0 = 1.3-1.5%) for the studied samples, which corresponds to the onset of intense cracking of other less stable components. Below these temperatures, diamondoids increase gradually due to competing processes of generation and dilution. Calibrations were developed between their concentrations and measured vitrinite reflectance through hydrous pyrolysis maturation of different types of rocks and peats. The geochemical models obtained from these methods may provide an alterative approach for determining thermal maturity of source rocks and crude oils, particularly in mature to highly mature Paleozoic carbonates. In addition, the extent of oil cracking was quantified using the concentrations of diamondoids in hydrous pyrolysates of rocks and peats, verifying that these hydrocarbons are valuable indicators of oil cracking in nature. ?? 2006 Elsevier Ltd. All rights reserved.

Organic Geochemistry↗

USGS2008

Restoration of Circum-Arctic Upper Jurassic source rock paleolatitude based on crude oil geochemistry

Tectonic geochemical paleolatitude (TGP) models were developed to predict the paleolatitude of petroleum source rock from the geochemical composition of crude oil. The results validate studies designed to reconstruct ancient source rock depositional environments using oil chemistry and tectonic reconstruction of paleogeography from coordinates of the present day collection site. TGP models can also be used to corroborate tectonic paleolatitude in cases where the predicted paleogeography conflicts with the depositional setting predicted by the oil chemistry, or to predict paleolatitude when the present day collection locality is far removed from the source rock, as might occur due to long distance subsurface migration or transport of tarballs by ocean currents. Biomarker and stable carbon isotope ratios were measured for 496 crude oil samples inferred to originate from Upper Jurassic source rock in West Siberia, the North Sea and offshore Labrador. First, a unique, multi-tiered chemometric (multivariate statistics) decision tree was used to classify these samples into seven oil families and infer the type of organic matter, lithology and depositional environment of each organofacies of source rock [Peters, K.E., Ramos, L.S., Zumberge, J.E., Valin, Z.C., Scotese, C.R., Gautier, D.L., 2007. Circum-Arctic petroleum systems identified using decision-tree chemometrics. American Association of Petroleum Geologists Bulletin 91, 877-913]. Second, present day geographic locations for each sample were used to restore the tectonic paleolatitude of the source rock during Late Jurassic time (???150 Ma). Third, partial least squares regression (PLSR) was used to construct linear TGP models that relate tectonic and geochemical paleolatitude, where the latter is based on 19 source-related biomarker and isotope ratios for each oil family. The TGP models were calibrated using 70% of the samples in each family and the remaining 30% of samples were used for model validation. Positive relationships exist between tectonic and geochemical paleolatitude for each family. Standard error of prediction for geochemical paleolatitude ranges from 0.9?? to 2.6?? of tectonic paleolatitude, which translates to a relative standard error of prediction in the range 1.5-4.8%. The results suggest that the observed effect of source rock paleolatitude on crude oil composition is caused by (i) stable carbon isotope fractionation during photosynthetic fixation of carbon and (ii) species diversity at different latitudes during Late Jurassic time. ?? 2008 Elsevier Ltd. All rights reserved.

Organic Geochemistry↗

USGS2013

Reproductive health of yellow perch Perca flavescens in selected tributaries of the Chesapeake Bay

Reduced recruitment of yellow perch has been noted for a number of years in certain urbanized watersheds (South and Severn Rivers) of the Chesapeake Bay. Other rapidly developing watersheds such as Mattawoman Creek are more recently showing evidence of reduced recruitment of anadromous fishes. In this study, we used a battery of biomarkers to better document the reproductive health of adult yellow perch collected during spring spawning in 2007–2009. Perch were collected in the South and Severn Rivers, Mattawoman Creek and the less developed Choptank and Allen's Fresh watersheds for comparison. Gonadosomatic indices, plasma reproductive hormone concentrations, plasma vitellogenin concentrations and gonad histology were evaluated in mature perch of both sexes. In addition, sperm quantity (cell counts) and quality (total and progressive motility, spermatogenic stage and DNA integrity), were measured in male perch. Many of these biomarkers varied annually and spatially, with some interesting statistical results and trends. Male perch from the Choptank and Allen's Fresh had generally higher sperm counts. In 2008 counts were significantly lower in the perch from the Severn when compared to other sites. The major microscopic gonadal abnormality in males was the proliferation of putative Leydig cells, observed in testes from Severn and less commonly, Mattawoman Creek perch. Observations that could significantly impact egg viability were an apparent lack of final maturation, abnormal yolk and thin, irregular zona pellucida. These were observed primarily in ovaries from Severn, South and less commonly Mattawoman Creek perch. The potential association of these observations with urbanization, impervious surface and chemical contaminants is discussed.

Maryl;Virginia↗

USGS2023

Multi-omic responses of fish exposed to complex chemical mixtures in the Shenandoah River watershed

To evaluate relationships between different anthropogenic impacts, contaminant occurrence, and fish health, we conducted in situ fish exposures across the Shenandoah River watershed at five sites with different land use. Exposure water was analyzed for over 500 chemical constituents, and organismal, metabolomic, and transcriptomic endpoints were measured in fathead minnows. Adverse reproductive outcomes were observed in fish exposed in the upper watershed at both wastewater treatment plant (WWTP) effluent- and agriculture-impacted sites, including decreased gonadosomatic index and altered secondary sex characteristics. This was accompanied with increased mortality at the site most impacted by agricultural activities. Molecular biomarkers of estrogen exposure were unchanged and consistent with low or non-detectable concentrations of common estrogens, indicating that alternative mechanisms were involved in organismal adverse outcomes. Hepatic metabolomic and transcriptomic profiles were altered in a site-specific manner, consistent with variation in land use and contaminant profiles. Integrated biomarker response data were useful for evaluating mechanistic linkages between contaminants and adverse outcomes, suggesting that reproductive endocrine disruption, altered lipid processes, and immunosuppression may have been involved in these organismal impacts. This study demonstrated linkages between human-impact, contaminant occurrence, and exposure effects in the Shenandoah River watershed and showed increased risk of adverse outcomes in fathead minnows exposed to complex mixtures at sites impacted by municipal wastewater discharges and agricultural practices.

Virginia, West Virginia↗

USGS2024

Prokaryotic microbial ecology as an ecosurveillance tool for eukaryotic pathogen colonisation: Meiothermus and Naegleria fowleri

Naegleria fowleri has been detected in drinking water distribution systems (DWDS) in Australia, Pakistan and the United States and is the causative agent of the highly fatal disease primary amoebic meningoencephalitis. Previous small scale field studies have shown that Meiothermus may be a potential biomarker for N. fowleri . However, correlations between predictive biomarkers in small sample sizes often breakdown when applied to larger more representative datasets. This study represents one of the largest and most rigorous temporal investigations of Naegleria fowleri colonisation in an operational DWDS in the world and measured the association of Meiothermus and N. fowleri over a significantly larger space and time in the DWDS. A total of 232 samples were collected from five sites over three-years (2016-2018), which contained 29 positive N. fowleri samples. Two specific operational taxonomic units assigned to M. chliarophilus and M. hypogaeus, were significantly associated with N. fowleri presence. Furthermore, inoculation experiments demonstrated that Meiothermus was required to support N. fowleri growth in field-collected biofilms. This validates Meiothermus as prospective biological tool to aid in the identification and surveillance of N. fowleri colonisable sites.

Water Research↗

USGS1998

Artificial maturation of an immature sulfur- and organic matter-rich limestone from the Ghareb Formation, Jordan

An immature (Ro=0.39%), S-rich (S(org)/C = 0.07), organic matter-rich (19.6 wt. % TOC) limestone from the Ghareb Formation (Upper Cretaceous) in Jordan was artificially matured by hydrous pyrolysis (200, 220 ..., 300??C; 72 h) to study the effect of progressive diagenesis and early catagenesis on the amounts and distributions of hydrocarbons, organic sulfur compounds and S-rich geomacromolecules. The use of internal standards allowed the determination of absolute amounts. With increasing thermal maturation, large amounts of alkanes and alkylthiophenes with predominantly linear carbon skeletons are generated from the kerogen. The alkylthiophene isomer distributions do not change significantly with increasing thermal maturation, indicating the applicability of alkylthiophenes as biomarkers at relatively high levels of thermal maturity. For a given carbon skeleton, the saturated hydrocarbon, alkylthiophenes and alkylbenzo[b]thiophenes are stable forms at relatively high temperatures, whereas the alkylsulfides are not stable. The large amount of alkylthiophenes produced relative to the alkanes may be explained by the large number of monosulfide links per carbon skeleton. These results are in good agreement with those obtained previously for an artificial maturation series of an immature S-rich sample from the Gessoso-solfifera Formation.An immature (Ro = 0.39%), S-rich (Sorg/C = 0.07), organic matter-rich (19.6 wt.% TOC) limestone from the Ghareb Formation (Upper Cretaceous) in Jordan was artificially matured by hydrous pyrolysis (200, 220, ..., 300??C; 72 h) to study the effect of progressive diagenesis and early catagenesis on the amounts and distributions of hydrocarbons, organic sulfur compounds and S-rich geomacromolecules. The use of internal standards allowed the determination of absolute amounts. With increasing thermal maturation, large amounts of alkanes and alkylthiophenes with predominantly linear carbon skeletons are generated from the kerogen. The alkylthiophene isomer distributions do not change significantly with increasing thermal maturation, indicating the applicability of alkylthiophenes as biomarkers at relatively high levels of thermal maturity. For a given carbon skeleton, the saturated hydrocarbon, alkylthiophene and alkylbenzo[b]thiophenes are stable forms at relatively high temperatures, whereas the alkylsulfides are not stable. The large amount of alkylthiophenes produced relative to the alkanes may be explained by the large number of monosulfide links per carbon skeleton. These results are in good agreement with those obtained previously for an artificial maturation series of an immature S-rich sample from the Gessoso-solfifera Formation.

Organic Geochemistry↗

USGS1997

Organic geochemical study of sequences overlying coal seams; example from the Mansfield Formation (Lower Pennsylvanian), Indiana

Roof successions above two coal seams from the Mansfield Formation (Lower Pennsylvanian) in the Indiana portion of the Illinois Basin have been studied with regard to sedimentary structures, organic petrology and organic geochemistry. The succession above the Blue Creek Member of the Mansfield Formation is typical of the lithologies covering low-sulphur coals (< 1%) in the area studied, whereas the succession above the unnamed Mansfield coal is typical of high-sulphur coals (>2.%). The transgressive-regressive packages above both seams reflect the periodic inundation of coastal mires by tidal flats and creeks as inferred from bioturbation and sedimentary structures such as tidal rhythmites and clay-draped ripple bedforms. Geochemistry and petrology of organic facies above the Blue Creek coal suggest that tidal flats formed inland in fresh-water environments. These overlying fresh water sediments prevented saline waters from invading the peat, contributing to low-sulphur content in the coal. Above the unnamed coal, trace fossils and geochemical and petrological characteristics of organic facies suggest more unrestricted seaward depositional environment. The absence of saline or typically marine biomarkers above this coal is interpreted as evidence of very short periods of marine transgression, as there was not enough time for establishment of the precursor organisms for marine biomarkers. However, sufficient time passed to raise SO 4 2− concentration in pore waters, resulting in the formation of authigenic pyrite and sulphur incorparation into organic matter.

International Journal of Coal Geology↗

USGS2009

Organic geochemistry and sources of natural aquatic foams

Aquatic foams and stream-water samples were collected from two pristine sites for humic substances isolation and characterization. Biomarker compounds identified in foam and stream humic substances included phospholipid fatty acids, steroids, and lignin. Results showed that foams had a 10 to 20 fold greater DOC concentration and were enriched in humic substances (90% by weight of DOC) that showed increased hydrophobicity, aliphatic character, and compositional complexity compared to host stream humic substances (55 to 81% by weight of DOC). Foam humic substances also were enriched in humic acid (36 to 83% by weight) compared to host stream humic substances (10 to 14% by weight). Biomarkers, which contributed less than 5% by weight to the DOC pool, indicated higher plants, bacteria, algae, fungi, and diatoms as DOC sources. It is proposed that aquatic foams may be important media for the concentration and transport of organic substances in the aquatic environment.

ACS Symposium Series↗

USGS2017

Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments

Despite accounting for the majority of sedimentary methane, the physiology and relative abundance of subsurface methanogens remain poorly understood. We combined intact polar lipid and metagenome techniques to better constrain the presence and functions of methanogens within the highly reducing, organic-rich sediments of Antarctica’s Adélie Basin. The assembly of metagenomic sequence data identified phylogenic and functional marker genes of methanogens and generated the first Methanosaeta sp. genome from a deep subsurface sedimentary environment. Based on structural and isotopic measurements, glycerol dialkyl glycerol tetraethers with diglycosyl phosphatidylglycerol head groups were classified as biomarkers for active methanogens. The stable carbon isotope (δ 13 C) values of these biomarkers and the Methanosaeta partial genome suggest that these organisms are acetoclastic methanogens and represent a relatively small (0.2%) but active population. Metagenomic and lipid analyses suggest that Thaumarchaeota and heterotrophic bacteria co-exist with Methanosaeta and together contribute to increasing concentrations and δ 13 C values of dissolved inorganic carbon with depth. This study presents the first functional insights of deep subsurface Methanosaeta organisms and highlights their role in methane production and overall carbon cycling within sedimentary environments.

ISME Journal↗

USGS2018

Paleocene–Eocene Thermal Maximum prolonged by fossil carbon oxidation

A hallmark of the rapid and massive release of carbon during the Palaeocene–Eocene Thermal Maximum is the global negative carbon isotope excursion. The delayed recovery of the carbon isotope excursion, however, indicates that CO 2 inputs continued well after the initial rapid onset, although there is no consensus about the source of this secondary carbon. Here we suggest this secondary input might have derived partly from the oxidation of remobilized sedimentary fossil carbon. We measured the biomarker indicators of thermal maturation in shelf records from the US Mid-Atlantic coast, constructed biomarker mixing models to constrain the amount of fossil carbon in US Mid-Atlantic and Tanzania coastal records, estimated the fossil carbon accumulation rate in coastal sediments and determined the range of global CO 2 release from fossil carbon reservoirs. This work provides evidence for an order of magnitude increase in fossil carbon delivery to the oceans that began ~10–20 kyr after the event onset and demonstrates that the oxidation of remobilized fossil carbon released between 10 2 and 10 4 PgC as CO 2 during the body of the Palaeocene–Eocene Thermal Maximum. The estimated mass is sufficient to have sustained the elevated atmospheric CO 2 levels required by the prolonged global carbon isotope excursion. Even after considering uncertainties in the sedimentation rates, these results indicate that the enhanced erosion, mobilization and oxidation of ancient sedimentary carbon contributed to the delayed recovery of the climate system for many thousands of years.

Nature Geoscience↗

USGS2015

A laboratory evaluation of tagging-related mortality and tag loss in juvenile humpback chub

We quantified tag retention, survival, and growth in juvenile, captive-reared Humpback Chub Gila cypha marked with three different tag types: (1) Biomark 12.5-mm, 134.2-kHz, full duplex PIT tags injected into the body cavity with a 12-gauge needle; (2) Biomark 8.4-mm, 134.2-kHz, full duplex PIT tags injected with a 16-gauge needle; and (3) Northwest Marine Technology visible implant elastomer (VIE) tags injected under the skin with a 29-gauge needle. Estimates of tag loss, tagging-induced mortality, and growth were evaluated for 60 d with each tag type for four different size-groups of fish: 40–49 mm, 50–59 mm, 60–69 mm, and 70–79 mm TL. Total length was a significant predictor of the probability of PIT tag retention and mortality for both 8-mm and 12-mm PIT tags, and the smallest fish had the highest rates of tag loss (12.5–30.0%) and mortality (7.5–20.0%). Humpback Chub of sizes 40–49 mm TL and tagged with VIE tags had no mortality but did have a 17.5% tag loss. Growth rates of all tagged fish were similar to controls. Our data indicate Humpback Chub can be effectively tagged using either 8-mm or 12-mm PIT tags with little tag loss or mortality at sizes as low as 65 mm TL.

North American Journal of Fisheries Management↗

USGS2006

Cell proliferation detected with flow cytometric cell cycle analysis and immunohistochemical detection of Proliferating Cell Nuclear Antigen (PCNA) from somatic tissues of Eastern Oysters, Crassostrea virginica

Two novel biomarker of response assays were developed and compared for use with bivalves. Bivalve mollusks are often used as bioindicators to monitor contaminant body burdens and are employed globally in pollution monitoring and as sentinels of environmental quality. The prevalence of proliferating cells in tissues of the eastern oyster, Crassostrea virginica , (n = 10) was investigated by using immunohistochemical staining of proliferating cell nuclear antigen (PCNA) and by flow cytometric analysis of DNA in cell cycle phases. The PCNA protein is highly conserved and central to DNA synthesis in dividing cells. This protein was detected by using a commercial antibody in the histological staining of gills, mantle, digestive gland, stomach, and labial palps. Cells obtained from these same organs and from the hearts of the oysters were used for flow cytometry (FCM). The proportions of nuclei in the S plus G2/M and G2/M fractions were compared with percentages of PCNA-positive cells scored through microscopy. Proliferation responses generated by microscopy and FCM (S plus G2/M) were equal for digestive gland, gills, stomach, and mantle. The proliferation response in labial palps was significantly higher by PCNA microscopy than by DNA FCM (S plus G2/M). For PCNA microscopy results, a significantly higher proliferation response was noted both for labial palps as compared to gills and mantle and for stomach and digestive gland as compared to gills (P < 0.005). For DNA FCM results, the percentages of proliferating cells in G2M fractions were significantly higher for labial palps and heart when compared to gills, mantle, and digestive gland. By FCM (S plus G2M), the percentages of proliferating cells followed a similar trend, although no significant differences were found between organs. The choice of a relatively highly proliferative tissue, such as labial palps as determined by this study, has utility for developing a cell line, for examining proliferation as a biomarker due to stressor impacts in feral oysters, and for detecting impacts of compounds on proliferative mechanisms.

Environmental Bioindicators↗

USGS2023

Differential heat shock protein responses in two species of Pacific salmon and their utility in identifying heat stress

Rapid and accelerating warming of salmon habitat has the potential to lower productivity of Pacific salmon ( Oncorhynchus species) populations. Heat stress biomarkers can indicate where warming is most likely affecting fish populations; however, we often lack clear classifications that separate individuals with and without heat stress needed to make these tools operational. We conducted a heat exposure experiment with trials lasting 12 or 36 h using juvenile Chinook salmon ( Oncorhynchus tshawytscha ) and coho salmon ( Oncorhynchus kisutch ) to validate heat stress biomarkers in white muscle. Following habituation to 13°C, individuals were exposed to water temperatures that increased to 15°C, 17°C, 19°C, 21°C or 23°C. Heat shock protein 70 abundance (HSP70 measured by ELISA) and transcription of 13 genes (mRNA measured by qPCR) including three heat shock protein genes ( hsp70, hsp90, hsp27 ) were measured. A distinct heat stress response was apparent by 21°C in juvenile Chinook salmon and 23°C in juvenile coho salmon using HSP70. A threshold for heat stress classification in Chinook salmon of > 2 ng HSP70 mg .1 total protein identified heat stress in 100% of 21 and 23°C treated individuals compared to 4% in cooler treatments. For coho salmon, > 3 ng HSP70 mg .1 total protein identified heat stress in 100% of 23°C treated individuals compared to 4% in cooler treatments. Transcription from a panel of genes separated individuals between cooler and stressful temperature experiences (≥21°C for Chinook salmon and ≥23°C for coho salmon) with ~ 85% correct classification. Our findings indicate that juvenile Chinook salmon were more temperature-sensitive than juvenile coho salmon and support the use of a HSP70 threshold sampled from muscle for assessing heat stress in individual wild Pacific salmon with an option for non-lethal biopsies for spawning adults.

Conservation Physiology↗