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USGS2020

Hydrogeology and shallow groundwater quality in the tidal Anacostia River watershed, Washington, D.C.

Groundwater hydrology and geochemistry within the tidal Anacostia River watershed of Washington, D.C. are related to natural and human influences. The U.S. Geological Survey, in cooperation with the District Department of Energy & Environment, began investigating the hydrogeology and groundwater quality of the watershed in 2002. Lithologic coring, groundwater-level and tidal monitoring, and water-quality sampling have been conducted to improve understanding of the groundwater-flow system, geochemistry, water quality, and the likely interaction between groundwater and the tidal Anacostia River. The flow and interaction of shallow groundwater with the tidal Anacostia River and other area streams are affected by diversions, pumping, land reclamation, and other human activities in this highly urbanized watershed. The tidal Anacostia River watershed is underlain by a wedge of unconsolidated sediments that is part of the Atlantic Coastal Plain Physiographic Province. These sediments form a system of confined and unconfined aquifers. The coarse sediments of the Potomac Group sand-dominated lithofacies form the Patuxent aquifer. The Patuxent aquifer crops out and subcrops in the northwestern part of the study area, but is confined to the southeast by the overlying Potomac Group clay-dominated lithofacies. Overlying the Potomac Group is a series of interbedded sands and clays that form an unconfined surficial aquifer system. Regional correlation in the unconfined surficial aquifer system is complicated by local heterogeneity in aquifer sediments. Local perched and semi-confined conditions occur in some areas. Recharge of the confined Patuxent aquifer occurs primarily in the outcrop and subcrop area, although some recharge may also occur through overlying confining units. Recharge to the unconfined surficial aquifer system occurs through infiltration of precipitation and possible artificial recharge from structures such as underground water or sewer pipes. In the Patuxent aquifer, hydraulic gradients indicate downward movement in the outcrop area, whereas hydraulic heads beneath the Anacostia River are higher than land surface, indicating an upward hydraulic gradient. In the unconfined surficial aquifer system, groundwater generally flows from upland recharge areas towards discharge areas near the Anacostia River and its tributaries. Groundwater from the confined part of the Patuxent aquifer also may discharge to the Anacostia River in locations where the overlying clay-dominated lithofacies of the Potomac Group is absent as a result of past geologic and (or) alluvial processes. Geochemistry and groundwater quality are affected by hydrologic conditions as well as anthropogenic influences. Local variability in groundwater quality reflects local variability in hydrogeologic conditions and sources of chemicals. Groundwater ranges from anoxic and iron- or calcium-bicarbonate type, to oxic with elevated nitrate. The occurrence and distribution of pesticides, volatile organic compounds, and other selected chemical compounds in groundwater reflect the multitude of sources common to urban areas, as well as variable hydrogeologic and geochemical conditions that affect their fate and transport in the environment. Overall, concentrations of only a few of the over 200 chemical constituents included in laboratory analyses exceeded regulatory standards or guidance values. These include tetrachloroethene and arsenic, which were each detected one time in different wells. There were also several detections of iron and manganese that exceeded regulatory standards or guidance values that are associated with reducing conditions in aquifer sediments.

Washington, D.C.↗

USGS1999

Hydrogeology of the unsaturated zone, North Ramp area of the Exploratory Studies Facility, Yucca Mountain, Nevada

Yucca Mountain, in southern Nevada, is being investigated by the U.S. Department of Energy as a potential site for a repository for high-level radioactive waste. This report documents the results of surface-based geologic, pneumatic, hydrologic, and geochemical studies conducted during 1992 to 1996 by the U.S. Geological Survey in the vicinity of the North Ramp of the Exploratory Studies Facility (ESF) that are pertinent to understanding multiphase fluid flow within the deep unsaturated zone. Detailed stratigraphic and structural characteristics of the study area provided the hydrogeologic framework for these investigations. Multiple lines of evidence indicate that gas flow and liquid flow within the welded tuffs of the unsaturated zone occur primarily through fractures. Fracture densities are highest in the Tiva Canyon welded (TCw) and Topopah Spring welded (TSw) hydrogeologic units. Although fracture density is much lower in the intervening nonwelded and bedded tuffs of the Paintbrush nonwelded hydrogeologic unit (PTn), pneumatic and aqueous-phase isotopic evidence indicates that substantial secondary permeability is present locally in the PTn, especially in the vicinity of faults. Borehole air-injection tests indicate that bulk air-permeability ranges from 3.5x10 -14 to 5.4x10 -11 square meters for the welded tuffs and from 1.2x10 -13 to 3.0x10 -12 square meters for the non welded and bedded tuffs of the PTn. Analyses of in-situ pneumatic-pressure data from monitored boreholes produced estimates of bulk permeability that were comparable to those determined from the air-injection tests. In many cases, both sets of estimates are two to three orders of magnitude larger than estimates based on laboratory analyses of unfractured core samples. The in-situ pneumatic-pressure records also indicate that the unsaturated-zone pneumatic system consists of four subsystems that coincide with the four major hydrogeologic units of the unsaturated zone at Yucca Mountain. In descending order, these hydrogeologic units are the Tiva Canyon welded (TCw), Paintbrush nonwelded (PTn), Topopah Spring welded (TSw ), and Calico Hills nonwelded (CHn). Deep percolation takes place as episodic pulses of inflow that propagate rapidly to depth and apparently bypass most of the rock matrix. Field-scale and core-scale water potentials throughout much of the PTn and TSw are very high, generally greater than -0.3 megapascals, and are nearly depth invariant. Thus, the imbibition capacity of the densely welded tuffs, at least near fractures, is very small because of low matrix permeabilities and low water-potential gradients across the fracture-matrix interface. The combination of high fracture permeability, high water potentials, high matrix saturations, and low matrix permeabilities results in a percolation environment that favors deep fracture flow. The episodic pulses of inflow are evidenced in the sporadic but nevertheless commonplace occurrence of water with concentrations of radioactive isotopes indicative of origins postdating the atmospheric testing of nuclear weapons. High concentrations of tritium have been detected at many horizons within the PTn and in the top of the TSw. Much lower concentrations of tritium, indicating the mixing of a bomb-pulse component with older water, have been detected in the deeper sections of the TSw and in the CHn. Evidence for fracture flow also is apparent in the widespread occurrence of perched water with chemical and isotopic signatures that indicate a fracture-flow origin for at least some of this water. In the North Ramp area, perched water has been detected at the base of the Topopah Spring Tuff or in the top of the underlying non welded to partially welded tuffs of the Calico Hills Formation in every dry-drilled borehole of sufficient depth to penetrate the Topopah Spring Tuff-Calico Hills Formation contact. The concentrations of the major ions of the perched water are similar to that of TSw pore water at borehole UZ-14, CHn pore water, and saturated-zone water at boreholes NRG-7 a and SD-9. The absolute chloride concentration of the perched water, however, is much lower than the chloride concentration of pore water from either the PTn or the TSw. The chemical and isotopic compositions of perched water indicate that this water was derived primarily from fracture flow, with little or no contribution from water in the matrix of the overlying rock. Carbon-14 ages of perched water range from 3,000 to 7,000 years. Strontium-87 isotope ratios indicate dissolution of surficial pedogenic calcite and calcite fracture fillings, which supports a fracture-flow origin for perched water. Moreover, carbon-13 and deuterium isotope values indicate rapid infiltration into fractures with little or no prior evaporation. Evidence for deep fracture flow into the Calico Hills Formation at UZ-14 is indicated by carbon-14 values that are from 65 and 95 percent modem carbon, equivalent to apparent ages of about 3,500 to 500 years. Some of these ages are younger than age estimates for perched water in the overlying Topopah Spring Tuff and are much younger than any that could be derived from a matrix-flow model. Evidence is lacking for extensive lateral flow within the PTn or for interception and diversion of this flow downward along structural pathways (faults), two key features of the original conceptual model for unsaturated flow at Yucca Mountain. Where data are available to infer lateral flow in the PTn, it is not certain that fracture flow could not have produced the same results. Pneumatic data, derived primarily from analysis of the interference effects from excavation of the North Ramp tunnel, indicate that faults within the Topopah Spring Tuff are open over substantial distances and are very permeable. Tunnel-boring-induced pneumatic disturbances have been propagated along these faults over distances that exceed 500 meters. These disturbances also have been detected in the pneumatic-pressure record of the overlying PTn in the vicinity of these faults. In spite of the apparent high permeability of faults, the existing data have neither confirmed nor refuted the hypothetical role of these faults in intercepting lateral flow from within or from above the PTn and diverting this flow downward into the deeper subsurface. On the basis of measured temperature gradients within the TSw, deep percolation appears to be greatest beneath active channels of major drainages, diminishing toward the margins and hillslopes bordering these channels. Numerical simulations indicate that this downward percolation is accompanied by lateral spreading as the percolation front moves downward through the PTn and across the contact between the PTn and underlying TSw. Temperature data from a well-documented site in Pagany Wash indicate the presence of a significant heat-flow deficit between the PTn and underlying TSw that most likely is due to nonconductive heat-flow processes with substantial capacity to extract heat. Percolation fluxes on the order of 10 to 20 millimeters per year beneath the Pagany Wash channel and on the order of 5 millimeters per year or less beneath the hillslopes bordering this drainage accounted for the apparent heat-flow deficit. Analyses of borehole temperature gradients in Drill Hole Wash indicate similar percolation fluxes and flux distributions within that drainage. An analysis of residence times estimated from uncorrected carbon-14 activities of perched-water samples and estimates for the volume of the structurally controlled reservoir, however, showed that the perched-water reservoir intersected by borehole UZ-14 under Drill Hole Wash could be sustained by percolation fluxes through the TSw of as little as 0.001 to 0.29 millimeter per year. The significance and implications of these findings with respect to waste isolation are discussed in the appendix of this report.

Nevada↗

USGS2008

Lithofacies, Age, and Sequence Stratigraphy of the Carboniferous Lisburne Group in the Skimo Creek Area, Central Brooks Range

The Lisburne Group, a mainly Carboniferous carbonate succession that is widely distributed across northern Alaska, contains notable amounts of oil and gas at Prudhoe Bay. Detailed studies of the Lisburne in the Skimo Creek area, central Brooks Range, delineate its lithofacies, age, conodont biofacies, depositional environments, and sequence stratigraphy and provide new data on its hydrocarbon source-rock and reservoir potential, as well as its thermal history, in this area. We have studied the Lisburne Group in two thrust sheets of the Endicott Mountains allochthon, herein called the Skimo and Tiglukpuk thrust sheets. The southern, Skimo Creek section, which is >900 m thick, is composed largely of even-bedded to nodular lime mudstone and wackestone intercalated with intervals of thin- to thick-bedded bioclastic packstone and grainstone. Some parts of the section are partially to completely dolomitized and (or) replaced by chert. A distinctive, 30-m-thick zone of black, organic-rich shale, lime mudstone, and phosphorite is exposed 170 m below the top of the Lisburne. The uppermost 40 m of section is also distinctive and made up of dark shale, lime mudstone, spiculite, and glauconitic grainstone. The northern, Tiglukpuk Creek section, which is similar to the Skimo Creek section but only ~760 m thick, includes more packstone and grainstone and less organic-rich shale. Analyses of conodonts and foraminifers indicate that both sections range in age from late Early Mississippian (Osagean) through Early Pennsylvanian (early Morrowan) and document a hiatus of at least 15 m.y. at the contact between the Lisburne and the overlying Siksikpuk Formation. No evidence of subaerial exposure was observed along this contact, which may represent a submarine erosional surface. Lithofacies and biofacies imply that the Lisburne Group in the study area was deposited mainly in midramp to outer-ramp settings. Deepest water strata are mud rich and formed below storm or fair-weather wave base on the outer ramp to outer midramp; shallowest facies are storm, sand-wave, and shoal deposits of the inner midramp to inner ramp. A relatively diverse, open-marine fauna occurs throughout much of the Lisburne in the study area, but some beds also contain clasts typical of more restricted, shallow-water environments that were likely transported seaward by storms and currents. Radiolarians are abundant in the shale and phosphorite unit at Skimo Creek and also occur in equivalent strata at Tiglukpuk Creek; high gamma-ray response and elevated total organic-carbon contents (max 5?8 weight percent) also characterize this unit at Skimo Creek. Lithologic, faunal, and geochemical data all suggest that these rocks formed mainly in an outer-ramp to basinal setting with low sedimentation rates, high productivity, and poorly oxygenated bottom water. Shale and mudstone at the top of the Lisburne Group accumulated in a similarly sediment starved, mainly outer ramp environment but lack comparable evidence for high nutrient and low oxygen levels during deposition. Vertical shifts in rock types and faunas delineate numerous parasequences and six probable third-order sequences in the study area; the same sequences are also recognized in the Lisburne Group to the east. Transgressive-system tracts in these sequences generally fine upward, whereas highstand-system tracts coarsen upward. Sequences in the Tiglukpuk Creek section are mostly thinner, contain thinner and more numerous parasequences, and accumulated in somewhat shallower settings than those in the Skimo Creek section. These differences reflect the more seaward position and, thus, increased accommodation space of the Skimo Creek section relative to the Tiglukpuk Creek section during deposition. Organic-rich calcareous shale in the shale and phosphorite unit has a cumulative thickness of at least 15 m and a lateral extent of >50 km; this lithology is the best potential hydrocarbon source rock in the Lisburne Group

Professional Paper↗

USGS2015

Avian malaria in Hawaiian forest birds: Infection and population impacts across species and elevations

Wildlife diseases can present significant threats to ecological systems and biological diversity, as well as domestic animal and human health. However, determining the dynamics of wildlife diseases and understanding the impact on host populations is a significant challenge. In Hawai‘i, there is ample circumstantial evidence that introduced avian malaria ( Plasmodium relictum ) has played an important role in the decline and extinction of many native forest birds. However, few studies have attempted to estimate disease transmission and mortality, survival, and individual species impacts in this distinctive ecosystem. We combined multi-state capture-recapture (longitudinal) models with cumulative age-prevalence (cross-sectional) models to evaluate these patterns in Apapane, Hawai‘i Amakihi, and Iiwi in low-, mid-, and high-elevation forests on the island of Hawai‘i based on four longitudinal studies of 3–7 years in length. We found species-specific patterns of malaria prevalence, transmission, and mortality rates that varied among elevations, likely in response to ecological factors that drive mosquito abundance. Malaria infection was highest at low elevations, moderate at mid elevations, and limited in high-elevation forests. Infection rates were highest for Iiwi and Apapane, likely contributing to the absence of these species in low-elevation forests. Adult malaria fatality rates were highest for Iiwi, intermediate for Amakihi at mid and high elevations, and lower for Apapane; low-elevation Amakihi had the lowest malaria fatality, providing strong evidence of malaria tolerance in this low-elevation population. Our study indicates that hatch-year birds may have greater malaria infection and/or fatality rates than adults. Our study also found that mosquitoes prefer feeding on Amakihi rather than Apapane, but Apapane are likely a more important reservoir for malaria transmission to mosquitoes. Our approach, based on host abundance and infection rates, may be an effective alternative to mosquito blood meal analysis for determining vector-host contacts when mosquito densities are low and collection of blood-fed mosquitoes is impractical. Our study supports the hypothesis that avian malaria has been a primary factor influencing the elevational distribution and abundance of these three species, and likely limits other native Hawaiian species that are susceptible to malaria.

Hawai'i↗

USGS2012

Evaluation of stream flow effects on smolt survival in the Yakima River basin, Washington

Study Summary The influence of stream flow on salmon smolt emigration survival is a topic of widespread management interest. We collected smolt survival data to inform flow management decisions in the Yakima Basin. The Yakima River watershed drains the eastern slopes of the Cascade Mountain Range in central Washington State. The upper basin is comprised of two major tributaries–the Naches River and the upper Yakima River. Headwater storage reservoirs capture runoff during the winter and spring seasons to support downstream irrigation needs. During summer months, water is conveyed through the upper Yakima River and diverted at Roza Dam, a major irrigation diversion that supplies water to the Roza Irrigation District and to a hydroelectric plant located near Yakima, Washington. To assess smolt survival in the 18 km reach downstream of Roza Dam, a radio telemetry project will be carried out over a three-year timeframe. The first year of study was designed to provide baseline survival estimates at two distinct flow treatments during the spring migration period. The goal was to establish flow treatments that were as divergent as possible in order to maximize the observed effect of environmental conditions on smolt survival. In total, three experimental trials were carried out in 2012–one during low flow conditions (<600 cfs) and two during high flows (>3000 cfs). Data from the first year will be used to determine experimental design requirements to adequately address study objectives in years two and three. In the spring of 2012, fixed telemetry monitoring stations were established in strategic locations upstream and downstream of Roza Dam. Yearling Chinook salmon Oncorhynchus tshawytscha smolts originating from Cle Elum Hatchery were captured at the Roza Dam fish screen bypass facility, implanted with radio tags, and released upstream of Roza Dam. Each release group of 50 fish was paired with a high or low flow condition. Fish movements were tracked as tagged fish passed each monitoring station during their migration down the upper Yakima River, through Roza Dam, past the Naches River confluence, and eventually through Sunnyside and Prosser Dams. At the conclusion of field data collection, survival rates for each release group were calculated using Cormack-Jolly-Seber mark-recapture models. Yearling Chinook smolt survival and travel time estimates from 2012 suggest that migration rates and survival rates in the Roza Reach may be associated with stream flow, water temperature, release timing (i.e. migratory disposition), and fish size, but the extent to which each variable influenced survival is yet to be determined. The lowest survival rate (61%) and longest travel time (median 2.26 days) was observed in Release Group 1, which had the smallest size distribution and experienced the lowest flows, lowest temperatures, and earliest release date among the three groups. Release Groups 2 and 3 survived at 96% and 98% respectively and traveled through the Roza Reach in less than eight hours. The primary focus of years two and three of this study will be to collect data that minimizes the effect of confounding explanatory variables, so that flow effects on emigration survival can be quantified independent of these other influential factors.

Washington↗

USGS2025

Salinas Valley integrated hydrologic and reservoir operations models, Monterey and San Luis Obispo Counties, California

The area surrounding the Salinas Valley groundwater basin in Monterey and San Luis Obispo Counties of California is a highly productive agricultural area, contributes significantly to the local economy, and provides a substantial portion of vegetables and other agricultural commodities to the Nation. This region of California provides about half of the Nation’s lettuce, celery, broccoli, and spinach each year. Thus, this agricultural area provides significant volumes of agricultural products not just for California but the entire United States. Changes in population and increased agricultural development, which includes a shift toward more water-intensive crops, and climate variability, have put increasing demand on both surface water and groundwater resources in the valley. This has resulted in water management challenges in the Salinas Valley that are predominantly related to distribution of water supply throughout the basin. Where and when the water is present in the surface and subsurface does not coincide with where and when the water is needed. To deal with the distribution issue, historically water has been used conjunctively in the valley. Conjunctive use is a water management strategy that coordinates surface water and groundwater use to maximize water availability. Groundwater is used throughout the Salinas Valley to meet water demands when surface water supplies are insufficient. Availability of surface water is constrained by climate. Precipitation and streamflow vary seasonally and year to year. Although there are two reservoirs in the Salinas Valley to capture and store water during wet periods, the only conveyance of reservoir water to coastal agricultural areas is the Salinas River. Increasing demand on groundwater and surface water resources throughout the Salinas Valley has resulted in undesirable effects of unsustainable water use, such as surface water depletion, groundwater level declines, storage depletion in the principal aquifers, and seawater intrusion. To address these escalating issues, local communities, water management agencies, and groundwater sustainability agencies are evaluating how to sustainably manage both their surface water and groundwater resources. To meet water demands and reduce undesirable effects of unsustainable water use, continued conjunctive management of surface water and groundwater would ideally incorporate strategies to deal with increases in demand and a variable climate. To evaluate the challenging water management issues in the Salinas Valley, the U.S. Geological Survey, Monterey County Water Resource Agency, and the Salinas Valley Basin Groundwater Sustainability Agency developed a comprehensive suite of models that represent the Salinas Valley Hydrogeologic system called the Salinas Valley System Model. The Salinas Valley Geologic Framework was developed to characterize the subsurface using various topographic and geologic data sources, including information on hydrogeologic units, their surfaces and extents, geologic structures, lithology, and elevations from borehole data and cross sections, as well as details on faults and existing models. The Salinas Valley Watershed Model simulates the entire Salinas River watershed. Monthly surface water inflows into the integrated hydrologic model domain were simulated using the Salinas Valley Watershed Model. The historical model uses historical climate data, water and land use data, and reservoir releases to simulate agricultural operations, including landscape water demands, diversions, and reclaimed wastewater. The operational model adds an embedded reservoir operations framework to the simulation of the historical model that allows specified operational rules to simulate reservoir releases and changes in reservoir storage. The operational model assumes current reservoir operations and constant land use, which differs from historical conditions. Thus, the operational model is a hypothetical baseline model that can be used by local water managers to evaluate and quantify potential benefits of water supply projects. Together, the geologic framework, watershed, historical, and operational models form a tool that can be used to simulate irrigated agriculture and associated reservoir operations of the integrated hydrologic system of the Salinas Valley.

EarthArXiv↗

USGS2019

Tectono-magmatic evolution of porphyry belts in the central Tethys region of Turkey, the Caucasus, Iran, western Pakistan, and southern Afghanistan

Exploration in the central Tethys region of Turkey, Armenia, Azerbaijan, Georgia, Iran, and weste rn Pakistan has led to the identification of the giant Reko Diq (24 Mt Cu and 1300 t Au), Sar Cheshmeh (8.9 Mt Cu and 0.46 Mt Mo), Sungun (5.1 Mt Cu and 0.20 Mt Mo), and Kadjaran (4.6 Mt Cu, 0.94 Mt Mo, and 1100 t Au), and 10 other large (1–2 Mt Cu) porphyry deposits including Saindak, Cevizlidere, Teghout, Meiduk, and Halilağa. Continued exploration efforts have also resulted in the development of porphyry-related gold deposits such as Kişladağ (9.6 Moz Au), Çöpler (3.7 Moz Au), Aği Daği (1.7 Moz Au), and Sary Gunay (3.0 Moz Au), and in the generation of several other promising exploration projects. The distribution in space and time of porphyry deposits in the central Tethys region was shaped by complex pre- to post-mineral tectonic, igneous, collisional, uplift and burial events. These events are represented by a partially-overlapping and variably exhumed and covered collage of twenty-six Early Jurassic to Holocene magmatic belts permissive for the occurrence of porphyry deposits (porphyry tracts and sub-tracts). Twelve tracts or sub-tracts are characterized by compressional continental arcs that formed on drifting terranes or continental margins, 10 developed in compressional to extensional intra-oceanic arc and backarc-rift settings, and 4 formed in extensional post-collisional environments over amalgamated terranes. Eight of these belts were variably affected by coeval and younger metamorphic, fold-and-thrust, and extensional faulting events. Fifty-four porphyry Au-(Cu), Cu-Au, Cu-Mo, Mo-Cu deposits, 15 porphyry-related Au, Au-(Mo) and W-(Mo-Au) deposits, 239 porphyry prospects, and 68 other porphyry-related mineral sites were identified in the study region. Of the 376 porphyry and porphyry-related sites, about 11% formed in island arc, 42% in continental arc, 20% in backarc, and 27% in post-collisional settings. Of the 69 porphyry and porphyry-related deposits, 7% developed in intra-oceanic arc, 41% in continental arc, 27% in backarc, and 25% in post-collisional settings. The largest occur in either compressional continental arc (18 deposits including the Reko Diq and Sar Cheshmeh giants) or post-collisional (13 deposits including the Kadjaran and Sungun giants) environments. Ninety percent of the largest porphyry or porphyry-related deposits occur in only 9 of the 26 permissive porphyry tracts or sub-tracts. Moreover, 88, 90, and 77% of the identified Cu, Mo, and Au resources are contained in porphyry deposits that occur in only 4 of these 9 tracts. Of these 4 tracts, 3 outline arc settings, and one delimits a post-collisional environment. The compositional diversity of porphyry intrusions in these tectono-magmatic environments generally varies from island arc settings with the most restricted range (partly alkaline but mainly calc-alkaline dioritic to granodioritic-tonalitic), to continental arc (calc-alkaline dioritic-quartz dioritic, granodioritic, quartz monzonitic-granitic, and less commonly mildly alkaline), to backarc (mildly alkaline and calc-alkaline dioritic to granitic), to post-collisional settings with the most expansive range (alkaline and calc-alkaline mafic to felsic, and weakly peraluminous). Metal associations also vary broadly as a function of porphyry intrusion composition from weakly peraluminous to metaluminous felsic (Mo[±W ± Cu]; <2% of porphyry-related systems [i.e., Tyrnyauz]), to metaluminous felsic and intermediate (Cu-Mo[±Au]; 85% [i.e., Cevizlidere, Haft Cheshmeh, Kahang, Sar Cheshmeh, Sungun, Teghout, Reko Diq, Saindak]), to mildly alkaline felsic and intermediate (Cu-Au[±Mo] [i.e., Agarak, Kadjaran, Kale Kafi]) and mafic (Au-Cu; 12% [i.e., Çöpler]), and to alkaline felsic (Au-Mo; 1% of porphyry-related systems [i.e., Kişladağ). Tectonic changes were critical in triggering the formation of large porphyry deposits in the region. Large porphyry deposits were preferentially emplaced in continental arc settings shortly before major collisional events (Dar Alu, Kahang, Meiduk, Now Chun, and the giant Sar Cheshmeh and Reko Diq deposits), or in post-subduction environments shortly after collision (Bakirçay, Güzelyayla, Haft Cheshmeh, Masjed Daghi, and the giant Kadjaran and Sungun deposits) or during periods of prominent extension (Aği Daği, Halilağa, Kişladağ, Sari Gunay, and Zarshuran porphyry-related deposits). Collision-induced uplift, erosion, and removal of coeval volcanic rocks favorably exposed the hypabyssal level of subduction-related porphyry deposits. Extensional structures that developed parallel and orthogonal to the compressional principal stress component along transtensional or transpressional strike-slip faults or in pull-apart basins commonly controlled porphyry-related deposits in post-collisional settings. The latter deposits typically exhibit shallow epithermal levels of emplacement because of preservation by burial. Seventeen porphyry deposits and one porphyry-related deposit in the study region are reported to contain significant supergene resources. Relatively mature levels of secondary copper enrichment in dominantly granodioritic to granitic porphyry deposits occur in areas where large pyrite-rich quartz-sericite alteration zones have been preserved and exposed to surface oxidation (Güzelyayla and Ulutaş in northeastern Turkey; Agarak, Ankavan, Dastakert, Kadjaran, and Teghout in Armenia; Ali Javad in northern Iran; Kale Kafi in central Iran; Darreh Zar, Meiduk, Now Chun, and Sar Cheshmeh in southeastern Iran; and Tanjeel in southwestern Pakistan). Chalcocite blankets also developed over porphyry deposits in regions where significant post-mineral faulting has occurred (Muratdere and Sarıçayıryayla in western Turkey). Normal faulting also enhanced secondary enrichment of gold in the Halilağa porphyry and Sary Gunay porphyry-related deposits located respectively in western Turkey and northern Iran. Evaluation of provincial as well as local controls strongly suggests that continued exploration in the region will lead to the identification of additional porphyry and porphyry-related deposits. These deposits will likely be found under younger cover formations in porphyry belts that are already known, and in association with superjacent high- and intermediate-sulfidation epithermal deposits, or increasingly peripheral skarn, carbonate-replacement, and sediment-hosted deposits. Application of suitable exploration techniques to detect concealed and/or deformed deposits in porphyry belts that remain under-explored may also prove productive.

Tethys region↗

USGS2018

An experimental comparison of composite and grab sampling of stream water for metagenetic analysis of environmental DNA

Use of environmental DNA (eDNA) to assess distributions of aquatic and semi-aquatic macroorganisms is promising, but sampling schemes may need to be tailored to specific objectives. Given the potentially high variance in aquatic eDNA among replicate grab samples, compositing smaller water volumes collected over a period of time may be more effective for some applications. In this study, we compared eDNA profiles from composite water samples aggregated over three hours with grab water samples. Both sampling patterns were performed with identical autosamplers paired at two different sites in a headwater stream environment, augmented with exogenous fish eDNA from an upstream rearing facility. Samples were filtered through 0.8 μm cellulose nitrate filters and DNA was extracted with a cetyl trimethylammonium bromide procedure. Eukaryotic and bacterial community profiles were derived by amplicon sequencing of 12S ribosomal, 16S ribosomal, and cytochrome oxidase I loci. Operational taxa were assigned to genus with a lowest common ancestor approach for eukaryotes and to family with the RDP Classifier software for prokaryotes. Eukaryotic community profiles were more consistent with composite sampling than grab sampling. Downstream, rarefaction curves suggested faster taxon accumulation for composite samples, and estimated richness was higher for composite samples as a set than for grab samples. Upstream, composite sampling produced lower estimated richness than grab samples, but with overlapping standard errors. Furthermore, a bimodal pattern of richness as a function of sequence counts suggested the impact of clumped particles on upstream samples. Bacterial profiles were insensitive to sample method, consistent with the more even dispersion expected for bacteria compared with eukaryotic eDNA. Overall, samples composited over 3 h performed equal to or better than triplicate grab sampling for quantitative community metrics, despite the higher total sequencing effort provided to grab replicates. On the other hand, taxon-specific detection rates did not differ appreciably and the two methods gave similar estimates of the ratio of the common fish genera Salmo and Coregonus at each site. Unexpectedly, Salmo eDNA dropped out substantially faster than Coregonus eDNA between the two sites regardless of sampling method, suggesting that differential settling affects the estimation of relative abundance. We identified bacterial patterns that were associated with eukaryotic diversity, suggesting potential roles as biomarkers of sample representativeness.

PeerJ↗

USGS2024

Global survey of paleo-bedforms on Mars

Sedimentary processes on Mars have contributed to a plethora of landforms, both ancient and modern. Many of these are aeolian- or fluvial-formed constructs that meet the morphologic criteria for dunes and ripples but are clearly lithified and part of the rock record. This study conducted a survey of Mars using data returned from the High Resolution Imaging Science Experiment (HiRISE) to characterize the spatial distribution, origin, and geologic context of these preserved ancient bedforms, termed here as paleo-bedforms. The most compelling class include organized groups of 2–80-m-tall, crescentic to transverse features spaced at 100–1000 m wavelengths at Apollinaris Sulci, Valles Marineris, and other low-latitude sites. These morphologies along with superposed craters, boulders, and fractures led to the interpretation that these are highly lithified, friable, and partially eroded ancient aeolian dunes. In addition to lithified dunes, other remnants of ancient bedforms include examples in which the dune was completely removed, leaving a shallow depression in a crescentic outline as dune cast pits. The most widespread occurrences of paleo-bedforms show crest-to-crest wavelengths (10–80 m), heights (∼1–4 m), and morphologies consistent with lower-order bedforms of megaripples or transverse aeolian ridges. Paleo-megaripple fields in Arcadia Planitia, Hellas Planitia, Terra Sirenum, and other locations exhibit a progression of degraded morphologies, with crests showing signs of rounding, pitting, or fracturing, while heights and slopes are diminished due to erosion. Most rare are the paleo-bedforms in the fluvial bedform class at Lethe Vallis and Holden crater, as they occur along the path of proposed ancient flooding events. More enigmatic paleo-bedform candidates occur concentrated along the steep Valles Marineris and Noctis Labyrinthus wall slopes. These intermediate-sized, arcuate landforms that resemble transverse climbing dunes are heavily cratered, but they may align perpendicular or oblique to the local gradient, perhaps formed by wall slope winds and slope creep. The bedforms are unlike most ancient terrestrial aeolian or fluvial bedform systems, which are typically preserved only as truncated members of stratigraphic sections. Episodes of burial and exhumation by various geologic units (e.g., the Medusae Fossae Formation, pyroclastic units, lava flows, dust) are notable, whereas other bedforms appear to have been stabilized and partially lithified in place without burial. Ongoing agents of mass wasting, aeolian abrasion, and cryo-driven processes have contributed to the exhumation, erosion, and weathered appearance of paleo-bedforms, and a spectrum of degradation states was observed. Collectively, we report a diverse variety of ancient sedimentary bedforms preserved across Mars, with implications about paleoclimates and landscape evolution on Mars.

Geomorphology↗

USGS1994

Ground Water Atlas of the United States: Segment 7, Idaho, Oregon, Washington

The States of Idaho, Oregon, and Washington, which total 248,730 square miles, compose Segment 7 of this Atlas. The area is geologically and topographically diverse and contains a wealth of scenic beauty, natural resources, and ground and surface water that generally are suitable for all uses. Most of the area of Segment 7 is drained by the Columbia River, its tributaries, and other streams that discharge to the Pacific Ocean. Exceptions are those streams that flow to closed basins in southeastern Oregon and northern Nevada and to the Great Salt Lake in northern Utah. The Columbia River is one of the largest rivers in the Nation. The downstream reach of the Columbia River forms most of the border between Oregon and Washington. In 1990, Idaho, Oregon, and Washington had populations of 1.0 million, 2.8 million, and 4.9 million, respectively. The more densely populated parts are in lowland areas and stream valleys. Many of the mountains, the deserts, and the upland areas of Idaho, Oregon, and Washington lack major population centers. Large areas of Idaho and Oregon are uninhabited and are mostly public land (fig. 1) where extensive ground-water development is restricted. Surface water is abundant in Idaho, Oregon, and Washington, though not always available when and where needed. In some places, surface water provides much of the water used for public-supply, domestic and commercial, agricultural (primarily irrigation and livestock watering), and industrial purposes. In arid parts of Segment 7, however, surface water has long been fully appropriated, chiefly for irrigation. Ground water is used when and where surface-water supplies are lacking. Ground water is commonly available to shallow wells that are completed in unconsolidated-deposit aquifers that consist primarily of sand and gravel but contain variable quantities of clay and silt. Many large-yield public-supply and irrigation wells and thousands of domestic wells are completed in these types of aquifers, generally in areas of privately owned land (fig. 1). In many places, deeper wells produce water from underlying volcanic rocks, usually basalt. Most irrigation (fig. 2) is on lowlands next to streams and on adjacent terraces. Generally, lowlands within a few miles of a main stream are irrigated with surface water diverted by gravity flow from the main stream or a reservoir and distributed through a system of canals and ditches. In some areas, water is pumped to irrigate lands farther from the stream at a higher altitude. Along the Snake and Columbia Rivers, large pumping systems withdraw billions of gallons of water per day from the rivers to irrigate adjacent uplands that are more than 500 feet higher than the rivers. Elsewhere, irrigation water is obtained from large-capacity wells, where depth to water might exceed 500 feet below land surface. Aquifers in Idaho, Oregon, and Washington, as in most other States, differ considerably in thickness and permeability, and well yields differ accordingly. Ground-water levels in a few areas have declined as a result of withdrawals by wells. State governments have taken steps to alleviate declines in some areas by enacting programs that either limit the number of additional wells that can be completed in a particular aquifer (Ground-Water Management Area) or prevent further ground-water development (Critical Ground-Water Area). Segment 7 includes some of the driest parts of the Nation, as well as some of the wettest. Average annual precipitation (1951-80) ranges from less than 10 inches in arid parts of Idaho, Oregon, and Washington to more than 80 inches in the western parts of Oregon and Washington (fig. 3). Most storms generally move eastward through the area. The eastward-moving air absorbs the moisture that evaporates from the Pacific Ocean. As this air encounters the fronts of mountain ranges, it rises, cools, and condenses. Accordingly, the western sides of the mountain ranges receive the most precipitation. Much of the annual precipitation moves directly to streams as overland runoff. Some of the precipitation is returned to the atmosphere by evapotranspiration, which is the combination of evaporation from the surface and transpiration from the plants. A small part of the precipitation infiltrates the soil and percolates downward to recharge underlying aquifers. Average annual runoff ( 1951-80) in the segment varies considerably (fig. 4), and the distribution of the runoff generally parallels that of precipitation. In the arid and the semiarid parts of Segment 7, most precipitation replenishes soil moisture, evaporates, or is transpired by vegetation. Little is left to maintain streamflow or to recharge aquifers. In the wetter parts, much of the precipitation runs off the land surface to maintain streamflow, and because evaporation is usually less in wetter areas, more water is available to recharge aquifers. Precipitation that falls as snow generally does not become runoff until spring thaws begin. Reservoirs constructed on major streams to mitigate flooding and to store water for irrigation, hydroelectric-power generation, and recreation also affect the timing of runoff. The runoff is stored and subsequently released during drier periods to maintain downstream flow.

Idaho, Oregon, Washington↗

USGS2024

Distribution, abundance, and breeding activities of the Least Bell's Vireo at Marine Corps Base Camp Pendleton, California—2020 annual report

Executive Summary The purpose of this report is to provide the Marine Corps with an annual summary of abundance, breeding activity, demography, and habitat use of endangered Least Bell’s Vireos ( Vireo bellii pusillus ) at Marine Corps Base Camp Pendleton (MCBCP, or Base). Surveys for the Least Bell's Vireo were conducted at MCBCP, California, between April 1 and July 10, 2020. Core survey areas and a subset of non-core areas in drainages containing riparian habitat suitable for vireos were surveyed 3–4 times. We detected 669 territorial male vireos and 16 transient vireos in core survey areas. An additional 156 territorial male vireos were detected in non-core survey areas. Territorial vireos were detected on all 10 drainages/sites surveyed (core and non-core areas). Of the vireo territories in core areas, 88 percent were on the 4 most populated drainages, with the Santa Margarita River containing 69 percent of all territories. In core areas, 79 percent of male vireos were confirmed as paired; 83 percent of male vireos in non-core areas were confirmed as paired. The number of documented Least Bell’s Vireo territories in core survey areas on MCBCP (669) increased 39 percent from 2019 to 2020. The number of territories in all core survey area drainages increased by one or more between 2019 and 2020. The substantial increase in vireo numbers on MCBCP (39 percent) was consistent with population changes in surrounding areas, including the lower San Luis Rey River (26 percent), Marine Corps Air Station, Camp Pendleton (58 percent), and the middle San Luis Rey River (7 percent). Most core-area vireo territories (69 percent of males) occurred in willow ( Salix spp.) riparian habitat. An additional 4 percent of birds occupied willow habitat co-dominated by Western sycamores ( Platanus racemosa ) or Fremont cottonwoods ( Populus fremontii ). Eighteen percent of territories were found in riparian scrub dominated by mule fat ( Baccharis salicifolia ) or sandbar willow ( S. exigua ). Upland scrub was used by 7 percent or fewer vireos; 1 percent of territories occurred in non-native vegetation, and less than 1 percent of vireo territories occurred in habitat co-dominated by coast live oak ( Quercus agrifolia ) and sycamore. In 2019, MCBCP began operating an artificial seep along the Santa Margarita River. The artificial seep pumped water to the surface from March through August each year during daylight hours and was designed to increase the amount of surface water present to enhance Southwestern Willow Flycatcher ( Empidonax traillii extimus ; flycatcher) breeding habitat. Although this enhancement was designed to benefit flycatchers, few flycatchers have inhabited the seep and proposed seep areas within the past several years. Therefore, vireos were selected as a surrogate species to determine effects of the habitat enhancement. This report presents preliminary analyses of vireo and vegetation response to the existing artificial seep. We sampled vegetation in the Seep site and three Reference sites to determine the effects of a new water diversion dam that was completed in 2019 and a surface water enhancement seep pump installed along the Santa Margarita River. We found minor differences in non-native vegetation cover between Reference sites and the Seep site. However, soil moisture was higher at the Reference sites compared to the Seep site. The effect of the seep pump may have been masked by high precipitation in the bio-year (July 1‒June 30) before 2020, limited time for the water diversion to have an effect, well-draining soil, and the non-operation of two to three of the six seep outlets. We color banded and resighted color banded Least Bell’s Vireos to evaluate adult site fidelity, between-year movement, and the effect of surface water enhancement on vireo site fidelity and between-year movement. We banded 146 Least Bell's Vireos for the first time during the 2020 season. Birds banded included 27 adult vireos and 119 juvenile vireos. All adult vireos were banded with unique color combinations. The juvenile vireos (all nestlings) were banded with a single gold numbered federal band on the left leg. We resighted and identified 85 Least Bell's Vireos banded before the 2020 breeding season on Base in 2020. Of the 85, 13 vireos were originally banded on the San Luis Rey River, 2 were banded in Baja California Sur, 1 was banded at Marine Corps Air Station, Camp Pendleton, and the remaining birds were banded at MCBCP. Adult birds of known age ranged from 1 to 8 years old. Most returning adult vireos showed strong between-year site fidelity. Of the adults present in 2019 and 2020, 74 percent, (79 percent of males; 40 percent of females) returned to within 100 m of their previous territory. The average between-year movement for returning adult vireos was 0.3 plus or minus (±) 0.8 kilometer (km). The average movement of first-year vireos detected in 2020 that fledged from a known nest on MCBCP in 2019 was 4.7±7.0 km. One first-year vireo that originated at MCBCP moved off Base and was detected at Murrieta Creek, 23.0 km from his natal territory. We monitored Least Bell's Vireo pairs to evaluate the effects of surface water enhancement on nest success and breeding productivity. Vireos were monitored at one Seep site and three Reference sites. Base personnel plan to install a second seep pump at one of the Reference sites in the future, at which time the status of the monitoring site will change from Reference to Seep. Nesting activity was monitored between March 31 and July 28 in 52 territories within the Seep and Reference sites (12 at the Seep site and 40 at Reference sites). All territories were occupied by pairs, and all but one territory was fully monitored, meaning all nesting attempts were monitored at these territories. One vireo territory within a Reference site was partially monitored. During the monitoring period, 94 nests (25 in the Seep site and 69 in Reference sites) were monitored. Breeding productivity was similar at the Seep site and Reference sites (3.7 and 2.9 young per pair, respectively), with 75 percent of Seep pairs and 79 percent of Reference pairs successfully fledging at least 1 young in 2020. Compared to Reference sites, the Seep site had a higher proportion of all eggs that hatched and also a higher proportion of nests with eggs that hatched. Conversely, a lower proportion of hatchlings and nests that had hatchlings fledged at the Seep site than at Reference sites. According to the best model, nest survival in 2020 was not affected by treatment (Seep versus Reference), although the second best model that included treatment was also well supported. Completed nests at the Seep site were likely to be as successful as nests at Reference sites in 2020 (57 percent and 59 percent, respectively). Predation was believed to be the primary source of nest failure at both sites. Predation accounted for 90 percent and 73 percent of nest failures at Seep and Reference sites, respectively. Failure of the remaining eight nests was attributed to the collapse of the nesting substrate, exposure to rain and flooding, and other unknown reasons. Fourteen plant species were used as hosts for vireo nests in 2020. In 2020, we found that at the Seep site, successful nests were placed in taller host plants and further from the edge of host plants (closer to the center) than unsuccessful nests. We found no difference in nest placement between the Seep site and the Reference sites.

California↗

USGS2026

Salinas Valley integrated hydrologic and reservoir operations models, Monterey and San Luis Obispo Counties, California

The area surrounding the Salinas Valley groundwater basin in Monterey and San Luis Obispo Counties of California is a highly productive agricultural area, contributes substantially to the local economy, and provides a substantial portion of vegetables and other agricultural commodities to the Nation. This region of California provides about half of the Nation’s lettuce, celery, broccoli, and spinach each year. Thus, this agricultural area provides substantial volumes of agricultural products not just for California but for the United States. Changes in population and increased agricultural development, which includes a shift toward more water-intensive crops, and climate variability, have put increasing demand on both surface-water and groundwater resources in the valley. This situation has resulted in water management challenges in the Salinas Valley that generally relate to the distribution of the water supply throughout the basin. Where and when the water is present in the surface and subsurface does not coincide with where and when the water is needed. Historically, to deal with the distribution issue, water has been used conjunctively in the valley. Conjunctive use is a water management strategy that coordinates surface-water and groundwater use to maximize water availability. Groundwater is used throughout the Salinas Valley to meet water demands when surface-water supplies are insufficient. The availability of surface water is constrained by climate. Precipitation and streamflow vary seasonally and year to year. Although there are two reservoirs in the Salinas Valley to capture and store water during wet periods, the only conveyance of reservoir water to coastal agricultural areas is the Salinas River. Increasing demand for groundwater and surface-water resources throughout the Salinas Valley has resulted in undesirable effects from unsustainable water use, such as surface-water depletion, groundwater-level declines, storage depletion in the principal aquifers, and seawater intrusion. To address these escalating issues, local communities, water management agencies, and groundwater sustainability agencies are evaluating how to sustainably manage both their surface-water and groundwater resources. To meet water demands and reduce the undesirable effects of unsustainable water use, continued conjunctive management of surface water and groundwater would ideally incorporate strategies to deal with increases in demand and climate variability. To evaluate the challenging water management issues in the Salinas Valley, the U.S. Geological Survey, Monterey County Water Resources Agency, and the Salinas Valley Basin Groundwater Sustainability Agency developed a comprehensive suite of models that represent the Salinas Valley hydrogeologic system called the Salinas Valley System Model. The geologic framework is known as the Salinas Valley Geologic Framework and was developed to characterize the subsurface using various topographic and geologic data sources, including information on hydrogeologic units, their surfaces and extents, geologic structures, lithology, and elevations from borehole data and cross sections, as well as details on faults and existing models. The surface-water model is called the Salinas Valley Watershed Model and simulates the Salinas River watershed. Monthly surface-water inflows into the integrated hydrologic model domain were simulated using the Salinas Valley Watershed Model. The historical model uses historical climate data, water and land use data, and reservoir releases to simulate agricultural operations, including landscape water demands, diversions, and reclaimed wastewater. The operational model adds an embedded reservoir operations framework to the simulation of the historical model that allows specified operational rules to simulate reservoir releases and changes in reservoir storage. The operational model assumes current reservoir operations and constant land use, which differs from historical conditions. Thus, the operational model is a hypothetical baseline model that can be used by local water managers to evaluate and quantify potential benefits of water supply projects. Together, the geologic framework, watershed, historical, and operational models form a tool that can be used to simulate irrigated agriculture and associated reservoir operations of the integrated hydrologic system of the Salinas Valley.

California↗

USGS1988

Conservation of North American rallids

The Rallidae are a diverse group in their habitat selection, yet most North American species occur in or near wetlands As a consequence, most species are subject to habitat enhancement or perturbation from waterfowl management programs. The overall effects of these management programs relative to rallid conservation have been assessed for few species, and there is a need for synthesis of such information. In the cases of some species or raves, population status is not known, and suggested directions for conservation and management are needed. Rare, endangered, or status undetermined species or races often occur in areas where related species are classified as game birds, and the effects of such hunting on rarer forms are not known. Their generally secretive nature, the endangered status of several races and populations, and continued loss of habitat and threats to present habitat, warrant an examination of the conservation status of the North American taxa in this group. In 1977, a committee of the International Association of Fish and Wildlife Agencies summarized available information on management and biology of American Coots ( Fulica americana ), rails, and gallinules in North America (Holliman 1977). That summary was intended to provide relatively complete information on conservation of these species, and also to provide guidance for research within the U.S. Fish and Wildlife Service's (FWS) Accelerated Research Program for Webless Migratory Shore and Upland Game Birds (ARP). Subsequently, a number of rallid studies were funded under this program. The program was eliminated in 1982, following substantial research activities on North American rallids. Since the demise of the ARP, additional research on rallids in North America has focused on an area the International Association of Fish and Wildlife Agencies report failed to cover in detail--that of endangered rallids in the U.S. and their possessions. Most of these studies have been of threatened and endangered taxa in western coastal marshes. This report updates and summarizes information on North American rallids since the ARP report and identifies the major conservation problems of this group with the intent of focusing future efforts on these priority issues. Consideration of island forms occurring within U.S. possessions is beyond the scope of this report, mainly because of the special conservation problems associated with their insular distribution. The major topics include habitat requirements, effects of habitat and hunting management techniques currently practiced on wetland areas, and conservation of endangered and threatened populations. Research needs are identified. Habitats of the American Coot are similar to those of several waterfowl species, and the biology of coots is considered only as it is typical of rails in general.

The Wilson Bulletin↗

USGS2024

Distribution, abundance, and breeding activities of the Least Bell's Vireo at Marine Corps Base Camp Pendleton, California—2021 annual report

Executive Summary The purpose of this report is to provide the Marine Corps with an annual summary of abundance, breeding activity, demography, and habitat use of endangered Least Bell’s Vireos ( Vireo bellii pusillus ) at Marine Corps Base Camp Pendleton (MCBCP or “Base”). Surveys for the Least Bell's Vireo were completed at MCBCP, California, between April 5 and July 13, 2021. Core survey areas and a subset of non-core areas in drainages containing riparian habitat suitable for vireos were surveyed three to four times. We detected 551 territorial male vireos and 26 transient vireos in core survey areas. An additional 98 territorial male vireos were detected in non-core survey areas. Transient vireos were detected on 8 of the 10 drainages/sites surveyed (core and non-core areas). Of the vireo territories in core areas, 89 percent were on the four most populated drainages, with the Santa Margarita River containing 70 percent of all territories in areas surveyed on Base. In core areas, 75 percent of male vireos were confirmed as paired; 76 percent of male vireos in non-core areas were confirmed as paired. The number of documented Least Bell’s Vireo territories in core survey areas on MCBCP decreased 18 percent from 2020 to 2021. The number of territories in all but two core survey area drainages decreased by one or more between 2020 and 2021. The decrease in vireo numbers on MCBCP (18 percent) was consistent with population changes in surrounding areas, including the lower San Luis Rey River (24-percent decrease) and the middle San Luis Rey River (6-percent decrease). Most core-area vireo territories (59 percent of males) were in willow ( Salix spp.) riparian habitat. An additional 7 percent of birds occupied willow habitat co-dominated by Western sycamores ( Platanus racemosa ) or Fremont cottonwoods ( Populus fremontii ). Of all the territories surveyed, 25 percent were in riparian scrub dominated by mule fat ( Baccharis salicifolia ) or sandbar willow ( S. exigua ). Upland scrub was used by 8 percent of vireos; 1 percent of vireo territories were in non-native vegetation, and less than 1 percent of vireo territories were in alder or drier habitats co-dominated by coast live oak ( Quercus agrifolia ) and sycamore. In 2019, MCBCP began operating an artificial seep along the Santa Margarita River; then, in 2021, two additional artificial seeps became operational. The artificial seeps pumped water to the surface starting in March and ending in August each year during daylight hours and were designed to increase the amount of surface water present to enhance Southwestern Willow Flycatcher ( Empidonax traillii extimus ) breeding habitat. Although this enhancement was designed to benefit flycatchers, few flycatchers have inhabited the seep areas within the past several years; therefore, vireos were selected as a surrogate species to determine effects of the habitat enhancement. This report presents the second year of analyses of vireo and vegetation response to the artificial seeps. We sampled vegetation in two Seep sites and two Reference sites to determine the effects of a new water diversion dam that was completed in 2019 and two seep pumps that were installed to enhance surface water along the Santa Margarita River in 2019 and 2021. We measured higher total vegetation cover below 2 meters (m) at Seep sites than at Reference sites and lower total vegetation cover above 5 m at Seep sites than at Reference sites. Native herbaceous cover was also higher below 4 m at Seep sites than at Reference sites. Woody cover was lower above 5 m at Seep sites than at Reference sites. Soil moisture did not differ between Seep and Reference sites. The U.S. Geological Survey has been color banding Least Bell’s Vireos on Marine Corps Base Camp Pendleton since 1995. In 2021, we continued to color band and resight color banded Least Bell’s Vireos to evaluate adult site fidelity, between-year movement, and the effect of surface-water enhancement on vireo site fidelity and between-year movement. We banded 164 Least Bell's Vireos for the first time during the 2021 season. Birds banded included 3 adult vireos and 161 juvenile vireos. All adult vireos were banded with unique color combinations. The juvenile vireos (all nestlings) were banded with a single gold numbered federal band on the right leg. There were 52 Least Bell's Vireos banded before the 2021 breeding season that were resighted and identified on Base in 2021. Of these vireos, 45 were banded on Base, 6 were originally banded on the San Luis Rey River, and 1 was banded at Marine Corps Air Station, Camp Pendleton. Adult birds of known age ranged from 1 to at least 7 years old. Base-wide survival of vireos was affected by sex, age, and year. Males had a slightly but significantly higher survival rate than females. Adults had a higher survival rate than first-year vireos. Survival of both adults and first-year birds was high from 2007 to 2008 and from 2012 to 2013 and low from 2020 to 2021. The return rate of adult vireos to Seep or Reference sites ranged from 45 to 57 percent. Most returning adult vireos showed strong between-year site fidelity. Of the adults present in 2020 and 2021, 84 percent (94 percent of males; no females) returned to within 100 m of their previous territory. The average between-year movement for returning adult vireos was 0.1±0.2 kilometer (km). The average movement of first-year vireos detected in 2021 that fledged from a known nest on MCBCP in 2020 was 1.1±0.7 km. We monitored Least Bell's Vireo pairs to evaluate the effects of surface-water enhancement on nest success and breeding productivity. Vireos were monitored at two Seep sites and two Reference sites. Early in 2021, a seep was installed in a 2020 Reference site, which changed the status of this monitoring site from Reference to Seep. Nesting activity was monitored between April 5 and July 22 in 50 territories within the Seep and Reference sites (25 at Seep sites and 25 at Reference sites). All territories, except one, were occupied by pairs and all were fully monitored, meaning all nesting attempts were monitored at these territories. During the monitoring period, 97 nests (42 in Seep sites and 55 in Reference sites) were monitored. Breeding productivity was similar at the Seep site and Reference sites (3.6 and 3.4 young per pair, respectively), with 84 percent of Seep pairs and 88 percent of Reference pairs successfully fledging at least one young in 2021. Seep sites had a higher proportion of all eggs that hatched and also a higher proportion of nests with eggs that hatched than Reference sites. Seep sites and References sites had similar proportions of hatchlings that fledged and nests with hatchlings that fledged. According to the best model, daily nest survival in 2021 was higher in Seep sites than in Reference sites. Completed nests at the Seep site were more likely to be successful than nests at Reference sites in 2021. At Seep sites, 75 percent of nests fledged young, whereas 53 percent of nests at Reference successfully fledged young. Vireos at Reference sites had to expend more energy in extra nest-building and egg-laying to produce a similar number of young as vireos at Seep sites. Predation was believed to be the primary source of nest failure at both sites. Predation accounted for 100 percent and 83 percent of nest failures at Seep and Reference sites, respectively. Failure of the remaining nests was attributed to infertile eggs and other unknown causes. There were 11 plant species used as hosts for vireo nests in 2021. Successful vireo nests at Reference sites were further from the edge of host plants (closer to the center) and further from the edge of the nest plant clump than unsuccessful nests. Vireo nests at Seep sites were further from the edge of the host plant and the nest plant clump than vireo nests at Reference sites.

California↗

USGS2012

Ecosystem engineering varies spatially: a test of the vegetation modification paradigm for prairie dogs

Colonial, burrowing herbivores can be engineers of grassland and shrubland ecosystems worldwide. Spatial variation in landscapes suggests caution when extrapolating single-place studies of single species, but lack of data and the need to generalize often leads to ‘model system’ thinking and application of results beyond appropriate statistical inference. Generalizations about the engineering effects of prairie dogs ( Cynomys sp.) developed largely from intensive study at a single complex of black-tailed prairie dogs C. ludovicianus in northern mixed prairie, but have been extrapolated to other ecoregions and prairie dog species in North America, and other colonial, burrowing herbivores. We tested the paradigm that prairie dogs decrease vegetation volume and the cover of grasses and tall shrubs, and increase bare ground and forb cover. We sampled vegetation on and off 279 colonies at 13 complexes of 3 prairie dog species widely distributed across 5 ecoregions in North America. The paradigm was generally supported at 7 black-tailed prairie dog complexes in northern mixed prairie, where vegetation volume, grass cover, and tall shrub cover were lower, and bare ground and forb cover were higher, on colonies than at paired off-colony sites. Outside the northern mixed prairie, all 3 prairie dog species consistently reduced vegetation volume, but their effects on cover of plant functional groups varied with prairie dog species and the grazing tolerance of dominant perennial grasses. White-tailed prairie dogs C. leucurus in sagebrush steppe did not reduce shrub cover, whereas black-tailed prairie dogs suppressed shrub cover at all complexes with tall shrubs in the surrounding habitat matrix. Black-tailed prairie dogs in shortgrass steppe and Gunnison's prairie dogs C. gunnisoni in Colorado Plateau grassland both had relatively minor effects on grass cover, which may reflect the dominance of grazing-tolerant shortgrasses at both complexes. Variation in modification of vegetation structure may be understood in terms of the responses of different dominant perennial grasses to intense defoliation and differences in foraging behavior among prairie dog species. Spatial variation in the engineering role of prairie dogs suggests spatial variation in their keystone role, and spatial variation in the roles of other ecosystem engineers. Thus, ecosystem engineering can have a spatial component not evident from single-place studies.

Ecography: Pattern and Diversity in Ecology↗

USGS2006

Hydrology and water quality in the Green River and surrounding agricultural areas near Green River in Emery and Grand Counties, Utah, 2004-05

Water from the Colorado River and its tributaries is used for municipal and industrial purposes by about 27 million people and irrigates nearly 4 million acres of land in the Western United States. Water users in the Upper Colorado River Basin consume water from the Colorado River and its tributaries, reducing the amount of water in the river. In addition, application of water to agricultural land within the basin in excess of crop needs can increase the transport of dissolved solids to the river. As a result, dissolved-solids concentrations in the Colorado River have increased, affecting downstream water users. During 2004-05, the U.S. Geological Survey, in cooperation with the Natural Resources Conservation Service, investigated the occurrence and distribution of dissolved solids in water from the agricultural areas near Green River, Utah, and in the adjacent reach of the Green River, a principle tributary of the Colorado River. The flow-weighted concentration of dissolved solids diverted from the Green River for irrigation during 2004 and 2005 was 357 milligrams per liter and the mean concentration of water collected from seeps and drains where water was returning to the river during low-flow conditions was 4,170 milligrams per liter. The dissolved-solids concentration in water from the shallow part of the ground-water system ranged from 687 to 55,900 milligrams per liter. Measurable amounts of dissolved solids discharging to the Green River are present almost exclusively along the river banks or near the mouths of dry washes that bisect the agricultural areas. The median dissolved-solids load in discharge from the 17 drains and seeps visited during the study was 0.35 ton per day. Seasonal estimates of the dissolved-solids load discharging from the study area ranged from 2,800 tons in the winter to 6,400 tons in the spring. The estimate of dissolved solids discharging from the study area annually is 15,700 tons. Water samples collected from selected sites within the Green River agricultural areas were analyzed for naturally occurring isotopes of strontium and boron, which can be useful for differentiating dissolved-solids sources. Substantial variations in the delta strontium-87 and delta boron-11 values among the sites were measured. Canal and river samples had relatively low concentrations of strontium and the most positive (heavier) isotopic ratios, while drains and seeps had a wide range of strontium concentrations and isotopic ratios that generally were less positive (lighter). Further study of the variation in strontium and boron concentrations and isotope ratios may provide a means to distinguish end members and discern processes affecting dissolved solids within the Green River study area; however, the results from isotope data collected during this study are inconclusive. Flow and seepage losses were estimated for the three main canals in the study area for May 2 to October 4 in any given year. This period coincides with the frost-free period in the Green River area. Estimated diversion from the Green River into the Thayn, East Side, and Green River Canals is 6,600, 6,070, and 19,900 acre-feet, respectively. The estimated seepage loss to ground water from the Thayn, East Side, and Green River Canals during the same period is 1,550, 1,460, and 4,710 acre-feet, respectively.

Utah↗

USGS2018

A 30-m landsat-derived cropland extent product of Australia and China using random forest machine learning algorithm on Google Earth Engine cloud computing platform

Mapping high resolution (30-m or better) cropland extent over very large areas such as continents or large countries or regions accurately, precisely, repeatedly, and rapidly is of great importance for addressing the global food and water security challenges. Such cropland extent products capture individual farm fields, small or large, and are crucial for developing accurate higher-level cropland products such as cropping intensities, crop types, crop watering methods (irrigated or rainfed), crop productivity, and crop water productivity. It also brings many challenges that include handling massively large data volumes, computing power, and collecting resource intensive reference training and validation data over complex geographic and political boundaries. Thereby, this study developed a precise and accurate Landsat 30-m derived cropland extent product for two very important, distinct, diverse, and large countries: Australia and China. The study used of eight bands (blue, green, red, NIR, SWIR1, SWIR2, TIR1, and NDVI) of Landsat-8 every 16-day Operational Land Imager (OLI) data for the years 2013–2015. The classification was performed by using a pixel-based supervised random forest (RF) machine learning algorithm (MLA) executed on the Google Earth Engine (GEE) cloud computing platform. Each band was time-composited over 4–6 time-periods over a year using median value for various agro-ecological zones (AEZs) of Australia and China. This resulted in a 32–48-layer mega-file data-cube (MFDC) for each of the AEZs. Reference training and validation data were gathered from: (a) field visits, (b) sub-meter to 5-m very high spatial resolution imagery (VHRI) data, and (c) ancillary sources such as from the National agriculture bureaus. Croplands versus non-croplands knowledge base for training the RF algorithm were derived from MFDC using 958 reference-training samples for Australia and 2130 reference-training samples for China. The resulting 30-m cropland extent product was assessed for accuracies using independent validation samples: 900 for Australia and 1972 for China. The 30-m cropland extent product of Australia showed an overall accuracy of 97.6% with a producer’s accuracy of 98.8% (errors of omissions = 1.2%), and user’s accuracy of 79% (errors of commissions = 21%) for the cropland class. For China, overall accuracies were 94% with a producer’s accuracy of 80% (errors of omissions = 20%), and user’s accuracy of 84.2% (errors of commissions = 15.8%) for cropland class. Total cropland areas of Australia were estimated as 35.1 million hectares and 165.2 million hectares for China. These estimates were higher by 8.6% for Australia and 3.9% for China when compared with the traditionally derived national statistics. The cropland extent product further demonstrated the ability to estimate sub-national cropland areas accurately by providing an R 2 value of 0.85 when compared with province-wise cropland areas of China. The study provides a paradigm-shift on how cropland maps are produced using multi-date remote sensing. These products can be browsed at www.croplands.org and made available for download at NASA’s Land Processes Distributed Active Archive Center (LP DAAC) https://www.lpdaac.usgs.gov/node/1282 .

ISPRS Journal of Photogrammetry and Remote Sensing↗

USGS2016

Temporal trends and stationarity in annual peak flow and peak-flow timing for selected long-term streamflow-gaging stations in or near Montana through water year 2011: Chapter B in Montana StreamStats

A large-scale study by the U.S. Geological Survey, in cooperation with the Montana Department of Transportation and the Montana Department of Natural Resources and Conservation, was done to investigate general patterns in peak-flow temporal trends and stationarity through water year 2011 for 24 long-term streamflow-gaging stations (hereinafter referred to as gaging stations) in Montana. Hereinafter, all years refer to water years; a water year is the 12-month period from October 1 through September 30 and is designated by the year in which it ends. The primary focus of the study was to identify general patterns in peak-flow temporal trends and stationarity that are relevant to application of peak-flow frequency analyses within a statewide gaging-station network. Temporal trends were analyzed for two hydrologic variables: annual peak flow and peak-flow timing. Annual peak flow is the maximum instantaneous discharge, in cubic feet per second, recorded each year a gaging station was operated. Peak-flow timing is the day of the annual peak flow (hereinafter referred to as day of peak), recorded each year a gaging station was operated. Study results provide evidence that annual peak flow for most of the long-term gaging stations can be reasonably considered as stationary for application of peak-flow frequency analyses within a statewide gaging station network. Upward trends in annual peak flow during 1930–76 generally were stronger than downward trends during 1967–2011 for most long-term gaging stations. Statistical distributions of annual peak flow generally were similar among three summary time periods (1930–78, 1979–2011, and the entire period of record). However, for two low-elevation gaging stations in eastern Montana (Poplar River at international boundary [gaging station 06178000] and Powder River at Moorhead, Montana [gaging station 06324500]), substantial downward trends in annual peak flow during 1967–2011 were of similar or stronger magnitude than the upward trends during 1930–76, and the annual-peak-flow medians for 1979–2011 were substantially lower than the medians for the entire period of record. For peak-flow timing for most long-term gaging stations, differences in trends between 1930–76 and 1967–2011 are variable and not particularly strong. Statistical distributions generally are similar among the summary time periods. However, for two high-elevation gaging stations on a Missouri River headwater tributary (Gallatin River near Gallatin Gateway, Montana [gaging station 06043500] and Gallatin River at Logan, Montana [gaging station 06052500]) and for five high-elevation gaging stations in the Yellowstone River Basin (Yellowstone River at Corwin Springs, Montana [gaging station 06191500], Yellowstone River near Livingston, Montana [gaging station 06192500], Clarks Fork Yellowstone River near Belfry, Montana [gaging station 06207500], Clarks Fork Yellowstone River at Edgar, Montana [gaging station 06208500], and Yellowstone River at Billings, Montana [gaging station 06214500]) downward trends in peak-flow timing during 1967–2011 generally were stronger than upward trends during 1930–1976, and day-of-peak medians for 1979–2011 were considerably less than medians for 1930–78. The downward trends in peak-flow timing for 1967–2011 indicate that the timing of annual peak flows changed from later in the year to earlier in the year. For the seven high-elevation gaging stations, the mean change during 1967–2011 was about 13 days (range of 8 to 22 days). For most of the high-elevation gaging stations in the Missouri River headwaters, Yellowstone River Basin, and Columbia River Basin, there was general correspondence between trend patterns for annual peak flow and trend patterns for peak-flow timing; that is, during periods when there were upward trends in annual peak flow, there generally also were upward trends in peak-flow timing. Conversely, during periods when there were downward trends in annual peak flow, there generally also were downward trends in peak-flow timing. The two low-elevation gaging stations in eastern Montana (Poplar River at international boundary [gaging station 06178000] and Powder River at Moorhead, Montana [gaging station 06324500]) had considerable changes in annual-peakflow characteristics after the mid-1970s, which might provide evidence of potential nonstationarity in the peak-flow records. The two low-elevation gaging stations that have potential nonstationarity are located in drainage basins that are strongly affected by agricultural activities that potentially affect the hydrologic regimes. Primary agricultural activities that might alter natural hydrologic conditions include construction of small impoundments (primarily for stock-watering purposes) and irrigation diversions. Temporal variability in these activities might contribute to the potential nonstationarity issues. Changes in climatic characteristics after the mid-1970s also possibly contribute to the potential nonstationarity issues. Lack of considerable indication of potential nonstationarity in annual peak flow for the other long-term gaging stations in this study might indicate that climatic changes have been more pronounced with respect to effects on peak flows in low elevation areas in eastern Montana than in areas represented by the other long-term gaging stations. Another possibility is that climatic changes after the mid-1970s are exacerbated in low-elevation areas where small-impoundment development and potential effects of irrigation diversions might be more extensive.

Montana↗