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At least 1,423 records · Page 79Linked to original sources

The elusive baseline of marine disease: Are diseases in ocean ecosystems increasing?

Disease outbreaks alter the structure and function of marine ecosystems, directly affecting vertebrates (mammals, turtles, fish), invertebrates (corals, crustaceans, echinoderms), and plants (seagrasses). Previous studies suggest a recent increase in marine disease. However, lack of baseline data in most communities prevents a direct test of this hypothesis. We developed a proxy to evaluate a prediction of the increasing disease hypothesis: the proportion of scientific publications reporting disease increased in recent decades. This represents, to our knowledge, the first quantitative use of normalized trends in the literature to investigate an ecological hypothesis. We searched a literature database for reports of parasites and disease (hereafter “disease”) in nine marine taxonomic groups from 1970 to 2001. Reports, normalized for research effort, increased in turtles, corals, mammals, urchins, and molluscs. No significant trends were detected for seagrasses, decapods, or sharks/rays (though disease occurred in these groups). Counter to the prediction, disease reports decreased in fishes. Formulating effective resource management policy requires understanding the basis and timing of marine disease events. Why disease outbreaks increased in some groups but not in others should be a priority for future investigation. The increase in several groups lends urgency to understanding disease dynamics, particularly since few viable options currently exist to mitigate disease in the oceans.

PLoS Biology↗

Conservation and Ecology of Marine Forage Fishes--Proceedings of a Research Symposium, September 2012

Locally and globally, there is growing recognition of the critical roles that herring, smelt, sand lance, eulachon, and other forage fishes play in marine ecosystems. Scientific and resource management entities throughout the Salish Sea, agree that extensive information gaps exist, both in basic biological knowledge and parameters critical to fishery management. Communication and collaboration among researchers also is inadequate. Building on the interest and enthusiasm generated by recent forage fish workshops and symposia around the region, the 2012 Research Symposium on the Conservation and Ecology of Marine Forage Fishes was designed to elucidate practical recommendations for science and policy needs and actions, and spur further collaboration in support for the precautionary management of forage fish. This dynamic and productive event was a joint venture of the Northwest Straits Commission Forage Fish Program, U.S. Geological Survey (USGS), Washington Department of Fish and Wildlife (WDFW), and The Puget Sound Partnership. The symposium was held on September 12–14, 2012, at the University of Washington, Friday Harbor Laboratories campus. Sixty scientists, graduate students, and fisheries policy experts convened; showcasing ongoing research, conservation, and management efforts targeting forage fish from regional and national perspectives. The primary objectives of this event were to: (1) review current research and management related to marine forage fish species; and (2) identify priority science and policy needs and actions for Washington, British Columbia, and the entire West Coast. Given the diversity of knowledge, interests, and disciplines surrounding forage fish on both sides of the international border, the organizing committee made a concerted effort to contact many additional experts who, although unable to attend, provided valuable insights and ideas to the symposium structure and discussions. The value of the symposium format was highlighted in the closing remarks delivered by Joseph Gaydos, SeaDoc Society and Chair of the Puget Sound Science Panel. Dr. Gaydos’ presentation referenced the 2011 paper by Murray Rudd in the journal Conservation Biology , “How research-prioritization exercises affect conservation policy.” The paper points out that policy makers and funding agencies are more likely to gain a full understanding of issues when they are presented with research findings from an aligned research program. That is, compared to unaligned research strategies, where work is not based on identified research priorities.

Open-File Report↗

Water-quality, bed-sediment, and invertebrate tissue trace-element concentrations for tributaries in the Clark Fork Basin, Montana, October 2018–September 2019

Water, bed sediment, and invertebrate tissue were sampled in streams from Butte to near Missoula, Montana, as part of a monitoring program in the Clark Fork Basin. The sampling program was completed by the U.S. Geological Survey, in cooperation with the U.S. Environmental Protection Agency, to characterize aquatic resources in the Clark Fork Basin and monitor trace elements associated with historical mining and smelting activities. Sampling sites were on the river and tributaries of the Clark Fork. Water samples were collected periodically at 20 sites from October 2018 through September 2019. Bed-sediment and tissue samples were collected once at 13 sites during July 2019. Water-quality data included concentrations of major ions, dissolved organic carbon, nitrogen (nitrate plus nitrite), trace elements, and suspended sediment. Daily values of turbidity were determined at four sites. Bed-sediment data included trace-element concentrations in the fine-grained (less than 0.063 millimeter) fraction. Biological data included trace-element concentrations in whole-body tissue of aquatic benthic invertebrates. Statistical summaries of water-quality, bed-sediment, and invertebrate tissue trace-element data for sites in the Clark Fork Basin were provided for the period of record: March 1985–September 2019.

Montana↗

Ocean climate indicators: A monitoring inventory and plan for tracking climate change in the north-central California coast and ocean region

The impacts of climate change, defined as increasing atmospheric and oceanic carbon dioxide and associated increases in average global temperature and oceanic acidity, have been observed both globally and on regional scales, such as in the North-central California coast and ocean, a region that extends from Point Arena to Point Año Nuevo and includes the Pacific coastline of the San Francisco Bay Area. Because of the high economic and ecological value of the region’s marine environment, the Gulf of the Farallones National Marine Sanctuary (GFNMS) and other agencies and organizations have recognized the need to evaluate and plan for climate change impacts. Climate change indicators can be developed on global, regional, and site-specific spatial scales, and they provide information about the presence and potential impacts of climate change. While indicators exist for the nation and for the state of California as a whole, no system of ocean climate indicators exist that specifically consider the unique characteristics of the California coast and ocean region. To that end, GFNMS collaborated with over 50 regional, federal, and state natural resource managers, research scientists, and other partners to develop a set of 2 ocean climate indicators specific to this region. A smaller working group of 13 regional partners developed monitoring goals, objectives, strategies, and activities for the indicators and recommended selected species for biological indicators, resulting in the Ocean Climate Indicators Monitoring Inventory and Plan. The working group considered current knowledge of ongoing monitoring, feasibility of monitoring, costs, and logistics in selecting monitoring activities and selected species.

Report↗

Conceptual design of the Everglades Depth Estimation Network (EDEN) grid

The Everglades Depth Estimation Network (EDEN) offers a consistent and documented dataset that can be used to guide large-scale field operations, to integrate hydrologic and ecological responses, and to support biological and ecological assessments that measure ecosystem responses to the Comprehensive Everglades Restoration Plan (Telis, 2006). Ground elevation data for the greater Everglades and the digital ground elevation models derived from them form the foundation for all EDEN water depth and associated ecologic/hydrologic modeling (Jones, 2004, Jones and Price, 2007). To use EDEN water depth and duration information most effectively, it is important to be able to view and manipulate information on elevation data quality and other land cover and habitat characteristics across the Everglades region. These requirements led to the development of the geographic data layer described in this techniques and methods report. Relying on extensive experience in GIS data development, distribution, and analysis, a great deal of forethought went into the design of the geographic data layer used to index elevation and other surface characteristics for the Greater Everglades region. To allow for simplicity of design and use, the EDEN area was broken into a large number of equal-sized rectangles ('Cells') that in total are referred to here as the 'grid'. Some characteristics of this grid, such as the size of its cells, its origin, the area of Florida it is designed to represent, and individual grid cell identifiers, could not be changed once the grid database was developed. Therefore, these characteristics were selected to design as robust a grid as possible and to ensure the grid's long-term utility. It is desirable to include all pertinent information known about elevation and elevation data collection as grid attributes. Also, it is very important to allow for efficient grid post-processing, sub-setting, analysis, and distribution. This document details the conceptual design of the EDEN grid spatial parameters and cell attribute-table content.

Florida↗

Wide-ranging phylogeographic structure of invasive red lionfish in the Western Atlantic and Greater Caribbean

The red lionfish ( Pterois volitans ) is an invasive predatory marine fish that has rapidly expanded its presence in the Western Hemisphere. We collected 214 invasive red lionfish samples from nine countries and territories, including seven unpublished locations. To more comprehensively evaluate connectivity, we compiled our d-loop sequence data with 846 published sequences, resulting in 1,060 samples from 14 locations. We found low nucleotide diversity ( π = 0.003) and moderate haplotype diversity ( h = 0.59). Using haplotype population pairwise Φ ST tests, we analyzed possible phylogeographic breaks that were previously proposed based on other reef organisms. We found support for the Bahamas/Turks/Caicos versus Caribbean break ( Φ ST = 0.12) but not for the Northwestern Caribbean, Eastern Caribbean, or US East Coast versus Bahamas breaks. The Northern Region had higher variation and more haplotypes, supporting introductions of at least five haplotypes to the region. Our wide-ranging samples showed that a lower-frequency haplotype in the Northern Region dominated the Southern Region and suggested multiple introductions, possibly to the south. We tested multiple scenarios of phylogeographic structure with analyses of molecular variance and found support for a Northern and Southern Region split at the Bahamas/Turks/Caicos versus Caribbean break (percentage of variation among regions = 8.49 %). We found that Puerto Rico clustered with the Southern Region more strongly than with the Northern Region, as opposed to previous reports. We also found the rare haplotype H03 for the first time in the southern Caribbean (Panama), indicating that either secondary releases occurred or that the low-frequency haplotypes have had time to disperse to extreme southern Caribbean locations.

Marine Biology↗

On carbon sequestration in desert ecosystems

Recent reports of net ecosysytem production >100 g C m -2 yr -1 in deserts are incompatible with existing measurements of net primary production and carbon pools in deserts. The comparisions suggest that gas exchange measurements should be used with caution and better validation if they are expected to indicate the magnitude of carbon sink in these ecosysytems. ?? 2009 Blackwell Publishing.

Global Change Biology↗

Biology and invasive species in the western U.S

The diversity of environments that characterizes the West is responsible for the region's rich biological heritage. This ecological diversity also means that opportunities for invasive species are many, varied, and complex. Island ecosystems are notoriously vulnerable to invaders as demonstrated in Hawaii and West Coast offshore islands. Aquatic invaders impose high economic and environmental costs in systems as varied as San Francisco Bay and desert springs in the Great Basin. Although the West's arid and montane ecosystems may seem resistant to plant and animal invaders, we now know that ex-otic species have altered physical processes related to fire and hydrology in a manner favoring further expansion and persis-tence of invaders. Natural resource managers value analytical, mapping, and genetics tools developed by USGS scientists to monitor invasive species and help conserve biological systems. USGS biologists conduct research to assist land and water managers' efforts to control invasive species and restore natural systems. Throughout the West, the USGS carries out studies for early detection and rapid assessment of invaders. The following are some examples of how the USGS is making a difference in the western United States.

Fact Sheet↗

Calibration of a simple oilspill trajectory model using the Argo Merchant spill

An oil spill risk analysis was conducted to determine the relative envionmental hazards of developing oil in different regions of the Eastern Gulf of Mexico Outer Continental Shelf lease area. The study analyzed the probability of spill occurrence, likely paths of the spills, and locations in space and time of such objects as recreational and biological resources likely to be vulnerable. These results combined to yield estimates of the overall oilspill risk associated with development of the proposed lease area. This risk is compared to the existing oilspill risk from existing leases in the area. The analysis implicityly includes estimates of weathering rates and slick dispersion and an indication of the possible mitigating effects of cleanups. (Woodard-USGS)

Open-File Report↗

Sedimentation and occurrence and trends of selected nutrients, other chemical constituents, and diatoms in bottom sediment, Fall River Lake, southeast Kansas, 1948-2006

A combination of available bathymetric-survey information and bottom-sediment coring was used to investigate sedimentation and the occurrence of selected nutrients (total nitrogen and total phosphorus), organic and total carbon, 25 trace elements, diatoms, and the radionuclide cesium-137 in the bottom sediment of Fall River Lake, southeast Kansas. The total estimated volume and mass of bottom sediment deposited from 1948 through 2006 in the original conservation pool of the reservoir was 470 million cubic feet and 18.8 billion pounds, respectively. The estimated sediment volume occupied about 36 percent of the original conservation-pool, water-storage capacity of the reservoir. Mean annual net sediment deposition since 1948 in the original conservation pool of the reservoir was estimated to be 324 million pounds per year. Mean annual net sediment yield from the Fall River Lake Basin was estimated to be 585,000 pounds per square mile per year. The mean annual net loads of total nitrogen and total phosphorus deposited in the bottom sediment of Fall River Lake were estimated to be 648,000 pounds per year and 267,000 pounds per year, respectively. The estimated mean annual net yields of total nitrogen and total phosphorus from the Fall River Lake Basin were 1,170 pounds per square mile per year and 480 pounds per square mile per year, respectively. Throughout the history of Fall River Lake, total nitrogen and total phosphorus concentrations in the deposited sediment were relatively uniform. Trace element concentrations in the bottom sediment of Fall River Lake generally were uniform over time. Arsenic, chromium, nickel, and zinc concentrations typically exceeded the threshold-effects guidelines, which represent the concentrations above which toxic biological effects occasionally occur. Trace element concentrations did not exceed the probable-effects guidelines (available for eight trace elements), which represent the concentrations above which toxic biological effects usually or frequently occur. Diatom occurrence in the bottom sediment of Fall River Lake was dominated by the species Aulacoseira granulata , which is an indicator of eutrophic (nutrient-rich) conditions. The abundance of the diatom Aulacoseira granulata , combined with cyanobacteria evidence and historical water-quality data, indicated that Fall River Lake likely has been eutrophic throughout much of its history.

Kansas↗

Proceedings of the Colorado River Basin Science and Resource Management Symposium, November 18-20, 2008, Scottsdale, Arizona

Since the 1980s, four major science and restoration programs have been developed for the Colorado River Basin to address primarily the conservation of native fish and other wildlife pursuant to the Endangered Species Act (ESA): (1) Recovery Implementation Program for Endangered Fish Species in the Upper Colorado River Basin (commonly called the Upper Colorado River Endangered Fish Recovery Program) (1988); (2) San Juan River Basin Recovery Implementation Program (1992); (3) Glen Canyon Dam Adaptive Management Program (1997); and (4) Lower Colorado River Multi-Species Conservation Program (2005). Today, these four programs, the efforts of which span the length of the Colorado River, have an increasingly important influence on water management and resource conservation in the basin. The four efforts involve scores of State, Federal, and local agencies; Native American Tribes; and diverse stakeholder representatives. The programs have many commonalities, including similar and overlapping goals and objectives; comparable resources and threats to those resources; and common monitoring, research, and restoration strategies. In spite of their commonalities, until recently there had been no formal opportunity for information exchange among the programs. To address this situation, the U.S. Geological Survey (USGS) worked in coordination with the four programs and numerous Federal and State agencies to organize the first Colorado River Basin Science and Resource Management Symposium, which took place in Scottsdale, AZ, in November 2008. The symposium's primary purpose was to promote an exchange of information on research and management activities related to the restoration and conservation of the Colorado River and its major tributaries. A total of 283 managers, scientists, and stakeholders attended the 3-day symposium, which included 87 presentations and 27 posters. The symposium featured plenary talks by experts on a variety of topics, including overviews of the four restoration programs, water-management actions aimed at restoring native fish habitat, climate change, assessments of the status of native and nonnative fish populations, and Native American perspectives. Intermixed with plenary talks were four concurrent technical sessions that addressed the following important topics: (1) effects of dam and reservoir operations on downstream physical and biological resources; (2) native fish propagation and genetic management and associated challenges in co-managing native and nonnative fish in the Colorado River; (3) monitoring program design, case studies, and links to management; and (4) riparian system restoration, monitoring, and exotic species control efforts.

Scientific Investigations Report↗

Biology of North American tortoises

Chelonians have fascinated people for centuries and have been the object of biological studies for nearly as long. Perhaps the long life span and harmless demeanor of most species contribute to their wide appeal. they also represent a link to the distant past because their characteristic shell separated this line of ectotherms from all other reptiles and all other animals in the age of dinosaurs (Pough et al. 1989). However, the origins of chelonians remain a mystery.

Fish and Wildlife Research↗

Updates for Wake Atoll biosecurity management, biological control, survey, and management, and integrated pest management plans

Pests and invasive species have been defined as any organism that can have real or perceived adverse effects on operations, or the well-being of personnel, native plants, animals, their environment and ecosystem processes; attack or damage real property, supplies, equipment, or are otherwise undesirable (paraphrased from many sources including 53 Federal Register [FR] 15975, May 4, 1988, as amended at 78 FR 13507, February 28, 2013). Biosecurity programs and pest management plans can be developed and implemented with the goals of preventing the arrival of or eradication or control of pests and invasive species to reduce the potential for adverse effects. Such plans have been developed for Wake Atoll (U.S. Air Force, unpub. data 2017). Periodic plan reviews are an integral step for evaluating plan efficacy and updating plans with new information for improving plan effectiveness. This report summarizes an evaluation of past, current, and potential biosecurity and pest management for Wake with the intent this information can be used for updating existing plans. This document was prepared in cooperation with the U.S. Air Force (USAF) and surveys were performed for the 611th Civil Engineer Squadron Natural Resources Program ACES PROJECT no. YGFZ17002 under agreement number F2MUAA7116GW01 between the USAF and the U.S. Geological Survey’s Western Ecological Research Center (USGS-WERC).

Open-File Report↗

Activity center selection by northern spotted owls

The federally threatened northern spotted owl ( Strix occidentalis caurina ) has been intensively studied across its range, and habitat needs for the species have influenced forest management in northwestern North America for decades. Dense forest canopies are often reported in the scientific literature and agency management plans as an important habitat attribute for spotted owls, though the means of measuring forest canopy and interpreting species requirements vary across studies and more importantly, among management plans. We used light detection and ranging (lidar) measurements of canopy cover, canopy surface heterogeneity, and upper canopy surface connectivity, and an index of the presence of a competitive invasive species, the barred owl ( S. varia ), in multinomial discrete choice models using a Bayesian framework to evaluate selection of forest cover types by spotted owls in Oregon, USA, 2008–2015. We designated yearly activity centers based on the most biologically significant observation during the nesting season (Mar–Aug), generally centered on the nest tree. Spotted owls selected activity centers with more canopy cover and higher heterogeneity of the canopy surface within 100 m than was available within their territories. The average proportion of canopy cover within 100 m of a spotted owl activity center was 0.79 ± 0.12 (SD; range = 0.34–0.99). The presence of barred owls did not explain variability in selection of spotted owl activity centers, but barred owls might not affect third‐order habitat selection within territories, or our index was too spatially coarse to detect these effects on spotted owl resource selection. We demonstrate that lidar provides researchers and managers with a tool that can accurately measure forest canopies over large areas, and assist in mapping spotted owl habitat.

Oregon↗

Water Resources Research October 1, 1979 - September 30, 1980: Summary statements of research activities by the Water Resources Division

Research in the WRD had its beginnings in the late 1950's when the "core research" line item was added to the Congressional budget. Since this time the Federal program has grown from a "basic sciences" program to one that includes a broad spectrum of basic and applied scientific investigations. Water resources research in WRD includes the study of water in all its phases and uses the basic sciences of mathematics, chemistry, physics, biology, geology and engineering to gain a fundamental understanding of the processes that affect the movement of water and its chemical constituents through hydrologic systems. The basic knowledge and methodologies derived from water resources research are applicable not only to the solution of current problems associated with the Nation's water resources, but also to anticipated hydrologic issues.

Report↗

The USGS and the Gulf of Mexico

The U.S. Geological Survey (USGS) is committed to mapping, monitoring, and conducting research in the Gulf of Mexico and adjacent watersheds. Through a network of science centers in the five Gulf States and across the Nation, the USGS applies its biologic, geologic, geographic, and hydrologic expertise to provide unbiased scientific findings to decisionmakers, particularly members and supporters of the Gulf of Mexico Alliance (Gulf Alliance). The overarching goal of USGS Gulf Coast activities is to provide the scientific information, knowledge, and tools required to facilitate management decisions that promote restoration, increase coastal resilience, and mitigate risks associated with both artificial and natural hazards.

Fact Sheet↗

Klamath Mountains Ecoregion: Chapter 13 in Status and trends of land change in the Western United States--1973 to 2000

The Klamath Mountains Ecoregion covers approximately 47,791 km 2 (18,452 mi 2 ) of the Klamath and Siskiyou Mountains of northern California and southern Oregon (fig. 1) (Omernik, 1987; U.S. Environmental Protection Agency, 1997). The ecoregion is flanked by the Coast Range Ecoregion to the west, the Southern and Central California Chaparral and Oak Woodlands Ecoregion to the south, the Cascades and the Eastern Cascades Slopes and Foothills Ecoregions to the east, and the Willamette Valley Ecoregion to the north. The mild Mediterranean climate of the ecoregion is characterized by hot, dry summers and wet winters; the amount of winter moisture varies within the ecoregion, decreasing from west to east. The Klamath–Siskiyou Mountains region is widely recognized as an important biodiversity hotspot (Whittaker, 1960; Kruckeberg, 1984; Wagner, 1997; DellaSala and others, 1999), containing more than 3,500 plant species, more than 200 of which are endemic (Sawyer, 2007). A biological assessment by DellaSala and others (1999) ranked the Klamath–Siskiyou Mountains region as the fifth richest coniferous forest in terms of species diversity. In addition, the International Union for the Conservation of Nature considers the region an area of notable botanical importance (Wagner, 1997). Twenty-nine different species of conifers can be found in the Klamath Mountains Ecoregion (Sawyer, 1996).

California;Oregon↗

Western grebe, Aechmophorus occidentalis, wintering biology and contaminant accumulation in Commencement Bay, Puget Sound, Washington

Western Grebes wintering at the head of Commencement Bay (bordering the waterways) accumulated significant amounts of mercury, arsenic, DDE, PCBs, chlordanes, and perhaps cadmium and HCB between 17 October 1985 and 6 February 1986. No change in selenium or lead was detected, but copper declined significantly. Western Grebes were likely to accumulate even higher levels of certain contaminants because they remained in Commencement Bay for an additional 3 months after the final collection. Remige moult and bursa length were used to separate five individuals believed to represent one age class, from the remainder of the October collection. These birds, perhaps nonbreeders spending one continuous year in Puget Sound, contained the 5 highest PCB, 5 of the 8 highest DDE, and 2 of the 3 highest mercury concentrations. No evidence was found in the literature to suggest the contaminant concentrations we reported would adversely impact the Western Grebe population. As expected, lipid content of carcasses increased significantly from October (15.5%) to February (28.8%).

Canadian Field-Naturalist↗