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USGS2017

Tributyltin: Advancing the science on assessing endocrine disruption with an unconventional endocrine-disrupting compound

Tributyltin (TBT) has been recognized as an endocrine disrupting chemical (EDC) for several decades. However, only in the last decade, was its primary endocrine mechanism of action (MeOA) elucidated—interactions with the nuclear retinoid-X receptor (RXR), peroxisome proliferator-activated receptor γ (PPARγ), and their heterodimers. This molecular initiating event (MIE) alters a range of reproductive, developmental, and metabolic pathways at the organism level. It is noteworthy that a variety of MeOAs have been proposed over the years for the observed endocrine-type effects of TBT; however, convincing data for the MIE was provided only recently and now several researchers have confirmed and refined the information on this MeOA. One of the most important lessons learned from years of research on TBT concerns apparent species sensitivity. Several aspects such as the rates of uptake and elimination, chemical potency, and metabolic capacity are all important for identifying the most sensitive species for a given chemical, including EDCs. For TBT, much of this was discovered by trial and error, hence important relationships and important sensitive taxa were not identified until several decades after its introduction to the environment. As recognized for many years, TBT-induced responses are known to occur at very low concentrations for molluscs, a fact that has more recently also been observed in fish species. This review explores the MeOA and effects of TBT in different species (aquatic molluscs and other invertebrates, fish, amphibians, birds, and mammals) according to the OECD Conceptual Framework for Endocrine Disruptor Testing and Assessment (CFEDTA). The information gathered on biological effects that are relevant for populations of aquatic animals was used to construct Species Sensitivity Distributions (SSDs) based on No Observed Effect Concentrations (NOECs) and Lowest Observed Effect Concentrations (LOECs). Fish appear at the lower end of these distributions, showing that they are as sensitive as molluscs, and for some species, even more sensitive. Concentrations in the range of 1 ng/L for water exposure (10 ng/g for whole-body burden) have been shown to elicit endocrine-type responses, whereas mortality occurs at water concentrations ten times higher. Current screening and assessment methodologies as compiled in the OECD CFEDTA are able to identify TBT as a potent endocrine disruptor with a high environmental risk for the original use pattern. If those approaches had been available when TBT was introduced to the market, it is likely that its use would have been regulated sooner, thus avoiding the detrimental effects on marine gastropod populations and communities as documented over several decades.

Book chapter↗

USGS2002

The geohydrologic setting of Yucca Mountain, Nevada

This paper provides a geologic and hydrologic framework of the Yucca Mountain region for the geochemical papers in this volume. The regional geologic units, which range in age from late Precambrian through Holocene, are briefly described. Yucca Mountain is composed of dominantly pyroclastic units that range in age from 11.4 to 15.2 Ma. The principal focus of study has been on the Paintbrush Group, which includes two major zoned and welded ash-flow tuffs separated by an important hydrogeologic unit referred to as the Paintbrush non-welded (PTn). The regional structural setting is currently one of extension, and the major local tectonic domains are presented together with a tectonic model that is consistent with the known structures at Yucca Mountain. Streamflow in this arid to semi-arid region occurs principally in intermittent or ephemeral channels. Near Yucca Mountain, the channels of Fortymile Wash and Amargosa River collect infrequent runoff from tributary basins, ultimately draining to Death Valley. Beneath the surface, large-scale interbasin flow of groundwater from one valley to another occurs commonly in the region. Regional groundwater flow beneath Yucca Mountain originates in the high mesas to the north and returns to the surface either in southern Amargosa Desert or in Death Valley, where it is consumed by evapotranspiration. The water table is very deep beneath the upland areas such as Yucca Mountain, where it is 500-750 m below the land surface, providing a large thickness of unsaturated rocks that are potentially suitable to host a nuclear-waste repository. The nature of unsaturated flow processes, which are important for assessing radionuclide migration, are inferred mainly from hydrochemical or isotopic evidence, from pneumatic tests of the fracture systems, and from the results of in situ experiments. Water seeping down through the unsaturated zone flows rapidly through fractures and more slowly through the pores of the rock matrix. Although capillary forces are expected to divert much of the flow around repository openings, some may drip onto waste packages, ultimately causing release of radionuclides, followed by transport down to the water table. ?? 2002 Elsevier Science Ltd. All rights reserved.

Applied Geochemistry↗

USGS2024

Population and spatial dynamics of desert bighorn sheep in Grand Canyon during an outbreak of respiratory pneumonia

Introduction: Terrestrial species in riverine ecosystems face unique constraints leading to diverging patterns of population structure, connectivity, and disease dynamics. Desert bighorn sheep ( Ovis canadensis nelsoni ) in Grand Canyon National Park, a large native population in the southwestern USA, offer a unique opportunity to evaluate population patterns and processes in a remote riverine system with ongoing anthropogenic impacts. We integrated non-invasive, invasive, and citizen-science methods to address questions on abundance, distribution, disease status, genetic structure, and habitat fragmentation. Methods: We compiled bighorn sightings collected during river trips by park staff, commercial guides, and private citizens from 2000–2018 and captured bighorn in 2010–2016 to deploy GPS collars and test for disease. From 2011–2015, we non-invasively collected fecal samples and genotyped them at 9–16 microsatellite loci for individual identification and genetic structure. We used assignment tests to evaluate genetic structure and identify subpopulations, then estimated gene flow and recent migration to evaluate fragmentation. We used spatial capture-recapture to estimate annual population size, distribution, and trends after accounting for spatial variation in detection with a resource selection function model. Results and discussion: From 2010–2018, 3,176 sightings of bighorn were reported, with sightings of 56–145 bighorn annually on formal surveys. From 2012–2016, bighorn exhibiting signs of respiratory disease were observed along the river throughout the park. Of 25 captured individuals, 56% were infected by Mycoplasma ovipneumoniae , a key respiratory pathogen, and 81% were recently exposed. Pellet sampling for population estimation from 2011–2015 yielded 1,250 genotypes and 453 individuals. We detected 6 genetic clusters that exhibited mild to moderate genetic structure ( F ST 0.022–0.126). The river, distance, and likely topography restricted recent gene flow, but we detected cross-river movements in one section via genetic recaptures, no subpopulation appeared completely isolated, and genetic diversity was among the highest reported. Recolonization of one large stretch of currently empty habitat appears limited by the constrained topology of this system. Annual population estimates ranged 536–552 (95% CrI range 451–647), lamb:ewe ratios varied, and no significant population decline was detected. We provide a multi-method sampling framework useful for sampling other wildlife in remote riverine systems.

Arizona↗

USGS2016

Contrasts between channels and backwaters in a large, floodplain river: Testing our understanding of nutrient cycling, phytoplankton abundance, and suspended solids dynamics

In floodplain rivers, variability in hydraulic connectivity interacts with biogeochemistry to determine the distribution of suspended and dissolved substances. Nutrient, chlorophyll a , and suspended solids data spanning longitudinal (5 study reaches across 1300 river km), lateral (main channel and backwaters), and temporal (1994–2011) gradients in the Upper Mississippi River (UMR) were used to examine the extent to which observed differences between the main channel and backwaters were consistent with expectations based on current understanding of biogeochemical processes in large rivers. For N and P, the results largely conformed to expectations. N concentrations were greater in the main channel than in the backwaters in 82 to 96% of the observations across river reaches. Maximum TP concentrations generally occurred in backwaters during summer, when backwater TP often exceeded that of the main channel. Flux of P from sediments may be a substantial source of water-column P in UMR backwaters in summer. The data for suspended solids and chlorophyll a suggest that some refinements are needed of our understanding of ecosystem processes in large rivers. During low-discharge conditions, concentrations of inorganic suspended solids often were greater in backwaters than in the main channel, suggesting the importance of sediment resuspension. Chlorophyll a concentrations were usually greater in backwaters than in the main channel, but exceptions indicate that phytoplankton abundance in the main channel of the UMR can sometimes be greater than is typically expected for large rivers.

Freshwater Science↗

USGS2010

Extended abstracts from the Coastal Habitats in Puget Sound (CHIPS) 2006 Workshop

Puget Sound is the second largest estuary in the United States. Its unique geology, climate, and nutrient-rich waters produce and sustain biologically productive coastal habitats. These same natural characteristics also contribute to a high quality of life that has led to a significant growth in human population and associated development. This population growth, and the accompanying rural and urban development, has played a role in degrading Puget Sound ecosystems, including declines in fish and wildlife populations, water-quality issues, and loss and degradation of coastal habitats. In response to these ecosystem declines and the potential for strategic large-scale preservation and restoration, a coalition of local, State, and Federal agencies, including the private sector, Tribes, and local universities, initiated the Puget Sound Nearshore Ecosystem Restoration Project (PSNERP). The Nearshore Science Team (NST) of PSNERP, along with the U.S. Geological Survey, developed a Science Strategy and Research Plan (Gelfenbaum and others, 2006) to help guide science activities associated with nearshore ecosystem restoration. Implementation of the Research Plan includes a call for State and Federal agencies to direct scientific studies to support PSNERP information needs. In addition, the overall Science Strategy promotes greater communication with decision makers and dissemination of scientific results to the broader scientific community. On November 14–16, 2006, the U.S. Geological Survey sponsored an interdisciplinary Coastal Habitats in Puget Sound (CHIPS) Research Workshop at Fort Worden State Park, Port Townsend, Washington. The main goals of the workshop were to coordinate, integrate, and link research on the nearshore of Puget Sound. Presented research focused on three themes: (1) restoration of large river deltas; (2) recovery of the nearshore ecosystem of the Elwha River; and (3) effects of urbanization on nearshore ecosystems. The more than 35 presentations covered a wide range of ongoing inter-disciplinary research, including studies of sediment geochemistry of aquatic environments, sediment budgets, tracking fish pathways, expansion of invasive forams, beach and nearshore sedimentary environments, using influence diagrams as a decision support tool, forage fish, submarine groundwater, and much, much more. The primary focus within these themes was on developing information on the physical, chemical, and biological processes, as well as the human dimensions, associated with the restoration or rehabilitation of the nearshore environment. The workshop was an excellent opportunity for USGS scientists and collaborators who are working on Puget Sound coastal habitats to present their preliminary findings, discuss upcoming research, and to identify opportunities for interdisciplinary collaboration. A compilation of extended abstracts from workshop participants, this proceedings volume serves as a useful reference for attendees of the workshop and for those unable to attend. Taken together, the abstracts in this report provide a view of the current status of USGS multidisciplinary research on Puget Sound coastal habitats.

Open-File Report↗

USGS2007

Current-use pesticides and organochlorine compounds in precipitation and lake sediment from two high-elevation national parks in the Western United States

Current-use pesticides (CUPs) and banned organochlorine compounds (OCCs) were measured in precipitation (snowpack and rain) and lake sediments from two national parks in the Western United States to determine their occurrence and distribution in high-elevation environments. CUPs frequently detected in snow were endosulfan, dacthal, and chlorothalonil in concentrations ranging from 0.07 to 2.4 ng/L. Of the OCCs, chlordane, hexachlorobenzene, and two polychlorinated biphenyl congeners were detected in only one snow sample each. Pesticides most frequently detected in rain were atrazine, carbaryl, and dacthal in concentrations from 3.0 to 95 ng/L. Estimated annual deposition rates in one of the parks were 8.4 ??g/m2 for atrazine, 9.9 ??g/m2 for carbaryl, and 2.6 ??g/m2 for dacthal, of which >85% occurred during summer. p,p'-DDE and p,p'-DDD were the most frequently detected OCCs in surface sediments from lakes. However, concentrations were low (0.12 to 4.7 ??g/kg) and below levels at which harmful effects for benthic organisms are likely to be observed. DDD and DDE concentrations in an age-dated sediment core suggest that atmospheric deposition of DDT and its degradates, and possibly other banned OCCs, to high-elevation areas have been decreasing since the 1970s. Dacthal and endosulfan sulfate were present in low concentrations (0.11 to 1.2 ??g/kg) and were the only CUPs detected in surface sediments. Both pesticides were frequently detected in snow, confirming that some CUPs entering high-elevation aquatic environments through atmospheric deposition are accumulating in lake sediments and potentially in aquatic biota as well. ?? 2007 Springer Science+Business Media, Inc.

Archives of Environmental Contamination and Toxico↗

USGS1987

Evaluation of the stability of gas hydrates in Northern Alaska

The factors which control the distribution of in situ gas hydrate deposits in colder regions such as Northern Alaska include; mean annual surface temperatures (MAST), geothermal gradients above and below the base of permafrost, subsurface pressures, gas composition, pore-fluid salinity and the soil condition. Currently existing data on the above parameters for the forty-six wells located in Northern Alaska were critically examined and used in calculations of depths and thicknesses of gas hydrate stability zones. To illustrate the effect of gas hydrate stability zones, calculations were done for a variable gas composition using the thermodynamic model of Holder and John (1982). The hydrostatic pressure gradient of 9.84 kPa/m (0.435 lbf/in 2 ft), the salinity of 10 parts per thousand (ppt) and the coarse-grained soil conditions were assumed. An error analysis was performed for the above parameters and the effect of these parameters on hydrate stability zone calculations were determined. After projecting the hydrate stability zones for the forty-six wells, well logs were used to identify and to obtain values for the depth and thickness of hydrate zones. Of the forty-six wells, only ten wells showed definite evidence of the presence of gas hydrates.

Alaska↗

USGS2020

Regional ocean models indicate changing limits to biological invasions in the Bering Sea

Minimal vessel traffic and cold water temperatures are believed to limit non-indigenous species (NIS) in high-latitude ecosystems. We evaluated whether suitable conditions exist in the Bering Sea for the introduction, survival, and reproduction of NIS. We compiled temperature and salinity thresholds of known NIS and compared these to ocean conditions projected during two study periods: current (2003-2012) and mid-century (2030-2039). We also explored patterns of vessel traffic and connectivity for U.S. Bering Sea ports. We found the southeastern Bering Sea had suitable conditions for the year-round survival of 80% of NIS assessed (n=42). However, only 52% of NIS had conditions suitable for reproduction or development (n=25). Conditions north of 58° N that include sub-zero winter water temperatures were unsuitable for the survival and reproduction of most NIS. While mid-century models predicted a northward expansion of suitable conditions, conditions for reproduction remained marginal. Within the highly suitable southeastern Bering Sea is the port of Dutch Harbor, which received the most vessel arrivals and ballast water discharge in the U.S. Bering Sea. Our findings illustrate the potential vulnerability of a commercially important subarctic ecosystem and highlight the need to consider NIS reproductive and developmental life phases when evaluating limits to their establishment.

ICES Journal of Marine Science↗

USGS1994

Airborne remote sensing for geology and the environment; present and future

In 1988, a group of leading experts from government, academia, and industry attended a workshop on airborne remote sensing sponsored by the U.S. Geological Survey (USGS) and hosted by the Branch of Geophysics. The purpose of the workshop was to examine the scientific rationale for airborne remote sensing in support of government earth science in the next decade. This report has arranged the six resulting working-group reports under two main headings: (1) Geologic Remote Sensing, for the reports on geologic mapping, mineral resources, and fossil fuels and geothermal resources; and (2) Environmental Remote Sensing, for the reports on environmental geology, geologic hazards, and water resources. The intent of the workshop was to provide an evaluation of demonstrated capabilities, their direct extensions, and possible future applications, and this was the organizational format used for the geologic remote sensing reports. The working groups in environmental remote sensing chose to present their reports in a somewhat modified version of this format. A final section examines future advances and limitations in the field. There is a large, complex, and often bewildering array of remote sensing data available. Early remote sensing studies were based on data collected from airborne platforms. Much of that technology was later extended to satellites. The original 80-m-resolution Landsat Multispectral Scanner System (MSS) has now been largely superseded by the 30-m-resolution Thematic Mapper (TM) system that has additional spectral channels. The French satellite SPOT provides higher spatial resolution for channels equivalent to MSS. Low-resolution (1 km) data are available from the National Oceanographic and Atmospheric Administration's AVHRR system, which acquires reflectance and day and night thermal data daily. Several experimental satellites have acquired limited data, and there are extensive plans for future satellites including those of Japan (JERS), Europe (ESA), Canada (Radarsat), and the United States (EOS). There are currently two national airborne remote sensing programs (photography, radar) with data archived at the USGS' EROS Data Center. Airborne broadband multispectral data (comparable to Landsat MSS and TM but involving several more channels) for limited geographic areas also are available for digital processing and analysis. Narrow-band imaging spectrometer data are available for some NASA experiment sites and can be acquired for other locations commercially. Remote sensing data and derivative images, because of the uniform spatial coverage, availability at different resolutions, and digital format, are becoming important data sets for geographic information system (GIS) analyses. Examples range from overlaying digitized geologic maps on remote sensing images and draping these over topography, to maps of mineral distribution and inferred abundance. A large variety of remote sensing data sets are available, with costs ranging from a few dollars per square mile for satellite digital data to a few hundred dollars per square mile for airborne imaging spectrometry. Computer processing and analysis costs routinely surpass these expenses because of the equipment and expertise necessary for information extraction and interpretation. Effective use requires both an understanding of the current methodology and an appreciation of the most cost-effective solution.

Bulletin↗

USGS2003

Coupling ice-sheet and climate models for simulation of former ice sheets

This chapter explores the development of coupled climate and ice-sheet models over the past two decades, discusses the current technical and physical capabilities of models, and identifies future work for developing a better understanding of ice-climate events that have punctuated Earth history. The chapter also illustrates the complex behavior of the climate system and the modeling challenges posed by the observations. Climate and ice-sheet models continue to improve, both in terms of model physics and technical capabilities. Regional climate model simulations should be carried out for each temporal snapshot or matrix element for improved mass–balance calculation over the ice sheets. Fully coupled atmosphere-ocean-cryosphere-land surface models are required for addressing a number of paleoclimatic puzzles, particularly with respect to millennial climate variability. The concerted effort to better understand West Antarctic Ice Sheet dynamics, and the development of subglacial hydrological models should lead to improvements in the next generation of ice-sheet models and help to address millennial-scale variability in ice-sheet/climate models.

Developments in Quaternary Sciences↗

USGS2021

Translocations maintain genetic diversity and increase connectivity in sea otters, Enhydra lutris

Sea otters, Enhydra lutris , were once abundant along the nearshore areas of the North Pacific. The international maritime fur trade that ended in 1911 left 13 small remnant populations with low genetic diversity. Subsequent translocations into previously occupied habitat resulted in several reintroduced populations along the coast of North America. We sampled sea otters between 2008 and 2011 throughout much of their current range and used 19 nuclear microsatellite markers to evaluate genetic diversity, population structure, and connectivity between remnant and reintroduced populations. Average genetic diversity within populations was similar: observed heterozygosity 0.55 and 0.53, expected heterozygosity 0.56 and 0.52, unbiased expected heterozygosity 0.57 and 0.52, for reintroduced and remnant populations, respectively. Sea otter population structure was greatest between the Northern and Southern sea otters with further structuring in Northern sea otters into Western, Central, and Southeast populations (including the reintroduced populations). Migrant analyses suggest the successful reintroductions and growth of remnant groups have enhanced connectivity and gene flow between populations throughout many of the sampled Northern populations. We recommend that future management actions for the Southern sea otter focus on future reintroductions to fill the gap between the California and Washington populations ultimately restoring gene flow to the isolated California population.

North Pacific↗

USGS2016

Nutrient dynamics of the Delta: Effects on primary producers

Increasing clarity of Delta waters, the emergence of harmful algal blooms, the proliferation of aquatic water weeds, and the altered food web of the Delta have brought nutrient dynamics to the forefront. This paper focuses on the sources of nutrients, the transformation and uptake of nutrients, and the links of nutrients to primary producers. The largest loads of nutrients to the Delta come from the Sacramento River with the San Joaquin River seasonally important, especially in the summer. Nutrient concentrations reflect riverine inputs in winter and internal biological processes during periods of lower flow with internal nitrogen losses within the Delta estimated at approximately 30% annually. Light regime, grazing pressure, and nutrient availability influence rates of primary production at different times and locations within the Delta. The roles of the chemical form of dissolved inorganic nitrogen in growth rates of primary producers in the Delta and the structure of the open-water algal community are currently topics of much interest and considerable debate. Harmful algal blooms have been noted since the late 1990s, and the extent of invasive aquatic macrophytes (both submerged and free-floating forms) has increased especially during years of drought. Elevated nutrient loads must be considered in terms of their ability to support this excess biomass. Modern sensor technology and networks are now deployed that make high-frequency measurements of nitrate, ammonium, and phosphate. Data from such instruments allow a much more detailed assessment of the spatial and temporal dynamics of nutrients. Four fruitful directions for future research include utilizing continuous sensor data to estimate rates of primary production and ecosystem respiration, linking hydrodynamic models of the Delta with the transport and fate of dissolved nutrients, studying nutrient dynamics in various habitat types, and exploring the use of stable isotopes to trace the movement and fate of effluent-derived nutrients.

California↗

USGS2012

The challenge of retarding erosion of island biodiversity through phytosanitary measures: An update on the case of Puccinia psidii in Hawai'i

Most rust fungi are highly host specific, but Puccina psidii has an extremely broad host range within Myrtaceae and gained notoriety with a host jump in its native Brazil from common guava ( Psidium guajava ) to commercial Eucalyptus plantations. When detected in Hawaiʻi in April 2005, the first invasion outside the neotropics/subtropics, there was immediate concern for ʻōhiʻa (Metrosideros polymorpha). ʻŌhiʻa composes 80% of native forest statewide, providing stable watersheds and habitat for most Hawaiian forest birds and plants. Within months, rust spores spread statewide on wind currents, but ʻōhiʻa was found to be only a minor host, showing very light damage. The primary host was nonnative rose apple ( Syzygium jambos ), severely affected at a landscape scale, but the epiphytotic subsided as rose apple was largely defoliated or killed within several years. The limited and stable host range in Hawaiʻi (versus elsewhere) led the local conservation community to explore possibilities for excluding new genetic strains of P. psidii . Although national/international phytosanitary standards require strong scientific justification for regulations involving an infraspecific taxonomic level, hopes were buoyed when genetic studies showed no apparent genetic variation/evolution in Hawaiʻi's rust strain. A sophisticated genetic study of P. psidii in its home range is near completion; genetic variation is substantial, and host species strongly influences rust population structure. To prevent introduction of new strains, the Hawaiʻi Department of Agriculture is moving ahead with establishing stringent measures that restrict entry of Myrtaceae into Hawaiʻi. Meanwhile, P. psidii poses a major threat to Myrtaceae biodiversity worldwide.

Hawai'i↗

USGS2008

Distribution of pesticides, PAHs, PCBs, and bioavailable metals in depositional sediments of the lower Missouri River, USA

The lower Missouri River was studied to determine the distribution of selected persistent organic pollutants and bioavailable metals in depositional sediments. Nineteen sites between Omaha, Nebraska and Jefferson City, Missouri were sampled. This stretch of the river receives point-source and non-point-source inputs from industrial, urban, and agricultural activities. As part of an ecological assessment of the river, concentrations of 29 legacy organochlorine pesticides (OC pesticides), including chlordanes, DDTs, and hexachlorocyclohexanes; a select list of current-use pesticides, including trifluralin, diazinon, chlorpyrifos, and permethrin, polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), divalent metals (copper, nickel, zinc, cadmium, and lead), and polybrominated diphenyl ethers (PBDEs) were determined. Concentrations (dry weight basis) of OC pesticides in the sediments were less than 1 ng/g, with the exception of the backwater sediment collected from the mouth of the Blue River in the Kansas City metropolitan area, which contained up to 20 ng/g total chlordane, 8.1 ng/g p,p???-DDE, 1.5 ng/g lindane, 4.8 ng/g dieldrin, and 3 ng/g endrin. Concentrations of chlorpyrifos and permethrin ranged from less than 1 ng/g to 5.5 ng/g and 44 ng/g, respectively. Concentrations of PCBs ranged from less than 11 ng/g to 250 ng/g, with the Blue River and Sibley sediments containing 100 and 250 ng/g total PCBs, respectively. Concentrations of total PAHs at 17 of the 19 sites ranged from 250 to 700 ng/g, whereas the Riverfront and Blue River sites in Kansas City contained 1100 ng/g and nearly 4000 ng/g, respectively. Concentrations of the metals did not vary significantly among most sites; however, the Blue River site contained elevated concentrations of zinc (104 ??g/g), cadmium (0.7 ??g/g), and lead (34 ??g/g) compared to the other sites. The moderately high concentrations of acid-volatile sulfide in the sediments suggest a low potential for metal toxicity to benthic organisms along this reach of the Missouri River. The depositional area sediments contained concentrations of the targeted persistent organic chemicals and metals that were below published probable effect level concentrations. ?? 2008 Springer Science+Business Media, LLC.

Archives of Environmental Contamination and Toxico↗

USGS2013

Fort Collins Science Center Ecosystem Dynamics branch--interdisciplinary research for addressing complex natural resource issues across landscapes and time

The Ecosystem Dynamics Branch of the Fort Collins Science Center offers an interdisciplinary team of talented and creative scientists with expertise in biology, botany, ecology, geology, biogeochemistry, physical sciences, geographic information systems, and remote-sensing, for tackling complex questions about natural resources. As demand for natural resources increases, the issues facing natural resource managers, planners, policy makers, industry, and private landowners are increasing in spatial and temporal scope, often involving entire regions, multiple jurisdictions, and long timeframes. Needs for addressing these issues include (1) a better understanding of biotic and abiotic ecosystem components and their complex interactions; (2) the ability to easily monitor, assess, and visualize the spatially complex movements of animals, plants, water, and elements across highly variable landscapes; and (3) the techniques for accurately predicting both immediate and long-term responses of system components to natural and human-caused change. The overall objectives of our research are to provide the knowledge, tools, and techniques needed by the U.S. Department of the Interior, state agencies, and other stakeholders in their endeavors to meet the demand for natural resources while conserving biodiversity and ecosystem services. Ecosystem Dynamics scientists use field and laboratory research, data assimilation, and ecological modeling to understand ecosystem patterns, trends, and mechanistic processes. This information is used to predict the outcomes of changes imposed on species, habitats, landscapes, and climate across spatiotemporal scales. The products we develop include conceptual models to illustrate system structure and processes; regional baseline and integrated assessments; predictive spatial and mathematical models; literature syntheses; and frameworks or protocols for improved ecosystem monitoring, adaptive management, and program evaluation. The descriptions in this fact sheet provide snapshots of our three research emphases, followed by descriptions of select current projects.

Fact Sheet↗

USGS2009

A marine biogeochemical perspective on black shale deposition

Deposition of marine black shales has commonly been interpreted as having involved a high level of marine phytoplankton production that promoted high settling rates of organic matter through the water column and high burial fluxes on the seafloor or anoxic (sulfidic) water-column conditions that led to high levels of preservation of deposited organic matter, or a combination of the two processes. Here we review the hydrography and the budgets of trace metals and phytoplankton nutrients in two modern marine basins that have permanently anoxic bottom waters. This information is then used to hindcast the hydrography and biogeochemical conditions of deposition of a black shale of Late Jurassic age (the Kimmeridge Clay Formation, Yorkshire, England) from its trace metal and organic carbon content. Comparison of the modern and Jurassic sediment compositions reveals that the rate of photic zone primary productivity in the Kimmeridge Sea, based on the accumulation rate of the marine fraction of Ni, was as high as 840 g organic carbon m − 2 yr −1 . This high level was possibly tied to the maximum rise of sea level during the Late Jurassic that flooded this and other continents sufficiently to allow major open-ocean boundary currents to penetrate into epeiric seas. Sites of intense upwelling of nutrient-enriched seawater would have been transferred from the continental margins, their present location, onto the continents. This global flooding event was likely responsible for deposition of organic matter-enriched sediments in other marine basins of this age, several of which today host major petroleum source rocks. Bottom-water redox conditions in the Kimmeridge Sea, deduced from the V:Mo ratio in the marine fraction of the Kimmeridge Clay Formation, varied from oxic to anoxic, but were predominantly suboxic, or denitrifying. A high settling flux of organic matter, a result of the high primary productivity, supported a high rate of bacterial respiration that led to the depletion of O 2 in the bottom water. A high rate of burial of labile organic matter, albeit a low percentage of primary productivity, in turn promoted anoxic conditions in the sediment pore waters that enhanced retention of trace metals deposited from the water column.

Earth-Science Reviews↗

USGS2015

Establishing a definition of polar bear (Ursus maritimus) health: A guide to research and management activities

The meaning of health for wildlife and perspectives on how to assess and measure health, are not well characterized. For wildlife at risk, such as some polar bear (Ursus maritimus) subpopulations, establishing comprehensive monitoring programs that include health status is an emerging need. Environmental changes, especially loss of sea ice habitat, have raised concern about polar bear health. Effective and consistent monitoring of polar bear health requires an unambiguous definition of health. We used the Delphi method of soliciting and interpreting expert knowledge to propose a working definition of polar bear health and to identify current concerns regarding health, challenges in measuring health, and important metrics for monitoring health. The expert opinion elicited through the exercise agreed that polar bear health is defined by characteristics and knowledge at the individual, population, and ecosystem level. The most important threats identified were in decreasing order: climate change, increased nutritional stress, chronic physiological stress, harvest management, increased exposure to contaminants, increased frequency of human interaction, diseases and parasites, and increased exposure to competitors. Fifteen metrics were identified to monitor polar bear health. Of these, indicators of body condition, disease and parasite exposure, contaminant exposure, and reproductive success were ranked as most important. We suggest that a cumulative effects approach to research and monitoring will improve the ability to assess the biological, ecological, and social determinants of polar bear health and provide measurable objectives for conservation goals and priorities and to evaluate progress.

Science of the Total Environment↗

USGS2016

Exposure of native bees foraging in an agricultural landscape to current-use pesticides

The awareness of insects as pollinators and indicators of environmental quality has grown in recent years, partially in response to declines in honey bee (Apis mellifera) populations. While most pesticide research has focused on honey bees, there has been less work on native bee populations. To determine the exposure of native bees to pesticides, bees were collected from an existing research area in northeastern Colorado from two land cover types: grasslands (2013-2014) and wheat fields (2014). Traps were deployed bi-monthly during the summer at each land cover type and all bees, regardless of species, were composited as whole samples and analyzed for 136 current-use pesticides and degradates. This reconnaissance approach provides a sampling of all species and represents overall pesticide exposure (internal and external). Nineteen pesticides and degradates were detected in 54 composite samples collected. Compounds detected in >10% of the samples included the insecticides thiamethoxam (46%), bifenthrin (28%), clothianidin (24%), chlorpyrifos (17%), and imidacloprid (13%), the fungicides azoxystrobin (17%), and pyraclostrobin (11%), and the herbicide atrazine (19%). Concentrations ranged from 1.1 to 312 ng/g for individual pesticides. Pesticides were detected in samples collected from both grasslands and wheat fields; the location of the sample and the surrounding land cover at the 1000 m buffer influenced the pesticides detected but because of a small number of temporally comparable samples, correlations between pesticide concentration and land cover were not significant. The results show native bees collected in both grasslands and wheat fields are exposed to multiple pesticides, these results can direct future research on routes/timing of pesticide exposure and the design of future conservation efforts for pollinators.

Colorado↗