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USGS2017

HERA: A dynamic web application for visualizing community exposure to flood hazards based on storm and sea level rise scenarios

The Hazard Exposure Reporting and Analytics (HERA) dynamic web application was created to provide a platform that makes research on community exposure to coastal-flooding hazards influenced by sea level rise accessible to planners, decision makers, and the public in a manner that is both easy to use and easily accessible. HERA allows users to (a) choose flood-hazard scenarios based on sea level rise and storm assumptions, (b) appreciate the modeling uncertainty behind a chosen hazard zone, (c) select one or several communities to examine exposure, (d) select the category of population or societal asset, and (e) choose how to look at results. The application is designed to highlight comparisons between (a) varying levels of sea level rise and coastal storms, (b) communities, (c) societal asset categories, and (d) spatial scales. Through a combination of spatial and graphical visualizations, HERA aims to help individuals and organizations to craft more informed mitigation and adaptation strategies for climate-driven coastal hazards. This paper summarizes the technologies used to maximize the user experience, in terms of interface design, visualization approaches, and data processing.

Computers & Geosciences↗

USGS2020

Amphibian population declines: 30 Years of progress in confronting a complex problem

In 1989, it dawned on participants at the First World Congress of Herpetology that observed declines in amphibian populations might actually be global in scope and unprecedented in severity. Three decades of research since then has produced an enormous increase in our knowledge of amphibian ecology and appreciation of the complexity of possible causes for amphibian population declines. In September 2019, 30 yr after the First World Congress ended, a day-long, international symposium on amphibian population declines was held at the Redpath Museum of McGill University in Montreal, Canada. Symposium participants drew upon the knowledge gained over three decades of study to look ahead with fresh ideas to address this vital aspect of the global decline of biodiversity. Despite tremendous progress over the past three decades there is still much about amphibian ecology, population biology, and pathology that remains unknown. Amphibian declines have turned out to be more complex than originally expected and the result of multiple possible causes acting across landscapes, among taxa, or between populations in ways that are not at all uniform. The papers in this special issue of Herpetologica , which stem from the symposium, explore much of our current understanding of amphibian declines and their causes.

Herpetologica↗

USGS2004

Measuring mercury and other elemental components in tree rings

There has been considerable interest in measuring heavy metal pollution, such as mercury, using tree ring analysis. Since 1970, this method has provided a historical snapshot of pollutant concentrations near hazardous waste sites. Traditional methods of analysis have long been used with heavy metal pollutants such as mercury. These methods, such as atomic fluorescence and laser ablation, are sometimes time consuming and expensive to implement. In recent years, ion beam techniques, such as Particle Induced X-Ray Emission (PIXE), have been used to measure large numbers of elements. Most of the existing research in this area has been completed for low to medium atomic number pollutants, such as titanium, cobalt, nickel, and copper. Due to the reduction of sensitivity, it is often difficult or impossible to use traditional low energy (few MeV) PIXE analysis for pollutants with large atomic numbers. For example, the PIXE detection limit for mercury was recently measured to be about 1 ppm for a spiked Southern Magnolia wood sample [ref. 1]. This presentation will compare PIXE and standard chemical concentration results for a variety of wood samples.

Conference Paper↗

USGS2016

Photoperiod and nesting phenology of whooping cranes at two captive sites

Increasing daylight is known to be a breeding stimulus in many avian species breeding in northern latitudes. This is thought to be true for cranes that breed in such latitudes including the Whooping Crane (Grus americana). For this reason, the captive breeding centers use artificial light to lengthen daylight hours, but no study has been done to look at the effect of such lighting on the reproductive season. We examined the past light cycles and breeding season results from Whooping Crane pairs at USGS Patuxent Wildlife Research Center and the International Crane Foundation. At Patuxent two lights were used to produce light of 170 lux in the pens. On average, photoperiod lights were turned on Feb. 17 (range Feb. 11-24). With two lights per pen, whooping cranes laid their first egg on average 10 days earlier than when one light was used and 16 days earlier than when no lights were used. At ICF the difference between lights on a pen and no lights was only 8 days difference in first lay dates, but still this was statistically significant.

Conference Paper↗

USGS1985

MAJOR SOURCE OF SIDE-LOOKING AIRBORNE RADAR IMAGERY FOR RESEARCH AND EXPLORATION: THE U. S. GEOLOGICAL SURVEY.

The US Geological Survey (USGS) instituted a program in 1980 to acquire side-looking airbore radar (SLAR) data and make these data readily available to the public in a mosaic format comparable to the USGS 1:250,000-scale topographic map series. The SLAR data are also available as strip images at an acquisition scale of 1:250,000 or 1:400,000 (depending on the acquisition system), as a variety of print products and indexes, and in a limited amount in digital form on computer compatible tapes. Three different commercial X-band (3-cm) systems were used to acquire the imagery for producing the mosaics.

Conference Paper↗

USGS2001

Digital geologic map of the Fawnskin 7.5' quadrangle, San Bernardino County, California

Version 1.1 of this Open-File Report contains a digital geologic map and map database of the Fawnskin 7.5' quadrangle, San Bernardino County, California, that includes: 1. ARC/INFO (Environmental Systems Research Institute) version 7.2.1 double-precision coverages of the various elements of the geologic map 2. A PostScript (.ps) file to plot the geologic map on a topographic base, containing a Correlation of Map Units diagram and a Description of Map Units 3. Portable Document Format (.pdf) files of: a. This Readme; includes in Appendix I, data contained in fskn_met.txt b. The same graphic as plotted in 2 above. (Test plots from this .pdf do not produce 1:24,000-scale maps. Adobe Acrobat page-size settings control map scale.) This release includes features not found in most other digital geologic maps, in that all polygons, lines, and points in the coverage are encoded with detailed, comprehensive geologic data contained in six INFO data tables (.rel). (See Matti and others, 1998a, 1998b, and 1998c, for information on how the encoding may be accessed and utilized.) No paper map is included in the Open-File Report, but a PostScript plot file containing an image of the geologic map sheet, topographic base, Correlation of Map Units (CMU), and detailed Description of Map Units (DMU) is. The Correlation of Map Units and Description of Map Units are in the editorial format of USGS Miscellaneous Investigations Series maps (I-maps) but have not been edited to comply with I-map standards. Within the geologic map data package, map units are identified by such standard geologic-map criteria as formation name, age, and lithology. Even though this is an author-prepared report, every attempt has been made to closely adhere to the stratigraphic nomenclature of the U.S. Geological Survey. Descriptions of units can be obtained by viewing or plotting the .pdf file (3b above) or plotting the PostScript file (2 above). If roads in some areas, especially roads that parallel topographic contours, do not show well on plots of the geologic map, we recommend use of the USGS Fawnskin 7.5' topographic quadrangle in conjunction with the geologic map.

California↗

USGS1995

A 24-hour remote surveillance system for terrestrial wildlife studies

The configuration, components, specifications and costs of a state-of-the-art closed-circuit television system with wide application for wildlife research and management are described. The principal system components consist of color CCTV camera with zoom lens, pan/tilt system, infrared illuminator, heavy duty tripod, coaxial cable, coaxitron system, half-duplex equalizing video/control amplifier, timelapse video cassette recorder, color video monitor, VHS video cassettes, portable generator, fuel tank and power cable. This system was developed and used in a study of Mississippi sandhiIl Crane (Grus canadensis pratensis) behaviors during incubation, hatching and fledging. The main advantages of the system are minimal downtime where a complete record of every event, its time of occurrence and duration, are permanently recorded and can be replayed as many times as necessary thereafter to retrieve the data. The system is particularly applicable for studies of behavior and predation, for counting individuals, or recording difficult to observe activities. The system can be run continuously for several weeks by two people, reducing personnel costs. This paper is intended to provide biologists who have litte knowledge of electronics with a system that might be useful to their specific needs. The disadvantages of this system are the initial costs (about $9800 basic, 1990-1991 U.S. dollars) and the time required to playback video cassette tapes for data retrieval, but the playback can be sped up when litte or no activity of interest is taking place. In our study, the positive aspects of the system far outweighed the negative.

Journal of Field Ornithology↗

USGS1994

A bibliography of "Dreissena polymorpha in European and Russian waters: 1964-1993"

A bibliography of over 1000 papers on the biology, impacts, and control of the zebra mussel (Dreissena polymorpha) in European and Russian waters is compiled to aid scientists and managers in addressing this species of economic and ecological importance. The bibliography primarily includes publications between the early 1960s and early 1990s but does contain some earlier references not found in another extensive bibliography published in 1964. This bibliography will be a valuable tool, especially to water users and environmental scientists in North America where zebra mussels have recently invaded and become established.

Journal of Shellfish Research↗

USGS2022

Histochemical evidence for nitrogen‐transfer Endosymbiosis in non‐photosynthetic cells of leaves and inflorescence bracts of angiosperms

We used light and confocal microscopy to visualize bacteria in leaf and bract cells of more than 30 species in 18 families of seed plants. Through histochemical analysis, we detected hormones (including ethylene and nitric oxide), superoxide, and nitrogenous chemicals (including nitric oxide and nitrate) around bacteria within plant cells. Bacteria were observed in epidermal cells, various filamentous and glandular trichomes, and other non-photosynthetic cells. Most notably, bacteria showing nitrate formation based on histochemical staining were present in glandular trichomes of some dicots (e.g., Humulus lupulus and Cannabis sativa ). Glandular trichome chemistry is hypothesized to function to scavenge oxygen around bacteria and reduce oxidative damage to intracellular bacterial cells. Experiments to assess the differential absorption of isotopic nitrogen into plants suggest the assimilation of nitrogen into actively growing tissues of plants, where bacteria are most active and carbohydrates are more available. The leaf and bract cell endosymbiosis types outlined in this paper have not been previously reported and may be important in facilitating plant growth, development, oxidative stress resistance, and nutrient absorption into plants. It is unknown whether leaf and bract cell endosymbioses are significant in increasing the nitrogen content of plants. From the experiments that we conducted, it is impossible to know whether plant trichomes evolved specifically as organs for nitrogen fixation or if, instead, trichomes are structures in which bacteria easily colonize and where some casual nitrogen transfer may occur between bacteria and plant cells. It is likely that the endosymbioses seen in leaves and bracts are less efficient than those of root nodules of legumes in similar plants. However, the presence of endosymbioses that yield nitrate in plants could confer a reduced need for soil nitrogen and constitute increased nitrogen-use efficiency, even if the actual amount of nitrogen transferred to plant cells is small. More research is needed to evaluate the importance of nitrogen transfer within leaf and bract cells of plants

Biology↗

USGS2022

Confirmation that eagle fatalities can be reduced by automated curtailment of wind turbines

Automated curtailment is potentially a powerful technique to reduce collision mortality of wildlife with wind turbines. Previously, we used a before–after–control–impact framework to demonstrate that eagle fatalities declined after automated curtailment was implemented with the IdentiFlight system at a wind power facility in Wyoming, USA. We received substantial interest and feedback regarding our study and, here, we implement several analytical suggestions and include more recent data that strengthen the inference we draw from our results. The five main analytical suggestions we received were to (1) exclude from analysis data that were collected during the period when automated curtailment was only partially implemented; (2) only analyse data from a single make and model of turbine; (3) evaluate changes in the rate of fatality, instead of the yearly numbers of fatalities that result from fluctuations around that rate; (4) calculate a standard measure determining effects of a treatment in a before–after–control–impact study and (5) examine yearly fluctuations of the fatality rate during the before period. After incorporating these suggestions and including additional data collected since the prior paper was published, our results confirm prior work. We demonstrate that eagle fatalities were reduced by 85% (95% highest density interval = 12%, 100%) after implementation of automated curtailment. Rate of fatalities declined by 2.85 eagles per year (−0.67, 5.70) between before and after periods at the treatment site and increased by 2.26 eagles per year (−1.77, 7.37) at the control site. Overall, the fatality rate declined by 4.91 (−0.27, 11.27) more eagles per year at the treatment site than at the control site. The probability that the fatality rate declined at the treatment site relative to the control site was 0.97. Our re-analysis strengthens our inference by using more robust analyses and data to support the conclusions of the prior study suggesting that automated curtailment was effective at reducing eagle fatalities at our treatment site. Because of the site- and species-specific nature of our work, future research should examine the efficacy of automated curtailment at other sites, with other species, and under different curtailment regimes.

Ecological Solutions and Evidence↗

USGS2024

Accounting for missing ticks: Use (or lack thereof) of hierarchical models in tick ecology studies

Ixodid (hard) ticks play important ecosystem roles and have significant impacts on animal and human health via tick-borne diseases and physiological stress from parasitism. Tick occurrence, abundance, activity, and key life-history traits are highly influenced by host availability, weather, microclimate, and landscape features. As such, changes in the environment can have profound impacts on ticks, their hosts, and the spread of diseases. Researchers recognize that spatial and temporal factors influence activity and abundance and attempt to account for both by conducting replicate sampling bouts spread over the tick questing period. However, common field methods notoriously underestimate abundance, and it is unclear how (or if) tick studies model the confounding effects of factors influencing activity and abundance. This step is critical as unaccounted variance in detection can lead to biased estimates of occurrence and abundance. We performed a descriptive review to evaluate the extent to which studies account for the detection process while modeling tick data. We also categorized the types of analyses that are commonly used to model tick data. We used hierarchical models (HMs) that account for imperfect detection to analyze simulated and empirical tick data, demonstrating that inference is muddled when detection probability is not accounted for in the modeling process. Our review indicates that only 5 of 412 (1 %) papers explicitly accounted for imperfect detection while modeling ticks. By comparing HMs with the most common approaches used for modeling tick data (e.g., ANOVA), we show that population estimates are biased low for simulated and empirical data when using non-HMs, and that confounding occurs due to not explicitly modeling factors that influenced both detection and abundance. Our review and analysis of simulated and empirical data shows that it is important to account for our ability to detect ticks using field methods with imperfect detection. Not doing so leads to biased estimates of occurrence and abundance which could complicate our understanding of parasite-host relationships and the spread of tick-borne diseases. We highlight the resources available for learning HM approaches and applying them to analyzing tick data.

Maine↗

USGS2024

State of the data: Assessing the FAIRness of USGS data

In response to recent shifts towards open science that emphasize transparency, reproducibility, and access to research data, the US Geological Survey (USGS) conducted a study to assess the degree to which USGS data assets meet the FAIR data principles (Findable, Accessible, Interoperable, and Reusable). The USGS designed and applied a methodology for quantitative analysis of FAIR characteristics. A new rubric was derived from a crosswalk of existing FAIR evaluation frameworks and customized for the USGS. The rubric, consisting of 62 yes/no questions, was applied to 392 metadata records of USGS data products published between 1987 and 2022. Results were analyzed to show which FAIR characteristics were most and least present in the metadata and how these scores changed after the implementation of data policy requirements in 2016. Aggregated scores showed specific areas of strength and needed improvements. The greatest increases in FAIR scores over time were for elements that were required by new data policies, especially in the ‘Findable’ category. Based on the results, this paper presents strategies to further improve USGS alignment with FAIR. The suggested strategies are organized in four key areas: USGS data repository characteristics, training and communities of practice, data management policy considerations, and metadata standards, tools, and best practices.

Data Science Journal↗

USGS2025

40Ar/39Ar geochronology supporting mineral resources research at USGS Denver

The 40 Ar/ 39 Ar geochronology method is used to date potassium-bearing rocks and minerals, based on the decay of 40 K to 40 Ar, which provides important temporal constraints for geological events. The USGS Denver Argon Geochronology Laboratory dates samples from a variety of projects, mainly in the USGS Mineral Resource Program and the National Cooperative Geologic Mapping Program, facilitating in-depth research into the timing of geological events and processes. Recent applications of this method include geochronological studies in the Yellow Pine district, revealing mineralization ages that range from 51 to 70 Ma, and investigations into the Bear Lodge alkaline complex, providing insights into the timing of REE carbonatite formation. Additionally, studies at Alunite Ridge highlight the method's potential for understanding concealed mineral deposits. Ongoing projects continue to leverage 40 Ar/ 39 Ar data to enhance understanding of geologic frameworks and mineral resources, underpinning its importance in modern geochronology and mineral resource assessment.

Conference Paper↗

USGS2003

The challenge of archiving and preserving remotely sensed data

Few would question the need to archive the scientific and technical (S&T) data generated by researchers. At a minimum, the data are needed for change analysis. Likewise, most people would value efforts to ensure the preservation of the archived S&T data. Future generations will use analysis techniques not even considered today. Until recently, archiving and preserving these data were usually accomplished within existing infrastructures and budgets. As the volume of archived data increases, however, organizations charged with archiving S&T data will be increasingly challenged (U.S. General Accounting Office, 2002). The U.S. Geological Survey has had experience in this area and has developed strategies to deal with the mountain of land remote sensing data currently being managed and the tidal wave of expected new data. The Agency has dealt with archiving issues, such as selection criteria, purging, advisory panels, and data access, and has met with preservation challenges involving photographic and digital media. That experience has allowed the USGS to develop management approaches, which this paper outlines.

Data Science Journal↗

USGS2003

Coastal-change and glaciological map of the Bakutis Coast, Antarctica: 1972-2002

Changes in the area and volume of the polar ice sheets are intricately linked to changes in global climate, and the resulting changes in sea level may severely impact the densely populated coastal regions on Earth. Loss of the West Antarctic part of the Antarctic ice sheet alone could cause a sea-level rise of approximately 6 m. The potential sea-level rise after melting of the entire Antarctic ice sheet is estimated to be 65 m to 73 m. In spite of its importance, the mass balance (the net volumetric gain or loss) of the Antarctic ice sheet is poorly known; it is not known whether the ice sheet is growing or shrinking. As a result, measurement of changes in the Antarctic ice sheet was given a very high priority in recommendations by the Polar Research Board of the National Research Council (1986), by the Scientific Committee on Antarctic Research (SCAR) (1989), and by the National Science Foundation's (1990) Division of Polar Programs. An archive of early 1970's Landsat 1, 2, and 3 Multispectral Scanner (MSS) images of Antarctica and the fact that the repeat coverage with satellite images provided an excellent means of documenting changes in the coastline of Antarctica provided the impetus for carrying out a comprehensive analysis of the glaciological features of the coastal regions and changes in ice fronts of Antarctica. The project was later modified to include Landsat 4 and 5 MSS and Thematic Mapper (TM) and RADARSAT images to compare changes over a 20- to 25- year time interval and to prepare a series of 24 1:1,000,000-scale and 1 1:5,000,000-scale U.S. Geological Survey Geologic Investigations Series Maps ('I-Maps') (Williams and others, 1995; Williams and Ferrigno, 1998; and Ferrigno and others, 2002) in both paper and digital format.

IMAP↗

USGS1997

Coastal-change and glaciological map of the Bakutis Coast, Antarctica

IMAP↗

USGS2006

Applications of GIS and database technologies to manage a Karst Feature Database

This paper describes the management of a Karst Feature Database (KFD) in Minnesota. Two sets of applications in both GIS and Database Management System (DBMS) have been developed for the KFD of Minnesota. These applications were used to manage and to enhance the usability of the KFD. Structured Query Language (SQL) was used to manipulate transactions of the database and to facilitate the functionality of the user interfaces. The Database Administrator (DBA) authorized users with different access permissions to enhance the security of the database. Database consistency and recovery are accomplished by creating data logs and maintaining backups on a regular basis. The working database provides guidelines and management tools for future studies of karst features in Minnesota. The methodology of designing this DBMS is applicable to develop GIS-based databases to analyze and manage geomorphic and hydrologic datasets at both regional and local scales. The short-term goal of this research is to develop a regional KFD for the Upper Mississippi Valley Karst and the long-term goal is to expand this database to manage and study karst features at national and global scales.

Journal of Cave and Karst Studies↗

USGS2020

Scientist’s guide to developing explanatory statistical models using causal analysis principles

Recent discussions of model selection and multimodel inference highlight a general challenge for researchers, which is how to clearly convey the explanatory content of a hypothesized model or set of competing models. The advice from statisticians for scientists employing multimodel inference is to develop a well‐thought‐out set of candidate models for comparison, though precise instructions for how to do that are typically not given. A coherent body of knowledge, which falls under the general term causal analysis, now exists for examining the explanatory scientific content of candidate models. Much of the literature on causal analysis has been recently developed and we suspect may not be familiar to many ecologists. This body of knowledge comprises a set of graphical tools and axiomatic principles to support scientists in their endeavors to create “well‐formed hypotheses”, as statisticians are asking them to do. Causal analysis is complementary to methods such as structural equation modeling, which provides the means for evaluation of proposed hypotheses against data. In this paper, we summarize and illustrate a set of principles that can guide scientists in their quest to develop explanatory hypotheses for evaluation. The principles presented in this paper have the capacity to close the communication gap between statisticians, who urge scientists to develop well‐thought‐out coherent models, and scientists, who would like some practical advice for exactly how to do that.

Ecology↗