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Relating carbon and nitrogen isotope effects to reaction mechanisms during aerobic or anaerobic degradation of RDX (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine) by pure bacterial cultures

Kinetic isotopic fractionation of carbon and nitrogen during RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine) biodegradation was investigated with pure bacterial cultures under aerobic and anaerobic conditions. Relatively large bulk enrichments in 15 N were observed during biodegradation of RDX via anaerobic ring cleavage (ε 15 N = −12.7‰ ± 0.8‰) and anaerobic nitro reduction (ε 15 N = −9.9‰ ± 0.7‰), in comparison to smaller effects during biodegradation via aerobic denitration (ε 15 N = −2.4‰ ± 0.2‰). 13 C enrichment was negligible during aerobic RDX biodegradation (ε 13 C = −0.8‰ ± 0.5‰) but larger during anaerobic degradation (ε 13 C = −4.0‰ ± 0.8‰), with modest variability among genera. Dual-isotope ε 13 C/ε 15 N analyses indicated that the three biodegradation pathways could be distinguished isotopically from each other and from abiotic degradation mechanisms. Compared to the initial RDX bulk δ 15 N value of +9‰, δ 15 N values of the NO 2 − released from RDX ranged from −7‰ to +2‰ during aerobic biodegradation and from −42‰ to −24‰ during anaerobic biodegradation. Numerical reaction models indicated that N isotope effects of NO 2 − production were much larger than, but systematically related to, the bulk RDX N isotope effects with different bacteria. Apparent intrinsic ε 15 N-NO 2 − values were consistent with an initial denitration pathway in the aerobic experiments and more complex processes of NO 2 − formation associated with anaerobic ring cleavage. These results indicate the potential for isotopic analysis of residual RDX for the differentiation of degradation pathways and indicate that further efforts to examine the isotopic composition of potential RDX degradation products (e.g., NO x ) in the environment are warranted.

Applied and Environmental Microbiology↗

Impact breccias in carbonate rocks, Sierra Madera, Texas

Two main types of deformational breccia occur in the Sierra Madera cryptoexplosion structure: monolithologic breccias composed of shattered rock of a single lithology and mixed breccias composed of rocks of several lithologies. Monolithologic breccias generally show no mineralogic signs of shock deformation, but a few samples are shatter-coned in a manner suggesting simultaneous formation of breccias and shatter cones. Mixed breccias, forming irregular, cross-cutting bodies, consistently contain moderately to highly shocked material, with mineralogic evidence of shock pressures of 50 kb to more than 200 kb, which, with evidence from the structural geometry of Sierra Madera and orientation of shatter cones, indicate an impact origin of the breccias. The mode of occurrence of the breccias, petrographic characteristics, and association with shock features are shared by breccias in many other cryptoexplosion structures in both carbonate and crystalline rock terranes, suggesting that such breccias have a common origin.

Texas↗

Recognizing the Albian-Cenomanian (OAE1d) sequence boundary using plant carbon isotopes: Dakota Formation, Western Interior Basin, USA

Analysis of bulk sedimentary organic matter and charcoal from an Albian-Cenomanian fluvial-estuarine succession (Dakota Formation) at Rose Creek Pit (RCP), Nebraska, reveals a negative excursion of ???3???, in late Albian strata. Overlying Cenomanian strata have ??13C values of -24???, to -23???, that are similar to pre-excursion values. The absence of an intervening positive excursion (as exists in marine records of the Albian-Cenomanian boundary) likely results from a depositional hiatus. The corresponding positive ??13C event and proposed depositional hiatus are concordant with a regionally identified sequence boundary in the Dakota Formation (D2), as well as a major regressive phase throughout the globe at the Albian-Cenomanian boundary. Data from RCP confirm suggestions that some positive carbon-isotope excursions in the geologic record are coincident with regressive sea-level phases. We estimate using isotopic correlation that the D2 sequence boundary at RCP was on the order of 0.5 m.y. in duration. Therefore, interpretations of isotopic events and associated environmental phenomena, such as oceanic anoxic events, in the shallow-marine and terrestrial record may be influenced by stratigraphic incompleteness. Further investigation of terrestrial ??13C records may be useful in recognizing and constraining sea-level changes in the geologic record. ?? 2006 Geological Society of America.

Geology↗

Sedimentology and hydrodynamic implications of a coarse-grained hurricane sequence in a carbonate reef setting

Storms and associated surges are major coast-shaping processes. Nevertheless, no typical sequences for storm surge deposits in different coastal settings have been established. This study interprets a coarse-grained hurricane ridge deposit on the island of Bonaire, Netherlands Antilles. The sequence was deposited during Hurricane Lenny in November 1999. Insight is gained into the hydrodynamics of surge flow by interpreting textural trends, particle imbrication, and deposit geometry. Vertical textural variations, caused by time-dependent hydrodynamic changes, were used to subdivide the deposit into depositional units that correspond to different stages of the surge, such as setup, peak, and return flow. Particle size and imbrication trends and geometry of the units reflect landward bed-load transport of components during the setup, a nondirectional flow with sediment falling out of suspension during the peak, and a seaward bedload transport during the return flow. Formation of a ridge during setup affected the texture of the return flow unit. Changing angles of imbrication reflect alternating flow velocities during each phase. Normal grading during setup and inverse grading during return flow are caused by decelerating and accelerating flow, respectively. Hence, the interpreted deposit seems to represent the first described complete hurricane surge sequence from a carbonate environment. ?? 2009 Geological Society of America.

Geology↗

Shaken and stirred: Seismic evidence of Chicxulub impact effects on the West Florida carbonate platform, Gulf of Mexico

A grid of 33 seismic reflection profiles collected on the West Florida Shelf (Gulf of Mexico) reveals evidence of impact-induced seismic shaking and subsequent erosion of the Upper Cretaceous Selma–Pine Key depositional sequence across a wide region (∼102.3 × 10 3 km 2 ) of the buried Cretaceous carbonate platform. These attributes can be traced from outcrops at the Florida Escarpment to locations as far as ∼300 km into the interior of the platform. This evidence suggests a platform-interior provenance for much of the massive Chicxulub impact deposit that borders the base of the Florida Escarpment and adjacent northern Gulf of Mexico continental slope. This report opens a new window on the widespread destructive power of seismic energy released by large bolides striking shallow continental shelves.

Gulf of Mexico↗

Recognition and significance of Late Devonian fluvial, estuarine, and mixed siliciclastic-carbonate nearshore marine environments in the San Juan Mountains (southwestern Colorado, U.S.A.): Multiple incised valleys backfilled by lowstand and transgressive system tracts

The Upper Devonian Ignacio Formation (as stratigraphically revised) comprises a transgressive, tide-dominated estuarine depositional system in the San Juan Mountains (Colorado, USA). The unit backfills at least three bedrock paleovalleys (10–30 km wide and ≥42 m deep) with a consistent stratigraphy of tidally influenced fluvial, bayhead-delta, central estuarine-basin, mixed tidal-flat, and estuarine-mouth tidal sandbar deposits. Paleovalleys were oriented northwest while longshore transport was to the north. The deposits represent Upper Devonian lowstand and transgressive systems tracts. The overlying Upper Devonian Elbert Formation (upper member) consists of geographically extensive tidal-flat deposits and is interpreted as mixed siliciclastic-carbonate bay-fill facies that represents an early highstand systems tract. Stratigraphic revision of the Ignacio Formation includes reassigning the basal conglomerate to the East Lime Creek Conglomerate, recognizing an unconformity separating these two units, and incorporating strata previously mapped as the McCracken Sandstone Member (Elbert Formation) into the Ignacio Formation. The Ignacio Formation was previously interpreted as Cambrian, but evidence that it is Devonian includes reexamined fossil data and detrital zircon U-Pb geochronology. The Ignacio Formation has a stratigraphic trend of detrital zircon ages shifting from a single ca. 1.7 Ga age peak to bimodal ca. 1.4 Ga and ca. 1.7 Ga age peaks, which represents local source-area unroofing history. Specifically, the upper plate of a Proterozoic thrust system (ca. 1.7 Ga Twilight Gneiss) was eroded prior to exposure of the lower plate (ca. 1.4 Ga Uncompahgre Formation). These results are a significant alternative interpretation of the geologic history of the southern Rocky Mountains.

Colorado↗

Calcium-Carbonate hardness of public water supplies in the conterminous United States

Geographic variations in the hardness of water seem to parallel the geographic variations in certain cardiovascular diseases (Anderson and others, 1969; Biorck and others, 1965; Schroeder, 1966). Winton and McCabe (1970) have provided a recent review of the problem. The map, presented here, showing calcium-carbonate hardness of municipal raw-water sources in the conterminous United States has been compiled to provide data for further examination of correlations between water hardness and cardiovascular diseases.

Book chapter↗

Experimental whole-lake dissolved organic carbon increase alters fish diet and density but not growth or productivity

Negative relationships between dissolved organic carbon (DOC) concentration and fish productivity have been reported from correlative studies across lakes, but to date there have not been experimental tests of these relationships. We increased the DOC concentration in a lake by 3.4 mg L-1, using a before-after control-impact (BACI) design, to quantify the effects on the productivity and population structure of Largemouth Bass (Micropterus salmoides). Greater DOC reduced the volume of the epilimnion, the preferred habitat of Largemouth Bass, resulting in increased bass density. The likelihood that adult bass had empty diets decreased despite this increase in bass density; diet composition also changed. There was no apparent change in bass growth or condition. Overall, there was no net change in Largemouth Bass productivity. However, changes in YOY and juvenile recruitment and feeding success suggest the possibility that future effects could occur. Our results are the first to examine the effects of an increase in DOC on fish productivity through a five-year temporal lens, which demonstrates that the relationship between DOC and fish productivity is multi-dimensional and complex.

Canadian Journal of Fisheries and Aquatic Sciences↗

Decreased water transparency of nearshore Laurentian Great Lakes habitats is driven by increased dissolved organic carbon.

Little is understood of lake browning (due to increased dissolved organic carbon; DOC) in large lakes such as the Laurentian Great Lakes. Lake browning can alter whole lake ecosystems, including decreasing exposure to damaging ultraviolet radiation (UV-B) which is strongly and selectively attenuated by DOC more so than photosynthetically active radiation (PAR). We compared the changes in UV-B and PAR transparency to DOC data collected during the ice-free seasons from 62 nearshore sites in four of the five Great Lakes from 2002 to 2022 using linear mixed effects regression models based on backwards selected Bayesian information criteria. Regionally, DOC significantly increased from 2002 to 2022 by 0.5% per year on average. DOC strongly and inversely explained the variability of UV-B and PAR transparencies, as did seasons and offshore influence on these habitats. We provide regional evidence of lake browning within the nearshore habitats of the Great Lakes as a strong contrast to the well-documented increased offshore water transparency associated with the spread of invasive dreissenid mussels.

Great Lakes↗

Soil respiration and photosynthetic uptake of carbon dioxide by ground-cover plants in four ages of jack pine forest

Soil carbon dioxide (CO2) emission (soil respiration), net CO2 exchange after photosynthetic uptake by ground-cover plants, and soil CO2 concentration versus depth below land surface were measured at four ages of jack pine (Pinus banksiana Lamb.) forest in central Saskatchewan. Soil respiration was smallest at a clear-cut site, largest in an 8-year-old stand, and decreased with stand age in 20-year-old and mature (60-75 years old) stands during May-September 1994 (12.1, 34.6, 31.5, and 24.9 mol C??m-2, respectively). Simulations of soil respiration at each stand based on continuously recorded soil temperature were within one standard deviation of measured flux for 48 of 52 measurement periods, but were 10%-30% less than linear interpolations of measured flux for the season. This was probably due to decreased soil respiration at night modeled by the temperature-flux relationships, but not documented by daytime chamber measurements. CO2 uptake by ground-cover plants ranged from 0 at the clear-cut site to 29, 25, and 9% of total growing season soil respiration at the 8-year, 20-year, and mature stands. CO2 concentrations were as great as 7150 ppmv in the upper 1 m of unsaturated zone and were proportional to measured soil respiration.

Canadian Journal of Forest Research↗

Littoral zones as sources of biodegradable dissolved organic carbon in lakes

A survey of 12 lakes in Minnesota, USA, was conducted to examine the factors controlling variability in biodegradable dissolved organic carbon (BDOC) concentration. The principal question addressed was whether BDOC concentration was more strongly related to lake trophic status or morphometric parameters. BDOC concentration was determined by incubating filtered lake water for a period of 15 months and fitting an exponential decay curve to measured DOC concentrations. BDOC concentrations varied from 73 to 427 mmol C.L-1 and composed 15%-63% of the total DOC pool. There were no significant correlations between BDOC and measures of lake trophic status. Instead, BDOC was most closely associated with the percentage of lake area covered by littoral zone, suggesting a significant source of BDOC from aquatic macrophytes and lake surface sediments. ?? 2008 NRC.

Canadian Journal of Fisheries and Aquatic Sciences↗

Four centuries of soil carbon and nitrogen change after stand-replacing fire in a forest landscape in the western Cascade Range of Oregon

Episodic stand-replacing wildfire is a significant disturbance in mesic and moist Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) forests of the Pacific Northwest. We studied 24 forest stands with known fire histories in the western Cascade Range in Oregon to evaluate long-term impacts of stand-replacing wildfire on carbon (C) and nitrogen (N) pools and dynamics within the forest floor (FF, Oe and Oa horizons) and the mineral soil (0-10 cm). Twelve of our stands burned approximately 150 years ago ('young'), and the other 12 burned approximately 550 years ago ('old'). Forest floor mean C and N pools were significantly greater in old stands than young stands (N pools: 1823 ?? 132 kg??ha-1 vs. 1450 ?? 98 kg??ha -1; C pools: 62 980 ?? 5403 kg??ha-1 vs. 49 032 ?? 2965 kg??ha-1, mean ?? SE) as a result of significant differences in FF mass. Forest floor C and N concentrations and C/N ratios did not differ by time since fire, yet potential N mineralization rates were significantly higher in FF of old sites. Old and young mineral soils did not differ significantly in pools, concentrations, C/N ratios, or cycling rates. Our results suggest that C and N are sequestered in FF of Pacific Northwest Douglas-fir forests over long (???400 year) intervals, but that shorter fire return intervals may prevent that accumulation. ?? 2008 NRC.

Canadian Journal of Forest Research↗

Carbonate sediment transport across coral reefs: A comparison of fringing vs. barrier reefs

Considerable uncertainty remains in the budgets of carbonate sediment on reef lined coasts, particularly with respect to the supply of sediment to a reef flat that is then transported throughout a reef system. In this study, we re-examine two recent studies, one on a barrier reef bounded by channels that incise the reef, and one on a fringing reef without channels. Results indicate that the presence of channels results in a circulation regime that promotes not only the onshore sediment flux across the reef flat, but also upslope transport of sediment from the fore reef onto the reef flat. Data from these experiments suggest that when channels are present in the reef flat, the hydrodynamics of these reef systems favor the transport the transport of sediment up the fore reef. This outcome has implications for the design of potential reef restoration efforts intended to protect shorelines.

Conference Paper↗

Archaeal diversity and CO2 fixers in carbonate-/siliciclastic-rock groundwater ecosystems

Groundwater environments provide habitats for diverse microbial communities, and although Archaea usually represent a minor fraction of communities, they are involved in key biogeochemical cycles. We analysed the archaeal diversity within a mixed carbonate-rock/siliciclastic-rock aquifer system, vertically from surface soils to subsurface groundwater including aquifer and aquitard rocks. Archaeal diversity was also characterized along a monitoring well transect that spanned surface land uses from forest/woodland to grassland and cropland. Sequencing of 16S rRNA genes showed that only a few surface soil-inhabiting Archaea were present in the groundwater suggesting a restricted input from the surface. Dominant groups in the groundwater belonged to the marine group I (MG-I) Thaumarchaeota and the Woesearchaeota. Most of the groups detected in the aquitard and aquifer rock samples belonged to either cultured or predicted lithoautotrophs (e.g., Thaumarchaeota or Hadesarchaea). Furthermore, to target autotrophs, a series of 13 CO 2 stable isotope-probing experiments were conducted using filter pieces obtained after filtration of 10,000 L of groundwater to concentrate cells. These incubations identified the SAGMCG Thaumarchaeota and Bathyarchaeota as groundwater autotrophs. Overall, the results suggest that the majority of Archaea on rocks are fixing CO 2 , while archaeal autotrophy seems to be limited in the groundwater.

Archaea↗

Diagenetic palaeotemperatures from aqueous fluid inclusions: re-equilibration of inclusions in carbonate cements by burial heating

Diagenetic palaeotemperatures determined from aqueous fluid inclusions can be affected by re-equilibration during burial heating. Calculations based on the observed behaviour of inclusions in fluorite under external confining pressure allows prediction of the temperatures and depths of burial necessary to initiate re-equilibration of aqueous inclusions in the common size range 40 to 4 µm. Heating of 20° to 60°C over the initial trapping temperature may cause errors of 10° to 20°C in the homogenization temperature. This suggests re-equilibration may cause aqueous inclusions in carbonates to yield a poor record of their low-temperature history, but a useful record of the maximum temperature experienced by the host rock. Previous work suggests inclusions containing petroleum fluids will be less susceptible to re-equilibration.

Mineralogical Magazine↗

Characterisation of carbon nanotubes in the context of toxicity studies

Nanotechnology has the potential to revolutionise our futures, but has also prompted concerns about the possibility that nanomaterials may harm humans or the biosphere. The unique properties of nanoparticles, that give them novel size dependent functionalities, may also have the potential to cause harm. Discrepancies in existing human health and environmental studies have shown the importance of good quality, well-characterized reference nanomaterials for toxicological studies. Here we make a case for the importance of the detailed characterization of nanoparticles, using several methods, particularly to allow the recognition of impurities and the presence of chemically identical but structurally distinct phases. Methods to characterise fully, commercially available multi-wall carbon nanotubes at different scales, are presented.

Environmental Health↗

4D seismic to image a thin carbonate reservoir during a miscible CO2 flood: Hall-Gurney Field, Kansas, USA

Time-lapse (TL) seismic monitoring has proven a valuable tool for reservoir management. If available in a timely and cost-effective manner, it can be incorporated into a dynamic reservoir management approach, spec-ifically in terms of assessing sweep efficiency through constraining reservoir simulations, quantifying compartmentalization, and enhancing the placement of infill wells. Thus, cost-effectiveness, rapid turnaround time, and sensitivity of the seismic response to subtle changes in reservoir properties evident in production data are critical assets of a robust and economic TL application. Successful applications of TL monitoring have been predominantly offshore—Gulf of Mexico and North Sea—in thick clastic reservoirs characterized as low technical risk. Changes in TL seismic images as a direct result of enhanced oil recovery operations in low compressibility, “stiff” carbonate reservoirs are so small that distinguishing reservoir fluid changes from background noise on seismic attribute maps is challenging at best and many times impossible. Consequently, reservoirs predicted to produce weak TL anomalies associated with enhanced oil recovery (EOR) operations are classified as high-risk cases and languish in what has been designated the “stretch portfolio” of time-lapse application in reservoir management.

Kansas↗

Status of tidal marsh mapping for blue carbon inventories

Remote-sensing-based maps of tidal marshes, both of their extents and carbon stocks, will play a key role in conducting greenhouse gas (GHG) inventories. The U.N. Environment Programme World Conservation Monitoring Centre has produced a new Global Distribution of Salt Marsh dataset that estimates global salt marsh area at 5.5 Mha. A Tier 1–2 GHG Inventory of U.S. Coastal Wetlands has been developed using the NOAA Coastal-Change Analysis Program Landsat-based land cover maps as a primary dataset. 180Successful mapping of tidal marsh biomass with optical satellite images provides opportunity to improve GHG Inventories. Further work is needed to map tidal marsh salinity gradients, the extent of tidal vs. non-tidal marshes, methane emissions, and high-resolution elevation.

Book chapter↗