[Book review] Quality Planning for the Life Science Researcher: Meeting Quality Assurance Requirements, by Amy Cross-Smiecinski and Linda D. Stetzenbach
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Journal of Wildlife Management↗
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[Book review] Hoffmeister, D. F. Mammals of Arizona
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Journal of Wildlife Management↗
Multistate survival models and their extensions in Program MARK
Program MARK provides .100 models for the estimation of population parameters from mark?encounter data. The multistate model of Brownie et al. (1993) and Hestbeck et al. (1991) allows animals to move between states with a probability of transition. The simplest multistate model is an extension of the Cormack?Jolly?Seber (CJS) live recapture model. arameters estimated are state-specific survival rates and encounter probabilities and transition probabilities between states. The multistate model provides a valuable framework to evaluate important ecological questions. For example, estimation of state-specific survival and transition probabilities between the biological states of breeders and nonbreeders allows estimation of the cost of reproduction. Transitions between physical states, such as spatial areas, provide estimates needed for meta-population models. The basic multistate model uses only live recaptures, but 3 extensions are included in MARK. A multistate model with live and dead encounters is available, although the dead encounters are not state specific. Robust-design multistate models are also included in MARK, with both open and closed robust designs. These models assume that animals move between states only between primary sessions of the robust design. For the closed robust design, we can specify 12 different data types for the modeling of encounter probabilities during the primary session, including 6 versions of the closed model likelihood incorporating population size (N) directly in the likelihood, and 6 versions of the Huggins model in which N is estimated as a derived parameter outside the likelihood. One assumption that is generally necessary to estimate state-specific survival rates in the multistate model is that transitions take place immediately before encounter occasions. Otherwise, survival rates over the interval between encounter occasions are a mix of survival rates over multiple states. Advantages of using MARK to estimate the parameters of the various multistate models include flexibility of model specification to include group, time, and individual covariates, estimation of variance components, model averaging of parameter estimates, and Bayesian parameter estimation using Markov chain Monte Carlo procedures on the logit scale.
Journal of Wildlife Management↗
Combining Breeding Bird Survey and Christmas Bird Count data to evaluate seasonal components of population change in Northern Bobwhite
Annual surveys of wildlife populations provide information about annual rates of change in populations but provide no information about when such changes occur. However, by combining data from 2 annual surveys, conducted in different parts of the year, seasonal components of population change can be estimated. We describe a hierarchical model for simultaneous analysis of 2 continent-scale monitoring programs. The Christmas Bird Count is an early winter survey, whereas the North American Breeding Bird Survey is conducted in June. Combining information from these surveys permits estimation of seasonal population variance components and improves estimation of long-term population trends. The composite analysis also controls for survey-specific sampling effects. We applied the model to estimation of population change in northern bobwhites (Colinus virginianus). Over the interval 1969?2004, bobwhite populations declined, with trend estimate of -3.56% per year (95% CI = [-3.80%, -3.32%]) in the surveyed portion of their range. Our analysis of seasonal population variance components indicated that northern bobwhite populations changed more in the winter and spring portion of the year than in the summer and fall portion of the year.
Journal of Wildlife Management↗
Estimation and correction of visibility bias in aerial surveys of wintering ducks
Incomplete detection of all individuals leading to negative bias in abundance estimates is a pervasive source of error in aerial surveys of wildlife, and correcting that bias is a critical step in improving surveys. We conducted experiments using duck decoys as surrogates for live ducks to estimate bias associated with surveys of wintering ducks in Mississippi, USA. We found detection of decoy groups was related to wetland cover type (open vs. forested), group size (1?100 decoys), and interaction of these variables. Observers who detected decoy groups reported counts that averaged 78% of the decoys actually present, and this counting bias was not influenced by either covariate cited above. We integrated this sightability model into estimation procedures for our sample surveys with weight adjustments derived from probabilities of group detection (estimated by logistic regression) and count bias. To estimate variances of abundance estimates, we used bootstrap resampling of transects included in aerial surveys and data from the bias-correction experiment. When we implemented bias correction procedures on data from a field survey conducted in January 2004, we found bias-corrected estimates of abundance increased 36?42%, and associated standard errors increased 38?55%, depending on species or group estimated. We deemed our method successful for integrating correction of visibility bias in an existing sample survey design for wintering ducks in Mississippi, and we believe this procedure could be implemented in a variety of sampling problems for other locations and species.
Journal of Wildlife Management↗
Conserving waste rice for wintering waterfowl in the Mississippi Alluvial Valley
Rice lost before or during harvest operations (hereafter waste rice) provides important food for waterfowl in the Mississippi Alluvial Valley, USA, but >70% of waste rice is lost during autumn. We conducted experiments in 19 production rice fields in Arkansas and Mississippi during autumns 2003 and 2004 to evaluate the ability of common postharvest practices (i.e., burn, mow, roll, disk, or standing stubble) to conserve waste rice. We detected a postharvest treatment effect and a positive effect of initial abundance of waste rice on late-autumn abundance of waste rice (P < 0.022). Standing stubble contained the greatest abundance of waste rice followed by burned, mowed, rolled, and disked stubble. We recommend standing stubble or burning to maximize waste rice abundance for wintering waterfowl.
Journal of Wildlife Management↗
A double-observer method to estimate detection rate during aerial waterfowl surveys
We evaluated double-observer methods for aerial surveys as a means to adjust counts of waterfowl for incomplete detection. We conducted our study in eastern Canada and the northeast United States utilizing 3 aerial-survey crews flying 3 different types of fixed-wing aircraft. We reconciled counts of front- and rear-seat observers immediately following an observation by the rear-seat observer (i.e., on-the-fly reconciliation). We evaluated 6 a priori models containing a combination of several factors thought to influence detection probability including observer, seat position, aircraft type, and group size. We analyzed data for American black ducks (Anas rubripes) and mallards (A. platyrhynchos), which are among the most abundant duck species in this region. The best-supported model for both black ducks and mallards included observer effects. Sample sizes of black ducks were sufficient to estimate observer-specific detection rates for each crew. Estimated detection rates for black ducks were 0.62 (SE = 0.10), 0.63 (SE = 0.06), and 0.74 (SE = 0.07) for pilot-observers, 0.61 (SE = 0.08), 0.62 (SE = 0.06), and 0.81 (SE = 0.07) for other front-seat observers, and 0.43 (SE = 0.05), 0.58 (SE = 0.06), and 0.73 (SE = 0.04) for rear-seat observers. For mallards, sample sizes were adequate to generate stable maximum-likelihood estimates of observer-specific detection rates for only one aerial crew. Estimated observer-specific detection rates for that crew were 0.84 (SE = 0.04) for the pilot-observer, 0.74 (SE = 0.05) for the other front-seat observer, and 0.47 (SE = 0.03) for the rear-seat observer. Estimated observer detection rates were confounded by the position of the seat occupied by an observer, because observers did not switch seats, and by land-cover because vegetation and landform varied among crew areas. Double-observer methods with on-the-fly reconciliation, although not without challenges, offer one viable option to account for detection bias in aerial waterfowl surveys where birds are distributed at low density in remote areas that are inaccessible by ground crews. Double-observer methods, however, estimate only detection rate of animals that are potentially observable given the survey method applied. Auxiliary data and methods must be considered to estimate overall detection rate.
Journal of Wildlife Management↗
Survival of greater white-fronted geese: Effects of year, season, sex, and body condition
Information regarding the magnitude and variation in survival rates is necessary for understanding the causes of large changes in population size. We examined survival of greater white-fronted geese (Anser albifrons frontalis) in the Pacific Flyway during 1979-82. The population declined by 75% in the decade preceding our study but was stable during our investigation. Annual survival of adults (0.749, SE = 0.045) was 7% higher than during an earlier study. We developed a simple population model which suggests that recent (1985-96) survival rates may be as much as 10% higher in adults than the 1979-82 rate, which corresponds to population increases observed since 1985. Survival of adult females varied seasonally; monthly survival during a period of winter when no hunting or migration occurred was higher (0.986, SE = 0.015) than monthly survival at other times (0.964, SE = 0.006). Survival of adult males varied among years and with a general seasonal trend inverse to that for females. An index of body condition was positively related to survival of adult females in fall and spring, but not for adult males or immature geese. Monthly survival of immatures was lower during their first hunting season (0.886, SE = 0.026) than during all subsequent seasons (0.963, SE = 0.007). Annual survival of immatures beginning 1 October, immediately before the hunting season, was 0.471. Corresponding variations in survival rates, population numbers, and hunting regulations suggest that hunting may have influenced survival in this population of greater white-fronted geese.
Journal of Wildlife Management↗
Wild turkey poult survival in southcentral Iowa
Poult survival is key to understanding annual change in wild turkey (Meleagris gallopavo) populations. Survival of eastern wild turkey poults (M. g. silvestris) 0-4 weeks posthatch was studied in southcentral Iowa during 1994-97. Survival estimates of poults were calculated based on biweekly flush counts and daily locations acquired via radiotelemetry. Poult survival averaged 0.52 ?? 0.14% (?? ?? SE) for telemetry counts and 0.40 ?? 0.15 for flush counts. No within-year or across-year differences were detected between estimation techniques. More than 72% (n = 32) of documented poult mortality occurred ???14 days posthatch, and mammalian predation accounted for 92.9% of documented mortality. If mortality agents are not of concern, we suggest biologists conduct 4-week flush counts to obtain poult survival estimates for use in population models and development of harvest recommendations.
Journal of Wildlife Management↗
Book review of The Short-Tailed Fruit Bat: A Study in Plant-Animal Interactions, by T. H. Fleming
No abstract available.
Journal of Wildlife Management↗
Book review of America’s public lands: From Yellowstone to Smokey Bear and beyond (2nd edition)
Since the creation of the first public lands in the United States, they have been a source of turmoil, admiration, and prolonged political debate Nevertheless, our public lands have become an intrinsic part of our national identity and economic progress, exemplifying our divergent attitudes towards nature preservation and resource development. With this in mind, Randall K. Wilson makes a case for the value of our national lands in his book, America’s Public Lands: From Yellowstone to Smokey Bear and Beyond. In this second edition, Wilson aims to present the history, challenges, and complex issues surrounding these lands. This edition promises to keep guard of the present while recognizing and dissecting the past that has brought us to where we are.
Journal of Wildlife Management↗
Genetic analysis of scats reveals minimum number and sex of recently documented mountain lions
Recent records of mountain lions Puma concolor and concurrent declines in desert bighorn sheep Ovis canadensis mexicana on Kofa National Wildlife Refuge in Arizona, United States, have prompted investigations to estimate the number of mountain lions occurring there. We performed noninvasive genetic analyses and identified species, individuals, and sex from scat samples collected from the Kofa and Castle Dome Mountains. From 105 scats collected, we identified a minimum of 11 individual mountain lions. These individuals consisted of six males, two females and three of unknown sex. Three of the 11 mountain lions were identified multiple times over the study period. These estimates supplement previously recorded information on mountain lions in an area where they were historically considered only transient. We demonstrate that noninvasive genetic techniques, especially when used in conjunction with camera-trap and radiocollaring methods, can provide additional and reliable information to wildlife managers, particularly on secretive species like the mountain lion.
Arizona↗
Aquatic vegetation and invertebrate communities of Big Stone National Wildlife Refuge
Observed degradation of aquatic systems at Big Stone National Wildlife Refuge, located in west-central Minnesota, have been associated with sediment-laden inflows from riverine systems. To support management, a study was conducted during 2013–2014 with overall goals of characterizing the aquatic invertebrate and vegetation communities of the Big Stone National Wildlife Refuge and exploring relations between these communities and various water-quality parameters. Sample sites were located along an observed vegetation gradient and assigned to three predetermined habitat zones for comparison purposes: upstream, transition, and downstream. Of the 12 species of aquatic vegetation that were identified, invasive narrowleaf cattail Typha angustifolia dominated the upstream zone (observed at .90% of sample locations), coontail Ceratophyllum demersum and narrowleaf cattail were most common in the transition zone (collected or observed at 100 and 83% of sample locations, respectively), and coontail and narrowleaf pondweed Potamogeton strictifolius were most common in the downstream zone collected at 100 and 64% of sample locations, respectively). Measured values for the water-quality parameters varied among dates, reflecting the continually fluctuating nature of riverine systems. Based on general observations across sample dates, turbidity and dissolved oxygen concentrations were greatest in the upstream zone sample sites, while oxidation-reduction potential was greatest in the downstream zone sites. There were 115 unique aquatic invertebrate taxa identified to varying levels of taxonomic resolution. Results suggested that there were overall differences in invertebrate biomass among the sample dates, but that there were no strong trends among the sample zones. Aquatic invertebrates and vegetation communities, along with the water-quality parameters, varied temporally and showed irregular relations among the sample zones. These general observations emphasize the importance of temporally and spatially intensive sampling to account for natural variation. Moreover, short- and long-term streamflow and water-level information obtained for this study demonstrated substantial variability that must be considered when conducting biotic inventories and monitoring water quality, as well as when using such data to assess management options. Periodic monitoring of wetlands and associated streamflows, along with sediment loads and water quality of inflows, should allow Big Stone National Wildlife Refuge staff to identify habitat degradation and potential contributing factors, and to develop strategies to achieve specific management objectives and goals.
Minnesota↗
Lead exposure in waterfowl before contoxic shot requirements: A nationwide study, 1983−1986
Before implementing nontoxic shot requirements for hunting waterfowl and American coots Fulica americana in the United States in 1991, the U.S. Fish and Wildlife Service monitored lead poisoning in waterfowl on federal and state wildlife hunting areas during 1983-1986. Federal and state collaborators collected gizzards and livers from 9,029 hunter-killed waterfowl (10 species of dabbling ducks Anatinae , 9 diving ducks Aythyinae , 5 geese Anserinae , and tundra swans Cygnus columbianus ) across the four flyways. At the U.S. Fish and Wildlife Service National Wildlife Health Center, Madison, Wisconsin, waterfowl gizzards were examined for ingested lead and nontoxic shot and livers were analyzed for lead concentrations. Diving ducks had the greatest frequency (8.7%) of one or more ingested lead shot, followed by dabbling ducks (5.5%) and geese (1.3%). No ingested shot were found in tundra swans. The frequency of elevated (≥ 2.0 mg/kg wet weight) liver lead concentrations was also greatest in diving ducks, followed by dabbling ducks and geese. Within each species group, the frequency of elevated liver lead concentrations was greater than ingested lead shot, an indication that lead shot ingestion alone underrepresents lead exposure. Thus, lead in the liver may remain elevated after the erosion and excretion of lead pellets from the gizzard. Our results provide historical baseline data and summarize a nationwide study of lead exposure, using both ingested lead shot and liver lead concentrations, in waterfowl in the United States before the implementation of nontoxic shot regulations in 1991. These data can be compared with previous studies of lead exposure in waterfowl, as well as current and future assessments to evaluate the success of nontoxic shot regulations nationwide and specifically within previously sampled waterfowl management areas.
Journal of Fish and Wildlife Management↗
Annual survival rate estimate of satellite transmitter–marked eastern population greater sandhill cranes
Several surveys have documented the increasing population size and geographic distribution of Eastern Population greater sandhill cranes Grus canadensis tabida since the 1960s. Sport hunting of this population of sandhill cranes started in 2012 following the provisions of the Eastern Population Sandhill Crane Management Plan. However, there are currently no published estimates of Eastern Population sandhill crane survival rate that can be used to inform harvest management. As part of two studies of Eastern Population sandhill crane migration, we deployed solar-powered global positioning system platform transmitting terminals on Eastern Population sandhill cranes ( n = 42) at key concentration areas from 2009 to 2012. We estimated an annual survival rate for Eastern Population sandhill cranes from data resulting from monitoring these cranes by using the known-fates model in the MARK program. Estimated annual survival rate for adult Eastern Population sandhill cranes was 0.950 (95% confidence interval = 0.885–0.979) during December 2009–August 2014. All fatalities ( n = 5) occurred after spring migration in late spring and early summer. We were unable to determine cause of death for crane fatalities in our study. Our survival rate estimate will be useful when combined with other population parameters such as the population index derived from the U.S. Fish and Wildlife Service fall survey, harvest, and recruitment rates to assess the effects of harvest on population size and trend and evaluate the effectiveness of management strategies.
Journal of Fish and Wildlife Management↗
Relative value of managed wetlands and tidal marshlands for wintering northern pintails
Northern pintail Anas acuta (hereafter, pintail) populations have declined substantially throughout the western US since the 1970s, largely as a result of converting wetlands to cropland. Managed wetlands have been developed throughout the San Francisco Bay estuaries to provide wildlife habitat, particularly for waterfowl. Many of these areas were historically tidal baylands and plans are underway to remove dikes and restore tidal action. The relationship between tidal baylands and waterfowl populations is poorly understood. Our objective was to provide information on selection and avoidance of managed and tidal marshland by pintails. During 1991–1993 and 1998–2000, we radio-marked and relocated 330 female pintails (relocations, n =11,574) at Suisun Marsh, the largest brackish water estuary within San Francisco Bay, to estimate resource selection functions during the nonbreeding months (winter). Using a distance-based modeling approach, we calculated selection functions for different ecological communities (e.g., tidal baylands) and investigated variation explained by time of day (day or night hours) to account for differences in pintail behavior (i.e., foraging vs. roosting). We found strong evidence for selection of managed wetlands. Pintails also avoided tidal marshes and bays and channels. We did not detect differences in selection function between day and night hours for managed wetlands but the degree of avoidance of other habitats varied by time of day. We also found that areas subjected to tidal action did not influence the selection of immediately adjacent managed wetlands. If current management goals include providing habitat for wintering waterfowl populations, particularly pintail, then we recommend wildlife managers focus tidal restoration on areas that are not currently managed wetland and/or improve conditions in areas of managed wetlands to increase local carrying capacities
California↗
The type localities of the mule deer, Odocoileus hemionus (Rafinesque, 1817), and the Kansas white-tailed deer, Odocoileus virginianus macrourus (Rafinesque, 1817), are not where we thought they were
Among the iconic mammals of the North American West is the mule deer ( Odocoileus hemionus ). This species and a western subspecies of the white-tailed deer ( Odocoileus virginianus macrourus ) were two of seven mammals originally named and described as new species in 1817 by Constantine S. Rafinesque. Rafinesque never saw the animals that he named. Instead, he followed the then-acceptable practice of basing his new species on animals characterized in another published work, in this case the putative journal of Charles Le Raye, a French Canadian fur trader who was said to have traversed the upper Missouri River region before the Lewis and Clark Expedition and whose journal described some of the wildlife in detail. Unlike the mule deer, whose existence has been established by generations of biologists, wildlife management professionals, and sportsmen, Le Raye and his journal have since been proven to be fraudulent. Because Rafinesque's names were published in accordance with the taxonomic conventions of his time, they remain available, but, based on the questionable source of his descriptions, the identities and type localities of the species must be viewed as unreliable. Fortunately, much of the Le Raye journal was derived from other, verifiable contemporary sources. In particular, the descriptions of the two deer were based on the published journal of Patrick Gass, a member of the Lewis and Clark Expedition. Using the Gass journal as the original source of Rafinesque's descriptions, the type localities for the two deer can be reliably placed in Lyman County, South Dakota.
Proceedings of the Biological Society of Washingto↗