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At least 1,369 records · Page 76Linked to original sources

Aquatic bird disease and mortality as an indicator of changing ecosystem health

We analyzed data from pathologic investigations in the United States, collected by the USGS National Wildlife Health Center between 1971 and 2005, into aquatic bird mortality events. A total of 3619 mortality events was documented for aquatic birds, involving at least 633 708 dead birds from 158 species belonging to 23 families. Environmental causes accounted for the largest proportion of mortality events (1737 or 48%) and dead birds (437 258 or 69%); these numbers increased between 1971 and 2000, with biotoxin mortalities due to botulinum intoxication (Types C and E) being the leading cause of death. Infectious diseases were the second leading cause of mortality events (20%) and dead birds (20%), with both viral diseases, including duck plague ( Herpes virus ), paramyxovirus of cormorants ( Paramyxovirus PMV1) and West Nile virus ( Flavivirus ), and bacterial diseases, including avian cholera ( Pasteurella multocida ), chlamydiosis ( Chalmydia psittici ), and salmonellosis ( Salmonella sp.), contributing. Pelagic, coastal marine birds and species that use marine and freshwater habitats were impacted most frequently by environmental causes of death, with biotoxin exposure, primarily botulinum toxin, resulting in mortalities of both coastal and freshwater species. Pelagic birds were impacted most severely by emaciation and starvation, which may reflect increased anthropogenic pressure on the marine habitat from over-fishing, pollution, and other factors. Our study provides important information on broad trends in aquatic bird mortality and highlights how long-term wildlife disease studies can be used to identify anthropogenic threats to wildlife conservation and ecosystem health. In particular, mortality data for the past 30 yr suggest that biotoxins, viral, and bacterial diseases could have impacted >5 million aquatic birds.

Marine Ecology Progress Series↗

Climate and disturbance influence self-sustaining stand dynamics of aspen (Populus tremuloides) near its range margin

Species that are primarily seral may form stable (self-sustaining) communities under certain disturbance regimes or environmental conditions, yet such populations may also be particularly vulnerable to ecological change. Aspen (Populus spp.) are generally considered seral throughout the northern hemisphere, including P. tremuloides, the most widely distributed tree species in North America. Recent declines in aspen populations have occurred, especially along drought-sensitive margins of its range and where fire exclusion and herbivory have promoted community transition. However, aspen also forms stable stands, and examination of the mechanisms that influence persistence can offer conservation insights, especially where populations are vulnerable to changing climate or altered disturbance dynamics. We sampled tree age and stand characteristics of isolated aspen forests in the arid Great Basin (USA) to determine if: (1) aspen communities are more fire-dependent and seral or fire-independent and stable; (2) ungulate browsing inhibits aspen stability; and (3) temporal patterns of vegetative reproduction (i.e., ramet establishment or “suckering”) are correlated with climate. Aspen size and age class densities strongly fit negative exponential distributions, whether grouped geographically or by functional type, suggesting landscape-scale persistence. Continuous age distributions and high proportions of recruitment-sized to overstory trees suggest stability at stand-scales, with exceptions including stands with higher browsing pressure. Few stands had evidence of fire, and relationships between dead tree size and variability in live tree size suggest a lack of fire-dependency. Several five-year averaged climate variables and one sea surface temperature index were correlated with aspen ramet establishment densities over time, with strongest relationships occurring ~5 years prior to establishment year, often followed by inverse relationships ~1 year after. Indeed, aspen establishment density for a recent 41-year period was reliably reconstructed using antecedent climate conditions derived from a single drought index. Temporally synchronized aspen ramet establishment across the study region may be due to climate-driven storage of nonstructural carbohydrate reserves in clonal root systems later used for regeneration. Complex regeneration dynamics of these self-sustaining aspen stands, especially sensitivity to climate variability, suggest they may serve as harbingers of ecological change in the arid Great Basin and in other aspen populations near their range margin.

Ecological Applications↗

Balancing energy development and conservation: A method utilizing species distribution models

Alternative energy development is increasing, potentially leading to negative impacts on wildlife populations already stressed by other factors. Resource managers require a scientifically based methodology to balance energy development and species conservation, so we investigated modeling habitat suitability using Maximum Entropy to develop maps that could be used with other information to help site energy developments. We selected one species of concern, the Lesser Prairie-Chicken (LPCH; Tympanuchus pallidicinctus ) found on the southern Great Plains of North America, as our case study. LPCH populations have been declining and are potentially further impacted by energy development. We used LPCH lek locations in the state of Kansas along with several environmental and anthropogenic parameters to develop models that predict the probability of lek occurrence across the landscape. The models all performed well as indicated by the high test area under the curve (AUC) scores (all >0.9). The inclusion of anthropogenic parameters in models resulted in slightly better performance based on AUC values, indicating that anthropogenic features may impact LPCH lek habitat suitability. Given the positive model results, this methodology may provide additional guidance in designing future survey protocols, as well as siting of energy development in areas of marginal or unsuitable habitat for species of concern. This technique could help to standardize and quantify the impacts various developments have upon at-risk species.

Environmental Management↗

Quantitative PCR detection of endangered diamond darter Crystallaria Cincotta in environmental DNA: Employing locked nucleic acids and blocking probe for specificity

This study presents a quantitative PCR (qPCR) assay for the detection of the endangered diamond darter Crystallaria cincotta from environmental DNA (eDNA) in water samples. The assay design is based on an alignment of mitochondrial cytochrome b DNA sequences from 58 individuals representing 25 percid species. Leveraging genetic differences, a species-specific qPCR assay was designed, incorporating alocked nucleic acid (LNA)-enriched probe and a secondary blocking probe to enhance specificity. The assay targets a 93-base pair fragment that includes a diagnostic single nucleotide polymorphism in the probe region; combined with multiple primer mismatches, this provides specificity for distinguishing C. cincotta from other sympatric percid species. Specificity was validated by testing genomic DNA from 16 percid species and synthetic templates, confirming no cross-reactivity. Performance metrics, including the standard curve, qPCR efficiency, limit of detection, and limit of quantification, are reported. The qPCR assay exhibited sufficient sensitivity to detect C. cincotta eDNA in environmental water samples collected from occupied riverine habitats. This study illustrates the effectiveness of LNA-enriched and blocking probes in developing species-specific qPCR assays for eDNA applications, demonstrating their utility in accurately distinguishing closely related species within diverse fish communities.

Conservation Genetics Resources↗

Modeling amphibian energetics, habitat suitability, and movements of western toads, Anaxyrus (=Bufo) boreas, across present and future landscapes

Effective conservation of amphibian populations requires the prediction of how amphibians use and move through a landscape. Amphibians are closely coupled to their physical environment. Thus an approach that uses the physiological attributes of amphibians, together with knowledge of their natural history, should be helpful. We used Niche Mapper™ to model the known movements and habitat use patterns of a population of Western toads ( Anaxyrus (= Bufo ) boreas ) occupying forested habitats in southeastern Idaho. Niche Mapper uses first principles of environmental biophysics to combine features of topography, climate, land cover, and animal features to model microclimates and animal physiology and behavior across landscapes. Niche Mapper reproduced core body temperatures ( T c ) and evaporation rates of live toads with average errors of 1.6 ± 0.4 °C and 0.8 ± 0.2 g/h, respectively. For four different habitat types, it reproduced similar mid-summer daily temperature patterns as those measured in the field and calculated evaporation rates (g/h) with an average error rate of 7.2 ± 5.5%. Sensitivity analyses indicate these errors do not significantly affect estimates of food consumption or activity. Using Niche Mapper we predicted the daily habitats used by free-ranging toads; our accuracy for female toads was greater than for male toads (74.2 ± 6.8% and 53.6 ± 15.8%, respectively), reflecting the stronger patterns of habitat selection among females. Using these changing to construct a cost surface, we also reconstructed movement paths that were consistent with field observations. The effect of climate warming on toads depends on the interaction of temperature and atmospheric moisture. If climate change occurs as predicted, results from Niche Mapper suggests that climate warming will increase the physiological cost of landscapes thereby limiting the activity for toads in different habitats.

Idaho↗

Backcasting the decline of a vulnerable Great Plains reproductive ecotype: identifying threats and conservation priorities

Conservation efforts for threatened or endangered species are challenging because the multi-scale factors that relate to their decline or inhibit their recovery are often unknown. To further exacerbate matters, the perceptions associated with the mechanisms of species decline are often viewed myopically rather than across the entire species range. We used over 80 years of fish presence data collected from the Great Plains and associated ecoregions of the United States, to investigate the relative influence of changing environmental factors on the historic and current truncated distributions of the Arkansas River shiner Notropis girardi . Arkansas River shiner represent a threatened reproductive ecotype considered especially well adapted to the harsh environmental extremes of the Great Plains. Historic ( n = 163 records) and current ( n = 47 records) species distribution models were constructed using a vector-based approach in MaxEnt by splitting the available data at a time when Arkansas River shiner dramatically declined. Discharge and stream order were significant predictors in both models; however, the shape of the relationship between the predictors and species presence varied between time periods. Drift distance (river fragment length available for ichthyoplankton downstream drift before meeting a barrier) was a more important predictor in the current model and indicated river segments 375–780 km had the highest probability of species presence. Performance for the historic and current models was high (area under the curve; AUC > 0.95); however, forecasting and backcasting to alternative time periods suggested less predictive power. Our results identify fragments that could be considered refuges for endemic plains fish species and we highlight significant environmental factors (e.g., discharge) that could be manipulated to aid recovery.

Great Plains↗

Ground-water levels in Huron County, Michigan, 2002-03

In 1990, the U.S. Geological Survey (USGS) completed a study of the hydrogeology of Huron County, Michigan (Sweat, 1991). In 1993, Huron County and the USGS entered into a continuing agreement to collect water-level altitudes (hereafter referred to as water levels) at selected wells throughout Huron County. As part of the agreement, USGS has operated four continuous water-level recorders, installed from 1988 to 1991 on wells in Bingham, Fairhaven, Grant, and Lake Townships (fig. 1) and summarized the data collected in an annual or bi-annual report. The agreement was altered in 2003, and beginning January 1, 2004, only the wells in Fairhaven and Lake Townships will have continuous water-level recorders, while the wells in Grant and Bingham Townships will revert to quarterly measurement status. USGS has also provided training for County or Huron Conservation District personnel to measure the water level, on a quarterly basis, in 23 wells. USGS personnel regularly accompany County or Huron Conservation District personnel to provide a quality assurance/quality control check of all measurements being made. Water-level data collected from the 23 quarterly-measured wells is also summarized in the annual or bi-annual report. In 1998, the USGS also completed a temporal and spatial analysis of the monitoring well network in Huron County (Holtschlag and Sweat, 1998). The altitude of Lake Huron and precipitation are good indicators of general climatic conditions and, therefore, provide an environmental context for groundwater levels in Huron County. Figure 2 shows the mean-monthly water-level altitude of Lake Huron, averaged from measurements made by the U.S. Army Corps of Engineers at sites near Essexville and Harbor Beach, and monthly precipitation measured in Bad Axe (National Oceanic and Atmospheric Administration [NOAA], 2002-04; Danny Costello, NOAA hydrologist, written commun., 2003-04). In March 2003, a new low-water level for the period of this study was measured in Lake Huron (National Oceanic and Atmospheric Administration, 2003; 2004). The net decline in the water level of Lake Huron from January 1, 2002 to December 31, 2003 was about 0.3 ft. Annual precipitation in 2002 was about 0.3 inches above normal, with much of it occurring during summer months. The provisional precipitation total for 2003 is about an inch below normal (NOAA, 2003, 2004; Danny Costello, NOAA hydrologist, written commun., 2003, 2004). Four wells equipped with continuous-data recorders are completed in the glacial, Saginaw, and Marshall aquifers. Water levels in three of the four wells equipped with continuous-data recorders experienced a net decline over the period from January 2002 to December 2003, while the level in well H9r, completed in the Saginaw aquifer in Fairhaven Township adjacent to Saginaw Bay (Lake Huron), rose about 1.3 ft over the same period. Interestingly, the water level in Saginaw Bay declined about 0.3 ft over the same period. A period-ofrecord maximum depth to water was recorded in September 2003 in well H25Ar, completed in the Marshall aquifer in Lake Township. Hydrographs showing altitude of the water surface are presented for each of four wells equipped with continuous-data recorders. Twenty three wells were measured on a quarterly basis in 2002-03. These wells are completed in the Saginaw and Marshall aquifers, and Coldwater confining unit. Although each quarterly measurement only provides a “snapshot” water level, the data adequately define the “generalized” water-level trend in the aquifer near the well. The water level in one quarterly-measured well completed in the Saginaw aquifer near Saginaw Bay, had a net rise for the period from January 2002 to December 2003, while levels in the other 22 quarterly-measured wells declined about 0.5 to 2.0 ft during the same period. A period-of-record minimum depth to water (high) was measured in 2002 in two quarterly-measured wells completed in the Saginaw aquifer, although the level in one of those wells had a net decline over the period from January 2002 through December 2003. Conversely, period-of-record maximum depths to water (low) were measured in 2002 in one well completed in the Saginaw aquifer and two wells completed in the Marshall aquifer; and in 2003, in 6 of 16 wells completed in the Marshall aquifer. Near period-ofrecord maximum depths to water were measured in 2003 in two additional wells completed in the Marshall aquifer. No period-of-record minimum or maximum depths to water were measured in 2002-03 in wells completed in the Coldwater confining unit. Hydrographs showing water levels measured in each well are presented for the 23 wells measured on a quarterly basis. Water-level trends measured in 2002-03 in other wells in Lower Michigan have similarities to those measured in Huron County wells. Several external factors appear to influence water-level trends including proximity to nearby production wells, amount and timing of precipitation events, evapotranspiration and type of prevalent ground cover, proximity of aquifer to the surface, and hydraulic characteristics of overlying geologic materials.

Michigan↗

Use of stable isotope signatures to determine mercury sources in the Great Lakes

Sources of mercury (Hg) in Great Lakes sediments were assessed with stable Hg isotope ratios using multicollector inductively coupled plasma mass spectrometry. An isotopic mixing model based on mass-dependent (MDF) and mass-independent fractionation (MIF) (δ 202 Hg and Δ 199 Hg) identified three primary Hg sources for sediments: atmospheric, industrial, and watershed-derived. Results indicate atmospheric sources dominate in Lakes Huron, Superior, and Michigan sediments while watershed-derived and industrial sources dominate in Lakes Erie and Ontario sediments. Anomalous Δ 200 Hg signatures, also apparent in sediments, provided independent validation of the model. Comparison of Δ 200 Hg signatures in predatory fish from three lakes reveals that bioaccumulated Hg is more isotopically similar to atmospherically derived Hg than a lake’s sediment. Previous research suggests Δ 200 Hg is conserved during biogeochemical processing and odd mass-independent fractionation (MIF) is conserved during metabolic processing, so it is suspected even is similarly conserved. Given these assumptions, our data suggest that in some cases, atmospherically derived Hg may be a more important source of MeHg to higher trophic levels than legacy sediments in the Great Lakes.

Lake Erie, Lake Huron, Lake Michigan, Lake Ontario↗

A science and management partnership to restore coregonine diversity to the Laurentian Great Lakes

Similar to many freshwater ecosystems, the Laurentian Great Lakes of North America have undergone numerous anthropogenic stressors resulting in considerable loss of biodiversity and habitat. Among Great Lakes fishes, the coregonine sub-family has endured the most extensive declines, including extinction of several species ( Coregonus johannae, C. alpenae , and C. kiyi orientalis ) and at least 10 instances of local extirpations of other species ( C. nigripinnis, C. reighardi, C. zenithicus, C. hoyi , and C. artedi ) across all 5 lakes, much of which occurred prior to the 1960s owing to overfishing, interactions with non-indigenous species, and habitat loss. Despite these declines, no federal-, provincial-, or state-mandated actions were ever implemented to conserve coregonine diversity, potentially because so much of the coregonine declines occurred prior to the enactment of federal conservation legislation. Possible explanations for inaction since enactment of that legislation include insufficient data on biological vulnerability or threats, unresolved taxonomy, and limited support from the fishery management agencies and their stakeholders prior to the 2000s. In recent decades, however, several fishery management agencies have undertaken efforts to re-introduce coregonine diversity. These efforts helped lead to development of a science-based framework to restore coregonines that was universally endorsed by fishery managers representing eight U.S. states, four U.S. tribal organizations, and the province of ON, Canada, in May 2018. The basin-wide framework is based on principles of conservation biology and adaptive management. We describe details of its key steps, including planning, restoring, and evaluating, while also describing recent implementation efforts to develop methods, improve available resources, and enhance coordination across the basin. Although our paper describes a regional effort to restore native coregonines, our adaptive-management approach could be used by other multi-agency stakeholders seeking to conserve or restore native fishes.

Laurentian Great Lakes↗

Trail degradation as influenced by environmental factors: A state-of-the-knowledge review

Excerpt: Human use and misuse of land has been causing extensive degradation of the very natural resources on which we depend. National parks, wilderness and other protected natural or semi-natural areas (referred to as natural areas hereafter) represent efforts to preserve our natural heritage from further exploitation. Such areas also provide outstanding recreational, research, and educational opportunities. However, resource impacts resulting from overuse and inappropriate management increasingly threaten these protected areas and erode their natural and cultural values. Among the many forms of recreational impact, those associated with trail development and use are often a major concern of natural area managers and visitors. Such impacts impair and degrade the functions that trails serve, including (1) protecting resources by concentrating traffic on a hardened tread, (2) providing recreational opportunities along aesthetically pleasing trail routes, and (3) facilitating recreational use by providing a transportation network. The extensive distribution of trails and their degrading condition in many natural areas can have pervasive environmental effects through alteration of natural drainage patterns, erosion and deposition of soil, introduction of exotic vegetation, and increasing human-wildlife conflicts. Degraded trails also threaten the quality of visitor experiences by making travel difficult or unsafe, or by diminishing visitors ?

Journal of Soil and Water Conservation↗

Relationships between yolk androgens and nest density, laying date, and laying order in Western Burrowing Owls (Athene cunicularia hypugaea)

Increases in yolk androgens within and among avian clutches have been correlated with decreased incubation time, increased aggression within a nest, increased begging behaviour, decreased immune response, and decreased life span. Although the mechanisms that lead to variability in yolk androgens within and between clutches are not completely known, yolk androgens can be a function of both social and environmental conditions. We were interested in if and how nesting density, laying date, and laying order influenced yolk androgens in Western Burrowing Owls (Athene cunicularia hypugaea (Bonaparte, 1825)) in which nest density varies considerably. In 2006 and 2007, we used radioimmunoassay to quantify the concentrations of testosterone, 5a-dihydrotestosterone, and androstenedione in the egg yolks from one early and one latelaid egg in 47 nests of Burrowing Owls located in the Morley Nelson Snake River Birds of Prey National Conservation Area in southern Idaho. Nesting density had no detectable effect on yolk androgens. Yolk androgens varied temporally and peaked in the middle of the laying season while being low before and after this time period. Within nests, late-laid eggs had higher testosterone and dihydrotestosterone than early-laid eggs; adrostendione exhibited a similar pattern in one but not both years of our study. It is possible that the seasonal pattern in yolk androgens that we observed is related to aspects of mate quality for females or declining chances of fledging success for later nesting females, whereas rises in egg androgens between early and late eggs within clutches could reflect a mechanism to assist nestlings from late-laid eggs that hatch one to several days after their siblings to better compete for resources within the nest or promote survival in the presence of larger siblings.

Canadian Journal of Zoology↗

Natural restoration basics for wetlands

Around the world, dams, diversions, and drainage systems reengineer rivers for navigation, farming, and urban development, and this has caused vast changes in the environmental conditions of the flood plains adjacent to these rivers (Middleton, 2002). Even though “flood pulses,” the periodic overflow of these rivers, were once the most important hydrological factor regulating all functions of the flood plain (Junk and others, 1986), now they have been reduced or eliminated along many of the world’s waterways (Sparks and others, 1998). These changes in river channels have created a hydrologic setting on flood plains that has not been conducive to restoration and nature conservation (Middleton, 2002). Consequently, USGS scientists are studying the long-term effects of hydrologic changes on flood plains, such as how the restoration of baldcypress (Taxodium distichum) swamps has been hindered because seeds cannot disperse or germinate without the seasonally driven high and low water levels associated with the flood pulse.

Fact Sheet↗

Ground-Water Levels in Huron County, Michigan, 2004-05

In 1990, the U.S. Geological Survey (USGS) completed a study of the hydrogeology of Huron County, Michigan (Sweat, 1991). In 1993, Huron County and the USGS entered into a continuing agreement to measure water levels at selected wells throughout Huron County. As part of the agreement, USGS has operated four continuous water-level recorders, installed from 1988 to 1991 on wells in Bingham, Fairhaven, Grant, and Lake Townships (fig. 1) and summarized the data collected in an annual or bi-annual report. The agreement was altered in 2003, and beginning January 1, 2004, only the wells in Fairhaven and Lake Townships retained continuous waterlevel recorders, while the wells in Grant and Bingham Townships reverted primarily to periodic or quarterly measurement status. USGS also has provided training for County or Huron Conservation District personnel to measure the water level, on a quarterly basis, in 25 wells. USGS personnel regularly accompany County or Huron Conservation District personnel to provide a quality assurance/quality control check of all measurements being made. Water-level data collected from the 25 periodically or quarterly-measured wells is summarized in an annual or bi-annual report. In 1998, the USGS also completed a temporal and spatial analysis of the monitoring well network in Huron County (Holtschlag and Sweat, 1998). The altitude of Lake Huron and precipitation are good indicators of general climatic conditions and, therefore, provide an environmental context for ground-water levels in Huron County. Figure 2 shows the mean-monthly water-level altitude of Lake Huron, averaged from measurements made by the U.S. Army Corps of Engineers at sites near Essexville or Harbor Beach, or both (National Oceanic and Atmospheric Administration, 2003-05), and monthly precipitation measured in Bad Axe (National Oceanic and Atmospheric Administration, 2003-05). In March 2003, a new low-water level for the period from 1991 through 2005 was measured in Lake Huron. There was almost no net change in the water level of Lake Huron from January 2004 through December 2005. In 2004, annual precipitation measured in Port Hope was about 3.7 inches above normal, but precipitation measured in Bad Axe was about 1.4 inches below normal. About 14.5 inches of precipitation was measured in Bad Axe during the 2004 summer growing season (May through August), which is about the same as was measured in Port Hope during the same period. Provisional precipitation totals for 2005 were 30.7 inches for January through November in Port Hope, and about 31.7 inches for the year in Bad Axe. About 10.6 inches of precipitation was measured in Bad Axe during the 2005 summer growing season, which is about 0.2 inches more than was recorded at Port Hope during the same period. Two wells equipped with continuous-data recorders are completed in the Saginaw and Marshall aquifers in Fairhaven and Lake Townships, respectively. From January 2004 through December 2005, the net rise in the water level in the Fairhaven Township well was 0.71 ft, and the net rise in the Lake Township well was 0.98 ft. The Fairhaven Township well is drilled adjacent to Saginaw Bay (Lake Huron), and, as previously noted, there was almost no net change in the water level in Saginaw Bay over the same period. Hydrographs showing water levels are presented for the two wells equipped with continuous-data recorders. Continuous-data recorders were discontinued in the Grant and Bingham Township wells at the end of 2003 due to budget constraints. The decision of which two wells to discontinue was based on an analysis of the intrinsic value to Huron County of data from each well. The Grant Township well was selected for periodic or quarterly measurement at that time because it is completed in the glacial aquifer, which is little used for drinking water purposes or absent in much of Huron County. The Bingham Township well, which is completed in the Marshall aquifer, was selected for periodic or quarterly measurement because water levels in the well are often perturbed as a result of pumpage from nearby production wells and do not reflect baseline conditions within the aquifer. Twenty five wells were measured on a periodic or quarterly basis in 2004-05. These wells are completed in the glacial, Saginaw, and Marshall aquifers, and the Coldwater confining unit. Although each quarterly measurement only provides a “snapshot” water level (measured in feet below land surface), the data adequately define the generalized water-level trend in the aquifer near the well. Water levels in 15 quarterlymeasured wells had a net rise ranging from 0.20 to 1.31 ft for the period from January 2004 to December 2005, while water levels in 10 of the wells had a net decline ranging from 0.07 to 0.99 ft over the same period (fig. 3; table 1). Period-of-record (the time period when water levels have been measured by U.S. Geological Survey or their cooperators) minimum depths to water (high-water levels) were measured in March 2004 in two quarterly-measured wells completed in the Marshall aquifer in Lake and Hume Townships. Period-of-record maximum depths to water were measured in September 2005 in three wells completed in the Marshall aquifer near Bad Axe. Water levels in those three wells recovered about 3 to 5 ft between September and December 2005. No period-of-record minimum or maximum depths to water were measured for the period from January 2004 through December 2005 in wells completed in either the glacial and Saginaw aquifers, or the Coldwater confining unit. Hydrographs showing water levels measured in each well are presented for the 25 wells measured on a quarterly basis. Water-level trends measured for the period from January 2004 through December 2005 in other wells in Lower Michigan have similarities to those measured in Huron County wells. Several external factors influence water-level trends including proximity to nearby production wells, amount and timing of precipitation events, evapotranspiration and type of prevalent ground cover, proximity of aquifer to the surface, and hydraulic characteristics of overlying geologic materials.

Michigan↗

Ground-water levels in Huron County, Michigan, 2004-05

In 1990, the U.S. Geological Survey (USGS) completed a study of the hydrogeology of Huron County, Michigan (Sweat, 1991). In 1993, Huron County and the USGS entered into a continuing agreement to measure water levels at selected wells throughout Huron County. As part of the agreement, USGS has operated four continuous water-level recorders, installed from 1988 to 1991 on wells in Bingham, Fairhaven, Grant, and Lake Townships (fig. 1) and summarized the data collected in an annual or bi-annual report. The agreement was altered in 2003, and beginning January 1, 2004, only the wells in Fairhaven and Lake Townships retained continuous waterlevel recorders, while the wells in Grant and Bingham Townships reverted primarily to periodic or quarterly measurement status. USGS also has provided training for County or Huron Conservation District personnel to measure the water level, on a quarterly basis, in 25 wells. USGS personnel regularly accompany County or Huron Conservation District personnel to provide a quality assurance/quality control check of all measurements being made. Water-level data collected from the 25 periodically or quarterly-measured wells is summarized in an annual or bi-annual report. In 1998, the USGS also completed a temporal and spatial analysis of the monitoring well network in Huron County (Holtschlag and Sweat, 1998). The altitude of Lake Huron and precipitation are good indicators of general climatic conditions and, therefore, provide an environmental context for ground-water levels in Huron County. Figure 2 shows the mean-monthly water-level altitude of Lake Huron, averaged from measurements made by the U.S. Army Corps of Engineers at sites near Essexville or Harbor Beach, or both (National Oceanic and Atmospheric Administration, 2003-05), and monthly precipitation measured in Bad Axe (National Oceanic and Atmospheric Administration, 2003-05). In March 2003, a new low-water level for the period from 1991 through 2005 was measured in Lake Huron. There was almost no net change in the water level of Lake Huron from January 2004 through December 2005. In 2004, annual precipitation measured in Port Hope was about 3.7 inches above normal, but precipitation measured in Bad Axe was about 1.4 inches below normal. About 14.5 inches of precipitation was measured in Bad Axe during the 2004 summer growing season (May through August), which is about the same as was measured in Port Hope during the same period. Provisional precipitation totals for 2005 were 30.7 inches for January through November in Port Hope, and about 31.7 inches for the year in Bad Axe. About 10.6 inches of precipitation was measured in Bad Axe during the 2005 summer growing season, which is about 0.2 inches more than was recorded at Port Hope during the same period. Two wells equipped with continuous-data recorders are completed in the Saginaw and Marshall aquifers in Fairhaven and Lake Townships, respectively. From January 2004 through December 2005, the net rise in the water level in the Fairhaven Township well was 0.71 ft, and the net rise in the Lake Township well was 0.98 ft. The Fairhaven Township well is drilled adjacent to Saginaw Bay (Lake Huron), and, as previously noted, there was almost no net change in the water level in Saginaw Bay over the same period. Hydrographs showing water levels are presented for the two wells equipped with continuous-data recorders. Continuous-data recorders were discontinued in the Grant and Bingham Township wells at the end of 2003 due to budget constraints. The decision of which two wells to discontinue was based on an analysis of the intrinsic value to Huron County of data from each well. The Grant Township well was selected for periodic or quarterly measurement at that time because it is completed in the glacial aquifer, which is little used for drinking water purposes or absent in much of Huron County. The Bingham Township well, which is completed in the Marshall aquifer, was selected for

Michigan↗

The potential influence of changing climate on the persistence of salmonids of the inland west

The Earth's climate warmed steadily during the 20th century, and mean annual air temperatures are estimated to have increased by 0.6°C (Intergovernmental Panel on Climate Change, 2007). Although many cycles of warming and cooling have occurred in the past, the most recent warming period is unique in its rate and magnitude of change (Siegenthaler and others, 2005) and in its association with anthropogenic emissions of greenhouse gases (Intergovernmental Panel on Climate Change , 2007). The climate in the western United States warmed in concert with the global trend but at an accelerated rate (+0.8°C during the 20th century; Saunders and others, 2008). The region could also prove especially sensitive to future changes because the relatively small human population is growing rapidly, as are demands on limited water supplies. Regional hydrological patterns are dominated by seasonal snow accumulation at upper elevations. Most of the region is relatively dry, and both terrestrial and aquatic ecosystems are strongly constrained b y water availability (Barnett and others, 2008; Brown and others, 2008). Stream environments are dynamic and climatically extreme, and salmonid fishes are the dominant elements of the native biodiversity (McPhail and Lindsey, 1986; Waples and others, 2008). Salmonids have broad economic and ecologic importance, but a century of intensive water resource development, nonnative fish stocking, and land use has significantly reduced many populations and several taxa are now protected under the Endangered Species Act (Thurow and others, 1997; Trotter, 2008). Because salmonids require relatively pristine, cold water environments and are often isolated in headwater habitats, members of this group may be especially vulnerable to the effects of a warming climate (Keleher and Rahel, 1996; Rieman and others, 2007; Williams and others, 2009). Warming during the 20th century drove a series of environmental trends that have profound implications for many aspects of salmonid habitat, including disturbance regimes such as wildfire, and unfavorable changes to thermal and hydrologic properties of aquatic systems. Warmer air temperatures have been associated with decreased winter snow accumulations, have accelerated snowmelt, and have advanced the timing of peak runoff by several days to weeks across most of western North America (Stewart and others, 2005; Barnett and others, 2008). Less snow and earlier runoff decrease aquifer recharge, make less water available for groundwater inputs to streams, and are contributing to widespread decreases in summer low flows (Stewart and others, 2005; Rood and others, 2008; Luce and Holden 2009). Interannual variability in stream flow is increasing, as is the persistence of multi-year extreme conditions (McCabe and others, 2004; Pagano and Garen 2005). In many areas of western North America, flood risks have increased in association with warmer temperatures during the 20th century (Hamlet and Lettenmaier, 2005). Streams where midwinter temperatures are near freezing have proven especially sensitive to increased flooding because of associated transitional hydrological patterns (mixtures of rainfall and snowmelt) and propensity for occasional rain-on-snow events to rapidly melt winter snowpack and generate large floods (Hamlet and Lettenmaier, 2005). Stream temperatures in many areas are increasing (Peterson and Kitchell, 2001; Morrison and others, 2002; Bartholow, 2005; Kaushal and others, 2010), due to both air temperature increases and reduced summer flows that make streams more sensitive to warmer air temperatures (Isaak and others, 2010). In recent decades, wildfires have become more common across much of the western United States during periods of more frequent droughts (Westerling and others, 2006; Hoerling and Eischeid, 2007), and local stream temperature can increase in postfire environments (Gresswell, 1999; Dunham and others, 2007). Fire-related temperature increase within streams is commonly a transient phenomenon, lasting only until riparian vegetation has recovered (Gresswell, 1999); however, ongoing climate change could preclude recovery to higher stature, prefire vegetation types in some areas (McKenzie and others, 2004; van Mantgem and Stephenson, 2007), resulting in a loss of critical riparian shading. Additionally, when wildfires occur in steep mountain topographies, the vegetation that stabilize s soils on hillslopes is often killed and landslides become more prevalent (Gresswell, 1999). Landslides int o stream channels form debris flows composed of sediment slurries and dead trees that can scour channels to bedrock and further exacerbate stream heating, delay recovery of riparian areas, or extirpate fish populations (Gresswell, 1999; May and Gresswell, 2003; Dunham and others, 2007). Changes in stream environments will shift habitat distributions, sometimes unpredictably, in both time and space for many salmonid fishes. Water temperature fundamentally influences aquatic ecosystem health because distribution, reproduction, fitness, and survival of ectothermic organisms are inextricably linked to the thermal regime of the environment. Historically, research has focused on defining lethal thermal limits of salmonids (Eaton and others, 1995; Selong and others, 2001; Todd and others, 2008); however, water temperature is known to be important in biological processes at a variety of spatial scales and levels of biological organization (Rahel and Olden, 2008; McCullough and others, 2009). For instance, trout are affected directly by water temperature through feeding, metabolism, and growth rates, and indirectly by factors such as prey availability and species interactions (Wehrly and others, 2007; Rahel and Olden, 2008). Where cold water temperatures currently limit habitat suitability and distributions of some species (for example, at the highest and most northerly distributional extents; Nakano and others, 1996; Coleman and Fausch, 2007), a warming climate may gradually increase the quality and extent of suitable habitat. Over time, previously constrained populations are expected to expand into these new habitats and increase in number. Some evidence suggests this may already be happening in Alaska, where streams in recently deglaciated areas are being colonized by emigrants from nearby salmon and char populations (Milner and others, 2000). Unfortunately, many of the sensitive salmonid species that are often the focus of western managers are unlikely to benefit from future water temperature increases. Warmer stream temperatures will facilitate invasion by nonnative species that are broadly established in downstream areas into upstream areas where they will compete with native species (Rieman and others, 2006; Rahel and Olden, 2008; Fausch and others, 2009). In other cases, warmer stream temperatures will render thermally suitable habitats unsuitable in downstream areas and effect net losses of habitat because upstream distributions are often constrained by streams that are too small or steep (Hari and others, 2006; Isaak and others, 2010). Both scenarios are realistic for fish species like bull trout ( Salvelinus confluentus ) (Rieman and others, 2006; Rieman and others, 2007), the various subspecies of cutthroat trout ( Oncorhynchus clarkii ) (Williams and others, 2009), Gila trout ( Oncorhynchus gilae gilae ) (Kennedy and others, 2008), and Apache trout ( Oncorhynchus gilae apache ) (Rinne and Minckley, 1985; Carmichael and others, 1993). As native species are increasingly confined to smaller and more isolated habitats by a gradually warming climate, the effects of wildfires (whether related to lethal changes in water quality during a fire, channel debris flows, or chronic postfire warming ) could have greater proportional effects on remaining habitats (for example, Brown and others, 2001; Rieman and others, 2007). If these changes were accompanied by additional hydrologic alterations associated with changes to the magnitude, frequency, duration, timing, and rate of change of discharge patterns (Jager and others, 1999; Henderson and others, 2000), populations may begin to lose some of their historic resilience and become ever more susceptible to local extirpations. As dramatic and extensive as climatic and environmental trends are for salmonid habitats, global climate models (GCMs) project that many of these trends will continue and even accelerate until at least the middle of the 21st century (Intergovernmental Panel on Climate Change, 2007). Current projections suggest mean annual air temperatures will increase by an additional 1–3°C, and early indications are that climate trajectory is at the higher end of this range (Pittock, 2006; Raupach and others, 2007). Although predicted changes vary considerably, even the most conservative estimates suggest a warming rate that will be twice that observed during the 20th century. Projections for the midcentury are most certainly due to the effects of greenhouse gases already emitted or predicted in the short term, uncertainties of the effects of longer-term greenhouse gas emissions, short-term climate cycles, and process errors associated with climate models (Cox and Stephenson, 2007). Projections of changes in total precipitation are less certain than those for air temperatures, but most GCMs project relatively small changes in the Northwest, with the exception of slightly drier summer periods (Mote and others, 2008; Karl and others, 2009). In the Southwest, however, significant decreases (such as 15–30 percent ) are projected during most periods of the year, and this area is one of the few for which Intergovernmental Panel on Climate Change (2007) precipitation projections have a high level of certainty (Hoerling and Eischeid, 2007; Karl and others, 2009). Clearly, managers of native salmonids in the wester n United States should consider adjusting management strategies to accommodate a warmer and possibly drier future (Williams and others, 2009). Tools are needed to forecast where important changes may occur and how conservation efforts should be prioritized. In this Open-File Report, we document our initial efforts in this regard for 10 species and subspecies of inland trout and Montana Arctic grayling ( Thymallus arcticus ) across the western United States.

Arizona, California, Colorado, Idaho, Montana, Nev↗

Assessment of the White Salmon watershed using the ecosystem diagnosis and treatment model

Salmon habitat models provide managers the ability to identify habitat limitations and prioritize restoration activities. Ecosystem Diagnosis and Treatment (EDT) has become a widely used tool for salmonid habitat analysis in the Pacific Northwest. The EDT model is a rule-based habitat rating system that provides reach-level diagnosis of habitat conditions for the major salmonid species of the Pacific Northwest. The EDT process itself is a complex modeling program with defined data needs. The program is a product developed by Mobrand Biometrics Incorporated (MBI) largely through funding by the Northwest Power and Conservation Council (NPCC). The NPCC had provided a free version of the program accessible through a website that required user registration. The EDT model allows the user to rate the quality, quantity, and diversity of fish habitat along a waterway. The model uses diagnostic species such as steelhead and Chinook salmon to identify the most significant limiting factors in a river and to help identify reaches for protection and restoration. The model includes a set of tools to help organize environmental information and rate the habitat elements that pertain to specific life stages of the diagnostic species. A major benefit of EDT is that it can show the potential of a river under current conditions and possible future conditions. The result is a scientifically-based assessment of fish habitat and a prioritization of restoration needs.

Report↗

Neither microcystin, nor nodularin, nor cylindrospermopsin directly interact with human toll-like receptors

Various stressors including temperature, environmental chemicals, and toxins can have profound impacts on immunity to pathogens. Increased eutrophication near rivers and lakes coupled with climate change are predicted to lead to increased algal blooms. Currently, the effects of cyanobacterial toxins on disease resistance in mammals is a largely unexplored area of research. Recent studies have suggested that freshwater cyanotoxins can elicit immunomodulation through interaction with specific components of innate immunity, thus potentially altering disease susceptibility parameters for fish, wildlife, and human health owing to the conserved nature of the vertebrate immune system. In this study, we investigated the effects of three microcystin congeners (LR, LA, and RR), nodularin-R, and cylindrospermopsin for their ability to directly interact with nine different human Toll-like receptors (TLRs)—key pathogen recognition receptors for innate immunity. Toxin concentrations were verified by LC/MS/MS prior to use. Using an established HEK293-hTLR NF-κB reporter assay, we concluded that none of the tested toxins (29–90 nM final concentration) directly interacted with human TLRs in either an agonistic or antagonistic manner. These results suggest that earlier reports of cyanotoxin-induced NF-κB responses likely occur through different surface receptors to mediate inflammation.

Chemosphere↗

Evaluating slash piles as habitat for a threatened salamander

Background Amplified wildfire activity in forests of the western United States threatens biodiversity. Fuel treatments can reduce fire severity, modify fire behavior, and restore forest structure and composition, yet impacts of some treatments, including slash piling and burning, on wildlife have received little attention. Piling of residual woody material may create habitable microenvironments for species that require cool, moist microclimates for all biological and ecological functions. One such species, the Sacramento Mountain salamander ( Aneides hardii Taylor), a relictual, endemic salamander narrowly distributed in the mountains of south-central New Mexico, USA, has been found below constructed slash piles within its range, but the characteristics of occupied slash piles and the extent of their occupancy has not yet been quantified. We surveyed for Sacramento Mountain salamanders in slash piles and under logs (cover objects) adjacent to piles and within a surrounding survey plot, and related salamander occupancy to slash pile and cover object characteristics, soil moisture and temperature, and environmental setting. Results We found Sacramento Mountain salamanders in 50% of surveyed slash piles. About 90% of salamanders were found in piles that contained black plastic sheeting, which held accumulations of moist leaf litter and other forest debris. We found no differences in pile characteristics, soil variables, or environmental setting between piles occupied by salamanders and piles in which no salamanders were detected. Salamander density was highest in slash piles, ~ 10% lower under cover objects in the survey area, and ~ 23% lower under cover objects adjacent to slash piles. Conclusions Slash piles serve as habitat for Sacramento Mountain salamanders. Our results suggest that within our study area or similar environments within the species range, any comparable slash pile has the potential to be occupied by salamanders. Species and habitat conservation measures indicated by this study and the timing of historical detections into mid-October include constructing smaller, pyramidal piles that minimize log-on-log or log-ground contact, avoiding the inclusion of black plastic in piles, limiting residence time of piles on the landscape, and initiating pile burning in late October or early November, when most salamanders are likely to have retreated below the ground surface.

New Mexico↗