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Cooperative activities of the U.S. Geological Survey with Historically Black Colleges and Universities, fiscal years 1983-90

The U.S. Department of the Interior, U.S. Geological Survey, has been involved in numerous cooperative activities with Historically Black Colleges and Universities. Assistance agreements, which include both grants and cooperative agreements, have fostered many educational research and development activities. These activities have included site visits, employment opportunities, curriculum development, seminars, and research projects. The activities are consistent with the Geological Survey's mission of conducting earth-science research and dissemination of the results. The cooperative have benefitted the Historically Black Colleges and Universities, their students, and the Geological Survey.

Open-File Report↗

Chapter D. The Loma Prieta, California, Earthquake of October 17, 1989 - Recovery, Mitigation, and Reconstruction

The papers in this chapter reflect the broad spectrum of issues that arise following a major damaging urban earthquake-the regional economic consequences, rehousing problems, reconstruction strategies and policies, and opportunities for mitigation before the next major seismic event. While some of these papers deal with structural or physical science topics, their significant social and policy implications make them relevant for improving our understanding of the processes and dynamics that take place during the recovery period.

Professional Paper↗

Geophysical log analysis of selected test and residential wells at the Shenandoah Road National Superfund Site, East Fishkill, Dutchess County, New York

The U.S. Geological Survey collected and analyzed geophysical logs from 20 test wells and 23 residential wells at the Shenandoah Road National Superfund Site in East Fishkill, New York, from 2006 through 2010 as part of an Interagency Agreement to provide hydrogeologic technical support to the U.S. Environmental Protection Agency, Region 2. The geophysical logs collected include caliper, gamma, acoustic and optical televiewer, deviation, electromagnetic-induction, magnetic-susceptibility, fluid-property, and flow under ambient and pumped conditions. The geophysical logs were analyzed along with single-well aquifer test data and drilling logs to characterize the lithology, fabric, fractures, and flow zones penetrated by the wells. The results of the geophysical log analysis were used as part of the hydrogeologic characterization of the site and in the design of discrete-zone monitoring installations in the test wells and selected residential wells. Most of the logged test and residential wells penetrated gneiss of the Hudson Highlands Complex or dolostones in the Wappinger Group, and some wells penetrated both the dolostone and gneiss. The bedrock fabric reflects the regional northeast-southwest structural trend, as well as localized folding, and includes foliation in the gneiss and bedding in the dolostone. Many fractures were oriented along the bedrock fabric, whereas others were orthogonal to the fabric. Total wellbore transmissivity of the wells was estimated from short-term, single-well aquifer test data through the use of the Cooper-Jacob analytical solution. An empirical relation was established to estimate total wellbore transmissivity from specific-capacity data for wells with insufficient transient drawdown measurements. Wellbore transmissivity estimates ranged from 0.36 to 370 feet squared per day (ft 2 /d), whereas specific capacities ranged from 0.03 to 2.1 gallons per minute per foot ((gal/min)/ft). Transmissivity and hydraulic heads of individual fracture zones were estimated from the total wellbore transmissivity and flow logs through use of an analytical model based on the Thiem equation. The model-estimated transmissivity of 95 fracture zones delineated in the 43 wells ranged from 0.25 to 340 ft 2 /d, with a median value of 6.7 ft 2 /d. The difference between model-estimated fracture-zone heads and the composite heads in each well ranged from less 0.01 to more than 10 feet (ft). Flow-log analysis generally provided an order of magnitude estimate for the fracture-zone hydraulic-head difference on the basis of a comparison of estimated and measured values. The geophysical logs and their analyses are available for display and download from the U.S. Geological Survey, New York Water Science Center, online geophysical log archive ( http://ny.water.usgs.gov/maps/geologs/ ) in LAS (Log ASCII Standard), PDF, and WellCad formats.

New York↗

Developing accurate survey methods for estimating population sizes and trends of the critically endangered Nihoa Millerbird and Nihoa Finch.

This report describes the results of a comparative study of bird survey methods undertaken for the purpose of improving assessments of the conservation status for the two endemic passerines on the Island of Nihoa—Nihoa Millerbird (Sylviidae: Acrocephalus familiaris kingi ) and Nihoa Finch (Fringilidae: Telespiza ultima ; also referred herein as millerbird and finch)—both listed as endangered under the Federal Endangered Species Act (ESA) and Hawai`i Revised Statutes 195D. The current survey protocol, implemented since 1967, has produced a highly variable range of counts for both the millerbird and finch, making difficult assessments of population size and trend. This report details the analyses of bird survey data collected in 2010 and 2011 in which three survey methods were compared―strip-transect, line-transect, and point-transect sampling―and provides recommendations for improved survey methods and protocols. Funding for this research was provided through a Science Support Partnership grant sponsored jointly by the U.S. Geological Survey (USGS) and the U.S. Fish and Wildlife Service (USFWS). Point-transect surveys indicated that millerbirds were more abundant than shown by the striptransect method, and were estimated at 802 birds in 2010 (95%CI = 652 – 964) and 704 birds in 2011 (95%CI = 579 – 837). Point-transect surveys yielded population estimates with improved precision which will permit trends to be detected in shorter time periods and with greater statistical power than is available from strip-transect survey methods. Mean finch population estimates and associated uncertainty were not markedly different among the three survey methods, but the performance of models used to estimate density and population size are expected to improve as the data from additional surveys are incorporated. Using the pointtransect survey, the mean finch population size was estimated at 2,917 birds in 2010 (95%CI = 2,037 – 3,965) and 2,461 birds in 2011 (95%CI = 1,682 – 3,348). Preliminary testing of the line-transect method in 2011 showed that it would not generate sufficient detections to effectively model bird density, and consequently, relatively precise population size estimates. Both species were fairly evenly distributed across Nihoa and appear to occur in all or nearly all available habitat. The time expended and area traversed by observers was similar among survey methods; however, point-transect surveys do not require that observers walk a straight transect line, thereby allowing them to avoid culturally or biologically sensitive areas and minimize the adverse effects of recurrent travel to any particular area. In general, pointtransect surveys detect more birds than strip-survey methods, thereby improving precision and resulting population size and trend estimation. The method is also better suited for the steep and uneven terrain of Nihoa

Hawaii↗

Ecological Requirements for Pallid Sturgeon Reproduction and Recruitment in the Lower Missouri River: A Research Synthesis 2005-08

This report provides a synthesis of results obtained between 2005 and 2008 from the Comprehensive Sturgeon Research Program, an interagency collaboration between the U.S. Geological Survey, Nebraska Game and Parks Commission, U.S. Fish and Wildlife Service, and the U.S. Army Corps of Engineers' Missouri River Recovery - Integrated Science Program. The goal of the Comprehensive Sturgeon Research Program is to improve fundamental understanding of reproductive ecology of the pallid sturgeon with the intent that improved understanding will inform river and species management decisions. Specific objectives include: *Determining movement, habitat-use, and reproductive behavior of pallid sturgeon; *Understanding reproductive physiology of pallid sturgeon and relations to environmental conditions; *Determining origin, transport, and fate of drifting pallid sturgeon larvae, and evaluating bottlenecks for recruitment of early life stages; *Quantifying availability and dynamics of aquatic habitats needed by pallid sturgeon for all life stages; and *Managing databases, integrating understanding, and publishing relevant information into the public domain. Management actions to increase reproductive success and survival of pallid sturgeon in the Lower Missouri River have been focused on flow regime, channel morphology, and propagation. Integration of 2005-08 Comprehensive Sturgeon Research Program research provides insight into linkages among flow regime, re-engineered channel morphology, and pallid sturgeon reproduction and survival. The research approach of the Comprehensive Sturgeon Research Program integrates opportunistic field studies, field-based experiments, and controlled laboratory studies. The field study plan is designed to explore the role of flow regime and associated environmental cues using two complementary approaches. An upstream-downstream approach compares sturgeon reproductive behavior between an upstream section of the Lower Missouri River with highly altered flow regime to a downstream section that maintains much of its pre-regulation flow variability. The upstream section also has the potential for an experimental approach to compare reproductive behavior in years with pulsed flow modifications ('spring rises') to years without. The reproductive cycle of the female sturgeon requires several years to progress through gonadal development, oocyte maturation, and spawning. Converging lines of evidence support the hypothesis that maturation and readiness to spawn in female sturgeon is cued many months before spawning. Information on reproductive readiness of shovelnose sturgeon indicates that sturgeon at different locations along the Lower Missouri River between St. Louis and Gavins Point Dam are all responding to the same early cue. Although not a perfect surrogate, the more abundant shovelnose sturgeon is morphologically, physiologically, and genetically similar to pallid sturgeon, and thereby provides a useful comparative model for the rarer species. Day length is the likely candidate to define a temporal spawning window. Within the spawning window, one or more additional, short-term, and specific cues may serve to signal ovulation and release of gametes. Of three potential spawning cues - water temperature, water discharge, and day of year - water temperature is the most likely proximate cue because of the fundamental physiological role temperature plays in sturgeon embryo development and survival, and the sensitivity of many fish hormones to temperature change. It also is possible that neither temperature nor discharge is cueing spawning; instead, reproductive behavior may result from the biological clock advancing an individual fish's readiness to spawn day after day through the spawning period until the right moment, independent of local environmental conditions. Separation of the individual effects of discharge events, water temperature, and other possible factors, such as proximity to male

Scientific Investigations Report↗

Mucous lysozyme levels in hatchery coho salmon (Oncorhynchus kisutch) and spring chinook salmon (O. tshawytscha) early in the parr-smolt transformation

Mucous lysozyme concentrations were determined in juvenile coho salmon (Oncorhynchus kisutch) and spring chinook salmon (O. tshawytscha) to establish reference levels during the time associated with the parr-smolt transformation. The first reported naris and vent mucous lysozyme levels are provided for spring chinook salmon and coho salmon. Naris mucous lysozyme levels ranged between 300 and 700 ??g ml-1, vent mucous lysozyme from 100 to 300 ??g ml-1, and skin mucous lysozyme levels were below 130 ??g ml-1. Lysozyme levels in the two species showed the same relationship with the highest levels in naris mucous, and the lowest in skin mucous. A seasonal decrease occurred in both species with a significant decrease in naris mucous lysozyme between February and March. Gill ATPase levels used to monitor smolt development during the same period did not reach ranges reported for smolts for either species during emigration. Identification of seasonal levels of lysozyme activity in mucous provides an alternative determination of developmental status prior to release of fish from the hatchery when salmonids are still undergoing the parr-smolt transformation. ?? 2001 Elsevier Science B.V.

Aquaculture↗

Sedimentation Survey of Lago de Cidra, Puerto Rico, August 2007

Lago de Cidra is a reservoir located on the confluence of Rio de Bayamon, Rio Sabana, and Quebrada Prieta, in the municipality of Cidra in east-central Puerto Rico, about 3.0 kilometers northeast of the town of Cidra. The dam is owned and operated by the Puerto Rico Aqueduct and Sewer Authority (PRASA), and was constructed in 1946 as a 6.54-million-cubic-meter supplemental water supply for the San Juan metropolitan area. The reservoir impounds the waters of Rio de Bayamon, Rio Sabana and Quebrada Prieta. The reservoir has a drainage area of 21.4 square kilometers. The dam is a concrete gravity and earthfill structure with a length of approximately 165 meters and a structural height of 24 meters. The spillway portion of the dam is an ungated ogee crest about 40 meters long with a crest elevation of 403.00 meters above mean sea level. Additional information and operational procedures are listed in Soler-Lopez (1999). During August 14-15, 2007, the U.S. Geological Survey (USGS), Caribbean Water Science Center (CWSC), in cooperation with the PRASA, conducted a bathymetric survey of Lago de Cidra to update the reservoir storage capacity and actualize the reservoir sedimentation rate by comparing the 2007 data with the previous 1997 bathymetric survey data. The purpose of this report is to describe and document the USGS sedimentation survey conducted at Lago de Cidra during August 2007, including the methods used to update the reservoir storage capacity, sedimentation rates, and areas of substantial sediment accumulation since 1997.

Scientific Investigations Map↗

Use of USGS earth science products by city planning agencies in the San Francisco Bay region, California

An inventory of the use of USGS products in selected planning studies, plans, plan implementation devices, and other planning-related activities was completed for the ninety-one cities in the nine-county San Francisco Bay region. This inventory was designed to determine and document the use of the 85 earth science products prepared as a part of the San Francisco Bay Region Environment and Resources Planning Study (SFBRS). This inventory showed that: (1) three-fourths of the cities had planning staffs who were familiar with SFBRS products, or had made use of such products; (2) over half of the cities had prepared planning documents which contained references to SFBRS products; (3) the types of planning applications most often indicated were: geologic hazards studies; seismic safety, public safety, conservation, and open-space plan elements; general reference; and the preparation and review of environmental impact reports and statements; (4) almost 90 percent of all 85 SFBRS products were used at least once for a city planning activity, and one product was used at least 67 times for various city planning activities; and (5) at least forty-five other other USGS products were also used for various city planning activities. All of the seven SFBRS products that were used 30 or more times for city planning activities were small-scale, large-areal-coverage, hazard-type products. Each product is interpretative and contains additional data which makes it more relevant or more interesting. The planning staffs of each city were also interviewed and asked to indicate any problems in the use of the SFBRS products, to recommend improvements, and to identify any needed or desired earth science data. The responses showed that: (1) the map scales commonly used by cities were much larger than 1:12,000; (2) few cities had planning staffs with training or experience in the earth sciences or engineering; (3) less than one-fourth of the cities failed to use SFBRS products-primarily because their staffs were unaware of the SFBRS, unfamiliar with its products, or lacked adequate capability; (4) almost two-thirds of the cities expressed some problems in using the products-primarily scale and detail; (5) over two-thirds of the cities expressed an interest in continuing to use, or planning to use, the SFBRS products in the future, and a need or desire for additional earth science, engineering or other data; and (6) over one-half of the cities suggested improvements-primarily larger scale or more detail and less technical or more interpretative products. From the inventory and responses to the interviews, it is concluded that the cities in the Bay region have considerable familiarity with, and have made substantial use of, SFBRS products. This use was made by many cities despite their small size, limited staff capability, and the design of the products which was intended primarily for regional planning at a regional scale. Suggestions are made to ensure more familiarity with, and more effective use of, earth science data in the future. These suggestions include: (1) providing engineering interpretations and land-use capability ratings to make earth science data more readily usable; (2) monitoring and analyzing new state laws and regulations to better anticipate and respond to local earth science data needs; (3) including technical assistance with any earth science data designed for planners and decision-makers; (4) providing larger scale and greater detail earth science data on a demonstration basis; (5) giving priority to urban and urbanizing areas so as to conserve limited staff resources; and (6) ensuring product distribution to all potential users.

California↗

First-order exchange coefficient coupling for simulating surface water-groundwater interactions: Parameter sensitivity and consistency with a physics-based approach

Distributed hydrologic models capable of simulating fully-coupled surface water and groundwater flow are increasingly used to examine problems in the hydrologic sciences. Several techniques are currently available to couple the surface and subsurface; the two most frequently employed approaches are first-order exchange coefficients (a.k.a., the surface conductance method) and enforced continuity of pressure and flux at the surface-subsurface boundary condition. The effort reported here examines the parameter sensitivity of simulated hydrologic response for the first-order exchange coefficients at a well-characterized field site using the fully coupled Integrated Hydrology Model (InHM). This investigation demonstrates that the first-order exchange coefficients can be selected such that the simulated hydrologic response is insensitive to the parameter choice, while simulation time is considerably reduced. Alternatively, the ability to choose a first-order exchange coefficient that intentionally decouples the surface and subsurface facilitates concept-development simulations to examine real-world situations where the surface-subsurface exchange is impaired. While the parameters comprising the first-order exchange coefficient cannot be directly estimated or measured, the insensitivity of the simulated flow system to these parameters (when chosen appropriately) combined with the ability to mimic actual physical processes suggests that the first-order exchange coefficient approach can be consistent with a physics-based framework. Copyright ?? 2009 John Wiley & Sons, Ltd.

Hydrological Processes↗

Crocoite: An unusual mode of occurrence for lead in coal

What is believed to be a very unusual mode of occurrence for lead in coal has been identified as crocoite (PbCrO4). As part of a larger study on trace elements and mineralogy in the Cretaceous Main Seam in New Zealand, crocoite was found in raw coal samples within the lower part of the coal seam. X-ray diffraction (XRD) and bulk chemical data from a SEM equipped with an energy dispersive X-ray analyser (EDXA) have confirmed the identity of this mineral. This is apparently the first time that crocoite has been reported in coal. Crocoite usually occurs only in the oxidised zone of lead mineral deposits. The occurrence of this mineral in the Main Seam coal implies that the deposit was exposed to an oxidising environment at some stage, most likely after coalification. Published by Elsevier Science B.V.

International Journal of Coal Geology↗

Interactions between northern elephant seals and vehicles near Point Piedras Blancas, California

Northern elephant seals, Mirounga angustirostris , were nearly extirpated in the late 19th and early 20th centuries. However, they have recovered to the point where they are now locally abundant (Stewart e t al. 1994). Stimulated by the report of human/northern elephant seal interactions in Baja California Sur (Webster and Baird 1998), we report here on an unusual terrestrial example of the increasing conflict between the growing populations of these two species in central California.

California↗

Virus diseases of the salmonidae in the western United States. I. Etiology and epizootiology

The history of fish diseases in western United States shows an increasing awareness that viruses could cause epizootics in fish. Fishery biologists bunked first, for protozoan and metazoan parasites, then for bacteria, and if none could be identified assumed that the mortalities were attributable to nutritional deficiency, Microbiologists in general were cognizant of virus diseases in other animals and investigators of fish diseases were alert to the possibility that piscine epizootics could be of similar cause. In 1950 an epizootic occurred in sockeye salmon (Gncorhynchus norkm) that was shown to have a viral etiologic agent. In recent years, with increasing frequency, we have been able to demonstrate a virus utiology for epizootics and panzootics in trout and salmon in several states in the West. FIGURE 1 is a map showing the location of epizootics of infectious pancreatic necrosis (IPN), Sacramento River chinook disease (SRCD), Oregon sockeye disease (OSD), and Columbia River sockeye disease (CRSDJ. The pathology and immunopathology of these are discussed in detail in other reports. The present report was initiated as a review of the literature concerning the diseases and to present in brief a description of their etiologic agents.

Annals of the New York Academy of Sciences↗

Integrated fire science in the Rocky Mountains

Fire is an important ecological process that has helped shape western landscapes. Wildfire suppression and other management practices may have altered historic fire regimes in ecosystems adapted to frequent, low-severity fires. Compounding this problem is the encroachment of homes into fire-prone areas. Fire affects a number of abiotic and biotic components of ecosystems, and had many economic and social ramifications. The full range of consequences, however, remains poorly understood. To implement sound fire management, managers require improved understanding of fire effects on public lands. Although the importance of fire to ecosystem function is widely recognized, wildfire science has not been fully integrated into management actions. An interdisciplinary approach is essential to integrate and evaluate tradeoffs among fire management policies and practices.

Rocky Mountains↗

Real Time Flood Alert System (RTFAS) for Puerto Rico

The Real Time Flood Alert System is a web-based computer program, developed as a data integration tool, and designed to increase the ability of emergency managers to rapidly and accurately predict flooding conditions of streams in Puerto Rico. The system includes software and a relational database to determine the spatial and temporal distribution of rainfall, water levels in streams and reservoirs, and associated storms to determine hazardous and potential flood conditions. The computer program was developed as part of a cooperative agreement between the U.S. Geological Survey Caribbean Water Science Center and the Puerto Rico Emergency Management Agency, and integrates information collected and processed by these two agencies and the National Weather Service.

Fact Sheet↗

Topographic Science

The mission of U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) Center Topographic Science is to establish partnerships and conduct research and applications that facilitate the development and use of integrated national and global topographic datasets. Topographic Science includes a wide range of research and applications that result in improved seamless topographic datasets, advanced elevation technology, data integration and terrain visualization, new and improved elevation derivatives, and development of Web-based tools. In cooperation with our partners, Topographic Science is developing integrated-science applications for mapping, national natural resource initiatives, hazards, and global change science. http://topotools.cr.usgs.gov/.

Fact Sheet↗

South Dakota and Landsat

Few States derive as much of their social and economic well-being from the land as South Dakota. Agriculture is the State’s primary industry. Hunting, fishing, tourism, mining, and hydroelectric power are also important economic and cultural drivers. Data from the U.S. Geological Survey Landsat program, archived at the U.S. Geological Survey Earth Resources Observation and Science Center just outside Sioux Falls, South Dakota, has long been a boon to the monitoring, mapping, and management of the State’s land resources.

South Dakota↗