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Behavioral toxicology: Stimulating challenges for a growing discipline

Since the early 1970s, contaminants have been shown to affect virtually every aspect of behavior in terrestrial and aquatic organisms. Behavior inte- grates many cellular processes and is essential to the viability of the organism, the population and the community. Therefore, observations of behavior provide a unique toxicological perspective - one that links the biochemical and ecological conse- quences of environmental contamination.

Environmental Toxicology and Chemistry↗

Evaluating population expansion of black bears using spatial capture-recapture

The population of American black bears ( Ursus americanus ) in southern New York, USA has been growing and expanding in range since the 1990s. This has motivated a need to anticipate future patterns of range expansion. We conducted a non-invasive, genetic, spatial capture-recapture (SCR) study to estimate black bear density and identify spatial patterns of population density that are potentially associated with range expansion. We collected hair samples in a 2,519-km 2 study area in southern New York with barbed-wire hair snares and identified individuals and measured genetic diversity using 7 microsatellite loci and 1 sex-linked marker. We estimated a mean density of black bears in the region of 13.7 bears/100 km 2 , and detected a slight latitudinal gradient in density consistent with the documented range expansion. However, elevation and the amounts of forest, crop, and developed landcover types did not influence density, suggesting that bears are using a diversity of resources in this heterogeneous landscape outside their previously described distribution. These results provide the first robust baseline estimates for population density and distribution associated with different landcover types in the expanded bear range. Further, genetic diversity was comparable to that of non-expanding black bear populations in the eastern United States, and in combination with the latitudinal density gradient, suggest that the study area is not at the colonizing front of the range expansion. In addition, the diversity of landcover types used by bears in the study area implies a possible lack of constraints for further northern expansion of the black bear range. Our non-invasive, genetic, spatial capture-recapture approach has utility for studying populations of other species that may be expanding in range because SCR allows for the testing of explicit, spatial ecological hypotheses.

New York↗

Biomonitoring using invasive species in a large Lake: Dreissena distribution maps hypoxic zones

Due to cultural eutrophication and global climate change, an exponential increase in the number and extent of hypoxic zones in marine and freshwater ecosystems has been observed in the last few decades. Hypoxia, or low dissolved oxygen (DO) concentrations, can produce strong negative ecological impacts and, therefore, is a management concern. We measured biomass and densities of Dreissena in Lake Erie, as well as bottom DO in 2014 using 19 high frequency data loggers distributed throughout the central basin to validate a three-dimensional hydrodynamic-ecological lake model. We found that a deep, offshore hypoxic zone was formed by early August, restricting the Dreissena population to shallow areas of the central basin. Deeper than 20 m, where bottom hypoxia routinely develops, only young of the year mussels were found in small numbers, indicating restricted recruitment and survival of young Dreissena . We suggest that monitoring Dreissena distribution can be an effective tool for mapping the extent and frequency of hypoxia in freshwater. In addition, our results suggest that an anticipated decrease in the spatial extent of hypoxia resulting from nutrient management has the potential to increase the spatial extent of profundal habitat in the central basin available for Dreissena expansion.

Lake Erie↗

Out of the frying pan and into the fire: Effects of volcanic heat and other stressors on the conservation of a critically endangered plant in Hawaiʻi

Loss of local biodiversity resulting from abrupt environmental change is a significant environmental problem throughout the world. Extinctions of plants are particularly important yet are often overlooked. Drawing from a case in Hawai‘i, a global hotspot for plant and other extinctions, we demonstrate an effort to better understand and determine priorities for the management of an endangered plant (‘Ihi makole or Portulaca sclerocarpa ) in the face of rapid and extreme environmental change. Volcanic heat emissions and biological invasions have anecdotally been suggested as possible threats to the species. We integrated P. sclerocarpa outplanting with efforts to collect geological and ecological data to gauge the role of elevated soil temperatures and invasive grasses in driving P. sclerocarpa mortality and population decline. We measured soil temperature, soil depth, surrounding cover and P. sclerocarpa survivorship over three decades. The abundance of wild P. sclerocarpa decreased by 99.7% from the 1990s to 2021. Only 51% of outplantings persisted through 3–4 years. Binomial regression and structural equation modelling revealed that, among the variables we analysed, high soil temperatures were most strongly associated with population decline. Finding the niche where soil temperatures are low enough to allow P. sclerocarpa survival but high enough to limit other agents of P. sclerocarpa mortality may be necessary to increase population growth of this species.

Hawaii↗

Carnivore re-colonisation: Reality, possibility and a non-equilibrium century for grizzly bears in the southern Yellowstone ecosystem

Most large native carnivores have experienced range contractions due to conflicts with humans, although neither rates of spatial collapse nor expansion have been well characterised. In North America, the grizzly bear (Ursus arctos) once ranged from Mexico northward to Alaska, however its range in the continental USA has been reduced by 95-98%. Under the U. S. Endangered Species Act, the Yellowstone grizzly bear population has re-colonised habitats outside Yellowstone National Park. We analysed historical and current records, including data on radio-collared bears, (1) to evaluate changes in grizzly bear distribution in the southern Greater Yellowstone Ecosystem (GYE) over a 100-year period, (2) to utilise historical rates of re-colonisation to project future expansion trends and (3) to evaluate the reality of future expansion based on human limitations and land use. Analysis of distribution in 20-year increments reflects range reduction from south to north (1900-1940) and expansion to the south (1940-2000). Expansion was exponential and the area occupied by grizzly bears doubled approximately every 20 years. A complementary analysis of bear occurrence in Grand Teton National Park also suggests an unprecedented period of rapid expansion during the last 20-30 years. The grizzly bear population currently has re-occupied about 50% of the southern GYE. Based on assumptions of continued protection and ecological stasis, our model suggests total occupancy in 25 years. Alternatively, extrapolation of linear expansion rates from the period prior to protection suggests total occupancy could take > 100 years. Analyses of historical trends can be useful as a restoration tool because they enable a framework and timeline to be constructed to pre-emptively address the social challenges affecting future carnivore recovery. ?? 2004 The Zoological Society of London.

Idaho, Montana, Wyoming↗

Annual variation of spawning Cutthroat Trout in a small Western USA stream: A case study with implications for the conservation of potamodromous trout life history diversity

Little is known about the variability in the spatial and temporal distribution of spawning potamodromous trout despite decades of research directed at salmonid spawning ecology and the increased awareness that conserving life history diversity should be a focus of management. We monitored a population of fluvial–resident Bonneville Cutthroat Trout Oncorhynchus clarkii utah in a tributary to the Logan River, Utah, from 2006 to 2012 to gain insight into the distribution and timing of spawning and what factors may influence these spawning activities. We monitored Bonneville Cutthroat Trout using redd surveys with multiple observers and georeferenced redd locations. We documented an extended spawning period that lasted from late April to mid‐July. The onset, median, and end of spawning was best predicted by the mean maximum water temperature during the first 13 weeks of the year ( F = 130. 4, df = 5, R 2 = 0.96, P < 0.0001) with spawning beginning and ending earlier in years that had warmer water temperatures prior to spawning. The distribution of redds was clumped each year and the relative density of redds was greater in a reach dominated by dams constructed by beavers Castor canadensis . Both dam failure and construction appeared to be responsible for creating new spawning habitat that was quickly occupied, demonstrating rapid temporal response to local habitat changes. Bonneville Cutthroat Trout appeared to establish and defend a redd for up to 2 d, and spawning most often occurred between similar‐sized individuals. Spawning surveys for potamodromous trout are an underutilized tool that could be used to better understand the distribution and timing of spawning as well as determine the size and trends of the reproducing portion of populations of management concern. Without efforts to document the diversity of this important aspect of potamodromous trout life history, prioritization of conservation will be problematic.

Utah↗

Evaluating multi-level models to test occupancy state responses of Plethodontid salamanders

Plethodontid salamanders are diverse and widely distributed taxa and play critical roles in ecosystem processes. Due to salamander use of structurally complex habitats, and because only a portion of a population is available for sampling, evaluation of sampling designs and estimators is critical to provide strong inference about Plethodontid ecology and responses to conservation and management activities. We conducted a simulation study to evaluate the effectiveness of multi-scale and hierarchical single-scale occupancy models in the context of a Before-After Control-Impact (BACI) experimental design with multiple levels of sampling. Also, we fit the hierarchical single-scale model to empirical data collected for Oregon slender and Ensatina salamanders across two years on 66 forest stands in the Cascade Range, Oregon, USA. All models were fit within a Bayesian framework. Estimator precision in both models improved with increasing numbers of primary and secondary sampling units, underscoring the potential gains accrued when adding secondary sampling units. Both models showed evidence of estimator bias at low detection probabilities and low sample sizes; this problem was particularly acute for the multi-scale model. Our results suggested that sufficient sample sizes at both the primary and secondary sampling levels could ameliorate this issue. Empirical data indicated Oregon slender salamander occupancy was associated strongly with the amount of coarse woody debris (posterior mean = 0.74; SD = 0.24); Ensatina occupancy was not associated with amount of coarse woody debris (posterior mean = -0.01; SD = 0.29) . Our simulation results indicate that either model is suitable for use in an experimental study of Plethodontid salamanders provided that sample sizes are sufficiently large. However, hierarchical single-scale and multi-scale models describe different processes and estimate different parameters. As a result, we recommend careful consideration of study questions and objectives prior to sampling data and fitting models.

PLoS ONE↗

Where has turtle ecology been, and where is it going?

Over 9000 articles have been published on turtles and tortoises (excluding sea turtles) since 1950 according to the Web of Science, including over 8000 contained in a personal bibliography that we analyze in this paper. Research had a slow start from 1900 to 1950, with mostly anecdotal additions to our knowledge until the contributions of F. Cagle and A. Carr took turtle research to new levels as the cofathers of turtle ecology in the middle of the last century. Books written in 1939, 1952, and 1972 that compiled existing literature on turtles in the United States and Canada set the stage for growing interest in turtles. The first global compilation of turtle species did not become available until 1961. Publication frequency increased in the 1960s and especially the 1970s as interest in turtles grew, and a wave of turtle biologists emerged from doctoral degree programs. We briefly review the contributions of scientists who published extensively on turtle ecology in those and later decades up to the present. We also review advances in our knowledge of various topics, including the global distribution of turtle research efforts; changes in our perceptions of turtle species diversity over time; turtle community ecology; sex ratios, sex-determination, and climate change; overwintering behavior; sexual size dimorphism and sexual dichromatism; analyses of population genetics; turtles and vocalization; and the emergence of turtle conservation biology efforts. We conclude with a discussion of future opportunities and challenges for working with turtles.

Herpetologica↗

Spatial capture-recapture: a promising method for analyzing data collected using artificial cover objects

Spatial capture&ndash;recapture (SCR) is a relatively recent development in ecological statistics that provides a spatial context for estimating abundance and space use patterns, and improves inference about absolute population density. SCR has been applied to individual encounter data collected noninvasively using methods such as camera traps, hair snares, and scat surveys. Despite the widespread use of capture-based surveys to monitor amphibians and reptiles, there are few applications of SCR in the herpetological literature. We demonstrate the utility of the application of SCR for studies of reptiles and amphibians by analyzing capture&ndash;recapture data from Red-Backed Salamanders, Plethodon cinereus , collected using artificial cover boards. Using SCR to analyze spatial encounter histories of marked individuals, we found evidence that density differed little among four sites within the same forest (on average, 1.59 salamanders/m 2 ) and that salamander detection probability peaked in early October (Julian day 278) reflecting expected surface activity patterns of the species. The spatial scale of detectability, a measure of space use, indicates that the home range size for this population of Red-Backed Salamanders in autumn was 16.89 m 2 . Surveying reptiles and amphibians using artificial cover boards regularly generates spatial encounter history data of known individuals, which can readily be analyzed using SCR methods, providing estimates of absolute density and inference about the spatial scale of habitat use.

New York↗

A review of methods to estimate cause-specific mortality in presence of competing risks

Estimating cause-specific mortality is often of central importance for understanding the dynamics of wildlife populations. Despite such importance, methodology for estimating and analyzing cause-specific mortality has received little attention in wildlife ecology during the past 20 years. The issue of analyzing cause-specific, mutually exclusive events in time is not unique to wildlife. In fact, this general problem has received substantial attention in human biomedical applications within the context of biostatistical survival analysis. Here, we consider cause-specific mortality from a modern biostatistical perspective. This requires carefully defining what we mean by cause-specific mortality and then providing an appropriate hazard-based representation as a competing risks problem. This leads to the general solution of cause-specific mortality as the cumulative incidence function (CIF). We describe the appropriate generalization of the fully nonparametric staggered-entry Kaplan–Meier survival estimator to cause-specific mortality via the nonparametric CIF estimator (NPCIFE), which in many situations offers an attractive alternative to the Heisey–Fuller estimator. An advantage of the NPCIFE is that it lends itself readily to risk factors analysis with standard software for Cox proportional hazards model. The competing risks–based approach also clarifies issues regarding another intuitive but erroneous “cause-specific mortality” estimator based on the Kaplan–Meier survival estimator and commonly seen in the life sciences literature.

Journal of Wildlife Management↗

Lesser scaup breeding probability and female survival on the yukon flats, Alaska

Information on the ecology of waterfowl breeding in the boreal forest is lacking, despite the boreal region's importance to continental waterfowl populations and to duck species that are currently declining, such as lesser scaup (Aythya affinis). We estimated breeding probability and breeding season survival of female lesser scaup on the Yukon Flats National Wildlife Refuge, Alaska, USA, in 2005 and 2006. We captured and marked 93 lesser scaup with radiotransmitters during prelaying and nesting periods. Although all marked lesser scaup females were paired throughout prelaying and incubation periods, we estimated breeding probability over both years as 0.12 (SE = 0.05, n = 67) using telemetry. Proportion of lesser scaup females undergoing rapid follicle growth at capture in 2006 was 0.46 (SE = 0.11, n = 37), based on concentration of yolk precursors in blood plasma. By combining methods based on telemetry, yolk precursors, and postovulatory follicles, we estimated maximum breeding probability as 0.68 (SE = 0.08, n = 37) in 2006. Notably, breeding probability was positively related to female body mass. Survival of female lesser scaup during the nesting and brood-rearing periods was 0.92 (SE = 0.05) in 2005 and 0.86 (SE = 0.08) in 2006. Our results suggest that breeding probability is lower than expected for lesser scaup. In addition, the implicit assumption of continental duck-monitoring programs that all paired females attempt to breed should be reevaluated. Recruitment estimates based on annual breeding-pair surveys may overestimate productivity of scaup pairs in the boreal forest. ?? The Wildlife Society.

Journal of Wildlife Management↗

Brown treesnake ( Boiga irregularis ) fact sheet for Pacific Island residents and travelers

The brown treesnake is an introduced species on Guam that has become a serious pest. The snakes probably arrived on Guam hidden in ship cargo from the New Guinea area, about 1100 miles to the south. The first sightings were inland from the seaport in the early 1950s. Snakes became conspicuous throughout central Guam by the 1960s, and by 1968, they had probably dispersed throughout the island. In the absence of natural population controls and with vulnerable prey on Guam, the snakes have now become an exceptionally common pest, causing major ecological and economic damage on the island.

Fact Sheet↗

Relative importance of natural disturbances and habitat degradation on snail kite population dynamics

Natural disturbances and habitat degradation are major factors influencing the dynamics and persistence of many wildlife populations, yet few large-scale studies have explored the relative influence of these factors on the dynamics and persistence of animal populations. We used longterm demographic data and matrix population models to examine the potential effects of habitat degradation and natural disturbances on the dynamics of the endangered snail kite Rostrhamus sociabilis in Florida, USA. We found that estimates of stochastic population growth rate were low (0.90). Population growth rate (??) during the first half or our study period (1992 to 1998) was substantially greater than during the second half (1999 to 2005). These 2 periods were characterized by contrasting hydrological conditions. Although ?? was most sensitive to changes in adult survival, the analysis of life table response experiments revealed that a reduction in fertility of kites accounted for >80% of the observed decline in population growth rate. We examined the possibility that the reduction in ?? was caused by (1) habitat degradation due to management, (2) an increase in frequency of moderate drying events in recent years, and (3) both habitat degradation and an increase in frequency of moderate drying events. Our results suggest that both factors could potentially contribute to a large decrease in population growth rate. Our study highlights the importance of simultaneously considering short- and long-term effects of disturbances when modeling population dynamics. Indeed, focusing exclusively on one type of effect may be misleading to both our understanding of the ecological dynamics of the system and to management. The relevance of our results to management is heightened because the snail kite has been selected as a key performance measure of one of the most ambitious ecosystem restoration projects ever undertaken. ?? Inter-Research 2008.

Endangered Species Research↗

Acute survivorship of the deep-sea coral Lophelia pertusa from the Gulf of Mexico under acidification, warming, and deoxygenation

Changing global climate due to anthropogenic emissions of CO2 are driving rapid changes in the physical and chemical environment of the oceans via warming, deoxygenation, and acidification. These changes may threaten the persistence of species and populations across a range of latitudes and depths, including species that support diverse biological communities that in turn provide ecological stability and support commercial interests. Worldwide, but particularly in the North Atlantic and deep Gulf of Mexico, Lophelia pertusa forms expansive reefs that support biological communities whose diversity rivals that of tropical coral reefs. In this study, L. pertusa colonies were collected from the Viosca Knoll region in the Gulf of Mexico (390 to 450 m depth), genotyped using microsatellite markers, and exposed to a series of treatments testing survivorship responses to acidification, warming, and deoxygenation. All coral nubbins survived the acidification scenarios tested, between pH of 7.67 and 7.90 and aragonite saturation states of 0.92 and 1.47. However, net calcification generally declined with respect to pH, though a disparate response was evident where select individuals net calcified and others exhibited net dissolution near a saturation state of 1. Warming and deoxygenation both had negative effects on survivorship, with up to 100% mortality observed at temperatures above 14&deg;C and oxygen concentrations of approximately 1.5 ml&middot; l&minus;1. These results suggest that, over the short-term, climate change and OA may negatively impact L. pertusa in the Gulf of Mexico, though the potential for acclimation and the effects of genetic background should be considered in future research.

Gulf of Mexico↗

A tale of two valleys: Endangered species policy and the fate of the giant gartersnake

By the mid-20th Century, giant gartersnakes (Thamnophis gigas) had lost more than 90% of their Central Valley marsh habitat and were extirpated from more than two-thirds of their range. This massive habitat loss led to their inclusion in the inaugural list of rare species under the California Endangered Species Act (CESA). Listing under the CESA provided giant gartersnakes legal protection and mechanisms for recovery, and subsequent listing under the U.S. Endangered Species Act (U.S. ESA) further fortified these protections. But how effective has listing under these endangered species acts (ESAs) been at achieving their goal of giant gartersnake recovery? Herein, we review relevant aspects of giant gartersnake ecology, illustrate how listing has benefitted giant gartersnakes and what challenges have been faced in slowing declines and recovering populations, and chart a course towardprovide options for improved conservation, management, and recovery of giant gartersnakes. Although listing as threatened under both state and federal ESAs has not yet achieved recovery of giant gartersnakes, the increased knowledge gained and mechanisms for protecting giant gartersnake habitat on private and public lands developed over the past 50 years has improved conservation of this endemic California snake.

California↗

Balancing model generality and specificity in management-focused habitat selection models for Gunnison sage-grouse

Identifying, protecting, and restoring habitats for declining wildlife populations is foundational to conservation and recovery planning for any species at risk of decline. Resource selection analysis is a key tool to assess habitat and prescribe management actions. Yet, it can be challenging to map suitable resource conditions across a wide range of ecological contexts and use the resulting models to identify effective and universal habitat improvement actions. We developed a management-centric modeling approach that sought to balance the need to evaluate the consistency of key habitat conditions and improvement actions across multiple, distinct populations, while allowing context-specific environmental variables and spatial scales to nuance selection responses that form the basis of location-specific management prescriptions. To demonstrate this approach, we developed a set of habitat selection models for Gunnison sage-grouse ( Centrocercus minimus ), a threatened species under the U.S. Endangered Species Act. Conservation, species recovery, and habitat management efforts are needed in six isolated satellite populations (San Miguel, Crawford, Piñon Mesa, Dove Creek, Cerro Summit-Cimarron-Sims, and Poncha Pass) where environmental conditions differ, and the already small number of birds are declining. We used multi-scale and seasonal resource selection analyses to quantify relationships between environmental conditions and sites used by animals. All models included key habitat variables often altered through management actions to assess their differential influences across models. We found important similarities and differences among satellites, indicating that, although some rules of thumb are generally well-grounded, the consideration of population-specific environmental differences could increase the efficiency of local habitat improvement actions. Sage-grouse also had diverse responses to resource conditions at different scales, indicating that regional spatial (e.g., landscape) and local patch scale can differentially influence expected habitat improvements associated with where such management actions are implemented. Although context variables such as topography cannot be manipulated, sage-grouse associations revealed information that could guide the siting of improvement actions. This approach to balancing management objectives associated with habitat assessment may benefit spatially-structured populations with different environmental contexts and species with complex habitat needs and associations.

Colorado↗

Looking to the Future: Key points for sustainable management of Northern Great Plains grasslands

The grasslands of the northern Great Plains region of North America are considered endangered ecosystems and priority conservation areas yet have great ecological and economic importance. Grasslands in the northern Great Plains (referred to as NGP from this point) are no longer self-regulating adaptive systems. The challenges to these grasslands are widespread and serious (e.g., climate change, invasive species, fragmentation, altered disturbance regimes, and anthropogenic chemical loads). Because the challenges facing the region are dynamic, complex, and persistent, a paradigm shift in how we approach restoration and management of the grasslands in the northern Great Plains is imperative. The goal of this paper is to highlight 4 key points for land managers and restoration practitioners to consider when planning management or restoration actions. First, we discuss the appropriateness of using historical fidelity as a restoration or management target because of changing climate, widespread pervasiveness of invasive species, the high level of fragmentation, and altered disturbance regimes. Second, we highlight ecosystem resilience and long-term population persistence as alternative targets. Third, because the NGP is so heavily impacted with anthropogenic chemical loading, we discuss the risks of ecological traps and extinction debt. Finally, we highlight the importance of using adaptive management and having patience during restoration and management. Consideration of these 4 points will help management and restoration of grasslands move toward a more successful and sustainable future. Although we specifically focus on the northern Great Plains of North America, these same issues and considerations apply to grasslands globally as well as many other ecosystems.

Restoration Ecology↗

Development of new information to inform fish passage decisions at the Yale and Merwin hydro projects on the Lewis River, Washington—Final report, 2018

The reintroduction of extirpated salmonids to historically occupied areas is becoming increasingly common as a conservation and recovery strategy. Often, reintroductions are implemented after the factors that originally led to species extirpation have been reduced, eliminated, or mitigated. For anadromous Oncorhynchus spp. (Pacific salmon) and O. mykiss (steelhead), addressing barriers to migration, which have been a primary factor in the decline and extirpation of many populations, has been an integral component of recovery efforts. Mitigation has included barrier removal, developing fish passage opportunities, and (or) actively trapping and hauling juvenile and adult anadromous salmonids around barriers. With any reintroduction, there are a number of concerns regarding the ecological impact of the reintroduction efforts. Three of the main tenets to consider when assessing reintroductions are (1) the potential benefits if reintroduction is successful, (2) the biological risk through interactions of reintroduced strains with existing populations, and (3) the factors potentially limiting a successful reintroduction. This report focuses on information and data to address the second and third factors as they apply to the upper Lewis River in Washington. The upper Lewis River historically contained wild populations of O. tshawytscha (Chinook salmon), O. kisutch (coho salmon), and steelhead. These populations were extirpated after completion of hydropower facilities on Lake Merwin in 1932, Yale Lake in 1953, and Swift Reservoir in 1958, which prevented fish from migrating to and from ocean environments. However, recent licenses issued by the Federal Energy Regulatory Commission require the installation and operation of an upstream fish passage facility at Lake Merwin and a downstream fish passage facility at Swift Reservoir. The licenses were developed in consultation with the National Marine Fisheries Service and the U.S. Fish and Wildlife Service. The overarching goal of this fish reintroduction project is to establish viable, self-sustaining, naturally reproducing, harvestable populations of spring Chinook salmon, winter steelhead, and coho salmon at levels higher than minimum viable populations. This report uses a combination of field data and existing information to address six key objectives related to the reintroduction in order to inform decisions about passage at the Yale Lake and Lake Merwin hydropower projects. The objectives are (1) a review of information relevant to anadromous fish reintroduction and full fish passage; (2) a habitat assessment of tributaries to Swift Reservoir, Yale Lake, and Lake Merwin; (3) a field study to assess adult potential for spawning success; (4) an assessment of juvenile production and outmigration success; (5) a Lake Merwin predator impact study; and (6) a set of studies assessing interactions between anadromous and resident fish.

Washington↗