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USGS2025

Assessing the Feasibility of Reintroducing San Francisco Gartersnakes ( Thamnophis sirtalis tetrataenia ) to La Honda Creek Open Space Preserve, San Mateo County, California

Reintroductions are used worldwide to increase the viability of species and restore native ecological communities. The success of reintroductions is usually judged by the establishment of self-sustaining populations, restoration of naturally occurring ecological communities, and the species resuming its ecological function. Recovery for the endangered San Francisco gartersnake (SFGS, Thamnophis sirtalis tetrataenia ), a subspecies with a small range in San Mateo and Santa Cruz counties in California, will likely require reintroduction and establishment of new populations within its historical range. La Honda Creek Open Space Preserve (LHC), managed by the Midpeninsula Regional Open Space District (MROSD), is one potential site for the reintroduction of SFGS. The La Honda Creek Open Space Preserve is a preserve managed for wildlife, recreation, grazing, and agriculture located near extant populations of SFGS inhabiting other open space preserves managed by MROSD (Cloverdale Ranch Open Space Preserve [CR]; Russian Ridge Open Space Preserve [RR]). We compared the habitat and prey communities at LHC to nearby open space preserves that support extant SFGS populations. Based on pond surveys done annually since 2008, the occurrence of California red-legged frogs ( Rana draytonii ), Sierran chorus frogs ( Pseudacris sierra ), and Pacific newts ( Taricha spp.) at LHC indicates a similar prey community at this preserve to those at CR and RR. Likewise, the landscape at LHC is a similar mosaic of wetlands, open grassland, shrub-dominated scrub, and coast redwood ( Sequoia sempervirens ) and Douglas fir ( Pseudotsuga menziesii ) forest that meets the habitat requirements for the life history of SFGS at CR and RR. One difference between LHC and preserves with SFGS populations is the lack of vegetative cover immediately adjacent to some wetlands at LHC, which could affect the ability of SFGS to disperse from wetlands and find terrestrial refuges. To evaluate alternative reintroduction strategies, we simulated population viability for a fixed number of SFGS released at LHC into one to six subpopulations (where each wetland represents a subpopulation) over a period from 5 to 20 years. Population simulations indicated that the highest average viability (in other words, the lowest probability of quasi-extinction) occurred when all SFGS were released into a single subpopulation and releases continued annually for 15 to 20 years. Our results indicate that LHC is a good candidate for reintroducing SFGS with suitable habitat, climate, and prey for this snake subspecies. Supporting SFGS populations at LHC could require habitat management to provide sufficient vegetative cover in the terrestrial environment near wetlands. Maintaining genetic diversity in the reintroduced population will also be paramount to ensure negative effects of inbreeding and homozygosity do not affect population viability.

California↗

USGS2005

Mississippian Barnett Shale, Fort Worth basin, north-central Texas: Gas-shale play with multi-trillion cubic foot potential

The Mississippian Barnett Shale serves as source, seal, and reservoir to a world-class unconventional natural-gas accumulation in the Fort Worth basin of north-central Texas. The formation is a lithologically complex interval of low permeability that requires artificial stimulation to produce. At present, production is mainly confined to a limited portion of the northern basin where the Barnett Shale is relatively thick (>300 ft; >92 m), organic rich (present-day total organic carbon > 3.0%), thermally mature (vitrinite reflectance > 1.1%), and enclosed by dense limestone units able to contain induced fractures. The most actively drilled area is Newark East field, currently the largest gas field in Texas. Newark East is 400 mi2 (1036 km2) in extent, with more than 2340 producing wells and about 2.7 tcf of booked gas reserves. Cumulative gas production from Barnett Shale wells through 2003 was about 0.8 tcf. Wells in Newark East field typically produce from depths of 7500 ft (2285 m) at rates ranging from 0.5 to more than 4 mmcf/day. Estimated ultimate recoveries per well range from 0.75 to as high as 7.0 bcf. Efforts to extend the current Barnett play beyond the field limits have encountered several challenges, including westward and northward increases in oil saturation and the absence of lithologic barriers to induced fracture growth. Patterns of oil and gas occurrence in the Barnett, in conjunction with maturation and burial-history data, indicate a complex, multiphased thermal evolution, with episodic expulsion of hydrocarbons and secondary cracking of primary oils to gas in portions of the basin where paleotemperatures were especially elevated. These and other data imply a large-potential Barnett resource for the basin as a whole (possibly > 200 tcf gas in place). Recent assessment by the U.S. Geological Survey suggests a mean volume of 26.2 tcf of undiscovered, technically recoverable gas in the central Fort Worth basin. Recovery of a significant portion of this undiscovered resource will require continued improvements in geoscientific characterization and approaches to stimulation of the Barnett reservoirs. Copyright ?? 2005. The American Association of Petroleum Geologists. All rights reserved.

American Association of Petroleum Geologists Bulle↗

USGS1998

Estimates of annual survival probabilities for adult Florida manatees ( Trichechus manatus latirostris )

The population dynamics of large, long-lived mammals are particularly sensitive to changes in adult survival. Understanding factors affecting survival patterns is therefore critical for developing and testing theories of population dynamics and for developing management strategies aimed at preventing declines or extinction in such taxa. Few studies have used modern analytical approaches for analyzing variation and testing hypotheses about survival probabilities in large mammals. This paper reports a detailed analysis of annual adult survival in the Florida manatee (Trichechus manatus latirostris), an endangered marine mammal, based on a mark-recapture approach. Natural and boat-inflicted scars distinctively 'marked' individual manatees that were cataloged in a computer-based photographic system. Photo-documented resightings provided 'recaptures.' Using open population models, annual adult-survival probabilities were estimated for manatees observed in winter in three areas of Florida: Blue Spring, Crystal River, and the Atlantic coast. After using goodness-of-fit tests in Program RELEASE to search for violations of the assumptions of mark-recapture analysis, survival and sighting probabilities were modeled under several different biological hypotheses with Program SURGE. Estimates of mean annual probability of sighting varied from 0.948 for Blue Spring to 0.737 for Crystal River and 0.507 for the Atlantic coast. At Crystal River and Blue Spring, annual survival probabilities were best estimated as constant over the study period at 0.96 (95% CI = 0.951-0.975 and 0.900-0.985, respectively). On the Atlantic coast, where manatees are impacted more by human activities, annual survival probabilities had a significantly lower mean estimate of 0.91 (95% CI = 0.887-0.926) and varied unpredictably over the study period. For each study area, survival did not differ between sexes and was independent of relative adult age. The high constant adult-survival probabilities estimated for manatees in the Blue Spring and Crystal River areas were consistent with current mammalian life history theory and other empirical data available for large, long-lived mammals. Adult survival probabilities in these areas appeared high enough to maintain growing populations if other traits such as reproductive rates and juvenile survival were also sufficiently high lower and variable survival rates on the Atlantic coast are cause for concern.

Ecology↗

USGS2002

Components of productivity in black-legged kittiwakes Rissa tridactyla: Response to supplemental feeding

In contrast to the high productivity of black‐legged kittiwakes in Britain, kittiwakes at many colonies in Alaska have failed chronically to reproduce since the mid 1970s. To determine if food is limiting productivity and, if so, at what stages of nesting food shortages are most severe, in 1996 and 1997 we supplementally fed kittiwakes nesting on an abandoned building. The effects of feeding were stronger in 1997 than in 1996, possibly because naturally occurring prey were of poorer quality in 1997. Consumption of supplemental herring declined as egg laying approached then increased slowly during incubation and more rapidly after hatching. All of the six components of productivity we studied were improved by supplemental feeding to some degree. Supplemental food did not significantly alter laying success in either year, although fed pairs bred at slightly higher rates than unfed pairs in 1997, the poorer food year. In 1996 and 1997, extra food noticeably increased clutch size and hatching success, but significantly so only in 1997. Fledging success and productivity were substantially augmented by feeding in both years. Fed pairs fledged twice as many chicks per nest as did unfed pairs in 1996 and three times as many in 1997. Fed and unfed pairs lost most of their potential productivity through the inability to hatch eggs, and secondarily because of their poor success at raising chicks. The benefits of supplemental feeding did not carry over from one stage of breeding to another. Pairs cut off from supplemental food after laying or hatching performed similarly to pairs that had not been previously fed. This study provides benchmark values of breeding performance attainable by kittiwakes in Alaska under optimal conditions. These values are comparable to highly productive colonies in Britain and suggest that differences in life‐history characteristics between Pacific and Atlantic breeding populations are primarily controlled by food supply.

Alaska↗

USGS2005

Status and conservation of the fish fauna of the Alabama River system

The Alabama River system, comprising the Alabama, Coosa, and Tallapoosa subsystems, forms the eastern portion of the Mobile River drainage. Physiographic diversity and geologic history have fostered development in the Alabama River system of globally significant levels of aquatic faunal diversity and endemism. At least 184 fishes are native to the system, including at least 33 endemic species. During the past century, dam construction for hydropower generation and navigation resulted in 16 reservoirs that inundate 44% of the length of the Alabama River system main stems. This extensive physical and hydrologic alteration has affected the fish fauna in three major ways. Diadromous and migratory species have declined precipitously. Fish assemblages persisting downstream from large main-stem dams have been simplified by loss of species unable to cope with altered flow and water quality regimes. Fish populations persisting in the headwaters and in tributaries to the mainstem reservoirs are now isolated and subjected to effects of physical and chemical habitat degradation. Ten fishes in the Alabama River system (including seven endemic species) are federally listed as threatened or endangered. Regional experts consider at least 28 additional species to be vulnerable, threatened, or endangered with extinction. Conserving the Alabama River system fish fauna will require innovative dam management, protection of streams from effects of urbanization and water supply development, and control of alien species dispersal. Failure to manage aggressively for integrity of remaining unimpounded portions of the Alabama River system will result in reduced quality of natural resources for future generations, continued assemblage simplification, and species extinction.

Book chapter↗

USGS2005

Status and conservation of the fish fauna of the Alabama River system

American Fisheries Society Symposium↗

USGS2005

Forestry practices and aquatic biodiversity: Fish

In the Pacific Northwest, fish communities are found in a diverse array of aquatic habitats ranging from the large coastal rivers of the temperate rainforests, to the fragmented and sometimes ephemeral streams of the xeric interior basins, and high-elevation streams and lakes in the mountainous areas (Rieman et al. 2003). Only high-elevation lakes and streams isolated above barriers to fish passage remained historically devoid of fish because they were never invaded following Pleistocene glaciation (Smith 1981). Despite this widespread distribution and once great population abundances, taxonomic diversity of fishes in these forested systems is naturally lower than in aquatic habitats in the eastern U.S. (Reeves, Bisson, and Dambacher 1998). Interactions among factors that influence species richness in aquatic systems (e.g., basin size, long-term stability of habitat, and barriers to colonization; Smith 1981) continue to influence the occurrence and persistence of fishes in these systems today. Consequently, the larger low-elevation rivers and estuaries support the greatest variety of fish species. In the high-elevation tributary streams, fish communities are less complex because these aquatic systems were less climatically and geologically stable, and fish populations were smaller and more prone to local extirpation. Furthermore, barriers to fish passage inhibited dispersal and colonization (Smith 1981). Streams in forested landscapes generally support salmon and trout, Oncorhynchus spp., whitefish Prosopium spp., sculpins Cottus spp., suckers Catostomus spp., and minnows (Cyprinidae), but in some of the colder streams, chars (e.g., Salvelinus confluentus and Salvelinus malma ) and lampreys (Petromyzontidae)may also occur (Rieman et al. 2003). Although biodiversity defined in terms of fish species richness is low in the Pacific Northwest, intraspecific variability is high, and polytypic fish species are common in the diverse aquatic habitats of the region. For example, the salmonids in the coastal rivers and streams, and the larger interconnected streams, rivers, and lakes of the interior exhibit a variety of ecotypes and migratory life histories (Healey 1986; Trotter 1989; Larson and McIntire 1993; Northcote 1997). This life-history variation appears to be associated with adaptation to spatial and temporal variation in environment (e.g., Schaffer and Elson 1975; Carl and Healey 1984; Beacham and Murray 1987), and there is some evidence of the genetic heritability of life-history traits (Carl and Healey 1984; Gharrett and Smoker 1993; Hankin, Nicholas, and Downey 1993). Persistence of any level of biological organization (e.g., life-history type, population, metapopulation, subspecies, species, community) is related to the interaction of environmental and biological components, and intraspecific diversity is a means of spreading risk ( sensu den Boer 1968) of extirpation in dynamic environments (Gresswell 1999). Unfortunately, despite the broad distribution and extensive intraspecific diversity, persistence of native fishes is uncertain in the Pacific Northwest. Many populations of anadromous salmonids, once synonymous with vigorous biological communities throughout the region, are threatened with extinction (Nehlsen, Williams, and Lichatowich 1991; Frissell 1993; Thurow, Lee, and Rieman 1997). Furthermore, over half of the native taxa in the Columbia River Basin are either listed under the Endangered Species Act, are being considered for listing, or are deemed sensitive by the management agencies (Lee et al. 1997; Thurow, Lee, and Rieman 1997). Potamodromous species like bull trout Salvelinus confluentus are estimated to occur as strong populations in less than 5% of their potential range (Rieman, Lee, and Thurow 1997). Although not currently listed under the endangered species list, the coastal cutthroat trout Oncorhynchus clarki is managed as a sensitive species in Oregon and California (Hall, Bisson, and Gresswell 1997). Native non-game fishes have rarely been monitored, but populations of species such as large-scale suckers ( Catostomus macrocheilus ), squawfish ( Ptychocheilus umpquae ), and Pacific lamprey ( Lampetra tridentata ) also are declining in some drainages (Oregon Department of Fish and Wildlife, unpublished data).

Pacific Northwest↗

USGS2021

Appendix C: Central sands lakes study technical report: Modeling documentation

This report provides the necessary documentation of the numerical models developed for the Central Sands Lake study in central Wisconsin and will be included as a technical appendix in the report to the Wisconsin State Legislature by the Wisconsin Department of Natural Resources (WDNR) in response to 2017 Wisconsin Act 10. This legislation directed WDNR to determine whether existing and potential groundwater withdrawals are causing or are likely to cause significant reduction of mean seasonal water levels at Pleasant Lake, Long Lake, and Plainfield Lake (s. 281.34(7m)(2)(b), Wis. Stats.) in Waushara County, Wisconsin. To evaluate the potential hydrologic connection between groundwater withdrawals and the nearby study lakes, hydrologic models were created that focused on the lakes of interest and yet were large enough to cover a broad enough region to extend to the major hydrologic boundaries of the natural flow system. The areas near the lakes require finer-scale grid discretization (or spacing) to better represent the lakes and streams in the model, but also need to cover a large enough area to include the groundwater withdrawal locations that have the potential to cause reduction in water levels in the lakes. To accomplish these goals, three groundwater models were created: a regional model extending to major hydrologic boundaries; and two inset models, inheriting boundaries from the regional model but focused near the lakes. Each of the inset models, in turn, included a detailed area close to the lakes surrounded by an area at the same spatial scale as the regional model (Figure 1). To support WDNR in evaluating the connection between groundwater withdrawals and lake levels, a representative time period was required over which to compare land use with and without irrigated agriculture and for WDNR to evaluate potential lake stage and flux changes related to irrigated agriculture. WDNR chose the climate period of 1981-2018 to be representative of a typical period and provided two land use scenarios—one with no irrigated agriculture and one with assumed crop rotations similar to current conditions—to simulate with groundwater models to, then, compare lake responses with. As a result, simulations over this climate record are not intended to recreate the history of 1981-2018 because land use changed over that time. These runs are, instead, intended to provide a basis on which to compare land use with and without irrigation-related groundwater withdrawals based on the current arrangement of land use and a varied climatic record. Groundwater withdrawals focused on irrigated-agriculture-related water use because greater than 95% of groundwater withdrawal in the two inset models around the study lakes is for irrigated agriculture water use. The period of 2012-2018 was used for parameter estimation (synonymously referred to as “history matching”) for the groundwater models. This time period was chosen because it includes the most complete water use records to simulate groundwater withdrawals. History matching was performed using groundwater elevations, lake stages, and streamflow observations over the 2012-2018 time period and processed observations derived from those raw data. Climatic data were incorporated into the model using a soil-water balance approach. A soil water balance model was constructed at the scale of the regional groundwater model to both calculate recharge based on land use and climate, and in the long-term climate-period runs, to estimate water use required by irrigated agriculture to apply as well boundary conditions in the groundwater model in the absence of reported water use values over that period.

Wisconsin↗

USGS2007

The Yellowstone hotspot, Greater Yellowstone ecosystem, and human geography

Active geologic processes associated with the Yellowstone hotspot are fundamental in shaping the landscapes of the greater Yellowstone ecosystem (GYE), a high volcanic plateau flanked by a crescent of still higher mountainous terrain. The processes associated with the Yellowstone hotspot are volcanism, faulting, and uplift and are observed in the geology at the surface. We attribute the driving forces responsible for the northeastward progression of these processes to a thermal plume rising through the Earth’s mantle into the base of the southwest-moving North American plate. This progression began 16 million years ago (Ma) near the Nevada-Oregon border and arrived at Yellowstone about 2 Ma. Before arrival of the hotspot, an older landscape existed, particularly mountains created during the Laramide orogeny about 70–50 Ma and volcanic terrain formed by Absaroka andesitic volcanism mostly between 50–45 Ma. These landscapes were more muted than the present, hotspot-modified landscape because the Laramide-age mountains had worn down and an erosion surface of low relief had developed on the Absaroka volcanic terrain. The Yellowstone Plateau was built by hotspot volcanism of rhyolitic lavas and caldera-forming rhyolite tuffs (ignimbrites). Streams eroding back into the edges of this plateau have created scenic waterfalls and canyons such as the Grand Canyon of the Yellowstone and Lewis Canyon. Rhyolite is poor in plant nutrients and forms sandy, well-drained soils that support the monotonous, fire-adapted lodgepole pine forests of the Yellowstone Plateau. Non-rhyolitic rocks surround this plateau and sustain more varied vegetation, including spruce, fir, and whitebark pine forests broken by grassy meadows. Heat from the hotspot rises upward and drives Yellowstone’s famed geysers, hot springs, and mudpots. These thermal waters are home to specialized, primitive ecosystems, rich in algae and bacteria. The rock alteration associated with hydrothermal systems creates the bright colors of Yellowstone’s Grand Canyon. Basin-and-range-style faulting has accompanied migration of the hotspot to Yellowstone and formed the linear mountains and valleys that occur north and south of the hotspot track, which is the present-day eastern Snake River Plain. High rates of basin-and-range faulting occurred adjacent to the migrating Yellowstone hotspot, creating distinctive landscapes within the GYE such as the Teton Range/Jackson Hole, with characteristic rugged, forested ranges and adjacent flat-floored grassy valleys. The difference in altitude between the mountains and valleys provides a topographic gradient in which vegetation maturation advances with altitude; animal-migration patterns also follow this trend. The valleys provide natural meadows, agricultural land, town sites, and corridors for roads. Uplift of the GYE by as much as 1 km (3,000 ft) during the last 5 million years has resulted in ongoing erosion of deep, steep-walled valleys. Many prominent ecological characteristics of Yellowstone derive from this hotspot-induced uplift, including the moderate- to high- altitude terrain and associated cool temperatures and deep snowfall. Modern and Pleistocene climate and associated vegetation patterns strongly relate to the topography created by the hotspot and its track along the eastern Snake River Plain. Winter air masses from the moist northern Pacific Ocean traverse the topographic low of the Snake River Plain to where orographic rise onto the Yellowstone Plateau and adjacent mountains produces deep snow. A winter precipitation shadow forms on the lee (eastern) sides of the GYE. During Pleistocene glacial times, this moisture conduit provided by the hotspot-track-produced ice-age glaciers that covered the core of the present GYE. These glaciers sculpted bedrock and produced glacial moraines that are both forested and unforested, sand and gravel of ice-marginal streams and outwash gravels that are commonly covered with sagebrush-grassland, and silty lake sediments that are commonly covered by lush grassland such as Hayden Valley. The effects of the Yellowstone hotspot also profoundly shaped the human history in the GYE. Uplift associated with the hotspot elevates the GYE to form the Continental Divide, and streams drain radially outward like spokes from a hub. Inhabitants of the GYE 12,000–10,000 years ago, as well as more recent inhabitants, followed the seasonal green-up of plants and migrating animals up into the mountain areas. During European immigration, people settled around Yellowstone in the lower parts of the drainages and established roads, irrigation systems, and cultural associations. The core Yellowstone highland is too harsh for agriculture and inhospitable to people in the winter. Beyond this core, urban and rural communities exist in valleys and are separated by upland areas. The partitioning inhibits any physical connection of communities, which in turn complicates pursuit of common interests across the whole GYE. Settlements thus geographically isolated evolved as diverse, independent communities

Idaho, Montana, Utah, Wyoming↗

USGS2019

Size selectivity of sampling gears used to sample Kokanee

Kokanee Oncorhynchus nerka provide valued recreational fisheries and also serve as a prey resource for economically, socially, and ecologically important fishes. As such, management of kokanee is a major focus of natural resource agencies. Kokanee are typically monitored using midwater trawls, but the interpretation of data collected using midwater trawls is difficult due to the unknown size selectivity of the gear. We sought to assess the length selectivity of midwater trawls by comparing estimates obtained from midwater trawls with estimates obtained from gill nets adjusted for size selectivity. Experimental curtain gill nets and midwater trawls were used in conjunction to sample kokanee in seven lentic systems in Idaho. The size selectivity of gill nets was estimated by accounting for the probability of encounter and the probability of retention. Estimates of size selectivity were then used to adjust the length distribution of fish sampled in gill nets. The adjusted length distribution of fish sampled in gill nets was compared with estimates obtained from midwater trawls to identify potential size selectivity of midwater trawls. A pattern of size selectivity was apparent for both sampling techniques. The average length of kokanee sampled with midwater trawls was 111 mm; whereas, kokanee sampled with gill nets had a mean length of 235 mm. Our results suggest experimental gill nets are useful for common sampling of kokanee (e.g., trend monitoring) because the gear is less size selective than midwater trawls and is adjustable for size selectivity. However, midwater trawls are likely the best gear for addressing questions associated with early life history. Overall, our results provide a better understanding of gill-net and midwater trawl selectivity and ultimately improve the ability to sample and manage the species.

North American Journal of Fisheries Management↗

USGS2017

Macroinvertebrate communities evaluated prior to and following a channel restoration project in Silver Creek, Blaine County, Idaho, 2001-16

The U.S. Geological Survey, in cooperation with Blaine County and The Nature Conservancy, evaluated the status of macroinvertebrate communities prior to and following a channel restoration project in Silver Creek, Blaine County, Idaho. The objective of the evaluation was to determine whether 2014 remediation efforts to restore natural channel conditions in an impounded area of Silver Creek caused declines in local macroinvertebrate communities. Starting in 2001 and ending in 2016, macroinvertebrates were sampled every 3 years at two long-term trend sites and sampled seasonally (spring, summer, and autumn) in 2013, 2015, and 2016 at seven synoptic sites. Trend-site communities were collected from natural stream-bottom substrates to represent locally established macroinvertebrate assemblages. Synoptic site communities were sampled using artificial (multi-plate) substrates to represent recently colonized (4–6 weeks) assemblages. Statistical summaries of spatial and temporal patterns in macroinvertebrate taxonomic composition at both trend and synoptic sites were completed. The potential effect of the restoration project on resident macroinvertebrate populations was determined by comparing the following community assemblage metrics: Total taxonomic richness (taxa richness); Total macroinvertebrate abundance (total abundance); Ephemeroptera, Plecoptera, Trichoptera (EPT) richness; EPT abundance; Simpson’s diversity; and Simpson’s evenness for periods prior to and following restoration. A significant decrease in one or more metric values in the period following stream channel restoration was the basis for determining impairment to the macroinvertebrate communities in Silver Creek. Comparison of pre-restoration (2001–13) and post‑restoration (2016) macroinvertebrate community composition at trend sites determined that no significant decreases occurred in any metric parameter for communities sampled in 2016. Taxa and EPT richness of colonized assemblages at synoptic sites increased significantly from pre-restoration in 2013 to post-restoration in 2015 and 2016. Similarly, total and EPT abundances at synoptic sites showed non-significant increases from 2013 to 2015 and 2016. Significant seasonal differences in macroinvertebrate assemblages were apparent at synoptic site locations and likely reflected typical life-history patterns of increased insect emergence and development in the late spring and early summer months. Taxa and EPT richness were each significantly higher in spring and summer than in autumn, and total abundances were significantly higher in spring than in summer and autumn. No significant differences in community diversity or evenness of colonized communities were noted at synoptic site locations between pre- and post-restoration years or among seasons. Select community-metric results from the trend- and synoptic ‑ site sampling indicated that the Silver Creek restoration effort in 2014 did not result in a significant decline in resident macroinvertebrate communities.

Idaho↗

USGS2021

Climate change may cause shifts in growth and instantaneous natural mortality of American Shad throughout their native range

American Shad Alosa sapidissima is an anadromous species with populations ranging along the U.S. Atlantic coast. Past American Shad stock assessments have been data limited and estimating system-specific growth parameters or instantaneous natural mortality ( M ) was not possible. This precluded system-specific stock assessment and management due to reliance on these parameters for estimating other population dynamics (such as yield per recruit). Furthermore, climate-informed biological reference points remain a largely unaddressed need in American Shad stock assessment. Population abundance estimates of American Shad and other species often rely heavily on M derived from von Bertalanffy growth function (VBGF) parameters. Therefore, we developed Bayesian hierarchical models to estimate coastwide, regional, and system-specific VBGF parameters and M using data collected from 1982 to 2017. We tested predictive performance of models that included effects of various climate variables on VBGF parameters within these models. System-specific models were better supported than regional or coast-wide models. Mean asymptotic length ( L ∞ ) decreased with increasing mean annual sea surface temperature (SST) and degree days (DD) experienced by fish during their lifetime. Although uncertain, K (Brody growth coefficient) decreased over the same range of lifetime SST and DD. Assuming no adaptation, we projected changes in VBGF parameters and M through 2099 using modeled SST from two climate projection scenarios (Representative Concentration Pathways 4.5 and 8.5). We predicted reduced growth under both scenarios, and M was projected to increase by about 0.10. It is unclear how reduced growth and increased mortality may influence population productivity or life history adaptation in the future, but our results may inform stock assessment models to assess those trade-offs.

Transactions of the American Fisheries Society↗

USGS1961

Palæomagnetic evidence relevant to a change in the earth's radius

INTEREST in the hypothesis that the Earth's radius has increased during geological history has been renewed in recent years because of several sets of independent observations and interpretations. From studies of the deformation of mountain ranges and the distribution of faults and oceans, Carey 1 proposes an increase in the Earth's area of 45 per cent since the Palæozoic era. Heezen 2 similarly interprets submarine topography as indicating that the oceans may be immense rift valleys formed by a pulling apart of the continents as the Earth expanded. Using a different approach, Egyed 3,4 infers a rate of increase of the Earth's radius of 0.4–0.8 mm. per year. This calculation is based on a decrease in the total amount of continental area covered by oceans during the past 400 million years, as determined palæographically. Egyed 4 has also pointed out the desirability of using palæomagnetic data to test this hypothesis.

Nature↗

USGS2003

Potential for deep basin-centered gas accumulation in Travis Peak (Hosston) Formation, Gulf Coast Basin, U.S.A.

The potential of Lower Cretaceous sandstones of the Travis Peak Formation in the northern Gulf Coast Basin to harbor a basin-centered gas accumulation was evaluated by examining (1) the depositional and diagenetic history and reservoir properties of Travis Peak sandstones, (2) the presence and quality of source rocks for generating gas, (3) the burial and thermal history of source rocks and time of gas generation and migration relative to tectonic development of Travis Peak traps, (4) gas and water recoveries from drill-stem and formation tests, (5) the distribution of abnormal pressures based on shut-in-pressure data, and (6) the presence or absence of gas-water contacts associated with gas accumulations in Travis Peak sandstones. The Travis Peak Formation (and correlative Hosston Formation) is a basinward-thickening wedge of terrigenous clastic sedimentary rocks that underlies the northern Gulf Coast Basin from eastern Texas across northern Louisiana to southern Mississippi. Clastic influx was focused in two main fluvial-deltaic depocenters—one located in northeastern Texas and the other in southeastern Mississippi and northeastern Louisiana. Across the main hydrocarbon-productive trend in eastern Texas and northern Louisiana, the Travis Peak Formation is about 2,000 ft thick. Most Travis Peak hydrocarbon production in eastern Texas comes from drilling depths between 6,000 and 10,000 ft. Significant decrease in porosity and permeability occurs through that depth interval. Above 8,000-ft drilling depth in eastern Texas, Travis Peak sandstone matrix permeabilities often are significantly higher than the 0.1-millidarcy (mD) cutoff that characterizes tight-gas reservoirs. Below 8,000 ft, matrix permeability of Travis Peak sandstones is low because of pervasive quartz cementation, but abundant natural fractures impart significant fracture permeability. Although pressure data within the middle and lower Travis Peak Formation are limited in eastern Texas, overpressured reservoirs caused by thermal generation of gas, typical of basin-centered gas accumulations, are not common in the Travis Peak Formation. Significant overpressure was found in only one Travis Peak sandstone reservoir in 1 of 24 oil and gas fields examined across eastern Texas and northern Louisiana. The presence of gas-water contacts is perhaps the most definitive criterion indicating that a gas accumulation is conventional rather than a “sweet spot” within a basin-centered gas accumulation. Hydrocarbon-water contacts within Travis Peak sandstone reservoirs were documented in 17 fields and probably occur in considerably more fields across the productive Travis Peak trend in eastern Texas and northern Louisiana. All known hydrocarbon-water contacts in Travis Peak reservoirs in eastern Texas, however, occur within sandstones in the upper 500 ft of the formation. Although no gas-water contacts have been reported within the lower three-fourths of the Travis Peak Formation in northeastern Texas, gas production from that interval is limited. The best available data suggest that most middle and lower Travis Peak sandstones are water bearing in northeastern Texas. Insufficient hydrocarbon charge relative to permeability of Travis Peak reservoirs might be responsible for lack of overpressure and basin-centered gas within the Travis Peak Formation. Shales interbedded with Travis Peak sandstones in eastern Texas are primarily oxidized flood-plain deposits with insufficient organic-carbon content to be significant sources of oil and gas. The most likely source rocks for hydrocarbons in Travis Peak reservoirs are two stratigraphically lower units, the Jurassic-age Bossier Shale of the Cotton Valley Group, and laminated, lime mudstones of the Jurassic Smackover Formation. Hydrocarbon charge, therefore, might be sufficient for development of conventional gas accumulations, but it is insufficient for development of basin-centered gas as a result of the absence of proximal source rocks and a lack of effective migration pathways from stratigraphically or geographically distant source rocks.

Louisiana, Mississippi, Texas↗

USGS2021

A decision tool to identify population management strategies for common ravens and other avian predators

Some avian species have developed the capacity to leverage resource subsidies associated with human manipulated landscapes to increase population densities in habitats with naturally low carrying capacities. Elevated corvid densities and new territory establishment have led to an unsustainable increase in depredation pressure on sympatric native wildlife prey populations as well as in crop damage. Yet, subsidized predator removal programs aimed at reducing densities are likely most effective longer-term when conducted in tandem with subsidy control, habitat management, and robust assessment monitoring programs. We developed decision support software that leverages stage structured Lefkovitch population matrices to compare and identify treatment strategies that reduce subsidized avian predator densities most efficiently, in terms of limiting both cost and take levels. The StallPOPd (Version 4; available at https://doi.org/10.7298/sk2e-0c38.4) software enables managers to enter the area of their management stratum and the demographic properties (vital rates) of target bird population(s) of interest to evaluate strategies to decrease or curtail further population growth. Strategies explicitly include the reduction in fertility (i.e., eggs hatched) and/or the culling of hatchlings, non-breeders and/or breeders, but implicitly comprise reduction in survival or reproduction through subsidy denial. We illustrate the utilities of the software with examples using common ravens ( Corvus corax; ravens) in the Mojave Desert of California, USA. Unfortunately, the survival and reproduction effects of each unit of a particular subsidy in that system have remained elusive, though this is the priority of current research. Because the software leverages a life history representation that is known to characterize hundreds of wildlife species in addition to ravens, the work expands the suite of tools available to wildlife managers and agricultural industry specialists to abate bird damage and impacts on sensitive wildlife in habitats with persistent human subsidies.

Human-Wildlife Interactions↗

USGS2012

Genetic variation reveals influence of landscape connectivity on population dynamics and resiliency of western trout in disturbance-prone habitats

Salmonid fishes have evolved and persisted in dynamic ecosystems where disturbance events vary in frequency, magnitude, timing, and duration, as well as the specific nature of associated effects (e.g., changes in thermal or flow regimes, geomorphology, or water chemistry). In the western United States, one of the major drivers of disturbance in stream ecosystems is fire. Although there is a growing consensus that fish populations can ultimately benefit from the productive and heterogeneous habitats created by fire, to persist they obviously have to withstand the immediate and shorter-term effects of fire, which can reduce or even extirpate local populations. Movement among interconnected stream habitats is thought to be an important strategy enabling persistence during and following fire, and there is mounting concern that the extensive isolation of salmonid populations in fragmented habitats is reducing their resiliency to fire. In spite of this concern, there are few direct observations of salmonid responses to fire. In fact, guidance is based largely on a broader understanding of the influences of landscape structure and disturbance in general on salmonid fishes, and there is considerable uncertainty about how best to manage for salmonid resilience to wildfire. Studies are limited by the difficult logistics of following fish responses in the face of unpredictable events such as wildfires. Therefore, BACI (Before-After-Control-Impact) study designs are nearly impossible, and replication is similarly challenging because fires are often low-frequency events. Furthermore, conventional ecological study approaches (e.g., studies of fish distribution, abundance, life histories, and movement) are logistically difficult to implement. Overall, a major challenge to understanding resilience of salmonid populations in fire-prone environments is related to moving beyond localized case studies to those with broader applicability in wildfire management . Genetic data can be useful for overcoming many of the limitations inherent in ecological studies. Here we review several case studies of western trout where population genetic data have provided insight about fish responses to fragmentation and disturbance more generally, and specifically in relation to fire. Results of these studies confirm the importance of movement and landscape connectivity for ensuring fish persistence in fire-prone landscapes, and highlight the usefulness of genetic approaches for broad-scale evaluation and monitoring of population responses to fire and related management actions.

Technical Report↗

USGS2021

Intact landscape promotes gene flow and low genetic structuring in the threatened Eastern Massasauga Rattlesnake

Genetic structuring of wild populations is dependent on environmental, ecological, and life-history factors. The specific role environmental context plays in genetic structuring is important to conservation practitioners working with rare species across areas with varying degrees of fragmentation. We investigated fine-scale genetic patterns of the federally threatened Eastern Massasauga Rattlesnake ( Sistrurus catenatus ) on a relatively undisturbed island in northern Michigan, USA. This species often persists in habitat islands throughout much of its distribution due to extensive habitat loss and distance-limited dispersal. We found that the entire island population exhibited weak genetic structuring with spatially segregated variation in effective migration and genetic diversity. The low level of genetic structuring contrasts with previous studies in the southern part of the species’ range at comparable fine scales (~7 km), in which much higher levels of structuring were documented. The island population's genetic structuring more closely resembles that of populations from Ontario, Canada, that occupy similarly intact habitats. Intrapopulation variation in effective migration and genetic diversity likely corresponds to the presence of large inland lakes acting as barriers and more human activity in the southern portion of the island. The observed genetic structuring in this intact landscape suggests that the Eastern Massasauga is capable of sufficient interpatch movements to reduce overall genetic structuring and colonize new habitats. Landscape mosaics with multiple habitat patches and localized barriers (e.g., large water bodies or roads) will promote gene flow and natural colonization for this declining species.

Michigan↗

USGS2014

Coastal bathymetry and backscatter data collected in 2012 from the Chandeleur Islands, Louisiana

As part of the Barrier Island Evolution Research Project, scientists from the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center conducted nearshore geophysical surveys off the northern Chandeleur Islands, Louisiana, in July and August of 2012. The objective of the study is to better understand barrier island geomorphic evolution, particularly storm-related depositional and erosional processes that shape the islands over annual to interannual timescales (1-5 years). Collecting geophysical data will allow us to identify relationships between the geologic history of the island and its present day morphology and sediment distribution. This mapping effort was the second in a series of three planned surveys in this area. High resolution geophysical data collected in each of 3 consecutive years along this rapidly changing barrier island system will provide a unique time-series dataset that will significantly further the analyses and geomorphological interpretations of this and other coastal systems, improving our understanding of coastal response and evolution over short time scales (1-5 years). This Data Series report includes the geophysical data that were collected during two cruises ( USGS Field Activity Numbers 12BIM03 and 12BIM04 ) aboard the RV Survey Cat and the RV Twin Vee along the northern portion of the Chandeleur Islands, Breton National Wildlife Refuge, Louisiana. Data were acquired with the following equipment: a Systems Engineering and Assessment, Ltd., SWATHplus interferometric sonar (468 kilohertz (kHz)), an EdgeTech 424 (4-24 kHz) chirp sub-bottom profiling system, and a Knudsen 320BP (210 kHz) echosounder. This report serves as an archive of processed interferometric swath and single-beam bathymetry data. Geographic information system data products include an interpolated digital elevation model, an acoustic backscatter mosaic, trackline maps, and point data files. Additional files include error analysis maps, Field Activity Collection System logs, and formal Federal Geographic Data Committee metadata. NOTE: These data are scientific in nature and are not to be used for navigation.

Louisiana↗