Geology Reports⌕ Search

SEARCH · Geology Reports

Results for “Ecology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,351 records · Page 75Linked to original sources
USGS2013

Ecological correlates of variable organ sizes and fat loads in the most northerly-wintering shorebirds

Shorebirds at northern latitudes during the nonbreeding season typically carry relatively large lipid stores and exhibit an up-regulation of lean tissues associated with digestion and thermogenesis. Intraspecific variation in these tissues across sites primarily reflects differences in environmental conditions. Rock (Calidris ptilocnemis (Coues, 1873)) and Purple (Calidris maritima (Brünnich, 1764)) sandpipers are closely related species having the most northerly nonbreeding distributions among shorebirds, living at latitudes up to 61°N in Cook Inlet, Alaska, and up to 71°N in northern Norway, respectively. Cook Inlet is the coldest known site used by nonbreeding shorebirds, and the region’s mudflats annually experience extensive coverage of foraging sites by sea and shore-fast ice. Accordingly, Rock Sandpipers increase their fat stores to nearly 20% of body mass during winter. In contrast, Purple Sandpipers exploit predictably ice-free rocky intertidal foraging sites and maintain low (<6.5%) fat stores. Rock Sandpipers increase the mass of lean tissues from fall to winter, including contour feathers, stomach, and liver components. They also have greater lean pectoralis and supracoracoideus muscle and liver and kidney tissues compared with Purple Sandpipers in winter. This demonstrates a combined emphasis on digestive processes and thermogenesis, whereas Purple Sandpipers primarily augment organs associated with digestive processes. The high winter fat loads and increased lean tissues of Rock Sandpipers in Cook Inlet reflect the region’s persistent cold and abundant but sporadically unavailable food resources.

Alaska↗
USGS2005

Ecology of the Lake Huron fish community, 1970-1999

We review the status of the Lake Huron fish community between 1970 and 1999 and explore the effects of key stressors. Offshore waters changed little in terms of nutrient enrichment, while phosphorus levels declined in inner Saginaw Bay. Introduced mussels ( Dreissena spp.) proliferated and may have caused a decline in Diporeia spp. This introduction could have caused a decline in lake whitefish ( Coregonus clupeaformis ) growth and condition, with serious repercussions for commercial fisheries. Bythotrephes , an exotic predatory cladoceran, and other new exotics may be influencing the fish community. Sea lampreys ( Petromyzon marinus ) remained prevalent, but intensive control efforts on the St. Mary's River may reduce their predation on salmonines. Overfishing was less of a problem than in the past, although fishing continued to reduce the amount of lake trout ( Salvelinus namaycush ) spawning biomass resulting from hatchery-reared fish planted to rehabilitate this species. Massive stocking programs have increased the abundance of top predators, but lake trout were rehabilitated in only one area. Successful lake trout rehabilitation may require lower densities of introduced pelagic prey fish than were seen in the 1990s, along with continued stocking of hatchery-reared lake trout and control of sea lamprey. Such reductions in prey fish could limit Pacific salmon ( Oncorhynchus spp.) fisheries.

Canadian Journal of Fisheries and Aquatic Sciences↗
USGS1972

Factors of ecologic succession in oligotrophic fish communities of the Laurentian Great Lakes

Oligotrophic fish communities of the Great Lakes have undergone successive disruptions since the mid-1800s. Major contributing factors have been intensive selective fisheries, extreme modification of the drainage, invasion of marine species, and progressive physical&ndash;chemical changes of the lake environments. Lake Ontario was the first to be affected as its basin was settled and industrialized earliest, and it was the first to be connected by canals to the mid-Atlantic where the alewife ( Alosa pseudoharengus ) and sea lamprey ( Petromyzon marinus ) which ultimately became established in the Great Lakes were abundant. Oligotrophic fish communities were successively disrupted in Lakes Erie, Huron, Michigan, and Superior as the affects of population growth, industrialization, and marine invaders spread upward in the Laurentian drainage.The degree and sequence of response of families offish and species within families differed for each factor, but the sequence of change among families and species has been the same in response to each factor as it affected various lakes at different times. The ultimate result of the disruption of fish communities has been a reduction of productivity of oligotrophic species that ranges from extreme in Lake Ontario to moderate in Lake Superior, and which has reached a state of instability and rapid change in the upper three Great Lakes by the rnid-1900s similar to the situation in Lake Ontario in the mid-1800s. Since oligotrophic species (primarily salmonines, coregonines, and deepwater cottids) are the only kinds of fish that fully occupied the entire volume of the deepwater Great Lakes (Ontario, Huron, Michigan, and Superior), the fish biomass of these lakes has been reduced as various species declined or disappeared. In Lake Erie, which is shallow, and in the shallow bays of the deep lakes, oligotrophic species were replaced by mesotrophic species, primarily percids, which have successively increased and declined. All oligotrophic species are greatly reduced or extinct in lakes Ontario and Erie, and are in various stages of decline in lakes Huron, Michigan, and Superior, from greatest to least, respectively. The percids appear to be near the end of their sequence of succession in lakes Erie, Ontario, and Huron (primarily Saginaw Bay) where only the yellow perch ( Perca flavescens ) remains abundant. The yellow perch appears to be on the brink of decline in Lake Erie, which has been more severely influenced by water quality change than the other lakes.

Journal of the Fisheries Research Board of Canada↗
USGS2000

Trophic ecology of largemouth bass and northern pike in allopatric and sympatric assemblages in northern boreal lakes

Largemouth bass ( Micropterus salmoides ) and northern pike ( Esox lucius ) are top predators in the food chain in most aquatic environments that they occupy; however, limited information exists on species interactions in the northern reaches of largemouth bass distribution. We investigated the seasonal food habits of allopatric and sympatric assemblages of largemouth bass and northern pike in six interior lakes within Voyageurs National Park, Minnesota. Percentages of empty stomachs were variable for largemouth bass (38-54%) and northern pike (34.7-66.7%). Fishes (mainly yellow perch, Perca flavescens ) comprised greater than 60% (mean percent mass, MPM) of the northern pike diet during all seasons in both allopatric and sympatric assemblages. Aquatic insects (primarily Odonata and Hemiptera) were important in the diets of largemouth bass in all communities (0.0-79.7 MPM). Although largemouth bass were observed in the diet of northern pike, largemouth bass apparently did not prey on northern pike. Seasonal differences were observed in the proportion of aquatic insects ( P = 0.010) and fishes ( P = 0.023) in the diets of northern pike and largemouth bass. Based on three food categories, jackknifed classifications correctly classified 77 and 92% of northern pike and largemouth bass values, respectively. Percent resource overlap values were biologically significant (greater than 60%) during at least one season in each sympatric assemblage, suggesting some diet overlap.

Minnesota↗
USGS2000

Ecological correlates of mate fidelity in two Arctic-breeding sandpipers

Monogamous birds exhibit considerable interspecific variation in rates of mate fidelity between years, but the reasons for this variation are still poorly understood. In a 4-year study carried out in western Alaska, mate-fidelity rates in Semipalmated Sandpipers ( Calidris pusilla ; mate fidelity was 47% among pairs where at least one mate returned and 94% among pairs where both mates returned) were substantially higher than in Western Sandpipers ( Calidris mauri ; 25 and 67%, respectively), despite the similar breeding biology of these sibling species. Divorce was not a response to nesting failure in Western Sandpipers, and mate change had no effect on the reproductive performance of either species. Nor were mate-fidelity rates related to differential rates of breeding dispersal, because the species did not differ in site fidelity. Reunited pairs and males that changed mates showed strong site tenacity, while females that changed mates moved farther. Differences in local survival rates or habitat are also unlikely to explain mate fidelity, since the two species did not differ in local survival rates, ϕ (Western Sandpipers: ϕ –hat = 0.57 ± 0.05 (mean ± SE), Semipalmated Sandpipers: ϕ –hat = 0.66 ± 0.06), and they bred in the same area, sometimes using the same nest cups. Although we were able to reject the above explanations, it was not possible to determine whether mate retention was lower in Western Sandpipers than in Semipalmated Sandpipers because of interspecific differences in mating tactics, time constraints imposed by migration distance, or a combination of these factors. Western Sandpipers exhibited greater sexual size dimorphism, but also migrated for shorter distances and tended to nest earlier and more asynchronously than Semipalmated Sandpipers. Finally, we show that conventional methods underestimate divorce rates, and interspecific comparisons may be biased if breeding-dispersal and recapture rates are not considered.

Alaska↗
USGS1985

Nutritional ecology of a fossorial herbivore: protein N and energy value of winter caches made by the northern pocket gopher, Thomomys talpoides

Northern pocket gophers ( Thomomys talpoides ) are fossorial herbivores that excavate belowground plant parts for food. In subalpine areas during autumn and winter, pocket gophers hoard plant parts in caches placed in or under snow. We examined the size and composition of 17 nival caches and tested the hypotheses that (i) cached food can provide complete energy and protein N sustenance during typical periods when burrowing is precluded by soil conditions, and (ii) cached food is a random sample of items encountered by burrowing gophers during tunnel excavation. Our data indicate that caches provide substantially more energy than protein in terms of a pocket gopher's daily maintenance requirements. Nevertheless, quantities stored are sufficient to allow individuals to endure commonly encountered adverse environmental conditions without entering negative energy or protein balance. Analysis of stomach contents and a comparison of cache composition to availability of plant species suggests that gophers consume high-protein items as they are encountered, and store low-protein items in caches.

Canadian Journal of Zoology↗
USGS2014

Efficient 3D movement-based kernel density estimator and application to wildlife ecology

We describe an efficient implementation of a 3D movement-based kernel density estimator for determining animal space use from discrete GPS measurements. This new method provides more accurate results, particularly for species that make large excursions in the vertical dimension. The downside of this approach is that it is much more computationally expensive than simpler, lower-dimensional models. Through a combination of code restructuring, parallelization and performance optimization, we were able to reduce the time to solution by up to a factor of 1000x, thereby greatly improving the applicability of the method.

Conference Paper↗
USGS2015

Building a multi-scaled geospatial temporal ecology database from disparate data sources: Fostering open science through data reuse

Although there are considerable site-based data for individual or groups of ecosystems, these datasets are widely scattered, have different data formats and conventions, and often have limited accessibility. At the broader scale, national datasets exist for a large number of geospatial features of land, water, and air that are needed to fully understand variation among these ecosystems. However, such datasets originate from different sources and have different spatial and temporal resolutions. By taking an open-science perspective and by combining site-based ecosystem datasets and national geospatial datasets, science gains the ability to ask important research questions related to grand environmental challenges that operate at broad scales. Documentation of such complicated database integration efforts, through peer-reviewed papers, is recommended to foster reproducibility and future use of the integrated database. Here, we describe the major steps, challenges, and considerations in building an integrated database of lake ecosystems, called LAGOS (LAke multi-scaled GeOSpatial and temporal database), that was developed at the sub-continental study extent of 17 US states (1,800,000 km 2 ). LAGOS includes two modules: LAGOS GEO , with geospatial data on every lake with surface area larger than 4 ha in the study extent (~50,000 lakes), including climate, atmospheric deposition, land use/cover, hydrology, geology, and topography measured across a range of spatial and temporal extents; and LAGOS LIMNO , with lake water quality data compiled from ~100 individual datasets for a subset of lakes in the study extent (~10,000 lakes). Procedures for the integration of datasets included: creating a flexible database design; authoring and integrating metadata; documenting data provenance; quantifying spatial measures of geographic data; quality-controlling integrated and derived data; and extensively documenting the database. Our procedures make a large, complex, and integrated database reproducible and extensible, allowing users to ask new research questions with the existing database or through the addition of new data. The largest challenge of this task was the heterogeneity of the data, formats, and metadata. Many steps of data integration need manual input from experts in diverse fields, requiring close collaboration.

Connecticut, Delaware, Illinois, Indiana, Iowa, Ma↗
USGS2012

Effects of spatial subsidies and habitat structure on the foraging ecology and size of geckos

While it is well established that ecosystem subsidies—the addition of energy, nutrients, or materials across ecosystem boundaries—can affect consumer abundance, there is less information available on how subsidy levels may affect consumer diet, body condition, trophic position, and resource partitioning among consumer species. There is also little information on whether changes in vegetation structure commonly associated with spatial variation in subsidies may play an important role in driving consumer responses to subsidies. To address these knowledge gaps, we studied changes in abundance, diet, trophic position, size, and body condition of two congeneric gecko species ( Lepidodactylus spp.) that coexist in palm dominated and native (hereafter dicot dominated) forests across the Central Pacific. These forests differ trongly both in the amount of marine subsidies that they receive from seabird guano and carcasses, and in the physical structure of the habitat. Contrary to other studies, we found that subsidy level had no impact on the abundance of either gecko species; it also did not have any apparent effects on resource partitioning between species. However, it did affect body size, dietary composition, and trophic position of both species. Geckos in subsidized, dicot forests were larger, had higher body condition and more diverse diets, and occupied a much higher trophic position than geckos found in palm dominated, low subsidy level forests. Both direct variation in subsidy levels and associated changes in habitat structure appear to play a role in driving these responses. These results suggest that variation in subsidy levels may drive important behavioral responses in predators, even when their numerical response is limited. Strong changes in trophic position of consumers also suggest that subsidies may drive increasingly complex food webs, with longer overall food chain length.

Palmyra Atoll↗
USGS2025

Potential impacts of 2.3.4.4b highly pathogenic H5N1 avian influenza virus infection on Snow Goose (Anser caerulescens) movement ecology

While wild waterfowl are known reservoirs of avian influenza viruses and facilitate the movement of these viruses, there are notable differences in the response to infection across species. This study explored differential responses to infection with highly pathogenic avian influenza in Snow Geese ( Anser caerulescens ) located in the California Central Valley. Though H5 antibody prevalence was high across years among birds sampled in the winter (75% in both years via hemagglutination inhibition), these values were even higher among birds sampled in summer that failed to migrate (i.e., August 2023 = 100% and August 2024 = 93% via hemagglutination inhibition). Birds that failed to migrate were also generally lighter than birds sampled in the winter and presented notable damage to cerebrum and cerebellum. In December 2022, a single individual positive for infection with H5N1 at the time of sampling indicated reduced movement during the 14 days following sampling but completed spring migration comparably with uninfected conspecifics. However, while no birds were actively infected during sampling and marking in 2023, two marked geese departed for migration late and one did not migrate at all. Additional banded birds marked in August have been reencountered in scenarios ranging from hunter harvest at a different site over a year later to found dead shortly after banding. Our data indicate that Snow Geese infected with HPAI have the potential to express variable outcomes following infection with highly pathogenic H5N1, ranging from rapid recovery within a migratory season to death. These data also suggest that the abnormal failure of some Snow Geese to migrate from the Central Valley is likely driven by HPAI infection.

California↗
USGS2013

Coping with the cold: An ecological context for the abundance and distribution of rock sandpipers during winter in upper Cook Inlet, Alaska

Shorebirds are conspicuous and abundant at high northern latitudes during spring and summer, but as seasonal conditions deteriorate, few remain during winter. To the best of our knowledge, Cook Inlet, Alaska (60.6˚ N, 151.6˚ W), is the world’s coldest site that regularly supports wintering populations of shorebirds, and it is also the most northerly nonbreeding location for shorebirds in the Pacific Basin. During the winters of 1997–2012, we conducted aerial surveys of upper Cook Inlet to document the spatial and temporal distribution and number of Rock Sandpipers (Calidris ptilocnemis) using the inlet. The average survey total was 8191 ± 6143 SD birds, and the average of each winter season’s highest single-day count was 13 603 ± 4948 SD birds. We detected only Rock Sandpipers during our surveys, essentially all of which were individuals of the nominate subspecies (C. p. ptilocnemis). Survey totals in some winters closely matched the population estimate for this subspecies, demonstrating the region’s importance as a nonbreeding resource to the subspecies. Birds were most often found at only a handful of sites in upper Cook Inlet, but shifted their distribution to more southerly locations in the inlet during periods of extreme cold. Two environmental factors allow Rock Sandpipers to inhabit Cook Inlet during winter: 1) an abundant bivalve (Macoma balthica) food source and 2) current and tidal dynamics that keep foraging substrates accessible during all but extreme periods of cold and ice accretion. C. p. ptilocnemis is a subspecies of high conservation concern for which annual winter surveys may serve as a relatively inexpensive population-monitoring tool that will also provide insight into adaptations that allow these birds to exploit high-latitude environments in winter.

Alaska↗
USGS2010

Wolves will not provide small-scale ecological restoration

Licht and colleagues (BioScience 60: 147–153) proposed a paradigm shift in wolf management to include the introductions of small, highly manipulated groups of wolves ( Canis lupus ) to confined natural areas to facilitate ecosystem recovery. Certainly, reductions or losses of apex predators from many regions worldwide have had profound effects on ecosystem characteristics (Soulé et al. 2003). Numerous efforts to restore or enhance predator populations through policy change or reintroductions have occurred, often with the intent to restore ecosystem function (Breitenmoser et al. 2001). However, in addition to the gargantuan technological and political challenges inherent in Licht and colleagues' proposal, we contend that intensively managed wolves will not restore natural ecosystem processes given the disparity in scale between these proposed actions and the ecosystem processes that wolves foster. Further, we note that predator-prey relationships are more complex than Licht suggested.

BioScience↗
USGS2010

Isotopic characterization of flight feathers in two pelagic seabirds: Sampling strategies for ecological studies

We wish to use stable-isotope analysis of flight feathers to understand the feeding behavior of pelagic seabirds, such as the Hawaiian Petrel ( Pterodroma sandwichensis ) and Newell&rsquo;s Shearwater ( Puffinus auricularis newelli ). Analysis of remiges is particularly informative because the sequence and timing of remex molt are often known. The initial step, reported here, is to obtain accurate isotope values from whole remiges by means of a minimally invasive protocol appropriate for live birds or museum specimens. The high variability observed in D 13 C and D 15 N values within a feather precludes the use of a small section of vane. We found the average range within 42 Hawaiian Petrel remiges to be 1.3&permil; for both D 13 C and D 15 N and that within 10 Newell&rsquo;s Shearwater remiges to be 1.3&permil; and 0.7&permil; for D 13 C and D 15 N, respectively. The D 13 C of all 52 feathers increased from tip to base, and the majority of Hawaiian Petrel feathers showed an analogous trend in D 15 N. Although the average range of DD in 21 Hawaiian Petrel remiges was 11&permil;, we found no longitudinal trend. We discuss influences of trophic level, foraging location, metabolism, and pigmentation on isotope values and compare three methods of obtaining isotope averages of whole feathers. Our novel barb-sampling protocol requires only 1.0 mg of feather and minimal preparation time. Because it leaves the feather nearly intact, this protocol will likely facilitate obtaining isotope values from remiges of live birds and museum specimens. As a consequence, it will help expand the understanding of historical trends in foraging behavior

Hawaii↗
USGS2025

Combining ecological and genomic diversity surveys to inform conservation and restoration of an endangered wetland plant, soft salty bird’s-beak (Chloropyron molle ssp. molle)

Emergent tidal wetlands are declining globally as a result of sea level rise and land use change. This habitat loss can keenly affect rare plant species within wetlands, and may require restoration to meet species recovery goals related to retaining populations throughout species' ranges. Soft salty bird’s-beak ( Chloropyron molle ssp. molle ) is a federally- and state-endangered hemi-parasitic plant that occurs at the upper marsh transition zone in the San Francisco Bay–Delta, California, USA. We combined field surveys to document habitat associations and trends in abundance with genomic surveys to understand patterns of genetic structure in this rare endemic. We found that C . molle ssp. molle persisted at nine previously occupied marsh sites, although four sites (Hill Slough, MOTCO East, Fagan Marsh, and Joice Island) were smaller in population size than when surveyed in the 1990s. Additionally, twelve sites contained plots with suitable but unoccupied habitat that could be further assessed for restoration. Genomic analysis of over 40,000 single-nucleotide polymorphisms (SNPs) and 253 individuals grouped C . molle ssp. molle into six to seven regional genetic clusters with isolation by distance, and confirmed that C . molle ssp. molle is genetically distinct from adjacent populations of its closest relative ( C . molle ssp. hispidum ). The western-most C . molle ssp. molle sites of Point Pinole and Fagan Marsh were the most genetically and geographically isolated and had the lowest genome-wide diversity. Heterozygosity in sets of genes associated with tidal elevation, salinity, and annual and summer precipitation varied independently across populations. Overall, these genomic patterns indicate that selecting donor sites with similar environmental conditions and utilizing composite seeding approaches from multiple sites could allow for local adaptation to a range of possible environmental conditions. This comprehensive survey of habitat and genomic patterns can allow for the development of restoration actions and build climate-adaptation planning to help prevent the loss of a rare plant.

California↗
USGS1997

Habitat use and feeding ecology of riverine juvenile American shad

We examined premigratory populations of American shad Alosa sapidissima in the upper Delaware River to determine habitat and microhabitat use, differential prey use among habitat types, and habitat suitability indices for this previously unmodeled life stage. Both seining and diving techniques were used to quantify juveniles in six habitat types with six physical habitat covariables. Plankton and drift samples also were compared with stomach contents within habitats. We found no relation between relative abundance of juveniles and habitat type, which suggests general use of most riverine habitats. Physical habitat variables likewise did not affect use of habitat within ranges recorded, with two exceptions: (1) a positive relationship between abundance and water temperature in riffles and (2) a positive relationship between abundance and percent submerged aquatic vegetation (SAV) cover in SAV habitats. Opportunistic use of prey items was apparent; however, juveniles selected chironomid larvae and pupae and adult terrestrial insects and avoided ephemeropterans. Overlap between diets and available prey was high for most habitat types ( C λ mean = 0.71), especially for riffles ( C λ = 0.91). However, overlap for juveniles foraging at tributary mouths, where they strongly selected adult terrestrial insects, was low ( C λ = 0.49).

Pennsylvania↗