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Effects of Impoundments and Land-Cover Changes on Streamflows and Selected Fish Habitat in the Upper Osage River Basin, Missouri and Kansas

A study was conducted by the U.S. Geological Survey in cooperation with the Missouri Department of Conservation to estimate the effects of existing and proposed impoundments, land-cover changes, and reported water uses on streamflows in the 5,410-square mile upper Osage River Basin. The hydrologic model Hydrologic Simulation Program-FORTRAN (HSPF) was calibrated and validated to current (1995?2004 water years) regulation and water-use conditions, and scenarios were developed to evaluate differences for the same 10-years of record under pre-settlement, and proposed impoundment conditions. Analyses included quantification of changes in the magnitude, frequency, timing, and duration of streamflows under each simulation scenario. Streamflows from the simulations were used in conjunction with known streamflow-fish habitat relations to quantify effects of altered flows on fish-habitat area at selected Marais des Cygnes and Marmaton River locations. The cumulative effects of impoundments and land-cover changes were determined to substantially alter streamflows in the upper Osage River Basin model simulations spanning pre-settlement to proposed future conditions. The degree of streamflow alteration varied between major subbasins. Streamflows in the Marais des Cygnes River Basin were altered between pre-settlement and current conditions, primarily by major impoundments, with smaller changes expected with proposed regulation. Streamflows in the Little Osage River Basin were relatively unchanged between pre-settlement and current conditions with land-cover changes (primarily the conversion of native prairies to cultivated land) affecting flows more than the few current impoundments in this basin. The current peak flows in the Marmaton River Basin generally were higher than pre-settlement or proposed scenario peak flows. Of the three major subbasins, the Marmaton River Basin is likely to be the most affected by proposed impoundments. Declines in monthly minimum streamflows under a proposed impoundment scenario at the Marais des Cygnes River near the Kansas-Missouri state line, Kansas, were greatest for the lowest 10 percent of corresponding observed flows and during the driest years (2000, 2001 water years); that is, the greatest percent declines in flows under proposed conditions generally occurred during the lowest current/observed flow periods. In a small headwater basin in the Marmaton River Basin, simulated declines in minimum flows were small (generally less than 6 cubic feet per second and less than 1 cubic foot per second for 1- and 3-day scenarios), but resulted in 10 to 18 additional zero flow days for the 10-year simulation for the proposed scenarios relative to current simulated conditions. Reductions in minimum monthly flows as a result of additional impoundments generally were less than 5 cubic feet per second at the Marmaton River near Marmaton, Kansas, and resulted in 6 additional zero flow days. The greatest declines between proposed and current flows at the Marmaton River near the Kansas-Missouri state line, Missouri, generally occurred in the lower 50 percentile of the distribution of current simulated flows and during the drier simulation years (2001?2003). Proposed conditions resulted in declines in the 0-10 percentile flow values for the 1-, 3-, and 7-day durations. July, August, and October had the largest declines in proposed low flows relative to current simulated low flows for the 10-year simulation at this site. The flood frequency for the Marais des Cygnes River near the Kansas-Missouri state line was unchanged between observed and proposed conditions for the 10-year simulation, but was 450 percent greater under the pre-settlement scenarios compared to observed conditions. Flood frequency generally was greatest for the current condition scenarios in the Marmaton River Basin and least for the proposed conditions, although the effects of regulation on flood frequency decreased downstream from the Kansas-

Scientific Investigations Report↗

Simulated Effects of Year 2030 Water-Use and Land-Use Changes on Streamflow near the Interstate-495 Corridor, Assabet and Upper Charles River Basins, Eastern Massachusetts

Continued population growth and land development for commercial, industrial, and residential uses have created concerns regarding the future supply of potable water and the quantity of ground water discharging to streams in the area of Interstate 495 in eastern Massachusetts. Two ground-water models developed in 2002-2004 for the Assabet and Upper Charles River Basins were used to simulate water supply and land-use scenarios relevant for the entire Interstate-495 corridor. Future population growth, water demands, and commercial and residential growth were projected for year 2030 by the Metropolitan Area Planning Council. To assess the effects of future development on subbasin streamflows, seven scenarios were simulated by using existing computer-based ground-water-flow models with the data projected for year 2030. The scenarios incorporate three categories of projected 2030 water- and land-use data: (1) 2030 water use, (2) 2030 land use, and (3) a combination of 2030 water use and 2030 land use. Hydrologic, land-use, and water-use data from 1997 through 2001 for the Assabet River Basin study and 1989 through 1998 for the Upper Charles River Basin study were used to represent current conditions - referred to as 'basecase' conditions - in each basin to which each 2030 scenario was compared. The effects of projected 2030 land- and water-use change on streamflows in the Assabet River Basin depended upon the time of year, the hydrologic position of the subbasin in the larger basin, and the relative areas of new commercial and residential development projected for a subbasin. Effects of water use and land use on streamflow were evaluated by comparing average monthly nonstorm streamflow (base flow) for March and September simulated by using the models. The greatest decreases in streamflow (up to 76 percent in one subbasin), compared to the basecase, occurred in September, when streamflows are naturally at their lowest level. By contrast, simulated March streamflows decreased less than 6.5 percent from basecase streamflows in all subbasins for all scenarios. The simulations showed similar effects in the Upper Charles River Basin, but increased water use contributed to decreased simulated streamflow in most subbasins. Simulated changes in March streamflows for 2030 in the Upper Charles River Basin were within +- 6 percent of the basecase for all scenarios and subbasins. Percentage decreases in simulated September streamflows for 2030 were greater than in March but less than the September decreases that resulted for some subbasins in the Assabet River Basin. Only two subbasins of the Upper Charles River Basin had projected decreases greater than 5 percent. In the Mill River subbasin, the decrease was 11 percent, and in the Mine Brook subbasin, 6.6 percent. Changes in water use and wastewater return flow generally were found to have the greatest effect in the summer months when streamflow and aquifer recharge rates are low and water use is high. September increases in main-stem streamflow of both basins were due mainly to increased discharge of treated effluent from wastewater-treatment facilities on the main-stem rivers. In the Assabet River Basin, wastewater-treatment-facility discharge became a smaller proportion of total streamflow with distance downstream. In contrast, wastewater-treatment facility discharge in the Upper Charles River Basin became a greater proportion of streamflow with distance downstream. The effects of sewer-line extension and low-impact development on streamflows in two different subbasins of the Assabet River Basin also were simulated. The result of extending sewer lines with a corresponding decrease in septic-system return flow caused September streamflows to decrease as much as 15 percent in the Fort Pond Brook subbasin. The effect of low-impact development was simulated in the Hop Brook subbasin in areas projected for commercial development. In this simulation, the greater the area where low-i

Scientific Investigations Report↗

Geomorphic segmentation, hydraulic geometry, and hydraulic microhabitats of the Niobrara River, Nebraska — Methods and initial results

The Niobrara River of Nebraska is a geologically, ecologically, and economically significant resource. The State of Nebraska has recognized the need to better manage the surface- and ground-water resources of the Niobrara River so they are sustainable in the long term. In cooperation with the Nebraska Game and Parks Commission, the U.S. Geological Survey is investigating the hydrogeomorphic settings and hydraulic geometry of the Niobrara River to assist in characterizing the types of broad-scale physical habitat attributes that may be of importance to the ecological resources of the river system. This report includes an inventory of surface-water and ground-water hydrology data, surface water-quality data, a longitudinal geomorphic segmentation and characterization of the main channel and its valley, and hydraulic geometry relations for the 330-mile section of the Niobrara River from Dunlap Diversion Dam in western Nebraska to the Missouri River confluence. Hydraulic microhabitats also were analyzed using available data from discharge measurements to demonstrate the potential application of these data and analysis methods. The main channel of the Niobrara was partitioned into three distinct fluvial geomorphic provinces: an upper province characterized by open valleys and a sinuous, equiwidth channel; a central province characterized by mixed valley and channel settings, including several entrenched canyon reaches; and a lower province where the valley is wide, yet restricted, but the river also is wide and persistently braided. Within the three fluvial geomorphic provinces, 36 geomorphic segments were identified using a customized, process-orientated classification scheme, which described the basic physical characteristics of the Niobrara River and its valley. Analysis of the longitudinal slope characteristics indicated that the Niobrara River longitudinal profile may be largely bedrock-controlled, with slope inflections co-located at changes in bedrock type at river level. Hydraulic geometry relations indicated that local (at-a-station) channel adjustments of the Niobrara River to changing discharge are accommodated mainly by changes in velocity, and streamwise adjustments are accommodated through changes in channel width. Downstream hydraulic geometry relations are in general agreement with values previously published for rivers of the Great Plains, but coefficients are likely skewed low because the locations of the streamflow-gaging stations used in this analysis are located at natural or engineered constrictions and may not be accurately representing downstream adjustment processes of the Niobrara River. A demonstration analysis of hydraulic microhabitat attributes at a single station indicated that changes in velocity-related habitat types is the primary microhabitat adjustment over a range of discharges, but the magnitude of that adjustment for any particular discharge is temporally variable.

Nebraska↗

Simulation of the Regional Ground-Water-Flow System and Ground-Water/Surface-Water Interaction in the Rock River Basin, Wisconsin

A regional, two-dimensional, areal ground-water-flow model was developed to simulate the ground-water-flow system and ground-water/surface-water interaction in the Rock River Basin. The model was developed by the U.S. Geological Survey (USGS), in cooperation with the Rock River Coalition. The objectives of the regional model were to improve understanding of the ground-water-flow system and to develop a tool suitable for evaluating the effects of potential regional water-management programs. The computer code GFLOW was used because of the ease with which the model can simulate ground-water/surface-water interactions, provide a framework for simulating regional ground-water-flow systems, and be refined in a stepwise fashion to incorporate new data and simulate ground-water-flow patterns at multiple scales. The ground-water-flow model described in this report simulates the major hydrogeologic features of the modeled area, including bedrock and surficial aquifers, ground-water/surface-water interactions, and ground-water withdrawals from high-capacity wells. The steady-state model treats the ground-water-flow system as a single layer with hydraulic conductivity and base elevation zones that reflect the distribution of lithologic groups above the Precambrian bedrock and a regionally significant confining unit, the Maquoketa Formation. In the eastern part of the Basin where the shale-rich Maquoketa Formation is present, deep ground-water flow in the sandstone aquifer below the Maquoketa Formation was not simulated directly, but flow into this aquifer was incorporated into the GFLOW model from previous work in southeastern Wisconsin. Recharge was constrained primarily by stream base-flow estimates and was applied uniformly within zones guided by regional infiltration estimates for soils. The model includes average ground-water withdrawals from 1997 to 2006 for municipal wells and from 1997 to 2005 for high-capacity irrigation, industrial, and commercial wells. In addition, the model routes tributary base flow through the river network to the Rock River. The parameter-estimation code PEST was linked to the GFLOW model to select the combination of parameter values best able to match more than 8,000 water-level measurements and base-flow estimates at 9 streamgages. Results from the calibrated GFLOW model show simulated (1) ground-water-flow directions, (2) ground-water/surface-water interactions, as depicted in a map of gaining and losing river and lake sections, (3) ground-water contributing areas for selected tributary rivers, and (4) areas of relatively local ground water captured by rivers. Ground-water flow patterns are controlled primarily by river geometries, with most river sections gaining water from the ground-water-flow system; losing sections are most common on the downgradient shore of lakes and reservoirs or near major pumping centers. Ground-water contributing areas to tributary rivers generally coincide with surface watersheds; however the locations of ground-water divides are controlled by the water table, whereas surface-water divides are controlled by surface topography. Finally, areas of relatively local ground water captured by rivers generally extend upgradient from rivers but are modified by the regional flow pattern, such that these areas tend to shift toward regional ground-water divides for relatively small rivers. It is important to recognize the limitations of this regional-scale model. Heterogeneities in subsurface properties and in recharge rates are considered only at a very broad scale (miles to tens of miles). No account is taken of vertical variations in properties or pumping rates, and no provision is made to account for stacked ground-water-flow systems that have different flow patterns at different depths. Small-scale flow systems (hundreds to thousands of feet) associated with minor water bodies are not considered; as a result, the model is not currently designed for simulating site-specifi

Scientific Investigations Report↗

Surface-Water and Groundwater Interactions along the Withlacoochee River, West-Central Florida

A study of the Withlacoochee River watershed in west-central Florida was conducted from October 2003 to March 2007 to gain a better understanding of the hydrology and surface-water and groundwater interactions along the river. The Withlacoochee River originates in the Green Swamp area in north-central Polk County and flows northerly through seven counties, emptying into the Gulf of Mexico. This study includes only the part of the watershed located between the headwaters in the Green Swamp and the U.S. Geological Survey gaging station near Holder, Florida. The Withlacoochee River within the study area is about 108 miles long and drains about 1,820 square miles. The Withlacoochee River watershed is underlain by thick sequences of carbonate rock that are covered by thin surficial deposits of unconsolidated sand and sandy clay. The clay layer is breached in many places because of the karst nature of the underlying limestone, and the degree of confinement between the Upper Florida aquifer and the surficial aquifer is highly variable throughout the watershed. The potential for movement of water from the surface or shallow deposits to deeper deposits, or from deeper deposits to the shallow deposits, exists throughout the Withlacoochee River watershed. Water levels were higher in deeper Upper Floridan aquifer wells than in shallow Upper Floridan aquifer wells or surficial aquifer wells at 11 of 19 paired or nested well sites, indicating potential for discharge to the surface-water system. Water levels were higher in shallow Upper Floridan aquifer or surficial aquifer wells than in deeper Upper Floridan aquifer wells at five other sites, indicating potential for recharge to the deeper Upper Floridan aquifer. Water levels in the surficial aquifer and Upper Floridan aquifer wells at the remaining three sites were virtually the same, indicating little or no confinement at the sites. Potentiometric-surface maps of the Upper Floridan aquifer indicate the pattern of groundwater flow in the aquifer did not vary greatly from season to season during the study. Potentiometric contours indicate groundwater discharge to the river in the vicinity of Dade City and Lake Panasoffkee. During dry periods, groundwater from the underlying Upper Floridan aquifer contributed to the flow in the river. During wet periods, streamflow had additional contributions from runoff and input from tributaries. Groundwater has a greater effect on streamflow downstream from the Dade City station than upstream from the Dade City station because confinement between surficial deposits and the Upper Floridan aquifer is greater in the Green Swamp area than in downstream areas. Estimates of streamflow gains and losses were made along the Withlacoochee River during base-flow conditions in May 2004, April 2005, and April 2006. Base flow was higher in April 2005 than in May 2004 and April 2006. Consistent net seepage gains were identified in 16 of 20 subreaches analyzed during all seepage runs. The direction of exchange was variable in the remaining four subreaches. Low specific conductance, pH, and calcium concentrations in water from the Withlacoochee River near the headwater area indicated a surface-water system not directly connected to the Upper Floridan aquifer. Downstream from the Dade City station, higher specific conductance, pH, and calcium concentrations in the river water indicated an increasing influence of groundwater, and were similar to groundwater during low-flow conditions. Strontium isotope ratios indicate groundwater originates from shallow parts of the Upper Floridan aquifer in the upper reaches of the river, and from increasingly deeper parts of the aquifer in the downstream direction. Mean annual base-flow estimates also indicate increasing groundwater discharge to the river in the downstream direction. Mean annual base flow estimated using standard hydrograph separation method assumptions ranged from about 4.7 to 5.1 inches per year

Scientific Investigations Report↗

Estimation of the effects of land use and groundwater withdrawals on streamflow for the Pomperaug River, Connecticut

A precipitation runoff model for the Pomperaug River watershed, Connecticut was developed to address issues of concern including the effect of development on streamflow and groundwater recharge, and the implications of water withdrawals on streamflow. The model was parameterized using a strategy that requires a minimum of calibration and optimization by establishing basic relations between the parameter value and physical characteristics of individual hydrologic response units (HRUs) that comprise the model. The strategy was devised so that the information needed can be obtained from Geographic Information System and other general databases for Connecticut. Simulation of groundwater recharge enabled evaluation of the temporal and spatial mapping of recharge variation across the watershed and the spatial effects of changes in land cover on base flow and surface runoff. The modeling indicated that over the course of a year, groundwater provides between 60 and 70 percent of flow in the Pomperaug River; the remainder is generated by more rapid flow through the shallow subsurface and runoff from impermeable surfaces and saturated ground. Groundwater is recharged primarily during periods of low evapotranspiration in the winter, spring, and fall. The largest amount of recharge occurs in the spring in response to snowmelt. During floods, the Weekeepeemee and Nonnewaug Rivers (tributaries that form the Pomperaug River) respond rapidly with little flood peak attenuation due to flood-plain storage. In the Pomperaug River, flood-plain storage is more important in attenuating floods; abandoned quarry ponds (O&G ponds) adjacent to the river provide substantial flood storage above specific river stages when flow from the river spills over the banks and fills the ponds. Discharge from the ponds also helps to sustain low flows in the Pomperaug River. Similarly, releases from the Bronson-Lockwood reservoir sustain flow in the Nonnewaug River and tend to offset the effect of groundwater withdrawals from a well field adjacent to the river during periods of natural low flow. The model indicated that under the current zoning, future development could reduce low flows by as much as 10 percent at the 99 percent exceedance level (99 percent of flows are greater than or equal to this flow), but would not substantially increase the highest flows. Simulation of projected and hypothetical development in the watershed shows, depending on how stormwater is managed, that between 10 and 20 percent effective impervious area in an HRU results in streamflow becoming dominated by the surface-runoff component. This shift from a groundwater-dominated system would likely result in substantial changes in water quality and instream habitat characteristics of the river. Base flow to streams in the Pomperaug River watershed is reduced by both increased impervious surface and increased groundwater withdrawals. For the watershed as a whole, increasing groundwater withdrawals have the potential for causing greater overall reductions in flow compared to increased development and impervious surfaces. Additionally, on the basis of groundwater-modeling simulations, the projected increase in development across the watershed and, to a lesser extent the increase in groundwater withdrawals, will increase the number of local losing reaches experiencing dry conditions and the duration of these dry periods. The location of the losing reaches tends to be in areas near the transition from the uplands to the valley bottoms that are filled with coarse glacial stratified deposits. The simulated increase in the duration and extent of localized dry stream reaches is most sensitive to local increase in impervious surface. Conversion of land from forest or developed land cover to pasture or agricultural land increases groundwater recharge and discharge to streams, while at the same time increasing overall streamflow (the opposite effect as increased impervious surface). These resu

Scientific Investigations Report↗

Analysis of the transport of sediment by the Suncook River in Epsom, Pembroke, and Allenstown, New Hampshire, after the May 2006 flood

During May 13-16, 2006, rainfall in excess of 8.8 inches flooded central and southern New Hampshire. On May 15, 2006, a breach in a bank of the Suncook River in Epsom, New Hampshire, caused the river to follow a new path. In order to assess and predict the effect of the sediment in, and the subsequent flooding on, the river and flood plain, a study by the U.S. Geological Survey (USGS) characterizing sediment transport in the Suncook River was undertaken in cooperation with the Federal Emergency Management Agency (FEMA) and the New Hampshire Department of Environmental Services (NHDES). The U.S. Army Corps of Engineers (USACE) Hydrologic Engineering Center-River Analysis System (HEC-RAS) model was used to simulate flow and the transport of noncohesive sediments in the Suncook River from the upstream corporate limit of Epsom to the river's confluence with the Merrimack River in the Village of Suncook (Allenstown and Pembroke, N.H.), a distance of approximately 16 miles. In addition to determining total sediment loads, analyses in this study reflect flooding potentials for selected recurrence intervals that are based on the Suncook River streamgage flow data (streamgage 01089500) and on streambed elevations predicted by HEC-RAS for the end of water year 2010 (September 30, 2010) in the communities of Epsom, Pembroke, and Allenstown. This report presents changes in streambed and water-surface elevations predicted by the HEC-RAS model using data through the end of water year 2010 for the 50-, 10-, 2-, 1-, 0.2-percent annual exceedence probabilities (2-, 10-, 50-, 100-, and 500-year recurrence-interval floods, respectively), calculated daily and annual total sediment loads, and a determination of aggrading and degrading stream reaches. The model was calibrated and evaluated for a 400-day span from May 8, 2008 through June 11, 2009; these two dates coincided with field collection of stream cross-sectional elevation data. Seven sediment-transport functions were evaluated in the model with the Laursen (Copeland) sediment-transport function best describing the sediment load, transport behavior, and changes in streambed elevation for the specified spatial and temporal conditions of the 400-day calibration period. Simulation results from the model and field-collected sediment data indicate that, downstream of the avulsion channel, for the average daily mean flow during the study period, approximately 100 to 400 tons per day of sediment (varying with daily mean flow) was moving past the Short Falls Road Bridge over the Suncook River in Epsom, while approximately 0.05 to 0.5 tons per day of sediment was moving past the Route 28 bridge in Pembroke and Allenstown, and approximately 1 to 10 tons per day was moving past the Route 3 bridge in Pembroke and Allenstown. Changes in water-surface elevation that the model predicted for the end of water year 2010 to be a result of changes in streambed elevation ranged from a mean increase of 0.20 feet (ft) for the 50-percent annual exceedence-probability flood (2-year recurrence-interval flood) due to an average thalweg increase of 0.88 ft between the Short Falls Road Bridge and the Buck Street Dams in Pembroke and Allenstown to a mean decrease of 0.41 ft for the 50-percent annual exceedence-probability flood due to an average thalweg decrease of 0.49 ft above the avulsion in Epsom. An analysis of shear stress (force created by a fluid acting on sediment particles) was undertaken to determine potential areas of erosion and deposition. Based on the median grain size (d50) and shear stress analysis, the study found that in general, for floods greater than the 50-percent annual exceedence probability flood, the shear stress in the streambed is greater than the critical shear stress in much of the river study reach. The result is an expectation of streambed-sediment movement and erosion even at high exceedence-probability events, pending although the stream ultimately attains equilibrium through stream-stabilization measures or the adjustment of the river over time. The potential for aggradation in the Suncook River is greatest in the reach downstream of the avulsion. Specifically, these reaches are (1) downstream of the former sand pit from adjacent to Round Pond to downstream of the flood chute at the large meander bends, and (2) downstream of the Short Falls Road Bridge to approximately 3,800 ft upstream of the Route 28 bridge. The potential for degradation-net lowering of the streambed-is greatest for the reach upstream of the avulsion to the Route 4 bridge.

New Hampshire↗

Baseline hydrologic studies in the lower Elwha River prior to dam removal

After the removal of two large, long‑standing dams on the Elwha River, Washington, the additional load of sediment and wood is expected to affect the hydrology of the lower river, its estuary, and the alluvial aquifer underlying the surrounding flood plain. To better understand the surface-water and groundwater characteristics of the river and estuary before dam removal, several hydrologic data sets were collected and analyzed. An experiment using a dye tracer characterized transient storage, and it was determined that the low‑flow channel of the lower Elwha River was relatively simple; 1–6 percent of the median travel time of dye was attributed to transient‑storage processes. Water data from monitoring wells adjacent to the main‑stem river indicated a strong hydraulic connectivity between stage in the river and groundwater levels in the flood plain. Analysis of temperature data from the monitoring wells showed that changes in the groundwater temperature responded weeks or months after water temperature changed in the river. A seepage investigation indicated that water from the river was moving into the aquifer (losing reach) between 1.7 and 2.8 kilometers from the river mouth. Surface‑water measurements and temperature and salinity data collected throughout the estuary helped to characterize the magnitude and nature of water movement in and out of the estuary. Salinity and stage sensors positioned in the estuarine network showed a strong surface‑water connection between the river and estuary waters east of the river. In contrast, there was a weaker connection between the river and estuarine water bodies west of the river.

Washington↗

Hydrogeologic framework and groundwater/surface-water interactions of the Chehalis River basin, Washington

The Chehalis River has the largest drainage basin of any river entirely contained within the State of Washington with a watershed of approximately 2,700 mi 2 and has correspondingly diverse geology and land use. Demands for water resources have prompted the local citizens and governments of the Chehalis River basin to coordinate with Federal, State and Tribal agencies through the Chehalis Basin Partnership to develop a long-term watershed management plan. The recognition of the interdependence of groundwater and surface-water resources of the Chehalis River basin became the impetus for this study, the purpose of which is to describe the hydrogeologic framework and groundwater/surface-water interactions of the Chehalis River basin. Surficial geologic maps and 372 drillers' lithostratigraphic logs were used to generalize the basin-wide hydrogeologic framework. Five hydrogeologic units that include aquifers within unconsolidated glacial and alluvial sediments separated by discontinuous confining units were identified. These five units are bounded by a low permeability unit comprised of Tertiary bedrock. A water table map, and generalized groundwater-flow directions in the surficial aquifers, were delineated from water levels measured in wells between July and September 2009. Groundwater generally follows landsurface-topography from the uplands to the alluvial valley of the Chehalis River. Groundwater gradients are highest in tributary valleys such as the Newaukum River valley (approximately 23 cubic feet per mile), relatively flat in the central Chehalis River valley (approximately 6 cubic feet per mile), and become tidally influenced near the outlet of the Chehalis River to Grays Harbor. The dynamic interaction between groundwater and surface-water was observed through the synoptic streamflow measurements, termed a seepage run, made during August 2010, and monitoring of water levels in wells during the 2010 Water Year. The seepage run revealed an overall gain of 56.8 ± 23.7 cubic feet per second over 32.8 river miles (1.7 cubic feet per second per mile), and alternating gains and losses of streamflow ranging from -48.3 to 30.9 cubic feet per second per mile, which became more pronounced on the Chehalis River downstream of Grand Mound. However, most gains and losses were within measurement error. Groundwater levels measured in wells in unconsolidated sediments fluctuated with changes in stream stage, often within several hours. These fluctuations were set by precipitation events in the upper Chehalis River basin and tides of the Pacific Ocean in the lower Chehalis River basin.±

Scientific Investigations Report↗

Trends in suspended-sediment loads and concentrations in the Mississippi River Basin, 1950–2009

Trends in loads and concentrations of suspended sediment and suspended sand generally were downward for stations within the Mississippi River Basin during the 60-, 34-, and 12-year periods analyzed. Sediment transport in the lower Mississippi River has historically been, and continues to be, most closely correlative to sediment contributions from the Missouri River, which generally carried the largest annual suspended-sediment load of the major Mississippi River subbasins. The closure of Fort Randall Dam in the upper Missouri River in 1952 was the single largest event in the recorded historical decline of suspended-sediment loads in the Mississippi River Basin. Impoundments on tributaries and sediment reductions as a result of implementation of agricultural conservation practices throughout the basin likely account for much of the remaining Mississippi River sediment transport decline. Scour of the main-stem channel downstream from the upper Missouri River impoundments is likely the largest source of suspended sand in the lower Missouri River. The Ohio River was second to the Missouri River in terms of sediment contributions, followed by the upper Mississippi and Arkansas Rivers. Declines in sediment loads and concentrations continued through the most recent analysis period (1998–2009) at available Mississippi River Basin stations. Analyses of flow-adjusted concentrations of suspended sediment indicate the recent downward temporal changes generally can be explained by corresponding decreases in streamflows.

Mississippi River Basin↗

Quality of water in the White River and Lake Tapps, Pierce County, Washington, May-December 2010

The White River and Lake Tapps are part of a hydropower system completed in 1911–12. The system begins with a diversion dam on the White River that routes a portion of White River water into the southeastern end of Lake Tapps, which functioned as a storage reservoir for power generation. The stored water passed through the hydroelectric facilities at the northwestern end of the lake and returned to the White River through the powerhouse tailrace. Power generation ceased in January 2004, which altered the hydrology of the system by reducing volumes of water diverted out of the river, stored, and released through the powerhouse. This study conducted from May to December 2010 created a set of baseline data collected under a new flow regime for selected reaches of the White River, the White River Canal (Inflow), Lake Tapps Diversion (Tailrace) at the powerhouse, and Lake Tapps. Three sites, one on the White River at Headworks, one on the White River at R Street, and one on the Tailrace, were equipped for continuous recording of water-quality data, and three sites (Headworks, White River Canal Inflow, and Tailrace) were sampled for discrete water-quality data. Nine lake sites were measured for physical and water-quality properties and samples were collected for analyses of nutrients, suspended solids, and fecal-coliform bacteria concentrations. Samples from the lake also were analyzed for concentrations of chlorophyll a and organic chemicals. Discrete samples indicated that water from the White River, White River Canal Inflow, and Tailrace sites generally was turbid, warm, chemically dilute, and well-oxygenated. Exceptions occurred at the sites when flow to the White River Canal was suspended or when little or no flow was released from the lake into the Tailrace. The quality of physical properties and concentrations in water measured continuously at the three sites generally was good and met the freshwater criteria designated by Washington State Department of Ecology for recreational and aquatic-life uses, with several exceptions. The 7-day average of daily maximum temperatures (7–DADMax) was greater than the freshwater aquatic life criterion of 16 degrees Celsius (°C) for core summer salmonid habitat on 6 days at the Headworks site and 37 days at the R-Street site during the study. The 7-DADMax temperatures were greater than the 13°C criterion for spawning, rearing, and incubation on 6 days at the Headworks site and 20 days at the R-Street site. The freshwater aquatic life criterion for dissolved oxygen of 9.5 milligrams per liter (mg/L) for core summer salmonid habitat was not met at the Headworks and R-Street sites for periods during July and August 2010. Exceptions also occurred at the Headworks site for measurements of pH, which were greater than the aquatic life upper limit of 8.5 pH units during July 2010. Aquatic life pH criteria were not met at the Tailrace site during June, July, and August 2010, when pH was greater than 8.5 pH units, and during August 2010 when pH decreased to less than 6.5 pH units. Lake Tapps water near the surface was relatively clear, warm, and well oxygenated. The clearest water of the nine lake sites was at the Deep site with a median Secchi disk transparency measurement of 6.05 m (meters), which represents a two- to six-fold increase over historical measurements of transparency at this location. Median water temperatures were 18.2–18.9°C and maximums were from 22.9–25.0°C. Median dissolved oxygen concentrations were greater than 8.42 mg/L and minimums generally were not lower than 7.4 mg/L. By early July 2010, weak thermal stratification developed at most lake sites into at least a warm surface layer overlying a small thermocline. A well-defined hypolimnion developed below the thermocline only at the Deep site. With the development of thermal stratification, hypolimnion water became anoxic at several sites (Deep, Tapps Island, Snag Island, and Lake Outlet). By late September 2010, an anoxic layer about 15 m thick had formed in the hypolimnion of the Deep site. Mixing during autumn overturn in late November re-oxygenated the water column of all the sites with about 10–12 mg/L of dissolved oxygen. On the basis of pH and specific conductance measurements, Lake Tapps water is pH neutral and chemically dilute. Median pH values for water in the epilimnion and the hypolimnion ranged from 6.84 to 7.64 pH units and maximums did not exceed 7.8 pH units at any site. Median specific conductance was typically less than 70 microsiemens per centimeter at 25°C for the epilimnion and the hypolimnion. Concentrations of nutrients and chlorophyll a in Lake Tapps were low. At most of the sites and in most of the samples from the epilimnion, total phosphorus concentrations were less than the Washington State Department of Ecology phosphorus criterion of 0.01 mg/L for maintaining oligotrophic conditions. Median concentrations of total nitrogen (unfiltered water) ranged from about 0.14 mg/L (Deep, Tapps Island, and Dike 2B sites) to about 0.18 mg/L (Allan Yorke and Lake Inlet sites). Chlorophyll a concentrations were low with median concentrations of 2.16 micrograms per liter (mg/L) or less. The majority of chlorophyll a concentrations were well below the Oregon Department of Environmental Quality action level of 10 mg/L. Using the Carlson Trophic-Status Index and average measures of transparency, chlorophyll a , and total phosphorus data from this study, Lake Tapps generally fits within the oligotrophic classification, but with a few exceptions. At Allan Yorke, Lake Inlet, and Southeast Arm sites, the chlorophyll a and total phosphorus indexes of nearly 40 approach the upper limit of oligotrophic conditions. In addition, average concentrations of total phosphorus at Lake Inlet and Southeast Arm are at Nürnberg's (1996) threshold concentration of 0.01 mg/L, which suggests a slight tendency towards mesotrophic conditions at these two sites during summer July–September. On the basis of epilimnetic nitrogen to phosphorus concentration ratios of greater than 17, Lake Tapps primary production is phosphorus limited at all but two study sites. At the Lake Inlet and Southeast Arm sites, ratios of 15 and 16, respectively, for the summer period suggest either nitrogen or phosphorus (or both) may limit algal growth. Water samples collected at the Allan Yorke, Snag Island, and Lake Outlet study sites were screened for the presence of more than 250 organic chemicals. A total of 14 compounds were detected in trace amounts (or determined to be present) at one or more of the 3 sites. The Allan Yorke site had 9 detections, the Snag Island site had 10 detections, and the Lake Outlet site had 5 detections of compounds mostly belonging to the group of wastewater indicator chemicals. Compounds detected (or with verified presence) at all three sites included the herbicide 2,4-D, the insecticide and mosquito repellant DEET, the herbicide fluridone used for Eurasian watermilfoil eradication, and the herbicide prometon. The largest concentrations of these compounds were in samples from the Allan Yorke site; the lowest concentrations were from the Lake Outlet site.

Washington↗

Hydrogeologic framework of the Wood River Valley aquifer system, south-central Idaho

The Wood River Valley contains most of the population of Blaine County and the cities of Sun Valley, Ketchum, Hailey, and Bellevue. This mountain valley is underlain by the alluvial Wood River Valley aquifer system, which consists primarily of a single unconfined aquifer that underlies the entire valley, an underlying confined aquifer that is present only in the southernmost valley, and the confining unit that separates them. The entire population of the area depends on groundwater for domestic supply, either from domestic or municipal-supply wells, and rapid population growth since the 1970s has caused concern about the long-term sustainability of the groundwater resource. As part of an ongoing U.S. Geological Survey effort to characterize the groundwater resources of the Wood River Valley, this report describes the hydrogeologic framework of the Wood River Valley aquifer system. Although most of the Wood River Valley aquifer system is composed of Quaternary-age sediments and basalts of the Wood River Valley and its tributaries, older igneous, sedimentary, or metamorphic rocks that underlie these Quaternary deposits also are used for water supply. It is unclear to what extent these rocks are hydraulically connected to the main part of Wood River Valley aquifer system and thus whether they constitute separate aquifers. Paleozoic sedimentary rocks in and near the study area that produce water to wells and springs are the Phi Kappa and Trail Creek Formations (Ordovician and Silurian), the Milligen Formation (Devonian), and the Sun Valley Group including the Wood River Formation (Pennsylvanian-Permian) and the Dollarhide Formation (Permian). These sedimentary rocks are intruded by granitic rocks of the Late Cretaceous Idaho batholith. Eocene Challis Volcanic Group rocks overlie all of the older rocks (except where removed by erosion). Miocene Idavada Volcanics are found in the southern part of the study area. Most of these rocks have been folded, faulted, and metamorphosed to some degree, thus rock types and their relationships vary over distance. Quaternary-age sediment and basalt compose the primary source of groundwater in the Wood River Valley aquifer system. These Quaternary deposits can be divided into three units: a coarse-grained sand and gravel unit, a fine-grained silt and clay unit, and a single basalt unit. The fine- and coarse-grained units were primarily deposited as alluvium derived from glaciation in the surrounding mountains and upper reaches of tributary canyons. The basalt unit is found in the southeastern Bellevue fan area and is composed of two flows of different ages. Most of the groundwater produced from the Wood River Valley aquifer system is from the coarse-grained deposits. The altitude of the pre-Quaternary bedrock surface in the Wood River Valley was compiled from about 1,000 well-driller reports for boreholes drilled to bedrock and about 70 Horizontal-to-Vertical Spectral Ratio (HVSR) ambient-noise measurements. The bedrock surface generally mimics the land surface by decreasing down tributary canyons and the main valley from north to south; it ranges from more than 6,700 feet in Baker Creek to less than 4,600 feet in the central Bellevue fan. Most of the south-central portion of the Bellevue fan is underlain by an apparent topographically closed area on the bedrock surface that appears to drain to the southwest towards Stanton Crossing. Quaternary sediment thickness ranges from less than a foot on main and tributary valley margins to about 350 feet in the central Bellevue fan. Hydraulic conductivity for 81 wells in the study area was estimated from well-performance tests reported on well-driller reports. Estimated hydraulic conductivity for 79 wells completed in alluvium ranges from 1,900 feet per day (ft/d) along Warm Springs Creek to less than 1 ft/d in upper Croy Canyon. A well completed in bedrock had an estimated hydraulic conductivity value of 10 ft/d, one well completed in basalt had a value of 50 ft/d, and three wells completed in the confined system had values ranging from 32 to 52 ft/d. Subsurface outflow of groundwater from the Wood River Valley aquifer system into the eastern Snake River Plain aquifer was estimated to be 4,000 acre-feet per year. Groundwater outflow beneath Stanton Crossing to the Camas Prairie was estimated to be 300 acre-feet per year.

Idaho↗

Flow-adjusted trends in dissolved selenium load and concentration in the Gunnison and Colorado Rivers near Grand Junction, Colorado, water years 1986--2008

As a result of elevated selenium concentrations, many western Colorado rivers and streams are on the U.S. Environmental Protection Agency 2010 Colorado 303(d) list, including the main stem of the Colorado River from the Gunnison River confluence to the Utah border. Selenium is a trace metal that bioaccumulates in aquatic food chains and can cause reproductive failure, deformities, and other adverse impacts in birds and fish, including several threatened and endangered fish species. Salinity in the upper Colorado River has been the focus of source-control efforts for many years. Although salinity loads and concentrations have been previously characterized at the U.S. Geological Survey (USGS) streamflow-gaging stations at the Gunnison River near Grand Junction, Colo., and at the Colorado River near the Colorado-Utah State line, trends in selenium load and concentration at these two stations have not been studied. The USGS, in cooperation with the Bureau of Reclamation and the Colorado River Water Conservation District, evaluated dissolved selenium (herein referred to as "selenium") load and concentration trends at these two sites to inform decision makers on the status and trends of selenium. This report presents results of the evaluation of trends in selenium load and concentration for two USGS streamflow-gaging stations: the Gunnison River near Grand Junction, Colo. ("Gunnison River site"), USGS site 09152500, and the Colorado River near Colorado-Utah State line ("Colorado River site"), USGS site 09163500. Flow-adjusted selenium loads were estimated for the beginning water year (WY) of the study, 1986, and the ending WY of the study, 2008. The difference between flow-adjusted selenium loads for WY 1986 and WY 2008 was selected as the method of analysis because flow adjustment removes the natural variations in load caused by changes in mean-daily streamflow, emphasizing human-caused changes in selenium load and concentration. Overall changes in human-caused effects in selenium loads and concentrations during the period of study are of primary interest to the cooperators. Selenium loads for each of the 2 water years were calculated by using normalized mean-daily streamflow, measured selenium concentration, standard linear regression techniques, and data previously collected at the two study sites. Mean-daily streamflow was normalized for each site by averaging the daily streamflow for each day of the year over the 23-year period of record. Thus, for the beginning and ending water years, estimations could be made of loads that would have occurred without the effect of year-to-year streamflow variation. The loads thus calculated are illustrative of the change in loads between water years 1986 and 2008, and are not the actual loads that occurred in those 2 water years. The estimated 50th and 85th percentile selenium concentrations associated with the selenium loads were also calculated for WY 1986 and WY 2008 at each site. Time-trends in selenium concentration at the two sites were charted by using regression techniques for partial residuals for the entire study period (WY 1986 through WY 2008). Annual selenium load for the Gunnison River site was estimated to be 23,196 pounds for WY 1986 and 16,560 pounds for WY 2008, a 28.6 percent decrease. Lower and upper 95-percent confidence levels for WY 1986 annual load were 22,360 and 24,032 pounds. Lower and upper 95-percent confidence levels for WY 2008 annual load were 15,724 and 17,396 pounds. Estimated 50th percentile daily selenium concentrations decreased from 6.41 to 4.57 micrograms/liter from WY 1986 to WY 2008, whereas estimated 85th percentile daily selenium concentrations decreased from 7.21 to 5.13 micrograms/liter from WY 1986 to WY 2008. Annual selenium load for the Colorado River site was estimated to be 56,587 pounds for WY 1986 and 34,344 pounds for WY 2008, a 39.3 percent decrease. Lower and upper 95-percent confidence levels for WY 1986 annual load were 53,785 and 59,390 pounds. Lower and upper 95-percent confidence levels for WY 2008 annual load were 31,542 and 37,147 pounds. Estimated 50th percentile daily selenium concentrations decreased from 6.44 to 3.86 micrograms/liter from WY 1986 to WY 2008, whereas estimated 85th percentile daily selenium concentrations decreased from 7.94 to 4.72 micrograms/liter from WY 1986 to WY 2008.

Colorado↗

Grain-size distribution and selected major and trace element concentrations in bed-sediment cores from the Lower Granite Reservoir and Snake and Clearwater Rivers, eastern Washington and northern Idaho, 2010

Lower Granite Dam impounds the Snake and Clearwater Rivers in eastern Washington and northern Idaho, forming Lower Granite Reservoir. Since 1975, the U.S. Army Corps of Engineers has dredged sediment from the Lower Granite Reservoir and the Snake and Clearwater Rivers in eastern Washington and northern Idaho to keep navigation channels clear and to maintain the flow capacity. In recent years, other Federal agencies, Native American governments, and special interest groups have questioned the negative effects that dredging might have on threatened or endangered species. To help address these concerns, the U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, collected and analyzed bed-sediment core samples (hereinafter cores) in Lower Granite Reservoir and impounded or backwater affected parts of the Snake and Clearwater Rivers. Cores were collected during the spring and fall of 2010 from submerged sampling locations in the Lower Granite Reservoir, and Snake and Clearwater Rivers. A total of 69 cores were collected by using one or more of the following corers: piston, gravity, vibrating, or box. From these 69 cores, 185 subsamples were removed and submitted for grain size analyses, 50 of which were surficial-sediment subsamples. Fifty subsamples were also submitted for major and trace elemental analyses. Surficial-sediment subsamples from cores collected from sites at the lower end of the reservoir near the dam, where stream velocities are lower, generally had the largest percentages of silt and clay (more than 80 percent). Conversely, all of the surficial-sediment subsamples collected from sites in the Snake River had less than 20 percent silt and clay. Most of the surficial-sediment subsamples collected from sites in the Clearwater River contained less than 40 percent silt and clay. Surficial-sediment subsamples collected near midchannel at the confluence generally had more silt and clay than most surficial-sediment subsamples collected from sites on the Snake and Clearwater Rivers or even sites further downstream in Lower Granite Reservoir. Two cores collected at the confluence and all three cores collected on the Clearwater River immediately upstream from the confluence were extracted from a thick sediment deposit as shown by the cross section generated from the bathymetric surveys. The thick sediment deposits at the confluence and on the Clearwater River may be associated with floods in 1996 and 1997 on the Clearwater River. Fifty subsamples from 15 cores were analyzed for major and trace elements. Concentrations of trace elements were low, with respect to sediment quality guidelines, in most cores. Typically, major and trace element concentrations were lower in the subsamples collected from the Snake River compared to those collected from the Clearwater River, the confluence of the Snake and Clearwater Rivers, and Lower Granite Reservoir. Generally, lower concentrations of major and trace elements were associated with coarser sediments (larger than 0.0625 millimeter) and higher concentrations of major and trace elements were associated with finer sediments (smaller than 0.0625 millimeter).

Idaho, Washington↗

Calibration of a two-dimensional hydrodynamic model for parts of the Allegheny, Monongahela, and Ohio Rivers, Allegheny County, Pennsylvania

The U.S. Geological Survey (USGS), in cooperation with the Allegheny County Sanitary Authority, developed a validated two-dimensional Resource Management Associates2 (RMA2) hydrodynamic model of parts of the Allegheny, Monongahela, and Ohio Rivers (Three Rivers) to help assess the effects of combined sewer overflows (CSOs) and sanitary sewer overflows (SSOs) on the rivers. The hydrodynamic model was used to drive a water-quality model of the study area that was capable of simulating the transport and fate of fecal-indicator bacteria and chemical constituents under open-water conditions. The study area includes 14 tributary streams and parts of the Three Rivers where they enter and exit Allegheny County, an area of approximately 730 square miles (mi 2 ). The city of Pittsburgh is near the center of the county, where the Allegheny and Monongahela Rivers join to form the headwaters of the Ohio River. The Three Rivers are regulated by a series of fixed-crest dams, gated dams, and radial (tainter) gates and serve as the receiving waters for tributary streams, CSOs, and SSOs. The RMA2 model was separated into four individual segments on the basis of the U.S. Army Corps of Engineers navigational pools in the study area (Dashields; Emsworth; Allegheny River, Pool 2; and Braddock), which were calibrated individually using measured water-surface slope, velocity, and discharge during high- and low-flow conditions. The model calibration process included the comparison of water-surface elevations at five locations and velocity profiles at more than 80 cross sections in the study area. On the basis of the calibration and validation results that included water-surface elevations and velocities, the model is a representative simulation of the Three Rivers flow patterns for discharges ranging from 4,050 to 47,400 cubic feet per second (ft 3 /s) on the Allegheny River, 2,550 to 40,000 ft 3 /s on the Monongahela River, and 10,900 to 99,000 ft 3 /s on the Ohio River. The Monongahela River was characterized by unsteady conditions during low and high flows, which affected the calibration range. The simulated low-flow water-surface elevations typically were within 0.2 feet (ft) of measured values, whereas the simulated high-flow water-surface elevations were typically within 0.3 ft of the measured values. The mean error between simulated and measured velocities was less than 0.07 ft/s for low-flow conditions and less than 0.17 ft/s for high-flow conditions.

Pennsylvania↗

Nitrate in the Mississippi River and its tributaries, 1980-2010: an update

Nitrate concentration and flux were estimated from 1980 through 2010 at eight sites in the Mississippi River Basin as part of the National Water-Quality Assessment (NAWQA) Program of the U.S. Geological Survey (USGS). These estimates extend the results from a previous investigation that provided nitrate estimates from 1980 through 2008 at the same sites. From 1980 through 2010, annual flow-normalized (FN) nitrate concentration and flux in the Iowa and Illinois Rivers decreased by 11 to 15 percent. These two rivers had the highest FN nitrate concentration in 1980 (5.3 milligrams per liter [mg/L] and 3.9 mg/L, respectively) of any of the study sites. Nitrate increased in the Missouri River (79 and 45 percent increase in FN concentration and flux, respectively), and at the four sites on the Mississippi River (17 to 70 percent increase in FN concentration and 8 to 55 percent increase in FN flux) from 1980 through 2010. Nitrate in the Ohio River was generally stable during this time. Historically, nitrate was high and changed little in the Iowa and Illinois Rivers; however, nitrate concentrations began to decrease around 2000, and this decrease continued through 2010. Also during this time, near-flat nitrate trends in lower sections of the Mississippi River began increasing, likely reflecting the acceleration of already increasing nitrate trends in the upper Mississippi and Missouri Rivers, in addition to increases in inputs from other tributaries in the lower part of the Mississippi River Basin. Spring trends (April through June) generally parallel annual trends at all sites from 1980 through 2010, except in the Iowa River where decreasing nitrate during the spring was not observed. In general, most sites had increases in nitrate concentration at low streamflows, which suggests increases in legacy nitrate from groundwater or point source contributions. In aggregate, the decreases in nitrate concentrations from the Iowa and Illinois Rivers, which largely occurred during high flows, appear to be overshadowed by increasing nitrate concentrations across much of the Mississippi River Basin.

Gulf Of Mexico;Illinois River;Iowa River;Mississip↗

Upstream factors affecting Tualatin River algae—Tracking the 2008 Anabaena algae bloom to Wapato Lake, Oregon

Significant Findings A large bloom that included floating mats of the blue-green algae Anabaena flos-aquae occurred in the lower 20 miles of the Tualatin River in northwestern Oregon between July 7 and July 17, 2008. The floating bloom was deemed a hazard to recreational users of the river due to the potential production of algal toxins (anatoxin- a and microcystin), and a public health advisory was posted for the lower 10.8 miles of the river by the Oregon Department of Human Services for July 12–25, 2008. The bloom caused nuisance taste and odor issues and required modified drinking-water treatment techniques where water was withdrawn for municipal uses in the upper reaches of the Tualatin River, some 46 miles upstream of the worst algae problems. Using water sample data from Clean Water Services and the Joint Water Commission, and continuous and discrete monitoring data from the U.S. Geological Survey, the source of the anomalous water-quality conditions and the likely source of the Anabaena bloom was traced upstream to discharges from the Wapato Lake agricultural area near Gaston, Oregon, in the upper part of the watershed near river mile 60. The Wapato Lake algae bloom occurred as standing water remained on the lakebed far longer than normal—into early summer. A failure of the levee on the edge of Wapato Lake in December 2007 caused by heavy rainfall and high water in the canal outside the levee inundated the lakebed to a depth of 7–9 feet, storing thousands of acre-feet more water than its normal winter volume. The water could not be pumped out until the levee was repaired or river levels receded, thus delaying drainage of the lake until summer and facilitating the bloom. In normal summers, the lower Tualatin River grows a moderate crop of algae that responds strongly to streamflow (residence time), light available for photosynthesis, and phosphorus concentrations. In 2008, however, inoculation of the river with phytoplankton and zooplankton discharged from Wapato Lake some 30 miles upstream of the lower, pooled reach of the river demonstrated the importance of upstream factors on plankton communities and water-quality conditions in the Tualatin River. The Wapato Lake algae bloom of July 2008 provided useful information and lessons for agencies managing public health, wetlands, agricultural activities, and water quality in the Tualatin River basin and similar river basins elsewhere. The results and insights derived from this study can be used to enhance future monitoring and data collection strategies designed to improve water quality and plankton models and better predict dissolved-oxygen concentrations in the lower Tualatin River.

Oregon↗

Physical characteristics of the lower San Joaquin River, California, in relation to white sturgeon spawning habitat, 2011–14

The U.S. Fish and Wildlife Service confirmed that white sturgeon ( Acipenser transmontanus ) recently spawned in the lower San Joaquin River, California. Decreases in the San Francisco Bay estuary white sturgeon population have led to an increased effort to understand their migration behavior and habitat preferences. The preferred spawning habitat of other white sturgeon (for example, those in the Columbia and Klamath Rivers) is thought to be areas that have high water velocity, deep pools, and coarse bed material. Coarse bed material (pebbles and cobbles), in particular, is important for the survival of white sturgeon eggs and larvae. Knowledge of the physical characteristics of the lower San Joaquin River can be used to preserve sturgeon spawning habitat and lead to management decisions that could help increase the San Francisco Bay estuary white sturgeon population. Between 2011 and 2014, the U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, assessed selected reaches and tributaries of the lower river in relation to sturgeon spawning habitat by (1) describing selected spawning reaches in terms of habitat-related physical characteristics (such as water depth and velocity, channel slope, and bed material) of the lower San Joaquin River between its confluences with the Stanislaus and Merced Rivers, (2) describing variations in these physical characteristics during wet and dry years, and (3) identifying potential reasons for these variations. The lower San Joaquin River was divided into five study reaches. Although data were collected from all study reaches, three subreaches where the USFWS collected viable eggs at multiple sites in 2011–12 from Orestimba Creek to Sturgeon Bend were of special interest. Water depth and velocity were measured using two different approaches—channel cross sections and longitudinal profiles—and data were collected using an acoustic Doppler current profiler. During the first year of data collection (water year 2011), runoff was greatest, and gaged streamflow, measured as discharge, peaked at 875 cubic meters per second in the lower San Joaquin River. Also during that year, water velocity was generally between 0.6 and 0.9 meters per second, and depth was typically between 2.5 and 4.5 meters, but water depth exceeded 6 meters in several pools. Water year 2011 was classified as a “ wet ” year. Later water years were classified as either “ dry ” (water year 2012) or “ critical ” (water years 2013 and 2014). During the drier years, water was shallower, and velocities were slower. The streambed aggraded in several areas during the study. At Sturgeon Bend, for example, which had the deepest pool measured in 2011 (maximum depth was 14 meters), about 8 meters of sediment was deposited by 2014. The bed of the lower San Joaquin River was predominately sand, except in areas downstream from the mouth of Del Puerto Creek. A large amount of sand, gravel, and cobble was deposited at the mouth of Del Puerto Creek, and in the 9.5 kilometers downstream from the mouth of Del Puerto Creek, we encountered several gravel bars and patches of gravel-size (8–64 millimeters) bed material. Del Puerto and Orestimba Creeks drain from the Coast Ranges on the west side of the river. Only small quantities of gravel-size bed material were observed in the reach downstream from Orestimba Creek, indicating Orestimba Creek does not deliver much coarse sediment to the lower San Joaquin River. Del Puerto Creek appeared to be the primary source of gravels suitable for white sturgeon spawning in the lower San Joaquin River, and thus, it is important for the long-term spawning success of sturgeon in the San Joaquin River.

California↗