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Suwannee river basin and estuary integrated science workshop: September 22-24, 2004 Cedar Key, Florida

In response to the growing number of environmental concerns in the mostly pristine Suwannee River Basin and the Suwannee River Estuary system, the States of Florida and Georgia, the Federal government, and other local organizations have identified the Suwannee River as an ecosystem in need of protection because of its unique biota and important water resources. Organizations with vested interests in the region formed a coalition, the Suwannee Basin Interagency Alliance (SBIA), whose goals are to promote coordination in the identification, management, and scientific knowledge of the natural resources in the basin and estuary. To date, an integrated assessment of the physical, biological, and water resources has not been completed. A holistic, multi-disciplinary approach is being pursued to address the research needs in the basin and estuary and to provide supportive data for meeting management objectives of the entire ecosystem. The USGS is well situated to focus on the larger concerns of the basin and estuary by addressing specific research questions linking water supply and quality to ecosystem function and health across county and state boundaries. A strategic plan is being prepared in cooperation with Federal, State, and local agencies to identify and implement studies to address the most compelling research issues and management questions, and to conduct fundamental environmental monitoring studies. The USGS, Suwannee River Water Management District and the Florida Marine Research Institute are co-sponsoring this scientific workshop on the Suwannee River Basin and Estuary to: Discuss current and past research findings, Identify information gaps and research priorities, and Develop an action plan for coordinated and relevant research activities in the future. This workshop builds on the highly successful basin-wide conference sponsored by the Suwannee Basin Interagency Alliance that was held three years ago in Live Oak, Florida. This years workshop will focus on identifying information needs and priorities and developing partnerships. The USGS is seeking to define the role of the USGS Florida Integrated Science Center (FISC) in conducting integrated research in the Suwannee River Basin, and to establish a cooperative program with other agencies. Participants interested in river, floodplain, springs, estuary, or basin-wide issues are encouraged to attend. Topics for this years workshop include: Water quality and geochemistry: nutrient enrichment, reduction of nutrient loading to ground water, contaminants, and land use, Hydrogeology: interactions among ground water, surface water and ecosystem, modeling, and baseline mapping, Ecosystem dynamics: structure, process, species, and habitats (estuarine, riverine, floodplain, and wetland), and Information management: data sharing, database development, geographic information system (GIS), and basin-wide models.

Open-File Report↗

Channel change and bed-material transport in the Lower Chetco River, Oregon

The lower Chetco River is a wandering gravel-bed river flanked by abundant and large gravel bars formed of coarse bed-material sediment. Since the early twentieth century, the large gravel bars have been a source of commercial aggregate for which ongoing permitting and aquatic habitat concerns have motivated this assessment of historical channel change and sediment transport rates. Analysis of historical channel change and bed-material transport rates for the lower 18 kilometers shows that the upper reaches of the study area are primarily transport zones, with bar positions fixed by valley geometry and active bars mainly providing transient storage of bed material. Downstream reaches, especially near the confluence of the North Fork Chetco River, are zones of active sedimentation and channel migration. Multiple analyses, supported by direct measurements of bedload during winter 2008–09, indicate that since 1970 the mean annual flux of bed material into the study reach has been about 40,000–100,000 cubic meters per year. Downstream tributary input of bed-material sediment, probably averaging 5–30 percent of the influx coming into the study reach from upstream, is approximately balanced by bed-material attrition by abrasion. Probably little bed material leaves the lower river under natural conditions, with most net influx historically accumulating in wider and more dynamic reaches, especially near the North Fork Chetco River confluence, 8 kilometers upstream from the Pacific Ocean. The year-to-year flux, however, varies tremendously. Some years may have less than 3,000 cubic meters of bed material entering the study area; by contrast, some high-flow years, such as 1982 and 1997, likely have more than 150,000 cubic meters entering the reach. For comparison, the estimated annual volume of gravel extracted from the lower Chetco River for commercial aggregate during 2000–2008 has ranged from 32,000 to 90,000 cubic meters and averaged about 59,000 cubic meters per year. Mined volumes probably exceeded 140,000 cubic meters per year for several years in the late 1970s. Repeat surveys and map analyses indicate a reduction in bar area and sinuosity between 1939 and 2008, chiefly in the period 1965–95. Repeat topographic and bathymetric surveys show channel incision for substantial portions of the study reach, with local areas of bed lowering by as much as 2 meters. A specific gage analysis at the upstream end of the study reach indicates that incision and narrowing followed aggradation culminating in the late 1970s. These observations are all consistent with a reduction of sediment supply relative to transport capacity since channel surveys in the late 1970s, probably owing to a combination of (1) bed sediment removal and (2) transient river adjustments to large sediment volumes brought by floods such as those in 1964 and, to a lesser extent, 1996.

Oregon↗

Development of the Hydroecological Integrity Assessment Process for Determining Environmental Flows for New Jersey Streams

The natural flow regime paradigm and parallel stream ecological concepts and theories have established the benefits of maintaining or restoring the full range of natural hydrologic variation for physiochemical processes, biodiversity, and the evolutionary potential of aquatic and riparian communities. A synthesis of recent advances in hydroecological research coupled with stream classification has resulted in a new process to determine environmental flows and assess hydrologic alteration. This process has national and international applicability. It allows classification of streams into hydrologic stream classes and identification of a set of non-redundant and ecologically relevant hydrologic indices for 10 critical sub-components of flow. Three computer programs have been developed for implementing the Hydroecological Integrity Assessment Process (HIP): (1) the Hydrologic Indices Tool (HIT), which calculates 171 ecologically relevant hydrologic indices on the basis of daily-flow and peak-flow stream-gage data; (2) the New Jersey Hydrologic Assessment Tool (NJHAT), which can be used to establish a hydrologic baseline period, provide options for setting baseline environmental-flow standards, and compare past and proposed streamflow alterations; and (3) the New Jersey Stream Classification Tool (NJSCT), designed for placing unclassified streams into pre-defined stream classes. Biological and multivariate response models including principal-component, cluster, and discriminant-function analyses aided in the development of software and implementation of the HIP for New Jersey. A pilot effort is currently underway by the New Jersey Department of Environmental Protection in which the HIP is being used to evaluate the effects of past and proposed surface-water use, ground-water extraction, and land-use changes on stream ecosystems while determining the most effective way to integrate the process into ongoing regulatory programs. Ultimately, this scientifically defensible process will help to quantify the effects of anthropogenic changes and development on hydrologic variability and help planners and resource managers balance current and future water requirements with ecological needs.

Scientific Investigations Report↗

Temporal Differences in Flow Depth and Velocity Distributions and Hydraulic Microhabitats Near Bridges of the Lower Platte River, Nebraska, 1934-2006

As part of a collaborative study of the cumulative impacts on stream and riparian ecology of water and channel management practices in the lower Platte River, Nebraska, this report describes a study by the U.S. Geological Survey in cooperation with the Lower Platte South Natural Resources District that summarizes: (1) temporal differences in distribution of streamflow depth, velocity, and microhabitats among five discrete 11-water-year periods 1934-44, 1951-61, 1966-76, 1985-95, and 1996-2006, and (2) the effects of bridge proximity on distribution of streamflow depth, velocity, and microhabitat of the Platte River when cross sections were measured at a similar discharge. The scope of the study included the four presently (2008) active streamflow-gaging stations located near bridges over the lower Platte River at North Bend, near Leshara, near Ashland, and at Louisville, Nebraska, and the most downstream streamflow-gaging station within the central Platte River segment near Duncan, Nebraska. Generally, in cases where temporal differences in streamflow depth and velocity were evident, at least one of the water-year periods from 1934 through 1995 had deeper streamflow than the recent water-year period (1996-2006). Temporal differences in distributions of streamflow depth were not strongly associated with differences in either climatic conditions or the maximum peak flow that occurred prior to the latest discharge measurement during each period. The relative cross-sectional area of most hydraulic niches did not differ among the water-year periods. Part of this apparent uniformity likely was an artifact of the broad microhabitat classification used for this study. In cases where temporal differences in relative cross-sectional area of hydraulic niches were evidenced, the differences occurred during high- and low-flow conditions, not during median flow conditions. The temporal differences in relative cross-sectional area were found more frequently for hydraulic niches defined by moderate and fast velocities than for hydraulic niches defined by slow velocities. Generally, any significant increase or decrease in the relative cross-sectional areas of hydraulic niches during the water-year periods from 1934 through 1995 had disappeared during the most recent water-year period, 1996-2006. Deep-Swift niche was the predominant hydraulic niche for all near-bridge sites on the lower Platte River for high- and median-flow conditions. The Deep-Swift niche also was the predominant niche for the near-bridge sites near Ashland and at Louisville for low-flow conditions; for the near-bridge sites at North Bend and near Leshara, streamflow cross-sectional areas during low-flow conditions were shared among the Shallow-Moderate, Intermediate-Moderate, Intermediate-Swift, and Deep-Swift hydraulic niches. For the near-bridge site near Duncan, the site farthest downstream in the central Platte River system, the Deep-Swift hydraulic niche was predominant only during high-flow conditions; during median- and low-flow conditions the relative cross-sectional area was shared among the Shallow-Slow, Shallow-Moderate, Intermediate-Moderate, and Intermediate-Swift hydraulic niches. Significant temporal differences in the relative cross-sectional area of the Deep-Swift hydraulic niche were found for sites near the two farthest downstream bridges near Ashland and at Louisville, but only for low-flow conditions. The Deep-Swift microhabitat was of special interest because it is the preferred hydraulic habitat during the adult life of the endangered pallid sturgeon (Scaphirhynchus albus). Temporal differences in relative cross-sectional areas of the Glide low-flow geomorphic microhabitat that contained the Deep-Swift hydraulic niche also indicated that relative cross-sectional areas of the Glide during the 1951-61 and 1996-2006 water-year periods were lower than during the 1966-76 period. The temporal differences indicated that any significant temporal chang

Scientific Investigations Report↗

Water-resources activities of the U.S. Geological Survey in Texas; fiscal years 1982-84

The U.S. Geological Survey (USGS) was established by an act of Congress on March 3, 1879, to provide a permanent Federal agency to conduct the systematic and scientific classification of the public lands, and examination of the geological structure, mineral resources, and products of national domain. An integral part of that original mission includes publishing and disseminating the earth-science information needed to understand, to plan the use of, and to manage the Nation's energy, land, mineral, and water resources. Since 1879, the research and fact-finding role of the USGS has grown and been modified to meet the changing needs of the Nation it serves. As part of that evolution, the USGS has become the Federal Government's largest earth-science research agency, the Nation's largest civilian mapmaking agency, the primary source of data on the Nation's surface- and ground-water resources, and the employer of the largest number of professional earth scientists. Today's programs serve a diversity of needs and users. Programs include: Conducting detailed assessments of the energy and mineral potential of the Nation's land and offshore areas. Investigating and issuing warnings of earthquakes, volcanic eruptions, landslides, and other geologic and hydrologic hazards. Conducting research on the geologic structure of the Nation. Studying the geologic features, structure, processes, and history of the other planets of our solar system. Conducting topographic surveys of the Nation and preparing topographic and thematic maps and related cartographic products. Developing and producing digital cartographic data bases and products. Collecting data on a routine basis to determine the quantity, quality, and use of surface and ground water. Conducting water-resources appraisals in order to describe the consequences of alternative plans for developing land and water resources. Conducting research in hydraulics and hydrology and coordinating all Federal water-data acquisition. Using remotely sensed data to develop new cartographic, geologic, and hydrologic research techniques for natural resources planning and management. Providing earth-science information through an extensive publications program and a network of public access points. Along with its continuing commitment to meet the growing and changing earthscience information needs of the Nation, the USGS remains dedicated to its original mission to collect, analyze, interpret, publish, and disseminate information about the natural resources of the Nation providing "earth science in the public service."

Open-File Report↗

Land area change in coastal Louisiana: A multidecadal perspective (from 1956 to 2006)

The U.S. Geological Survey (USGS) analyzed changes in the configuration of land and water in coastal Louisiana by using a sequential series of 14 data sets summarizing land and water areas from 1956 to 2006. The purpose of this study is to provide a spatially and temporally consistent source of quantitative information on land area across coastal Louisiana, broken into three physiographic provinces (the term 'coastal Louisiana' is used to present data on the collective area). The land-water data sets used in this study are interpreted through spatial analysis and by linear regression analysis. The spatial depictions of land area change reveal a complex and interwoven mosaic of loss and gain patterns caused by natural and human-induced processes operating at varied temporal and spatial scales, resulting in fluctuating contributions to coastal loss. The linear regression analysis provides a robust estimate of recent change trends by comparing land area over time for all data sets from 1985 to 2004 and from 1985 to 2006 by physiographic province across coastal Louisiana. The 1956 to 2006 map showing multidecadal changes, along with the linear regressions of land area change presented in this study, provide a comprehensive and concise presentation of historical trends and rates of land area change in coastal Louisiana. Taking a broad historical view provides an in-depth understanding of land area changes over time. For example, one observation provided by our historical review is that the majority of the widespread, nontransitory land gains depicted on the map over the past 50 years, with the exception of the progradation of the Atchafafalaya River and Wax Lake deltas, are primarily related to sediment placement and landward migration of barrier islands. Another point revealed by our historical approach is that recent land losses caused by hurricanes sometimes commingled with or exacerbated older losses formed during the 1956 to 1978 period. Furthermore, our analyses also show how the immediate impacts of extreme storms can alter the long-term, time-averaged trends of landscape change, thus limiting the range of projections for the future. For this reason, this study does not include trend projections beyond 2015 because of uncertainties related to recovery from the 2005 hurricane season and the potential for other episodic events that could skew future rates of change.

Louisiana↗

Maps of elevation of top of Pierre Shale and surficial deposit thickness with hydraulic properties from borehole geophysics and aquifers tests within and near Ellsworth Air Force Base, South Dakota, 2020–21

The U.S. Geological Survey, in cooperation with the U.S. Air Force Civil Engineer Center, collected borehole geophysical data and completed simple aquifer tests to estimate the thickness and hydraulic properties of surficial deposits. The purpose of data collection was to create generalized contour maps of Pierre Shale elevation and surficial deposit thickness within and near Ellsworth Air Force Base (study area). Natural gamma and electromagnetic induction data were collected to refine or determine surficial deposit thickness at selected wells. Additionally, data from previous geophysical studies and driller logs were compiled and combined with results from natural gamma and electromagnetic induction data to provide a more spatially complete image of the subsurface. Borehole nuclear magnetic resonance (bNMR) data were collected to estimate hydraulic conductivity and water content of surficial deposits overlying Pierre Shale. Simple aquifer tests using water slugs (slug tests) were completed to estimate hydraulic conductivity of surficial deposits, and results were compared to hydraulic conductivity estimates from bNMR data. All data used to construct maps and estimate hydraulic properties are provided in an accompanying U.S. Geological Survey data release (available at https://doi.org/10.5066/P9FLR79F ). Generalized contour maps were constructed using results from 26 borehole geophysical logs, 35 geophysical transects from previous studies, and 304 wells with driller logs. Pierre Shale elevation generally followed land-surface topography, sloping from high elevations in the north to lower elevations in the south. Topographic highs of Pierre Shale, where present, could act as groundwater divides that potentially affect groundwater flow direction. Surficial deposit thickness varied spatially and ranged from 0 to 86 feet. Surficial deposits generally were thickest in higher elevation areas near ephemeral streams in the northern part of the study area. Hydraulic conductivity estimated from bNMR results using two analytical methods ranged from 0.1 to 2,314 feet per day, whereas hydraulic conductivity estimated from slug tests ranged from 0.001 to 193 feet per day. Hydraulic conductivity estimates from slug tests were plotted with surficial deposit thickness contours instead of bNMR estimates because bNMR estimates were determined to overestimate hydraulic conductivity. Hydraulic conductivity values generally were greater in the southwestern part of study area than the northeastern part.

South Dakota↗

Water resources of Sweetwater County, Wyoming

Sweetwater County is located in the southwestern part of Wyoming and is the largest county in the State. A study to quantify the availability and describe the chemical quality of surface-water and ground-water resources in Sweetwater County was conducted by the U.S. Geological Survey in cooperation with the Wyoming State Engineer’s Office. Most of the county has an arid climate. For this reason a large amount of the flow in perennial streams within the county is derived from outside the county. Likewise, much of the ground-water recharge to aquifers within the county is from flows into the county, and occurs slowly. Surface-water data were not collected as part of the study. Evaluations of streamflow and stream-water quality were limited to analyses of historical data and descriptions of previous investigations. Forty-six new ground-water-quality samples were collected as part of the study and the results from an additional 782 historical ground-water-quality samples were reviewed. Available hydrogeologic characteristics for various aquifers throughout the county also are described. Flow characteristics of streams in Sweetwater County vary substantially depending on regional and local basin characteristics and anthropogenic factors. Because precipitation amounts in the county are small, most streams in the county are ephemeral, flowing only as a result of regional or local rainfall or snowmelt runoff. Flows in perennial streams in the county generally are a result of snowmelt runoff in the mountainous headwater areas to the north, west, and south of the county. Flow characteristics of most perennial streams are altered substantially by diversions and regulation. Water-quality characteristics of selected streams in and near Sweetwater County during water years 1974 through 1983 were variable. Concentrations of dissolved constituents, suspended sediment, and bacteria generally were smallest at sites on the Green River because of resistant geologic units, increased vegetative cover, large diluting streamflows, and large reservoirs. Concentrations of dissolved constituents, suspended sediment, and bacteria generally were largest at sites in the Big Sandy River and Bitter Creek Basins. Some nutrient concentrations and bacteria counts exceeded various State and Federal water-quality criteria. Historical and recent anthropogenic activities contributed to natural sources of many dissolved constituents and suspended sediment. Both water-table and artesian conditions occur in aquifers within the county. Shallow ground water is available throughout the county, although much of it is only marginally suitable or is unsuitable for domestic and irrigation uses mainly because of high total dissolved solids (TDS) concentrations. Suitable ground water for livestock use can be found in most areas of the county. Ground-water quality tends to deteriorate with increasing distance from recharge areas and with increasing depth below land surface. Ground water from depths of greater than a few thousand feet tends to have TDS concentrations that make it moderately saline to briny. In some areas even shallow ground water has moderately saline TDS concentrations. Specific constituents in parts of some aquifers in the county occur in relatively high concentrations when compared to U.S. Environmental Protection Agency drinking-water standards. Relatively high concentrations of sulfate, fluoride, boron, iron, and manganese were found in several aquifers. Many ground-water samples from the Battle Spring aquifer in the Great Divide Structural Basin had high radionuclide concentrations. The estimated mean daily water use in Sweetwater County in 2000 was 170.73 million gallons per day. Irrigation was the largest single use of water in the county with an estimated mean use of more than 92 million gallons per day. Surface water irrigation accounted for nearly 90 percent of the total irrigation water used in 2000. Although ground water is used to a much lesser extent than surface water, in many areas of the county it is the only source of water available.

Wyoming↗

Relations between well-field pumping and induced canal leakage in east-central Miami-Dade County, Florida, 2010-2011

An extensive canal and water management system exists in south Florida to prevent flooding, replenish groundwater, and impede saltwater intrusion. The unconfined Biscayne aquifer, which underlies southeast Florida and provides water for millions of residents, interacts with the canal system. The Biscayne aquifer is composed of a highly transmissive karst limestone; therefore, canal stage and flow may be affected by production well pumping, especially in locations where production wells and canals are in proximity. The U.S. Geological Survey developed a local-scale, transient, numerical groundwater flow model of a well field in Miami-Dade County to (1) quantify relations between well-field pumping and C-2 Canal (herein referred to as the Snapper Creek Canal) leakage, (2) determine primary controls on canal leakage variability, and (3) summarize results that could simplify characterization of canal/well-field interactions in other locations. In addition to the groundwater model development, stable isotope data from water-quality samples were used to characterize the relations between production well pumping and canal leakage. The results from the groundwater model and the isotope data were used to refine the conceptual flow model of the study area. The groundwater flow model MODFLOW-NWT was used for simulating groundwater flow and quantifying interactions between pumping from the well field and Snapper Creek Canal leakage. Input data for the groundwater model included precipitation, evapotranspiration, pumping, canal stage, and regional groundwater elevation. The inverse modeling tool UCODE and groundwater data from June 2010 to July 2011 were used to calibrate the model. Parameter sensitivity analyses were performed with UCODE. Model sensitivities to geologic heterogeneity, non-laminar flow, and changes in the regional flow boundary were evaluated. The groundwater model generally fits the calibration criteria well within estimated error ranges for groundwater elevations and canal leakage values. The mean average error for heads simulated with the model was 0.19 meter, and head residuals were generally randomly distributed. The model simulated groundwater flow under ambient conditions without production well pumping to establish background leakage. Groundwater flow also was simulated with production well pumping to estimate induced leakage from the Snapper Creek Canal that occurs in response to pumping. Canal leakage was quantified as a percentage of total canal leakage. The percentage of leakage during pumping increased non-linearly with pumping rate, indicating a decreasing sensitivity of canal leakage to pumping at relatively large pumping magnitudes. The results for Snapper Creek Canal may serve as an upper limit for well-field interaction with surface-water features in Miami-Dade County, given the proximity (about 50 meters) of the pumping wells in this study to the Snapper Creek Canal. The isotopic compositions of hydrogen (H) and oxygen (O) in groundwater samples were used to distinguish sources for groundwater within the study area and to assess the extent of natural mixing and pumping-induced mixing with water in the Snapper Creek Canal. Water-level data and water-quality samples were collected from monitoring well clusters, production wells, and the Snapper Creek Canal during discrete sampling events under ambient and pumping conditions. Trends in the isotope data generally follow the regional west-to-east hydraulic gradient across the study area. Data collected within the monitoring-well clusters in closest proximity to the canal indicate that groundwater/surface-water interactions are greatest within the shallow flow zone of the aquifer, especially during pumping conditions. The isotopic composition of samples collected within the study area indicates that the shallow, highly transmissive preferential flow zone receives substantial recharge from the canal. The isotope data from the production wells which are open to the deeper flow zone within the aquifer, indicate only traces of mixing with a 2 H- and 18 O-enriched source, suggesting little canal admixture with waters of the deeper flow zone. Results from the groundwater model and the stable isotope data analysis indicate the importance of considering geologic heterogeneity when investigating the relations between pumping and canal leakage, not only at this site, but also at other sites with similar heterogeneous geology. The model results were consistently sensitive to the hydrogeologic framework and changes in hydraulic conductivities. The model and the isotope data indicate that the majority of the groundwater/surface-water interactions occurred within the shallow flow zone. A relatively lower-permeability geologic layer occurring between the shallowest and deep preferential flow zones lessens the interactions between the production wells and the canal.

Florida↗

Decision analysis to support development of the Glen Canyon Dam long-term experimental and management plan

The U.S. Geological Survey, in cooperation with the Bureau of Reclamation, National Park Service, and Argonne National Laboratory, completed a decision analysis to use in the evaluation of alternatives in the Environmental Impact Statement concerning the long-term management of water releases from Glen Canyon Dam and associated management activities. Two primary decision analysis methods, multicriteria decision analysis and the expected value of information, were used to evaluate the alternative strategies against the resource goals and to evaluate the influence of uncertainty. A total of 18 performance metrics associated with 8 out of 12 resource goals (fundamental objectives) were developed by the Bureau of Reclamation and National Park Service in partnership with subject-matter teams composed of Federal, State, tribal, and private experts. A total of 19 long-term strategies associated with 7 alternatives were developed by the Bureau of Reclamation, National Park Service, Argonne National Laboratory, U.S. Geological Survey, and Cooperating Agencies. The 19 long-term strategies were evaluated against the 18 performance metrics using a series of coupled simulation models, taking into account the effects of several important sources of uncertainty. A total of 27 Federal, State, tribal, and nongovernmental agencies were invited by the Assistant Secretary of Interior to participate in a swing-weighting exercise to understand the range of perspectives about how to place relative value on the resource goals and performance metrics; 14 of the 27 chose to participate. The results of the swing-weighting exercise were combined with the evaluation of the alternatives to complete a multicriteria decision analysis. The effects of uncertainty on the ranking of long-term strategies were evaluated through calculation of the value of information. The alternatives and their long-term strategies differed across performance metrics, producing unavoidable tradeoffs; thus, there was no long-term strategy that was dominated by another across all performance metrics. When the performance of each alternative was weighted across performance metrics, three alternatives (B, D, and G) were top-ranked depending on the set of weights proposed: Alternative B was favored by those stakeholders that placed a high value on hydropower; Alternative G was favored by those stakeholders that placed a high value on the restoration of natural processes, like beachbuilding and natural vegetation; and Alternative D was favored by the remaining stakeholders. Surprisingly, these rankings were not sensitive to the critical uncertainties that were evaluated; that is, the choice of a preferred long-term strategy was sensitive to the value-based judgment about how to place relative weight on the resource goals but was not sensitive to the uncertainties in the system dynamics that were evaluated in this analysis. The one area of uncertainty that did slightly affect the ranking of alternatives was the long-term pattern of hydrological input; because of this sensitivity, some attention to the possible effects of climate change is warranted. The results of the decision analysis are meant to serve as only one of many sources of information that can be used to evaluate the alternatives proposed in the Environmental Impact Statement. These results only focus on those resource goals for which quantitative performance metrics could be formulated and evaluated; there are other important aspects of the resource goals that also need to be considered. Not all the stakeholders who were invited to participate in the decision analysis chose to do so; thus, the Bureau of Reclamation, National Park Service, and U.S. Department of Interior may want to consider other input.

Arizona↗

Sediment transport, terrace incision, and sediment chemistry in subbasins of differing land use, Stinking Water Creek Basin near Rangely, Colorado

In many areas of western Colorado, Late Cretaceous Mancos Shale is a source of sediment, salinity, and selenium to surface water. Natural weathering processes and human activity can expose and move sediments from the Mancos Shale, leading to increased salinity and selenium concentrations in surface water. The U.S. Geological Survey, in cooperation with the Bureau of Land Management, studied four subbasins of Stinking Water Creek near Rangely, Colorado, to provide information regarding landscapes on Mancos Shale that have undergone land-use change. Rangeland grazing is present in all four subbasins. Subbasins A1 and A2 have land use related to energy development and subbasins B1 and B2 do not. Aerial photographs, sediment chemistry, optically stimulated luminescence (OSL) ages, cross-section surveys, and Watershed Erosion Prediction Project (WEPP) modeling were used to characterize the history of land-use change by estimating stream channel incision rates and sediment, salinity, and selenium loads. All subbasins had upper and lower terraces and a modern streambed channel, and these surfaces were dated using OSL. In subbasins A1, A2, and B1, the streambed age was older than the terraces, indicating the channels are incising and widening into the older alluvium. In subbasin B2, however, the streambed age was much younger than the terraces, indicating aggradation is the main process. Differences in channel morphology were not always related to land use but to the subbasin position (upstream compared to downstream). Channels in subbasins A1 and A2 were generally wider and shallower than channels in subbasins B1 and B2. Landscape disturbances related to energy development in subbasins A1 and A2 could have caused channel evolution to progress from incision to widening processes.

Colorado↗

Determination of channel-morphology characteristics, bankfull discharge, and various design-peak discharges in western Montana

Stream-restoration projects using natural stream designs typically are based on channel configurations that can accommodate a wide range of streamflow and sediment-transport conditions without excessive erosion or deposition. Bankfull discharge is an index of streamflow considered to be closely related to channel shape, size, and slope (channel morphology). Because of the need for more information about the relation between channel morphology and bankfull discharge, the U.S. Geological Survey (USGS), in cooperation with the Montana Department of Transportation and the U.S. Department of Agriculture-Lolo National Forest, conducted a study to collect channel-morphology and bankfull-discharge data at gaged sites and use these data to improve current (2004) methods of estimation of bankfull discharge and various design-peak discharges at ungaged sites. This report presents channel-morphology characteristics, bankfull discharge, and various design-peak discharges for 41 sites in western Montana. Channel shape, size, and slope and bankfull discharge were determined at 41 active or discontinued USGS streamflow-gaging sites in western Montana. The recurrence interval for the bankfull discharge for this study ranged from 1.0 to 4.4 years with a median value of 1.5 years. The relations between channel-morphology characteristics and various design-peak discharges were examined using regression analysis. The analyses showed that the only characteristics that were significant for all peak discharges were either bankfull width or bankfull cross-sectional area. Bankfull discharge at ungaged sites in most of the study area can be estimated by application of a multiplier after determining the 2-year peak discharge at the ungaged site. The multiplier, which is the ratio of bankfull discharge to the 2-year peak discharge determined at the 41 sites, ranged from 0.21 to 3.7 with a median value of 0.84. Regression relations between bankfull discharge and drainage area and between bankfull width and drainage area were examined for three ranges of mean annual precipitation. The results of the regression analyses indicated that both drainage area and mean annual precipitation were significantly related (p values less than 0.05) to bankfull discharge.

Scientific Investigations Report↗

Submarine ground-water discharge and fate along the coast of Kaloko-Honokohau National Historical Park, Island of Hawai'i: Part 2, spatial and temporal variations in salinity, radium-isotope activity, and nutrient concentrations in coastal waters, December 2003 - April 2006

The aquatic resources of Kaloko-Honokohau National Historical Park, including rocky shoreline, fishponds, and anchialine pools, provide habitat to numerous plant and animal species and offer recreational opportunities to local residents and tourists. A considerable amount of submarine groundwater discharge was known to occur in the park, and this discharge was suspected to influence the park's water quality. Thus, the goal of this study was to characterize spatial and temporal variations in the quality and quantity of groundwater discharge in the park. Samples were collected in December 2003, November 2005, and April 2006 from the coastal ocean, beach pits, three park observation wells, anchialine pools, fishponds, and Honokohau Harbor. The activities of two Ra isotopes commonly used as natural ground-water tracers (223Ra and 224Ra), salinity, and nutrient concentrations were measured. Fresh ground water composed a significant proportion (8-47 volume percent) of coastal-ocean water. This percentage varied widely between study sites, indicating significant spatial variation in submarine groundwater discharge at small (meter to kilometer) scales. Nitrate + nitrite, phosphate, and silica concentrations were significantly higher in nearshore coastal-ocean samples relative to samples collected 1 km or more offshore, and linear regression showed that most of this difference was due to fresh ground-water discharge. High-Ra-isotope-activity, higher-salinity springs were a secondary source of nutrients, particularly phosphate, at Honokohau Harbor and Aiopio Fishtrap. Salinity, Ra-isotope activity, and nutrient concentrations appeared to vary in response to the daily tidal cycle, although little seasonal variation was observed, indicating that submarine ground-water discharge may buffer the park's water quality against the severe seasonal changes that would occur in a system where freshwater inputs were dominated by rivers and runoff. Ra-isotope-activity ratios indicated that the residence time of water in the coastal ocean at the study sites was less than 1.6 days. We calculated water and nutrient fluxes into the coastal ocean at each study site. This study provides a baseline description of submarine ground-water discharge in Kaloko-Honokohau National Historical Park and its effect on the park's aquatic resources. We hope that it will allow park managers to better assess potential future changes in ground-water quality and quantity and conserve the park's valuable resources.

Hawaii↗

Potential effects of roadside dry wells on groundwater quality on the Island of Hawai'i — Assessment using numerical groundwater models

Widespread use of dry wells to dispose of roadside runoff has raised concern about the potential effects on the quality of groundwater on the Island of Hawai‘i. This study used semi-generic numerical models of groundwater flow and contaminant transport to assess the potential effect of dry wells on groundwater quality on the Island of Hawai‘i. The semi-generic models are generalized numerical groundwater-flow and solute-transport models that have a range of aquifer properties and regional groundwater gradients that are characteristic for the island. Several semi-generic models were created to study the effect of dry wells in different hydrogeologic conditions, such as different unsaturated-zone thicknesses or different aquifer characteristics. Results indicate that mixing of contaminated water from the surface with contaminant-free water in the saturated aquifer immediately reduces the contaminant concentration. The amount the concentration is reduced depends on the hydraulic properties of the aquifer in a given area, the thickness of the unsaturated zone, and whether the infiltration is focused in a small area of a dry well or spread naturally over a larger area. Model simulations indicate that focusing infiltration of contaminated runoff through a dry well can substantially increase contaminant concentrations in the underlying saturated aquifer relative to infiltration under natural conditions. Simulated concentrations directly beneath a dry well were nearly 8 times higher than the simulated concentrations directly beneath a broad infiltration area representing the natural condition. Where dry wells are present, contaminant concentrations in the underlying saturated aquifer are lower when the unsaturated zone is thicker and higher when the unsaturated zone is thinner. Contaminant concentrations decline quickly as the contaminant plume migrates, with the regional groundwater flow, away from the dry well. The differences among concentrations resulting from the various unsaturated-zone thicknesses also diminish with distance from the dry well. At a horizontal distance of about 700 ft downgradient from the dry well, all simulated maximum concentrations were less than 1 percent of the concentration in the infiltration water; at about 0.5 mi downgradient from the dry well, all simulated concentrations were equal to or less than 0.1 percent. Actual concentrations may be even lower than indicated by the models because of processes such as decay and reaction that were not simulated. Hydrologic and geologic differences from one location to the next also affect contaminant concentrations—simulations using models with properties representative of aquifers in the Hilo area resulted in lower overall concentrations than models with properties representative of aquifers in the Kona area. Results from this study can be used to assess how contaminants entering a dry well may affect receiving waters in a variety of situations on the Island of Hawai‘i. Better assessment would be obtained by using results from models having the most similar conditions (such as climate, hydraulic properties, regional groundwater gradient) to the dry well in question. The results of this study can help determine which dry wells are likely to have the greatest effect on nearby receiving waters and where more specific data and analyses may be needed.

Hawaii↗

Sensitivity of benthic biota and toxicity of cadmium, cobalt, copper, nickel, lead, and zinc mixtures in Washington, United States, and British Columbia, Canada

Relative sensitivities and responses of juvenile white sturgeon ( Acipenser transmontanus ), Hyalella azteca , two families of mayfly (Ephemerellidae, Heptageniidae), one family of caddisfly (Brachycentridae), and a natural community of benthic macroinvertebrates (BMI) to multiple metals are predicted using previously collected laboratory and field samples and a metal mixture model. Biological responses in single metal exposures are used to parameterize toxicity functions, which include accumulations of hydrogen and selected metals on biological receptors, intrinsic potencies of hydrogen and metals, sensitivities of organisms, and times of exposure. The model then is used to predict responses in multiple metal laboratory exposures and field-collected porewater. The following sensitivity sequence in porewater was determined based on endpoints of survival or total abundance: juvenile white sturgeon greater than (>) Ephemerellidae family > Hyalella azteca > Heptageniidae family about equal to (~) benthic macroinvertebrate community > Brachycentridae family. The fraction of porewater samples that are predicted to have adverse impacts on benthic biota (20-percent or greater negative response) depends on organism sensitivities and metal toxicities, and ranges from 44 to 48 percent for juvenile white sturgeon, 23 to 26 percent for the Ephemerellidae family, 16 to 22 percent for Hyalella azteca , 5 to 8 percent for the Heptageniidae family and BMI community, and 0 percent for the caddisfly family. The most toxic porewater in the upper Columbia River Basin (UCR) is at the backwater bar site at Deadmans Eddy and China Bend. The model also indicates that the element responsible for the most toxic conditions in UCR porewater is copper for all organisms, except Hyalella azteca and the metal-insensitive Brachycentridae family. Copper and lead result in the most toxic conditions for Hyalella azteca . This approach and results can aid in assessing metal toxicity and its potential risk to aquatic biota in ecosystems impacted by historical mining activities.

British Columbia, Washington↗

Flood-inundation maps for 14.8 miles of Little and Big Papillion Creeks in Omaha, Nebraska, 2023

Digital flood-inundation map libraries for two reaches that constitute 14.8 miles of Little and Big Papillion Creeks in Omaha, Nebraska, were created by the U.S. Geological Survey (USGS) in cooperation with the Papio-Missouri River Natural Resource District. The flood-inundation maps, which can be accessed through the USGS Flood Inundation Mapping Program website at https://www.usgs.gov/mission-areas/water-resources/science/flood-inundation-mapping-fim-program , depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at Little Papillion Creek at Irvington, Nebr. (USGS station 06610750), Little Papillion Creek at Ak-Sar-Ben at Omaha, Nebr. (USGS station 06610765), and Big Papillion Creek at Q Street at Omaha, Nebr. (USGS station 06610770) streamgages. Near-real-time stages at these streamgages may be obtained from the USGS National Water Information System database at https://doi.org/10.5066/F7P55KJN or from the National Weather Service Advanced Hydrologic Prediction Service at https://water.weather.gov/ahps/ . Flood profiles were computed for two different reaches that constitute 14.8 miles of stream length in the study area by using hydraulic models. The models were calibrated by adjusting roughness coefficients to best represent the current (2022) stage-streamflow relation at the streamgages within the study reach. The hydraulic models were then used to compute water-surface profiles at 1-foot stage intervals for selected stage ranges to represent various flooding scenarios at the streamgages in each reach. The simulated water-surface profiles then were combined with a digital elevation model using a geographic information system, which had a 10-foot grid spacing to delineate the flooding extents and water depths for each stage. The availability of these flood-inundation maps, along with information regarding current stage from the USGS streamgages, can provide emergency management personnel and residents with information that is critical for flood response activities and post flood recovery efforts.

Nebraska↗

Spatially explicit habitat models for 28 fishes from the Upper Mississippi River System (AHAG 2.0)

Environmental management actions in the Upper Mississippi River System (UMRS) typically require pre-project assessments of predicted benefits under a range of project scenarios. The U.S. Army Corps of Engineers (USACE) now requires certified and peer-reviewed models to conduct these assessments. Previously, habitat benefits were estimated for fish communities in the UMRS using the Aquatic Habitat Appraisal Guide (AHAG v.1.0; AHAG from hereon). This spreadsheet-based model used a habitat suitability index (HSI) approach that drew heavily upon Habitat Evaluation Procedures (HEP; U.S. Fish and Wildlife Service, 1980) by the U.S. Fish and Wildlife Service (USFWS). The HSI approach requires developing species response curves for different environmental variables that seek to broadly represent habitat. The AHAG model uses species-specific response curves assembled from literature values, data from other ecosystems, or best professional judgment. A recent scientific review of the AHAG indicated that the model’s effectiveness is reduced by its dated approach to large river ecosystems, uncertainty regarding its data inputs and rationale for habitat-species response relationships, and lack of field validation (Abt Associates Inc., 2011). The reviewers made two major recommendations: (1) incorporate empirical data from the UMRS into defining the empirical response curves, and (2) conduct post-project biological evaluations to test pre-project benefits estimated by AHAG. Our objective was to address the first recommendation and generate updated response curves for AHAG using data from the Upper Mississippi River Restoration-Environmental Management Program (UMRR-EMP) Long Term Resource Monitoring Program (LTRMP) element. Fish community data have been collected by LTRMP (Gutreuter and others, 1995; Ratcliff and others, in press) for 20 years from 6 study reaches representing 1,930 kilometers of river and >140 species of fish. We modeled a subset of these data (28 different species; occurrences at sampling sites as observed in day electrofishing samples) using multiple logistic regression with presence/absence responses. Each species’ probability of occurrence, at each sample site, was modeled as a function of 17 environmental variables observed at each sample site by LTRMP standardized protocols. The modeling methods used (1) a forward-selection process to identify the most important predictors and their relative contributions to predictions; (2) partial methods on the predictor set to control variance inflation; and (3) diagnostics for LTRMP design elements that may influence model fits. Models were fit for 28 species, representing 3 habitat guilds (Lentic, Lotic, and Generalist). We intended to develop “systemic models” using data from all six LTRMP study reaches simultaneously; however, this proved impossible. Thus, we “regionalized” the models, creating two models for each species: “Upper Reach” models, using data from Pools 4, 8, and 13; and “Lower Reach” models, using data from Pool 26, the Open River Reach of the Mississippi River, and the La Grange reach of the Illinois River. A total of 56 models were attempted. For any given site-scale prediction, each model used data from the three LTRMP study reaches comprising the regional model to make predictions. For example, a site-scale prediction in Pool 8 was made using data from Pools 4, 8, and 13. This is the fundamental nature and trade-off of regionalizing these models for broad management application. Model fits were deemed “certifiably good” using the Hosmer and Lemeshow Goodness-of-Fit statistic (Hosmer and Lemeshow, 2000). This test post-partitions model predictions into 10 groups and conducts inferential tests on correspondences between observed and expected probability of occurrence across all partitions, under Chi-square distributional assumptions. This permits an inferential test of how well the models fit and a tool for reporting when they did not (and perhaps why). Our goal was to develop regionalized models, and to assess and describe circumstances when a good fit was not possible. Seven fish species composed the Lentic guild. Good fits were achieved for six Upper Reach models. In the Lower Reach, no model produced good fits for the Lentic guild. This was due to (1) lentic species being much less prominent in the Lower Reach study areas, and (2) those that do express greater prominence principally do so only in the La Grange reach of the Illinois River. Thus, developing Lower Reach models for Lentic species will require parsing La Grange from the other two Lower Reach study areas and fitting separate models. We did not do that as part of this study, but it could be done at a later time. Nine species comprised the Lotic guild. Good fits were achieved for seven Upper Reach models and six Lower Reach models. Four species had good fits for both regions (flathead catfish, blue sucker, sauger, and shorthead redhorse). Three species showed zoogeographic zonation, with a good model fit in one of the regions, but not in the region in which they were absent or rarely occurred (blue catfish, rock bass, and skipjack herring). Twelve species comprised the Generalist guild. Good fits were achieved for five Upper Reach models and eight Lower Reach models. Six species had good fits for both regions (brook silverside, emerald shiner, freshwater drum, logperch, longnose gar, and white bass). Two species showed zoogeographic zonation, with a good model fit in one of the regions, but not in the region in which they were absent or rarely occurred (red shiner and blackstripe topminnow). Poorly fit models were almost always due to the diagnostic variable “field station,” a surrogate for river mile. In these circumstances, the residuals for “field station” were non-randomly distributed and often strongly ordered. This indicates either fitting “pool scale” models for these species and regions, or explicitly model covariances between “field station” and the other predictors within the existing modeling framework. Further efforts on these models should seek to resolve these issues using one of these two approaches. In total, nine species, representing two of the three guilds (Lotic and Generalist), produced well-fit models for both regions. These nine species should comprise the basis for AHAG 2.0. Additional work, likely requiring downscaling of the regional models to pool-scale models, will be needed to incorporate additional species. Alternately, a regionalized AHAG could be comprised of those species, per region, that achieved well-fit models. The number of species and the composition of the regional species pools will differ among regions as a consequence. Each of these alternatives has both pros and cons, and managers are encouraged to consider them fully before further advancing this approach to modeling multi-species habitat suitability.

Upper Mississippi River System↗

The United States National Climate Assessment - Alaska Technical Regional Report

The Alaskan landscape is changing, both in terms of effects of human activities as a consequence of increased population, social and economic development and their effects on the local and broad landscape; and those effects that accompany naturally occurring hazards such as volcanic eruptions, earthquakes, and tsunamis. Some of the most prevalent changes, however, are those resulting from a changing climate, with both near term and potential upcoming effects expected to continue into the future. Alaska's average annual statewide temperatures have increased by nearly 4°F from 1949 to 2005, with significant spatial variability due to the large latitudinal and longitudinal expanse of the State. Increases in mean annual temperature have been greatest in the interior region, and smallest in the State's southwest coastal regions. In general, however, trends point toward increases in both minimum temperatures, and in fewer extreme cold days. Trends in precipitation are somewhat similar to those in temperature, but with more variability. On the whole, Alaska saw a 10-percent increase in precipitation from 1949 to 2005, with the greatest increases recorded in winter. The National Climate Assessment has designated two well-established scenarios developed by the Intergovernmental Panel on Climate Change (Nakicenovic and others, 2001) as a minimum set that technical and author teams considered as context in preparing portions of this assessment. These two scenarios are referred to as the Special Report on Emissions Scenarios A2 and B1 scenarios, which assume either a continuation of recent trends in fossil fuel use (A2) or a vigorous global effort to reduce fossil fuel use (B1). Temperature increases from 4 to 22°F are predicted (to 2070-2099) depending on which emissions scenario (A2 or B1) is used with the least warming in southeast Alaska and the greatest in the northwest. Concomitant with temperature changes, by the end of the 21st century the growing season is expected to lengthen by 15-25 days in some areas of Alaska, with much of that corresponding with earlier spring snow melt. Future projections of precipitation (30-80 years) over Alaska show an increase across the State, with the largest changes in the northwest and smallest in the southeast. Because of increasing temperatures and growing season length, however, increased precipitation may not correspond with increased water availability, due to temperature related increased evapotranspiration. The extent of snow cover in the Northern Hemisphere has decreased by about 10 percent since the late 1960s, with stronger trends noted since the late 1980s. Alaska has experienced similar trends, with a strong decrease in snow cover extent occurring in May. When averaged across the State, the disappearance of snow in the spring has occurred from 4 to 6 days earlier per decade, and snow return in fall has occurred approximately 2 days later per decade. This change appears to be driven by climate warming rather than a decrease in winter precipitation, with average winter temperatures also increasing by about 2.5°F. The extent of sea ice has been declining, as has been widely published in both national and scientific media outlets, and is projected to continue to decline during this century. The observed decline in annual sea ice minimum extent (September) has occurred more rapidly than was predicted by climate models and has been accompanied by decreases in ice thickness and in the presence of multi-year ice. This decrease was first documented by satellite imagery in the late 1970s for the Bering and Chukchi Seas, and is projected to continue, with the potential for the disappearance of summer sea ice by mid- to late century. A new phenomenon that was not reported in previous assessments is ocean acidification. Uptake of carbon dioxide (CO2) by oceans has a significant effect on marine biogeochemistry by reducing seawater pH. Ocean acidification is of particular concern in Alaska, because cold sea water absorbs CO2 more rapidly than warm water, and a decrease in sea ice extent has allowed increased sea surface exposure and more uptake of CO2 into these northern waters. Ocean acidification will likely affect the ability of organisms to produce and maintain shell material, such as aragonite or calcite (calcium carbonate minerals structured from carbonate ions), required by many shelled organism, from mollusks to corals to microscopic organisms at the base of the food chain. Direct biological effects in Alaska further along the food chain have yet to be studied and may vary among organisms. Some of the potentially most significant changes to Alaska that could result from a changing climate are the effects on the terrestrial cryosphere - particularly glaciers and permafrost. Alaskan glaciers are changing at a rapid rate, the primary driver appearing to be temperature. Statewide, glaciers lost 13 cubic miles of ice annually from the 1950s to the 1990s, and that rate doubled in the 2000s. However, like temperature and precipitation, glacier ice loss is not spatially uniform; most glaciers are losing mass, yet some are growing (for example Hubbard Glacier in southeast Alaska). Alaska glaciers with the most rapid loss are those terminating in sea water or lakes. With this increasing rate of melt, the contribution of surplus fresh water entering into the oceans from Alaska's glaciers, as well as those in neighboring British Columbia, Canada, is approximately 20 percent of that contributed by the Greenland Ice Sheet. Permafrost degradation (that is, the thawing of ice-rich soils) is currently (2012) impacting infrastructure and surface-water availability in areas of both discontinuous and continuous ground ice. Over most of the State, the permafrost is warming, with increasing temperatures broadly consistent with increasing air temperatures. On the Arctic coastal plain of Alaska, permafrost temperatures showed some cooling in the 1950s and 1960s but have been followed by a roughly 5°F increase since the 1980s. Many areas in the continuous permafrost zone have seen increases in temperature in the seasonally active layer and a decrease in re-freezing rates. Changes in the discontinuous permafrost zone are initially much more observable due to the resulting thermokarst terrain (land surface formed as ice rich permafrost thaws), most notable in boreal forested areas. Climate warming in Alaska has potentially broad implications for human health and food security, especially in rural areas, as well as increased risk for injury with changing winter ice conditions. Additionally, such warming poses the potential for increasing damage to existing water and sanitation facilities and challenges for development of new facilities, especially in areas underlain by permafrost. Non-infectious and infectious diseases also are becoming an increasing concern. For example, from 1999 to 2006 there was a statistically significant increase in medical claims for insectbite reactions in five of six regions of Alaska, with the largest percentage increase occurring in the most northern areas. The availability and quality of subsistence foods, normally considered to be very healthy, may change due to changing access, changing habitats, and spoilage of meat in food storage cellars. These and other trends and potential outcomes resulting from a changing climate are further described in this report. In addition, we describe new science leadership activities that have been initiated to address and provide guidance toward conducting research aimed at making available information for policy makers and land management agencies to better understand, address, and plan for changes to the local and regional environment. This report cites data in both metric and standard units due to the contributions by numerous authors and the direct reference of their data.

Alaska↗