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BRIDGES: Evolution of basic and applied linkages in benthic science

Growing awareness of environmental degradation resulted in stricter environmental regulations and laws for aquatic ecosystems. These regulations were followed by an increase in applied research and monitoring beginning in the early 1970s. The number of applied scientists who were members of the North American Benthological Society grew at a commensurate rate. The editors of J-NABS recognized that, despite these increases, submitted manuscripts mostly addressed basic science. In response, the BRIDGES section of J-NABS was created in 1994 to provide a forum for linking basic ecological principles to applied science problems and issues. We examined the emergence of applied science topics in J-NABS and its predecessor, Freshwater Invertebrate Biology , from their beginning in 1982 to 2009. We classified papers among 11 categories that included a basic/applied science linkage. In the 1980s, applied papers were predominantly on effects of eutrophication/pollution and landuse changes. When BRIDGES was established in 1994, papers were solicited by editors and BRIDGES sections usually included >1 paper on a common theme to express complementary or alternate viewpoints. Forty-two papers appeared in BRIDGES between 1994 and 2009, but the number per issue declined after 2001. The total number of applied science papers in J-NABS has increased since ∼1994. Citation analysis of BRIDGES papers illustrates how information is being cited, but applied papers often are used in ways that might not lead to citations. BRIDGES transitioned to a new format in September 2009 to address new types of complex, multifaceted linkages. All new BRIDGES articles will be open access, and authors will be encouraged to produce lay-language fact sheets and to post them on the web.

Journal of the North American Benthological Societ↗

Cliff swallows Petrochelidon pyrrhonota as bioindicators of environmental mercury, Cache Creek Watershed, California

To evaluate mercury (Hg) and other element exposure in cliff swallows (Petrochelidon pyrrhonota), eggs were collected from 16 sites within the mining-impacted Cache Creek watershed, Colusa, Lake, and Yolo counties, California, USA, in 1997-1998. Nestlings were collected from seven sites in 1998. Geometric mean total Hg (THg) concentrations ranged from 0.013 to 0.208 ??g/g wet weight (ww) in cliff swallow eggs and from 0.047 to 0.347 ??g/g ww in nestlings. Mercury detected in eggs generally followed the spatial distribution of Hg in the watershed based on proximity to both anthropogenic and natural sources. Mean Hg concentrations in samples of eggs and nestlings collected from sites near Hg sources were up to five and seven times higher, respectively, than in samples from reference sites within the watershed. Concentrations of other detected elements, including aluminum, beryllium, boron, calcium, manganese, strontium, and vanadium, were more frequently elevated at sites near Hg sources. Overall, Hg concentrations in eggs from Cache Creek were lower than those reported in eggs of tree swallows (Tachycineta bicolor) from highly contaminated locations in North America. Total Hg concentrations were lower in all Cache Creek egg samples than adverse effects levels established for other species. Total Hg concentrations in bullfrogs (Rana catesbeiana) and foothill yellow-legged frogs (Rana boylii) collected from 10 of the study sites were both positively correlated with THg concentrations in cliff swallow eggs. Our data suggest that cliff swallows are reliable bioindicators of environmental Hg. ?? Springer Science+Business Media, LLC 2007.

Archives of Environmental Contamination and Toxico↗

When do climate services achieve societal impact? Evaluations of actionable climate adaptation science

To cope with complex environmental impacts in a changing climate, researchers are increasingly being asked to produce science that can directly support policy and decision making. To achieve such societal impact, scientists are using climate services to engage directly with stakeholders to better understand their needs and inform knowledge production. However, the wide variety of climate-services outcomes—ranging from establishing collegial relationships with stakeholders to obtaining specific information for inclusion into a pre-existing decision process—do not directly connect to traditional methods of measuring scientific impact (e.g., publication citations, journal impact factor). In this paper, we describe how concepts from the discipline of evaluation can be used to examine the societal impacts of climate services. We also present a case study from climate impacts and adaptation research to test a scalable evaluation approach. Those who conduct research for the purposes of climate services and those who fund applied climate research would benefit from evaluation from the beginning of project development. Doing so will help ensure that the approach, data collection, and data analysis are appropriately conceived and executed.

Sustainability↗

Environmental flow studies of the Fort Collins Science Center— Cherry Creek, Arizona

At the request of the U.S. Forest Service, an instream flow assessment was conducted at Cherry Creek, Ariz., to investigate habitat for native and introduced fish species and to describe the beneficial use of a possible instream flow water right. The U.S. Geological Survey (USGS) Fort Collins Science Center performed an intensive field study of two sections of Cherry Creek in September 2008 to provide base data for hydrodynamic simulation of the flow conditions in the stream. The USGS Arizona Cooperative Fish and Wildlife Research Unit, at the University of Arizona School of Natural Resources, conducted a survey of the habitat requirements of the resident fish species in Cherry Creek and provided the habitat suitability criteria used in this study. The habitat suitability criteria were combined with hydrodynamic simulation results to quantify fish habitat for the full range of daily flow experienced in the creek and to produce maps of habitat occurrence for those flows. The flow record at the Cherry Creek stream gage was used to generate habitat response values over time. The long-term habitat response was incorporated into an Excel (Registered) spreadsheet to allow evaluation of habitat occurrence with and without an instream water right under different hypothetical water withdrawal scenarios. The spreadsheet displays information about the time sequence of habitat events, the duration of critical events, and habitat retention.

Arizona↗

Helping Students make the transition from novice learner of ground-water concepts to expert using the Plume Busters software

Environmental and earth science students are novice learners and lack the experience needed to rise to the level of expert. To address this problem we have developed the prototype Plume Busters?? software as a capstone educational experience, in which students take on the role of an environmental consultant. Following a pipeline spill, the environmental consultant is hired by the pipeline owner to locate the resulting plume created by spill and remediate the contaminated aquifer at minimum monetary and time cost. The contamination must be removed from the aquifer before it reaches the river and eventually a downstream public water supply. The software consists of an interactive Java application and accompanying HTML linked pages. The application simulates movement of a plume from a pipeline break throug h a shallow alluvial aquifer towards the river. The accompanying web pages establish the simulated contamination scenario and provide students with background material on ground-water flow and transport principles. To make the role-play more realistic, the student must consider cost and time when making decisions about siting observation wells and wells for the pump-and-treat remediation system.

Journal of Geoscience Education↗

Using science-policy integration to improve ecosystem science and inform decision-making: Lessons from U.S. LTERs

This Special Session took place on 12 August 2015 at the 100th Meeting of the Ecological Society of America in Baltimore, Maryland, and was conceived of and coordinated by the Science Policy Exchange. The Science Policy Exchange (SPE) is a boundary- spanning organization established to work at the interface of science and policy to confront pressing environmental challenges . SPE was created as a collaborative of six research institutions to increase the impact of science on environmental decisions. This session was organized by Marissa Weiss and co- organized by Pamela Templer, Kathleen Fallon Lambert, Jill Baron, Charles Driscoll, and David Foster. Along the theme of ESA ’ s Centennial meeting, the group of presenters represented collectively more than 100 years of experience in integration of science, policy, and outreach.

Bulletin of the Ecological Society of America↗

Science for a risky world—A U.S. Geological Survey plan for risk research and applications

Executive Summary Natural hazards—including earthquakes, tsunamis, volcanic eruptions, landslides, hurricanes, droughts, floods, wildfires, geomagnetic storms, and pandemics—can wreak havoc on human communities, the economy, and natural resources for years following an initial event. Hazards can claim lives and cause billions of dollars in damage to homes and infrastructure as well as lost or compromised economic activity and threats to national security. They also can have adverse environmental, social, economic, and health effects that extend well beyond the immediate area, sometimes with global implications. Changes in population growth, climate, and urbanization may exacerbate hazard impacts. Because of the potential severity of a single hazard event, reducing risk—the potential loss of societally important assets caused by these hazards—is a high priority for everyone, including policy makers, community members, emergency managers, resource managers, utility operators, business owners, and planners. These stakeholders demand usable, user-centric information to support decisions for planning a resilient future and for responding to and recovering from unanticipated events in more adaptable and cost-effective ways. Meeting this demand requires maximizing the use of environmental observations; hazards science; and research on communications, social stressors, and human behavior to deliver risk information in forms that are accessible by decision makers and the public alike. To achieve this, scientists and stakeholders must collaborate to match community needs with actionable insights, research, products, and tools, using advances in technology to improve information discovery and delivery.

Circular↗

Integrating airborne remote sensing and field campaigns for ecology and Earth system science

In recent years, the availability of airborne imaging spectroscopy (hyperspectral) data has expanded dramatically. The high spatial and spectral resolution of these data uniquely enable spatially explicit ecological studies including species mapping, assessment of drought mortality and foliar trait distributions. However, we have barely begun to unlock the potential of these data to use direct mapping of vegetation characteristics to infer subsurface properties of the critical zone. To assess their utility for Earth systems research, imaging spectroscopy data acquisitions require integration with large, coincident ground‐based datasets collected by experts in ecology and environmental and Earth science. Without coordinated, well‐planned field campaigns, potential knowledge leveraged from advanced airborne data collections could be lost. Despite the growing importance of this field, documented methods to couple such a wide variety of disciplines remain sparse. We coordinated the first National Ecological Observatory Network Airborne Observation Platform (AOP) survey performed outside of their core sites, which took place in the Upper East River watershed, Colorado. Extensive planning for sample tracking and organization allowed field and flight teams to update the ground‐based sampling strategy daily. This enabled collection of an extensive set of physical samples to support a wide range of ecological, microbiological, biogeochemical and hydrological studies. We present a framework for integrating airborne and field campaigns to obtain high‐quality data for foliar trait prediction and document an archive of coincident physical samples collected to support a systems approach to ecological research in the critical zone. This detailed methodological account provides an example of how a multi‐disciplinary and multi‐institutional team can coordinate to maximize knowledge gained from an airborne survey, an approach that could be extended to other studies. The coordination of imaging spectroscopy surveys with appropriately timed and extensive field surveys, along with high‐quality processing of these data, presents a unique opportunity to reveal new insights into the structure and dynamics of the critical zone. To our knowledge, this level of co‐aligned sampling has never been undertaken in tandem with AOP surveys and subsequent studies utilizing this archive will shed considerable light on the breadth of applications for which imaging spectroscopy data can be leveraged.

Colorado↗

Environmental factors affecting contaminant toxicity in aquatic and terrestrial vertebrates

Physical and natural factors have long been known to influence the toxicity of environmental contaminants to vertebrates. The majority of data that address this topic have been derived from studies on fish, highly inbred laboratory rodents, and man.' The degree to which these factors modify toxicity has principally been elucidated by controlled laboratory experiments. Until recently, the significance of such effects to free-ranging vertebrates Figure 23.1 was frequently overlooked in ecological risk assessments.' Drawing upon controlled experiments and observational science, we overview environmental factors that influence pollutant toxicity in fish and wildlife, and present some perspective on their ecotoxicological significance.

Book chapter↗

Environmental factors affecting contaminant toxicity in aquatic and terrestrial vertebrates

Environmental factors have long been demonstrated to influence the toxicity of pollutants to vertebrates. The vast majority of data has been derived from studies on fish, highly inbred laboratory rodents, and man. 1,2 The magnitude and significance of these factors on toxicity has almost exclusively been elucidated in controlled experiments conducted in a laboratory setting. The significance of such effects to free-ranging vertebrate wildlife is frequently overlooked. Drawing upon controlled experiments and observational science, we overview environmental factors that influence pollutant toxicity in fish and wildlife, and attempt to present some perspective on their ecotoxicological significance.

Book chapter↗

A practical solution: The Anthropocene is a geological event, not a formal epoch

The Anthropocene has yet to be defined in a way that is functional both to the international geological community and to the broader fields of environmental and social sciences. Formally defining the Anthropocene as a chronostratigraphical series and geochronological epoch with a precise global start date would drastically reduce the Anthropocene’s utility across disciplines. Instead, we propose the Anthropocene be defined as a geological event, thereby facilitating a robust geological definition linked with a scholarly framework more useful to and congruent with the many disciplines engaging with human-environment interactions. Unlike formal epochal definitions, geological events can recognize the spatial and temporal heterogeneity and diverse social and environmental processes that interact to produce anthropogenic global environmental changes. Consequently, an Anthropocene Event would incorporate a far broader range of transformative human cultural practices and would be more readily applicable across academic fields than an Anthropocene Epoch, while still enabling a robust stratigraphic characterization.

Episodes↗

What is eDNA method standardization and why do we need it?

The rapid advancement of environmental DNA ( eDNA ) science in the past two decades has inspired a concomitant growth in the development of eDNA sampling and analytical methods. However, these methods are often developed by individual laboratories or institutions, which can isolate protocols within programmes, agencies or regions and prevent the beneficial exchange of data and ideas. Recent efforts to advance national and international coordination have resulted in a groundswell of standardisation efforts, but there is still considerable confusion around the role of formal standards for regulatory or research applications. With this commentary, we hope to provide clarity on the terminology used in standardisation discussions, including the differences between formal standards and best practice guidelines. Additionally, we discuss how eDNA method choice may be informed by environmental management scenarios and review examples of formal eDNA method standards being used to inform management action. The eDNA community now has an opportunity to develop a roadmap for method development to help close standardisation gaps, advance eDNA method adoption and accelerate our ability to monitor biological life at the scales our current environmental challenges demand.

Metabarcoding and Metagenomics↗

From agricultural geology to hydropedology: Forging links within the twenty-first-century geoscience community

Despite historical linkages, the fields of geology and soil science have developed along largely divergent paths in the United States during much of the mid- to late-twentieth century. The shift in recent decades within both disciplines, towards greater emphasis on environmental-quality issues and a systems approach, has created new opportunities for collaboration and cross-training. Because of the importance of the soil as a dynamic interface between the hydrosphere, biosphere, atmosphere and lithosphere, introductory and advanced soil-science classes are now taught in a number of Earth and environmental science departments. The National Research Council's recent report, Basic Research Opportunities in Earth Science, highlights the soil zone as part of the land surface to groundwater 'critical zone' requiring additional investigation. To better prepare geology undergraduates to deal with complex environmental problems, their training should include a fundamental understanding of the nature and properties of soils. Those undergraduate geology students with an interest in this area should be encouraged to view soil science as a viable Earth-science specialty area for graduate study. ?? The Geological Society of London 2006.

Geological Society Special Publication↗

GeoImageNet: A multi-source natural feature benchmark dataset for GeoAI and supervised machine learning

The field of GeoAI or Geospatial Artificial Intelligence has undergone rapid development since 2017. It has been widely applied to address environmental and social science problems, from understanding climate change to tracking the spread of infectious disease. A foundational task in advancing GeoAI research is the creation of open, benchmark datasets to train and evaluate the performance of GeoAI models. While a number of datasets have been published, very few have centered on the natural terrain and its landforms. To bridge this gulf, this paper introduces a first-of-its-kind benchmark dataset, GeoImageNet, which supports natural feature detection in a supervised machine-learning paradigm. A distinctive feature of this dataset is the fusion of multi-source data, including both remote sensing imagery and DEM in depicting spatial objects of interest. This multi-source dataset allows a GeoAI model to extract rich spatio-contextual information to gain stronger confidence in high-precision object detection and recognition. The image dataset is tested with a multi-source GeoAI extension against two well-known object detection models, Faster-RCNN and RetinaNet. The results demonstrate the robustness of the dataset in aiding GeoAI models to achieve convergence and the superiority of multi-source data in yielding much higher prediction accuracy than the commonly used single data source.

GeoInformatica↗

Use of alligator hole abundance and occupancy rate as indicators for restoration of a human-altered wetland

Use of indicator species as a measure of ecosystem conditions is an established science application in environmental management. Because of its role in shaping wetland systems, the American alligator (Alligator mississippiensis) is one of the ecological indicators for wetland restoration in south Florida, USA. We conducted landscape-level aerial surveys of alligator holes in two different habitats in a wetland where anthropogenic modification of surface hydrology has altered the natural system. Alligator holes were scarcer in an area where modified hydrology caused draining and frequent dry-downs compared to another area that maintains a functional wetland system. Lower abundance of alligator holes indicates lack of alligator activities, lower overall species diversity, and lack of dry-season aquatic refugia for other organisms. The occupancy rate of alligator holes was lower than the current restoration target for the Everglades, and was variable by size class with large size-class alligators predominantly occupying alligator holes. This may indicate unequal size-class distribution, different habitat selection by size classes, or possibly a lack of recruitment. Our study provides pre-restoration baseline information about one indicator species for the Everglades. Success of the restoration can be assessed via effective synthesis of information derived by collective research efforts on the entire suite of selected ecological indicators.

Florida↗

OpenCLC: An open-source software tool for similarity assessment of linear hydrographic features

The National Hydrography Dataset (NHD) is a foundational geospatial data source in the United States that enables extensive and diverse environmental research and supports decision-making in numerous contexts. However, the NHD requires regular validation and update given possible inconsistent initial collection and hydrographic changes. Furthermore, systems or tools that use NHD data must manage regular updates that occur within the high-resolution version of the NHD (NHD HR). This research contributes to filling this gap by establishing an open-source software tool named OpenCLC, which automatically identifies matching and mismatching line features between two sets of hydrographic flowlines. Aside from identifying differences among two version of NHD lines, results can be applied to improve the quality of NHD HR content. OpenCLC significantly outperforms the best available commercial off-the-shelf software in computational scalability, and it is made widely available as part of the CyberGIS Toolkit to benefit broad environmental and geospatial science communities.

SoftwareX↗

Chantelle postcard

Chantelle is a hydrologist in the Surface Water Investigation Unit. She received her bachelor of science degree in environmental geology from the University of Kansas.

General Information Product↗