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An overview of historical channel adjustment and selected hydraulic values in the Lower Sabine and Lower Brazos River Basins, Texas and Louisiana

The Sabine and Brazos are alluvial rivers; alluvial rivers are dynamic systems that adjust their geometry in response to changes in streamflow (discharge) and sediment load. In fluvial geomorphology, the term 'channel adjustment' refers to river channel changes in three geometric dimensions: (1) channel slope (profile); (2) the outline or shape, such as meandering or braided, projected on a horizontal plane (planform); and (3) cross-sectional form (shape). The primary objective of the study was to investigate how the channel morphology of these rivers has changed in response to reservoirs and other anthropogenic disturbances that have altered streamflow and sediment load. The results of this study are expected to aid ecological assessments in the lower Sabine River and lower Brazos River Basins for the Texas Instream Flow Program. Starting in the 1920s, several dams have been constructed on the Sabine and Brazos Rivers and their tributaries, and numerous bridges have been built and sometimes replaced multiple times, which have changed the natural flow regime and reduced or altered sediment loads downstream. Changes in channel geometry over time can reduce channel conveyance and thus streamflow, which can have adverse ecological effects. Channel attributes including cross-section form, channel slope, and planform change were evaluated to learn how each river's morphology changed over many years in response to natural and anthropogenic disturbances. Climate has large influence on the hydrologic regimes of the lower Sabine and lower Brazos River Basins. Equally important as climate in controlling the hydrologic regime of the two river systems are numerous reservoirs that regulate downstream flow releases. The hydrologic regimes of the two rivers and their tributaries reflect the combined influences of climate, flow regulation, and drainage area. Historical and contemporary cross-sectional channel geometries at 15 streamflow-gaging stations in the lower Sabine and lower Brazos River Basins were evaluated. An in-depth discussion of results from streamflow-gaging station 08028500 Sabine River near Bon Weir, Tex., is featured here as an example of the analyses that were done at each station.

Fact Sheet↗

An environmental streamflow assessment for the Santiam River basin, Oregon

The Santiam River is a tributary of the Willamette River in northwestern Oregon and drains an area of 1,810 square miles. The U.S. Army Corps of Engineers (USACE) operates four dams in the basin, which are used primarily for flood control, hydropower production, recreation, and water-quality improvement. The Detroit and Big Cliff Dams were constructed in 1953 on the North Santiam River. The Green Peter and Foster Dams were completed in 1967 on the South Santiam River. The impacts of the structures have included a decrease in the frequency and magnitude of floods and an increase in low flows. For three North Santiam River reaches, the median of annual 1-day maximum streamflows decreased 42–50 percent because of regulated streamflow conditions. Likewise, for three reaches in the South Santiam River basin, the median of annual 1-day maximum streamflows decreased 39–52 percent because of regulation. In contrast to their effect on high flows, the dams increased low flows. The median of annual 7-day minimum flows in six of the seven study reaches increased under regulated streamflow conditions between 60 and 334 percent. On a seasonal basis, median monthly streamflows decreased from February to May and increased from September to January in all the reaches. However, the magnitude of these impacts usually decreased farther downstream from dams because of cumulative inflow from unregulated tributaries and groundwater entering the North, South, and main-stem Santiam Rivers below the dams. A Wilcox rank-sum test of monthly precipitation data from Salem, Oregon, and Waterloo, Oregon, found no significant difference between the pre-and post-dam periods, which suggests that the construction and operation of the dams since the 1950s and 1960s are a primary cause of alterations to the Santiam River basin streamflow regime. In addition to the streamflow analysis, this report provides a geomorphic characterization of the Santiam River basin and the associated conceptual framework for assessing possible geomorphic and ecological changes in response to river-flow modifications. Suggestions for future biomonitoring and investigations are also provided. This study was one in a series of similar tributary streamflow and geomorphic studies conducted for the Willamette Sustainable Rivers Project. The Sustainable Rivers Project is a national effort by the USACE and The Nature Conservancy to develop environmental flow requirements in regulated river systems.

Oregon↗

Accuracy of the Missouri River Least Tern and Piping Plover Monitoring Program: considerations for the future

The upper Missouri River system provides nesting and foraging habitat for federally endangered least terns (Sternula antillarum; hereafter “terns”) and threatened piping plovers (Charadrius melodus; hereafter “plovers”). These species are the subject of substantial management interest on the Missouri River for several reasons. First, ecosystem recovery is a goal for management agencies that seek to maintain or restore natural functions and native biological communities for the Missouri River system. Terns and plovers are recognized as important ecosystem components that are linked with the river’s ecological functions. Second, although both species breed beyond the Missouri River system, the Missouri River is one of the principal breeding areas in the Northern Great Plains; thus, the river system is a focal area for recovery actions targeted at regional population goals. Third, a Biological Opinion for Missouri River operations established annual productivity goals for terns and plovers, and the recovery plan for each species established annual population goals. Meeting these goals is a key motivation in management decision making and implementation with regard to both species. A myriad of conservation and management interests necessitate understanding numbers, distribution, and productivity of terns and plovers on the Missouri River system. To this end, a Tern and Plover Monitoring Program (TPMP) was implemented by the U.S. Army Corps of Engineers (hereafter “Corps”) in 1986, and has since provided annual estimates of tern and plover numbers and productivity for five Missouri River reservoirs and four river reaches (U.S. Army Corps of Engineers, 1993). The TPMP has served as the primary source of information about the status of terns and plovers on the Missouri River, and TPMP data have been used for a wide variety of purposes. In 2005, the U.S. Geological Survey (USGS) Northern Prairie Wildlife Research Center (NPWRC) was tasked by the Corps to evaluate the accuracy of the TPMP and provide guidance on revising the program to assess tern and plover numbers and reproductive success. Accordingly, NPWRC studied terns and plovers on two river reaches and one reservoir (hereafter “the evaluation”), and used the results of those studies to help understand properties and potential limitations of TPMP data and to provide guidance for TPMP revisions. The purpose of this report is to present an overview and evaluation of the TPMP data, the results of our intensive monitoring, and propose an alternative idea that provides a framework for making decisions about how to monitor terns and plovers.

Montana;Nebraska;North Dakota;South Dakota↗

Construction, calibration, and validation of the RBM10 water temperature model for the Trinity River, northern California

We constructed a one-dimensional daily averaged water-temperature model to simulate Trinity River temperatures for 1980–2013. The purpose of this model is to assess effects of water-management actions on water temperature and to provide water temperature inputs for a salmon population dynamics model. Simulated meteorological data, observed streamflow data, and observed water temperatures were used as model inputs to simulate a continuous 34-year time series of historical daily mean water temperature at eight locations along 112.2 river miles from Lewiston Dam near Weaverville, California, downstream to the Klamath River confluence. To demonstrate the utility of the model to inform management actions, we simulated three management alternatives to assess the effects of bypass flow augmentation in a drought year, 1994, and compared those results to the simulated historical baseline, referred to as the “No Action” alternative scenario. Augmentation flows from the Lewiston Dam bypass consist of temperature-controlled releases capable of cooling downstream water temperatures in hot times of the year, which can reduce the probability of disease outbreaks in fish populations. Outputs from the Trinity River water-temperature model were then used as inputs to an existing water-temperature model of the Klamath River to evaluate the effect of augmentation flow releases on water temperatures in the lower Klamath River. We structured the Trinity River water-temperature model in River Basin Model-10 (RBM10), which uses a simple equilibrium flow model, assuming discharge in each river segment on each day is transmitted downstream instantaneously. The model uses a heat-budget formulation to quantify heat flux at the air-water interface. Inputs for the heat budget are calculated from daily mean meteorological data, including net shortwave solar radiation, net longwave atmospheric radiation, air temperature, wind speed, vapor pressure, and a psychrometric constant needed to calculate the Bowen ratio. The modeling domain was divided into eight reaches ranging in length from 8.8 to 20.6 miles, which were calibrated and validated separately with observed water temperature data collected irregularly from 1980 to 2013. Root mean square errors of observed and simulated water temperatures for the eight reaches ranged from 0.25 to 1.12 degrees Celsius (°C). Mean absolute errors ranged from 0.18 to 0.89 °C. For model validation, a k -fold cross-validation technique was used. Validation root mean square error and mean absolute error for the eight reaches ranged from 0.24 to 1.11 °C and from 0.18 to 0.89 °C, respectively. Augmentation scenarios were based on historical hydrological and meteorological data, combined with prescribed flow and temperature releases from Lewiston Dam provided by the Bureau of Reclamation. Water releases were scheduled to achieve targeted flows of 2,500, 2,800, and 3,200 cubic feet per second in the lower Klamath River from mid-August through late September, coinciding with the upstream migration of adult fall-run Chinook salmon ( Oncorhynchus tshawytscha ). Water temperatures simulated at river mile 5.7 on the Klamath River showed a 5 °C decrease from the No Action historical baseline, which was near or greater than 23 °C when augmentation began in mid-August. Thereafter, an approximate 1 °C difference among augmentation scenarios emerged, with the decrease in water temperature commensurate to the level of augmentation. All augmentation scenarios simulated water temperatures equal to or less than 21 °C from mid-August through late September. Water temperatures equal to or greater than 23 °C are of particular interest because of a thermal threshold known to inhibit upstream migration of salmon. When temperatures exceed this approximate 23 °C threshold, Chinook salmon are known to congregate in high densities in thermal refugias and show extended residence times, which can potentially trigger epizootic outbreaks such as of Ichthyophthirius multifiliis (“Ich”) and Flavobacterium columnare (“Columnaris”) that were the causative factors of the Klamath River fish kill in 2002. A model with the ability to simulate water temperatures in response to management actions at the basin scale is a valuable asset for water managers who must make decisions about how best to use limited water resources, which directly affect the state of fisheries in the Klamath Basin.

California↗

Groundwater quality in the Mohawk and western New York River Basins, New York, 2016

Water samples were collected from July through December 2016 from 9 production wells and 13 domestic wells in the Mohawk River Basin, and from 17 production wells and 17 domestic wells in the western New York River Basins. The samples were collected and processed by using standard U.S. Geological Survey methods and were analyzed for 320 physicochemical properties and constituents, including dissolved gases, major ions, nutrients, trace elements, pesticides, volatile organic compounds, radionuclides, and indicator bacteria, to characterize groundwater quality in the basins. Analytical results are provided in the companion U.S. Geological Survey data release titled “Groundwater Quality Data From the Mohawk and Western New York River Basins, New York, 2016.” The Mohawk River Basin study area covers 3,500 square miles in New York. Of the 22 wells sampled in the Mohawk River Basin, 8 are completed in sand and gravel, and 14 are completed in bedrock aquifers. Most constituents in the samples from the Mohawk River Basin were present in concentrations below the maximum contaminant levels used in public supply drinking-water regulations by the New York State Department of Health and the U.S. Environmental Protection Agency. Values for some of the properties and concentrations of some constituents—pH, color, iron, manganese, aluminum, sodium, chloride, dissolved solids, radon-222, and heterotrophic plate count—sometimes equaled or exceeded primary, secondary, or proposed drinking-water standards. The western New York River Basins study area covers 5,340 square miles in western New York and includes parts of the Lake Erie and Niagara River Basins, the western Lake Ontario Basin (between the Niagara River and Genesee River Basins), and the Allegheny River Basin. Of the 34 wells sampled in the western New York River Basins, 16 are completed in sand and gravel, and 18 are completed in bedrock aquifers. Most constituents in the samples from the western New York River Basins were present in concentrations below the maximum contaminant levels used in public supply drinking-water regulations by the New York State Department of Health and the U.S. Environmental Protection Agency. Values for some of the properties and concentrations of some constituents—color, chloride, sodium, dissolved solids, iron, manganese, aluminum, arsenic, barium, radon-222, methane, total coliform bacteria, fecal coliform bacteria, and Escherichia coli bacteria—sometimes equaled or exceeded primary, secondary, or proposed drinking-water standards.

New York↗

Continuous stream discharge, salinity, and associated data collected in the lower St. Johns River and its tributaries, Florida, 2020

The U.S. Army Corps of Engineers, Jacksonville District, is deepening the St. Johns River channel in Jacksonville, Florida, from 40 to 47 feet along 13 miles of the river channel beginning at the mouth of the river at the Atlantic Ocean, in order to accommodate larger, fully loaded cargo vessels. The U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, monitored stage, discharge, and (or) water temperature and salinity at 26 continuous data collection stations in the St. Johns River and its tributaries. This is the fifth annual report by the U.S. Geological Survey on data collection for the Jacksonville Harbor deepening project. The report contains information pertinent to data collection during the 2020 water year, from October 2019 to September 2020. The addition of water-quality data collection at St. Johns River at Buffalo Bluff near Satsuma was the only modification to the previously installed network. Discharge and salinity varied widely during the data collection period, which included above-average rainfall for 3 of the 5 counties in the study area. Total annual rainfall for all counties ranked third among the annual totals computed for the 5 years considered for this study. Annual mean discharge at Clapboard Creek was highest among the tributaries, followed by Ortega River, Durbin Creek, Pottsburg Creek at U.S. 90, Cedar River, Trout River, Julington Creek, Pottsburg Creek near South Jacksonville, Dunn Creek, and Broward River, whose annual mean was lowest. Annual mean discharge at 8 of the 10 tributary monitoring sites was higher for the 2020 water year than for the 2019 water year, and the computed annual mean flow at Clapboard Creek was the highest over the 5 years considered for this study. The annual mean discharge for each of the main-stem sites was higher for the 2020 water year than for the 2019 water year except for Buffalo Bluff, which remained the same. Among the tributary sites, annual mean salinity was highest at Clapboard Creek, the site closest to the Atlantic Ocean, and was lowest at Durbin Creek, the site farthest from the ocean. Annual mean salinity data from the main-stem sites on the St. Johns River indicate that salinity decreased with distance upstream from the ocean, which was expected. Relative to annual mean salinity calculated for the 2019 water year, annual mean salinity at all monitoring locations was higher for the 2020 water year except at the tributary sites of Trout River, Dunn Creek, and Clapboard Creek, which were lower, and Durbin Creek, which remained the same. The 2020 annual mean salinity on the main-stem of the St. Johns River was the highest since the beginning of the study in 2016 at Dancy Point, Racy Point, Shands Bridge, below Shands Bridge, above Buckman Bridge, and Jacksonville (Acosta Bridge). Among the tributary sites, annual mean salinity rankings for 2020 were highest for Julington Creek and Ortega River, which were the second-highest on record for those sites.

Florida↗

Quality of water in Pascagoula and Escatawpa Rivers, Jackson County, Mississippi

The chemical and physical properties and the range of concentrations of most constituents in water in the Pascagoula and Escatawpa Rivers during the period May 17-19, 1977, varied rapidly between high and low tides, primarily as the result of interactions of freshwater inflow with highly mineralized Gulf waters. The water at a downstream site of the 11-mile study reach on the Pascagoula River was saline. On May 19, 1977, the dissolved-solids concentration at that site was 14,500 milligrams per liter. At the same time, the water at the mouth of Escatawpa River had a dissolved-solids concentration of 4,600 milligrams per liter. The specific conductance of the water at the downstream sites of both rivers increased with depth and progressively decreased upstream to sites where freshwater inflow was predominant. The specific conductance decreased upstream from a maximum of 40,000 micromhos per centimeter at 25°Celsius at site P1 to 60 micromhos at site P12 on Pascagoula River and from 30,000 micromhos at site E1 to 45 micromhos at site E9 on Escatawpa River. There was evidence of oxygen deficiency (less than 3.0 milligrams per liter) at many sites in deep pools where there is little circulation and mixing of the more dense saltwater. Dissolved-oxygen concentrations ranged from 2.1 to 8.2 milligrams per liter. Biochemical oxygen demand ranged from 0.1 to 3.5 milligrams per liter and was generally less than 2.0 milligrams per liter at most sites. A large part of the total organic carbon in the lower Pascagoula River was carried into the study area by freshwater inflow. Very little organic carbon was being discharged by the Escatawpa River into the Pascagoula River. Total nitrogen moved out of Pascagoula and Escatawpa Rivers at an extremely slow rate and in concentrations of less than 0.1 milligram per liter. The water temperature near the surface at downstream sites on Escatawpa River at low tide was elevated as much as 2.5°C (4.5°F), suggesting thermal loading. The fecal coliform and fecal streptococcal bacteria in Pascagoula and Escatawpa Rivers were in concentrations indicative of manmade pollution. The ratio of the concentrations in which these bacteria were present suggests that both rivers receive human enteric wastes.

Mississippi↗

Geohydrology and model analysis of the stream-aquifer system along the Arkansas River in Kearny and Finney counties, southwestern Kansas

A study was made, in cooperation with the Division of Water Resources, Kansas State Board of Agriculture, to determine geohydrologic conditions in an area comprising nearly 850,000 acres along the Arkansas River valley in Kearny and Finney Counties, southwestern Kansas. The Arkansas River meanders atop and interacts hydraulically with the area's multilayered, unconsolidated aquifer system. Declines in static water levels in wells in the heavily pumped lower aquifer ranged from 20 to 80 feet during 1974-80. The river is dry in much of the area. A digital computer model was calibrated to simulate the trends of historic water levels. Simulated 1974-80 conditions depicted an average annual recharge to the unconsolidated aquifer system of 66,900 acre-feet from precipitation and 36,200 acre-feet from river and canal seepage and boundary inflow. Simulated average annual discharge consisted of 634,800 acre-feet from pumpage and boundary outflow. Simulated average annual recharge to the unconsolidated aquifer system was 531,700 acre-feet less than average annual discharge, indicating the ground-water resource is currently (1982) being mined in the study area. Simulation also indicated that there would be sufficient saturated thickness in 2005 for irrigation if 1980 hydrologic conditions continued. Seepage losses from the Arkansas River and irrigation canals are a major source of recharge to the unconsolidated aquifer system. Therefore, the amount of flow in the Arkansas River would be important in determining the rate of future water-level declines in the study area. Streamflow seepage losses could be decreased by (1) decreasing the number of wells pumping in the study area in order to reduce downward leakage from the valley aquifer, or (2) increasing streamflow discharge in order to recharge the valley aquifer. The rate and direction of flow between the river and the valley aquifer depend on the hydraulic conductivity of the streambed and the hydraulic gradient between the river stage and the water table. As long as river stage remains high, the water table in the valley aquifer continues to rise. Seepage from the river to the valley aquifer decreases as the altitude difference between the river stage and the valley aquifer decreases, becoming insignificant when the water level in the valley aquifer nearly equals river stage. However, a rise in the water table in the valley aquifer because of recharge from the river will correspond to increased downward leakage to the lower aquifer, impeding recharge to the valley aquifer.

Kansas↗

Debris flows from tributaries of the Colorado River, Grand Canyon National Park, Arizona

A reconnaissance of 36 tributaries of the Colorado River indicates that debris flows are a major process by which sediment is transported to the Colorado River in Grand Canyon National Park. Debris flows are slurries of sediment and water that have a water content of less than about 40 percent by volume. Debris flows occur frequently in arid and semiarid regions. Slope failures commonly trigger debris flows, which can originate from any rock formation in the Grand Canyon. The largest and most frequent flows originate from the Permian Hermit Shale, the underlying Esplanade Sandstone of the Supai Group, and other formations of the Permian and Pennsylvanian Supai Group. Debris flows also occur in the Cambrian Muav Limestone and underlying Bright Angel Shale and the Quaternary basalts in the western Grand Canyon. Debris-flow frequency and magnitude were studied in detail in the Lava-Chuar Creek drainage at Colorado River mile 65.5; in the Monument Creek drainage at mile 93.5; and in the Crystal Creek drainage at mile 98.2. Debris flows have reached the Colorado River on an average of once every 20 to 30 years in the Lava-Chuar Creek drainage since about 1916. Two debris flows have reached the Colorado River in the last 25 years in Monument Creek. The Crystal Creek drainage has had an average of one debris flow reaching the Colorado River every 50 years, although the debris flow of 1966 has been the only flow that reached the Colorado River since 1900. Debris flows may actually reach the Colorado River more frequently in these drainages because evidence for all debris flows may not have been preserved in the channel-margin stratigraphy. Discharges were estimated for the peak flow of three debris flows that reached the Colorado River. The debris flow of 1966 in the Lava-Chuar Creek drainage had an estimated discharge of 4,000 cubic feet per second. The debris flow of 1984 in the Monument Creek drainage had a discharge estimated between 3,600 and 4,200 cubic feet per second. The debris flow of 1966 in the Crystal Creek drainage had a discharge estimated between 9,200 and 14,000 cubic feet per second. Determination of the effective cross-sectional area was a problem in all calculations involving superelevations on bends because areas near superelevation marks were 1.5 to 3.5 times larger than areas of upstream or downstream cross sections. Debris flows in the Grand Canyon generally are composed of 10 to 40 percent sand by weight and may represent a significant source of beach-building sand along the Colorado River. The particle-size distributions are very poorly sorted and the largest transported boulders were in the Crystal Creek drainage. The large boulders transported into the Colorado River by debris flows create or change hydraulic controls (rapids); these controls appear to be governed by the magnitude and frequency of tributary-flow events and the history of discharges on the Colorado River. Reworking of debris fans by the Colorado River creates debris bars that constrain the size of eddy systems and forms secondary rapids and riffles below tributary mouths.

Professional Paper↗

Exchanges of Water between the Upper Floridan Aquifer and the Lower Suwannee and Lower Santa Fe Rivers, Florida

Exchanges of water between the Upper Floridan aquifer and the Lower Suwannee River were evaluated using historic and current hydrologic data from the Lower Suwannee River Basin and adjacent areas that contribute ground-water flow to the lowest 76 miles of the Suwannee River and the lowest 28 miles of the Santa Fe River. These and other data were also used to develop a computer model that simulated the movement of water in the aquifer and river, and surface- and ground-water exchanges between these systems over a range of hydrologic conditions and a set of hypothetical water-use scenarios. Long-term data indicate that at least 15 percent of the average annual flow in the Suwannee River near Wilcox (at river mile 36) is derived from ground-water discharge to the Lower Suwannee and Lower Santa Fe Rivers. Model simulations of ground-water flow to this reach during water years 1998 and 1999 were similar to these model-independent estimates and indicated that ground-water discharge accounted for about 12 percent of the flow in the Lower Suwannee River during this time period. The simulated average ground-water discharge to the Lower Suwannee River downstream from the mouth of the Santa Fe River was about 2,000 cubic feet per second during water years 1998 and 1999. Simulated monthly average ground-water discharge rates to this reach ranged from about 1,500 to 3,200 cubic feet per second. These temporal variations in ground-water discharge were associated with climatic phenomena, including periods of strong influence by El Ni?o-associated flooding, and La Ni?a-associated drought. These variations showed a relatively consistent pattern in which the lowest rates of ground-water inflow occurred during periods of peak flood levels (when river levels rose faster than ground-water levels) and after periods of extended droughts (when ground-water storage was depleted). Conversely, the highest rates of ground-water inflow typically occurred during periods of receding levels that followed peak river levels.

Professional Paper↗

Stream-sediment geochemistry in mining-impacted streams: Sediment mobilized by floods in the Coeur D'Alene-Spokane River system, Idaho and Washington

Environmental problems associated with the dispersion of metal-enriched sediment into the Coeur d'Alene-Spokane River system downstream from the Coeur d'Alene Mining District in northern Idaho have been a cause of litigation since 1903, 18 years after the initiation of mining for lead, zinc, and silver. Although direct dumping of waste materials into the river by active mining operations stopped in 1968, metal-enriched sediment continues to be mobilized during times of high runoff and deposited on valley flood plains and in Coeur d'Alene Lake (Horowitz and others, 1993). To gauge the geographic and temporal variations in the metal contents of flood sediment and to provide constraints on the sources and processes responsible for those variations, we collected samples of suspended sediment and overbank deposits during and after four high-flow events in 1995, 1996, and 1997 in the Coeur d'Alene-Spokane River system with estimated recurrence intervals ranging from 2 to 100 years. Suspended sediment enriched in lead, zinc, silver, antimony, arsenic, cadmium, and copper was detected over a distance of more than 130 mi (the downstream extent of sampling) downstream of the mining district. Strong correlations of all these elements in suspended sediment with each other and with iron and manganese are apparent when samples are grouped by reach (tributaries to the South Fork of the Coeur d'Alene River, the South Fork of the Coeur d'Alene River, the main stem of the Coeur d'Alene River, and the Spokane River). Elemental correlations with iron and manganese, along with observations by scanning electron microscopy, indicate that most of the trace metals are associated with Fe and Mn oxyhydroxide compounds. Changes in elemental correlations by reach suggest that the sources of metal-enriched sediment change along the length of the drainage. Metal contents of suspended sediment generally increase through the mining district along the South Fork of the Coeur d'Alene River, decrease below the confluence of the North and South Forks, and then increase again downstream of the gradient flattening below Cataldo. Metal contents of suspended sediment in the Spokane River below Coeur d'Alene Lake were comparable to those of suspended sediment in the main stem of the Coeur d'Alene River above the lake during the 1997 spring runoff, but with somewhat higher Zn contents. Daily suspended-sediment loads were about 100 times larger in the 1996 flood (50-100-year recurrence interval) than in the smaller 1997 floods (2-5-year recurrence intervals). Significant differences in metal ratios and contents are also apparent between the two flood types. The predominant source of suspended sediment in the larger 1996 flood was previously deposited, metal-enriched flood-plain sediment, identified by its Zn/Pb ratio less than 1. Suspended sediment in the smaller 1997 floods had metal ratios distinct from those of the flood-plain deposits and was primarily derived from metal-enriched sediment stored within the stream channel, identified by a Zn/Pb ratio greater than 1. Sediment deposited during overbank flooding on the immediate streambank or natural levee of the river typically consists of sandy material with metal ratios and contents similar to those of the sandy streambed sediment in the adjacent river reach. Samples of overbank deposits in backlevee marshes collected after the 1996 flood have metal ratios similar to those of peak-flow suspended sediment in the same river reach, but generally lower metal contents.

Idaho, Washington↗

Estimation of constituent concentrations, densities, loads, and yields in lower Kansas River, northeast Kansas, using regression models and continuous water-quality monitoring, January 2000 through December 2003

The lower Kansas River is an important source of drinking water for hundreds of thousands of people in northeast Kansas. Constituents of concern identified by the Kansas Department of Health and Environment (KDHE) for streams in the lower Kansas River Basin include sulfate, chloride, nutrients, atrazine, bacteria, and sediment. Real-time continuous water-quality monitors were operated at three locations along the lower Kansas River from July 1999 through September 2004 to provide in-stream measurements of specific conductance, pH, water temperature, turbidity, and dissolved oxygen and to estimate concentrations for constituents of concern. Estimates of concentration and densities were combined with streamflow to calculate constituent loads and yields from January 2000 through December 2003. The Wamego monitoring site is located 44 river miles upstream from the Topeka monitoring site, which is 65 river miles upstream from the DeSoto monitoring site, which is 18 river miles upstream from where the Kansas River flows into the Missouri River. Land use in the Kansas River Basin is dominated by grassland and cropland, and streamflow is affected substantially by reservoirs. Water quality at the three monitoring sites varied with hydrologic conditions, season, and proximity to constituent sources. Nutrient and sediment concentrations and bacteria densities were substantially larger during periods of increased streamflow, indicating important contributions from nonpoint sources in the drainage basin. During the study period, pH remained well above the KDHE lower criterion of 6.5 standard units at all sites in all years, but exceeded the upper criterion of 8.5 standard units annually between 2 percent of the time (Wamego in 2001) and 65 percent of the time (DeSoto in 2003). The dissolved oxygen concentration was less than the minimum aquatic-life-support criterion of 5.0 milligrams per liter less than 1 percent of the time at all sites. Dissolved solids, a measure of the dissolved material in water, exceeded 500 milligrams per liter about one-half of the time at the three Kansas River sites. Larger dissolved-solids concentrations upstream likely were a result of water inflow from the highly mineralized Smoky Hill River that is diluted by tributary flow as it moves downstream. Concentrations of total nitrogen and total phosphorus at the three monitoring sites exceeded the ecoregion water-quality criteria suggested by the U.S. Environmental Protection Agency during the entire study period. Median nitrogen and phosphorus concentrations were similar at all three sites, and nutrient load increased moving from the upstream to downstream sites. Total nitrogen and total phosphorus yields were nearly the same from site to site indicating that nutrient sources were evenly distributed throughout the lower Kansas River Basin. About 11 percent of the total nitrogen load and 12 percent of the total phosphorus load at DeSoto during 2000-03 originated from wastewater-treatment facilities. Escherichia coli bacteria densities were largest at the middle site, Topeka. On average, 83 percent of the annual bacteria load at DeSoto during 2000-03 occurred during 10 percent of the time, primarily in conjunction with runoff. The average annual sediment loads at the middle and downstream monitoring sites (Topeka and DeSoto) were nearly double those at the upstream site (Wamego). The average annual sediment yield was largest at Topeka. On average, 64 percent of the annual suspended-sediment load at DeSoto during 2000-03 occurred during 10 percent of the time. Trapping of sediment by reservoirs located on contributing tributaries decreases transport of sediment and sediment-related constituents. The average annual suspended-sediment load in the Kansas River at DeSoto during 2000-03 was estimated at 1.66 million tons. An estimated 13 percent of this load consisted of sand-size particles, so approximately 216,000 tons of sand were transported

Scientific Investigations Report↗

Sediment-transport investigations of the upper Yellowstone River, Montana, 1999 through 2001: Data collection, analysis, and simulation of sediment transport

The upper Yellowstone River in Montana is an important State and national water resource, providing recreational, agricultural, and commercial benefits. Floods in 1996 and 1997, with recorded peak discharges having recurrence intervals close to 100 years, caused substantial streambank erosion and hill- slope mass wasting. Large quantities of sand-, gravel-, and cobble-sized material entrained by the flood flows became flood-bar deposits, creating a source of sediment available for transport during future floods. The flood damage and resulting sedimentation raised concerns about potential streambank-stabilization projects and how the river and riparian corridor might be managed in the future. The U.S. Geological Survey, in cooperation with the Park Conservation District, the Montana Department of Transportation, and the U.S. Army Corps of Engineers, investigated sediment transport in the upper Yellowstone River near Livingston from 1999 through 2001 as part of a cumulative effects study to provide a scientific basis for future river management decisions. The purpose of this report is to present the results of data collection, analysis, and simulation of sediment transport for the upper Yellowstone River. The study area included a 13.5-mile study reach of the upper Yellowstone River where substantial sediment transport occurred in 1996 and 1997. In this study area, the upper Yellowstone River is a high gradient, coarse-bed stream having a slope of about 0.0028 foot per foot or more than 14 feet per mile. The study area drains about 3,551 square miles, and runoff results primarily from snowmelt during the spring and summer months. As part of sediment-transport investigations, the U.S. Geological Survey surveyed river cross sections, characterized streambed-material particle size using particle counts and sieve analyses, and collected bedload- and suspended-sediment data during three runoff seasons (1999-2001). Data were collected for stream discharges that ranged from 2,220 cubic feet per second (typical of pre- and post-runoff discharge) to 25,100 cubic feet per second (about 125 percent of bankfull discharge). The distribution of streambed-material particle size was determined, and sediment-transport curves for bedload discharge, suspended-sediment discharge, and total-sediment discharge were developed. The threshold values of streamflow and average stream velocity needed for initiation of bedload transport for selected sediment-size classes showed that little to no bedload was transported for an average stream velocity below about 3 feet per second, and the only particle size transported as bedload at that velocity was sand. Over the range of stream discharges sampled and with silt- and finer-sized particles excluded, bedload discharge averaged about 18 percent of the total-sediment discharge, equal to bedload discharge plus suspended-sediment discharge. At the lowest and highest stream discharges sampled, bedload was, respectively, less than about 2 percent and about 30 percent of the total-sediment discharge. Over the range of stream discharges sampled, the sand-sized part of the total suspended-sediment discharge averaged about 48 percent, where the total suspended-sediment discharge included sand-, silt- and finer-sized particles. At the lowest and highest stream discharges sampled, the sand-sized part of the total suspended-sediment discharge was, respectively, less than about 16 percent and about 50 percent of the total suspended-sediment discharge. The sediment-transport curves were compared to curves for selected sites in the western United States having drainage areas ranging from 21 square miles to over 20,000 square miles. Daily sediment loads transported at bankfull discharge were calculated for each site and results were plotted in relation to drainage area. Results based on the 1999-2001 data-collection period indicate that the estimated daily bedload transported at bankfull discharge in the upper Yellowstone River exceeded the envelope line that bounds the upper end of the data for other selected sites in the Northern Rocky Mountains and is similar in magnitude to that for selected sites in Alaska having braided channels and glacial and snowmelt runoff. Similar comparisons for suspended sediment indicate that daily suspended-sediment load at bankfull discharge is relatively high in the upper Yellowstone River, plotting slightly above the envelope line that bounds the upper end of the data for other selected sites in the Northern Rocky Mountains. Sediment data were used to develop individual transport equations for seven size classes of sediment ranging from small cobbles to very fine sand. A step-wise regression procedure relating sediment discharge to important hydraulic variables showed that average stream velocity was the only significant variable at the 95-percent confidence level. Bedload and suspended-sediment data and equations indicate that more sand is transported for a given velocity than any other particle size, and very little sand-size sediment load is transported below an average stream velocity of about 2.5 feet per second. Transport of coarser-sized sediment (limited to bedload) becomes very little for an average velocity less than about 3.5 feet per second. Results for the 1999-2001 data-collection period indicate that sediment transport in the upper Yellowstone River tends to be limited more by the transport capacity of the stream (capacity or transport limited), than to the availability of sediment in the watershed (supply limited). Sediment data collected and analyzed were used to simulate sediment transport in the study reach using the BRIdge Stream Tube model for Alluvial River Simulation, or BRI-STARS computer model. The model was calibrated and verified using selected data from historical runoff periods. Simulated total-sediment loads, on a reach-averaged basis, were in good agreement with the total-sediment loads determined from the transport curve for the 2-year flood hydrograph but were considerably smaller for the total-sediment loads determined from the transport curve for the 50-, 100-, and 500-year flood hydrographs. The differences probably were largely due to the inability of the model to simulate streambank erosion, hillslope mass-wasting, and other channel-widening processes, which had supplied substantial quantities of sediment to the channel during the 1996 and 1997 floods, and probably continued to contribute to the sediment load in the subsequent years (1999-2001) when the data were collected. Furthermore, the transport curve was applied beyond the measured data for the highest discharges, and may thus be unreliable. Also, the transport curve derived from only limited data may not apply over the full duration of the hydrograph and sediment might be transported over only a portion of the hydrograph, especially for rivers like the upper Yellowstone where snowmelt runoff predominates. The true sediment discharge is, therefore, unknown and might be closer to the simulated values than to the values calculated from the transport curve.

Montana↗

Questa baseline and pre-mining ground-water quality investigation. 21. Hydrology and water balance of the Red River Basin, New Mexico, 1930-2004

A study of the hydrology of the Red River Basin of northern New Mexico, including development of a pre- mining water balance, contributes to a greater understanding of processes affecting the flow and chemistry of water in the Red River and its alluvial aquifer. Estimates of mean annual precipitation for the Red River Basin ranged from 22.32 to 25.19 inches. Estimates of evapotranspiration for the Red River Basin ranged from 15.02 to 22.45 inches or 63.23 to 94.49 percent of mean annual precipitation. Mean annual yield from the Red River Basin estimated using regression equations ranged from 45.26 to 51.57 cubic feet per second. Mean annual yield from the Red River Basin estimated by subtracting evapotranspiration from mean annual precipitation ranged from 55.58 to 93.15 cubic feet per second. In comparison, naturalized 1930-2004 mean annual streamflow at the Red River near Questa gage was 48.9 cubic feet per second. Although estimates developed using regression equations appear to be a good representation of yield from the Red River Basin as a whole, the methods that consider evapotranspiration may more accurately represent yield from smaller basins that have a substantial amount of sparsely vegetated scar area. Hydrograph separation using the HYSEP computer program indicated that subsurface flow for 1930-2004 ranged from 76 to 94 percent of streamflow for individual years with a mean of 87 percent of streamflow. By using a chloride mass-balance method, ground-water recharge was estimated to range from 7 to 17 percent of mean annual precipitation for water samples from wells in Capulin Canyon and the Hansen, Hottentot, La Bobita, and Straight Creek Basins and was 21 percent of mean annual precipitation for water samples from the Red River. Comparisons of mean annual basin yield and measured streamflow indicate that streamflow does not consistently increase as cumulative estimated mean annual basin yield increases. Comparisons of estimated mean annual yield and measured streamflow profiles indicates that, in general, the river is gaining ground water from the alluvium in the reach from the town of Red River to between Hottentot and Straight Creeks, and from Columbine Creek to near Thunder Bridge. The river is losing water to the alluvium from upstream of the mill area to Columbine Creek. Interpretations of ground- and surface-water interactions based on comparisons of mean annual basin yield and measured streamflow are supported further with water-level data from piezometers, wells, and the Red River.

New Mexico↗

Fecal-indicator bacteria in the Allegheny, Monongahela, and Ohio Rivers and selected tributaries, Allegheny County, Pennsylvania, 2001-2005

Concentrations of fecal-indicator bacteria were determined in 1,027 water-quality samples collected from July 2001 through August 2005 during dry- (72-hour dry antecedent period) and wet-weather (48-hour dry antecedent period and at least 0.3 inch of rain in a 24-hour period) conditions in the Allegheny, Monongahela, and Ohio Rivers (locally referred to as the Three Rivers) and selected tributaries in Allegheny County. Samples were collected at five sampling sites on the Three Rivers and at eight sites on four tributaries to the Three Rivers having combined sewer overflows. Water samples were analyzed for three fecal-indicator organisms fecal coliform, Escherichia coli (E. coli), and enterococci bacteria. Left-bank and right-bank surface-water samples were collected in addition to a cross-section composite sample at each site. Concentrations of fecal coliform, E. coli, and enterococci were detected in 98.6, 98.5, and 87.7 percent of all samples, respectively. The maximum fecal-indicator bacteria concentrations were collected from Sawmill Run, a tributary to the Ohio River; Sawmill Run at Duquesne Heights had concentrations of fecal coliform, E. coli, and enterococci of 410,000, 510,000, and 180,000 col/100 mL, respectively, following a large storm. The samples collected in the Three Rivers and selected tributaries frequently exceeded established recreational standards and criteria for bacteria. Concentrations of fecal coliform exceeded the Pennsylvania water-quality standard (200 col/100 mL) in approximately 63 percent of the samples. Sample concentrations of E. coli and enterococci exceeded the U.S. Environmental Protection Agency (USEPA) water-quality criteria (235 and 61 col/100 mL, respectively) in about 53 and 47 percent, respectively, of the samples. Fecal-indicator bacteria were most strongly correlated with streamflow, specific conductance, and turbidity. These correlations most frequently were observed in samples collected from tributary sites. Fecal-indicator bacteria concentrations and turbidity were correlated to the location of sample collection in the cross section. Most differences were between bank and composite samples; differences between right-bank and left-bank samples were rarely observed. The Allegheny River sites had more significant correlations than the Monongahela or Ohio River sites. Comparisons were made between fecal-indicator bacteria in composite samples collected during dry-weather, wet-weather day-one, wet-weather day-two (tributary sites only), and wet-weather day-three (Three Rivers sites only) events in the Three Rivers and selected tributary sites. The lowest median bacteria concentrations generally were observed in the dry-weather composite samples. All median bacteria concentrations in dry-weather composite samples in the five Three Rivers sites were below water-quality standards and criteria; bacteria concentrations in the upstream tributary sites rarely met all standards or criteria. Only Turtle Creek, Thompson Run, and Chartiers Creek had at least one median bacteria concentration below water-quality standards or criteria. Median bacteria concentrations in the composite samples generally were higher the day after a wet-weather event compared to dry-weather composite samples and other wet-weather composite samples collected. In the five Three Rivers sites, median bacteria concentrations 3 days after a wet-weather event in composite samples tended to fall below the water-quality standards and criteria; in the eight tributary sites, median bacteria concentrations in the dry-weather and wet-weather composite samples generally were above the water-quality standards or criteria. Composite samples collected at the upstream sites on the Three Rivers and selected tributaries generally had lower median bacteria concentrations than composite samples collected at the downstream sites during dry- and wet-weather events. Higher concentrations downstream may be because o

Pennsylvania↗

Simulation of Regional Ground-Water Flow in the Suwannee River Basin, Northern Florida and Southern Georgia

The Suwannee River Basin covers a total of nearly 9,950 square miles in north-central Florida and southern Georgia. In Florida, the Suwannee River Basin accounts for 4,250 square miles of north-central Florida. Evaluating the impacts of increased development in the Suwannee River Basin requires a quantitative understanding of the boundary conditions, hydrogeologic framework and hydraulic properties of the Floridan aquifer system, and the dynamics of water exchanges between the Suwannee River and its tributaries and the Floridan aquifer system. Major rivers within the Suwannee River Basin are the Suwannee, Santa Fe, Alapaha, and Withlacoochee. Four rivers west of the Suwannee River are the Aucilla, the Econfina, the Fenholloway, and the Steinhatchee; all drain to the Gulf of Mexico. Perhaps the most notable aspect of the surface-water hydrology of the study area is that large areas east of the Suwannee River are devoid of channelized, surface drainage; consequently, most of the drainage occurs through the subsurface. The ground-water flow system underlying the study area plays a critical role in the overall hydrology of this region of Florida because of the dominance of subsurface drain-age, and because ground-water flow sustains the flow of the rivers and springs. Three principal hydrogeologic units are present in the study area: the surficial aquifer system, the intermediate aquifer system, and the Floridan aquifer system. The surficial aquifer system principally consists of unconsoli-dated to poorly indurated siliciclastic deposits. The intermediate aquifer system, which contains the intermediate confining unit, lies below the surficial aquifer system (where present), and generally consists of fine-grained, uncon-solidated deposits of quartz sand, silt, and clay with interbedded limestone of Miocene age. Regionally, the intermediate aquifer system and intermediate con-fining unit act as a confining unit that restricts the exchange of water between the over-lying surficial and underlying Upper Floridan aquifers. The Upper Floridan aquifer is present throughout the study area and is extremely permeable and typically capable of transmitting large volumes of water. This high permeability largely is due to the widening of fractures and formation of conduits within the aquifer through dissolu-tion of the limestone by infiltrating water. This process has also produced numerous karst features such as springs, sinking streams, and sinkholes. A model of the Upper Floridan aquifer was created to better understand the ground-water system and to provide resource managers a tool to evaluate ground-water and surface-water interactions in the Suwannee River Basin. The model was developed to simulate a single Upper Floridan aquifer layer. Recharge datasets were developed to represent a net flux of water to the top of the aquifer or the water table during a period when the system was assumed to be under steady-state conditions (September 1990). A potentiometric-surface map representing water levels during September 1990 was prepared for the Suwannee River Water Management District (SRWMD), and the heads from those wells were used for calibration of the model. Additionally, flows at gaging sites for the Suwannee, Alapaha, Withlacoochee, Santa Fe, Fenholloway, Aucilla, Ecofina, and Steinhatchee Rivers were used during the calibration process to compare to model computed flows. Flows at seven first-magnitude springs selected by the SRWMD also were used to calibrate the model. Calibration criterion for matching potentiometric heads was to attain an absolute residual mean error of 5 percent or less of the head gradient of the system which would be about 5 feet. An absolute residual mean error of 4.79 feet was attained for final calibration. Calibration criterion for matching streamflow was based on the quality of measurements made in the field. All measurements used were rated ?good,? so the desire was for simulated values to be wi

Florida, Georgia↗

Flood of April 2-4, 2005, Delaware River Main Stem from Port Jervis, New York, to Cinnaminson, New Jersey

Several conditions, including saturated soils, snowmelt, and heavy rains, caused flooding on the Delaware River on April 2-4, 2005. The event occurred 50 years after the historic 1955 Delaware River flood, and only six months after a smaller but equally notable flood on September 18-19, 2004. The Delaware River flooded for a third time in 22 months in June, 2006. The peak flows and elevations of the 2005 flood were similar to those on June 28-29, 2006. The following report describes the April 2-4, 2005, Delaware River flood, and includes the associated precipitation amounts, peak flows and elevations, and flood frequencies. A comparison of historic Delaware River floods also is presented. The appendix of the report contains detailed information for 156 high-water mark elevations obtained on the main stem of the Delaware River from Port Jervis, New York, to Cinnaminson, New Jersey, for the April 2-4, 2005 flood. The April 2005 event originated with frequent precipitation from December 2004 to March 2005 which saturated the soils in the upper Delaware River Basin. The cold winter froze some of the soils and left a snowpack at higher elevations equivalent to as much as 10 inches of water in some areas. Temperatures rose above freezing, and heavy rains averaging 1 to 3 inches on March 27, 2005, melted some of the snow, causing the Delaware River to rise; however, peak elevations were still 2 to 7 feet below flood stage. Another round of rainfall averaging 2-5 inches in the basin on April 2, 2005, melted the remaining snowpack. The combination of snowmelt and runoff from the two storms produced flood conditions along the main stem of the Delaware River. Flood frequencies of flows at selected tributaries to the Delaware River did not exceed the 35-year recurrence intervals. The Delaware River main stem peak-flow recurrence intervals ranged from 40 to 80 years; flows were approximately 20 percent less than those from the peak of record in 1955. Peak elevations exceeded National Weather Service flood stages defined at continuous-record streamflow-gaging stations by 5 to 7 feet, but were on average 3 to 5 feet lower than the peak of record in August 1955. Peak elevations determined at 48 sites along the main stem of the Delaware River defined the flood profile between the gaging stations. The peak elevation in the tide-effected portion of the Delaware (downstream of Trenton, New Jersey), occurred on April 2, 2 days before the riverine peak, as a result of water pushed into the bay by a low-pressure system situated just off the coast. Every county located along the main stem of the Delaware River was declared a Federal disaster area. Property damage estimates in Pennsylvania, New York, and New Jersey exceeded $200 million.

Scientific Investigations Report↗

Influence of Cougar Reservoir Drawdown on Sediment and DDT Transport and Deposition in the McKenzie River Basin, Oregon, Water Years 2002-04

Construction of a selective withdrawal tower at Cougar Reservoir in the South Fork McKenzie River, Oregon, during 2002-05 resulted in a prolonged release of sediment and high-turbidity water to downstream reaches throughout the summer of 2002, with additional episodic releases during storms in the following winters. Suspended-sediment concentrations and loads at five continuously monitored turbidity and discharge gaging stations were estimated using regression methods. Deposition in salmonid spawning beds was measured using infiltration bags. Stations were located upstream and downstream of Cougar Reservoir in the South Fork McKenzie River, in the mainstem of the McKenzie River upstream of the South Fork and downstream of Blue River, and in Blue River downstream of Blue River Reservoir. During 2002, Cougar Reservoir released approximately 17,000 tons of suspended sediment into the South Fork McKenzie River, or more than twice the incoming load from the South Fork upstream of the reservoir. In 2003 and 2004, the release of sediment from Cougar Reservoir decreased to 10,900 and 4,100 tons, respectively. Although Cougar Reservoir likely was a substantial source of sediment to the lower reaches during water years 2002 and 2003, the lack of continuous turbidity monitoring at stations other than the South Fork McKenzie River prior to January 2003 prevents quantification of the actual contribution to the mainstem. During water year 2004, the only year with complete records at all sites, Cougar Reservoir released about 24 percent (4,100 tons) of the sediment load estimated on the mainstem near Vida (16,900 tons); however, the relative contribution of Cougar Reservoir is expected to have been substantially larger during 2002 and 2003 when the newly exposed river channel in the upper reaches of the reservoir was actively eroding and migrating. Deposition of fine (less than 0.063-millimeter diameter) sediment into spawning beds, measured with the use of deployed infiltration bags, was greatest downstream of Cougar and Blue River Reservoirs (1.0 and 1.2 percent of total sediments, respectively). Deposition was least in the high-energy, unregulated environments (about 0.25 percent) of the South Fork McKenzie River above Cougar Reservoir and in the mainstem above the South Fork, and intermediate near Vida, the most downstream site on the mainstem. DDT, applied throughout much of the upper McKenzie River drainage basin to control spruce budworm during the 1950s, was detected in the South Fork near Rainbow in the form of its metabolites DDD and DDE in fine sediment captured in the infiltration bags. DDE also was detected in infiltration bags deployed in the McKenzie River near Vida, downstream of the South Fork. All concentrations of DDD and DDE were less than the aquatic-life criterion for bed sediment. DDT species were not detected in water samples, including samples collected during large storms. The reservoir apparently acted as a trap for sediment and DDT throughout the course of its existence, facilitating degradation of the trapped DDT, and may have been a source for both during the construction period in 2002-05, but the lack of detections during storms indicates that DDT transport was small. Transport of detectable amounts of DDT likely was limited to periods of high suspended-sediment concentrations (greater than 75-100 milligrams per liter). Infiltration bags were deployed during August 2003-July 2004 and were a useful device for measuring fine-sediment deposition and for chemical analysis of the deposited material. Deposition of fine-grained sediment downstream of the flood-control dams may be reduced if bed-moving events can be periodically reintroduced to those reaches.

Scientific Investigations Report↗