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USGS2021

Ontogeny of eDNA shedding during early development in Chinook Salmon (Oncorhynchus tshawytscha)

Knowledge of the timing of major life history events in aquatic species is important for informing conservation and resource management planning. Accordingly, surveys of environmental DNA (eDNA) have been performed to determine the efficacy of eDNA for providing information on life history events, primarily focusing on the timing of events associated with spawning, and these studies have proved successful. However, spawning represents only one part of the life history, and therefore, information on eDNA shedding during other life history stages is needed to fill gaps in knowledge. Here, we explored eDNA shedding during early life history (from fertilized eggs until near yolk sac absorption) in Chinook Salmon ( Oncorhynchus tshawytscha ) at three biomasses in a laboratory environment. We found that fertilized eggs shed little eDNA prior to hatching. Hatching coincided with a spike in eDNA, and we observed a significant and positive relationship between eDNA concentration and the number of hatched eggs. The concentration of eDNA shed by larvae after hatching was not consistent across post-hatch sampling days, suggesting developmental and behavioral changes associated with larval ontogeny may affect eDNA shedding rate. These results indicate that eDNA data may be used to identify hatch timing and verify successful reproduction in oviparous aquatic fishes. The application of eDNA to early life history broadens the capacity of eDNA-based methods for assessing population status and trends.

Environmental DNA↗

USGS2008

Description of Existing Data for Integrated Landscape Monitoring in the Puget Sound Basin, Washington

This report summarizes existing geospatial data and monitoring programs for the Puget Sound Basin in northwestern Washington. This information was assembled as a preliminary data-development task for the U.S. Geological Survey (USGS) Puget Sound Integrated Landscape Monitoring (PSILM) pilot project. The PSILM project seeks to support natural resource decision-making by developing a 'whole system' approach that links ecological processes at the landscape level to the local level (Benjamin and others, 2008). Part of this effort will include building the capacity to provide cumulative information about impacts that cross jurisdictional and regulatory boundaries, such as cumulative effects of land-cover change and shoreline modification, or region-wide responses to climate change. The PSILM project study area is defined as the 23 HUC-8 (hydrologic unit code) catchments that comprise the watersheds that drain into Puget Sound and their near-shore environments. The study area includes 13 counties and more than four million people. One goal of the PSILM geospatial database is to integrate spatial data collected at multiple scales across the Puget Sound Basin marine and terrestrial landscape. The PSILM work plan specifies an iterative process that alternates between tasks associated with data development and tasks associated with research or strategy development. For example, an initial work-plan goal was to delineate the study area boundary. Geospatial data required to address this task included data from ecological regions, watersheds, jurisdictions, and other boundaries. This assemblage of data provided the basis for identifying larger research issues and delineating the study-area boundary based on these research needs. Once the study-area boundary was agreed upon, the next iteration between data development and research activities was guided by questions about data availability, data extent, data abundance, and data types. This report is not intended as an exhaustive compilation of all available geospatial data, rather, it is a collection of information about geospatial data that can be used to help answer the suite of questions posed after the study-area boundary was defined. This information will also be useful to the PSILM team for future project tasks, such as assessing monitoring gaps, exploring monitoring-design strategies, identifying and deriving landscape indicators and metrics, and visual geographic communication. The two main geospatial data types referenced in this report - base-reference layers and monitoring data - originated from numerous and varied sources. In addition to collecting information and metadata about the base-reference layers, the data also were collected for project needs, such as developing maps for visual communication among team members and with outside groups. In contrast, only information about the data was typically required for the monitoring data. The information on base-reference layers and monitoring data included in this report is only as detailed as what was readily available from the sources themselves. Although this report may appear to lack consistency between data records, the varying degree of details contained in this report are merely a reflection of varying source detail. This compilation is just a beginning. All data listed also are being catalogued in spreadsheets and knowledge-management systems. Our efforts are continual as we develop a geospatial catalog for the PSILM pilot project.

Open-File Report↗

USGS2016

Collection methods and descriptions of coral cores extracted from massive corals in Dry Tortugas National Park, Florida, U.S.A.

Cores from living coral colonies were collected from Dry Tortugas National Park, Florida, U.S.A., to obtain skeletal records of past coral growth and allow geochemical reconstruction of environmental variables during the corals’ centuries-long lifespans. The samples were collected as part of the U.S. Geological Survey Coral Reef Ecosystems Studies project ( http:/coastal.er.usgs.gov/crest ) that provides science to assist resource managers tasked with the stewardship of coral reef resources. Three colonies each of the coral species Orbicella faveolata and Siderastrea siderea were collected in May 2012 using the methods described herein and as approved under National Park Service scientific collecting permit number DRTO-2012-SCI-0001 and are cataloged under accession number DRTO-353. These coral samples can be used to retroactively construct environmental parameters, including sea-surface temperature, by measuring the elemental composition of the coral skeleton. The cores described here, and others (see http://olga.er.usgs.gov/coreviewer/ ), can be requested, on loan, for scientific study. Photographic images for each coral in its ocean environment, the coral cores as curated and slabbed, and the X-rays of the slabs can be found in an associated U.S. Geological Survey Data Release.

Florida↗

USGS2006

Regional evaluation of the hydrogeologic framework, hydraulic properties, and chemical characteristics of the intermediate aquifer system underlying southern west-central Florida

Three major aquifer systems-the surficial aquifer system, the intermediate aquifer system, and the Floridan aquifer system-are recognized in the approximately 5,100-square-mile southern west-central Florida study area. The principal source of freshwater for all uses is ground water supplied from the three aquifer systems. Ground water from the intermediate aquifer system is considered only moderately abundant compared to the Upper Floridan aquifer, but it is an important source of water where the Upper Floridan aquifer contains water too mineralized for most uses. In the study area, the potential ground-water resources of the intermediate aquifer system were evaluated by regionally assessing the vertical and lateral distribution of hydrogeologic, hydraulic, and chemical characteristics. Although the intermediate aquifer system is considered a single entity, it is composed of multiple water-bearing zones separated by confining units. Deposition of a complex assemblage of carbonate and siliciclastic sediments during the late Oligocene to early Pliocene time resulted in discontinuities that are reflected in transitional and abrupt contacts between facies. Discontinuous facies produce water-bearing zones that may be locally well-connected or culminate abruptly. Changes in the depositional environment created the multilayered intermediate aquifer system that contains as many as three zones of enhanced water-bearing capacity. The water-bearing zones consist of indurated limestone and dolostone and in some places unindurated sand, gravel, and shell beds, and these zones are designated, in descending order, as Zone 1, Zone 2, and Zone 3. Zone 1 is thinnest (<80 feet thick) and is limited to <20 percent (southern part) of the study area. Zone 2, the only regionally extensive zone, is characterized by moderately low permeability. Zone 3 is found in about 50 percent of the study area, has the highest transmissivities, and generally is in good hydraulic connection with the underlying Upper Floridan aquifer. In parts of the study area, particularly in southwestern Hillsborough County and southeastern De Soto and Charlotte Counties, Zone 3 likely is contiguous with and part of the Upper Floridan aquifer. Transmissivity of the intermediate aquifer system ranges over five orders of magnitude from about 1 to more than 40,000 feet squared per day (ft2/d), but rarely exceeds 10,000 ft2/d. The overall transmissivity of the intermediate aquifer system is substantially lower (2 to 3 orders of magnitude) than the underlying Upper Floridan aquifer. Transmissivity varies vertically among the zones within the intermediate aquifer system; Zone 2 has the lowest median transmissivity (700 ft2/d), Zone 1 has a moderate median transmissivity (2,250 ft2/d), and Zone 3 has the highest median transmissivity (3,400 ft2/d). Additionally, the transmissivity varies geographically (from site to site) within a zone. Specifically, a region of relatively low transmissivity (<100 ft2/d) throughout the vertical extent of the intermediate aquifer system is present in the central part of the study area. This low transmissivity region is encompassed by a larger region of moderately low transmissivity (<1,000 ft2/d) that covers a large part of the study area. Clay beds and fine-grained carbonates form the confining units between the water-bearing zones and are characterized by low leakance. Leakance through the intermediate aquifer system confining units ranges over 4 orders of magnitude from 4.2x10-7 to 6.0x10-3 feet per day per foot [(ft/d)/ft]. Despite the large range, the geometric mean and median leakances of individual confining units are within the same order of magnitude, 10-5 (ft/d)/ft, which is 2 orders of magnitude less than the median leakance of the semiconfining unit within the Upper Floridan aquifer. Major ion concentrations in water from the intermediate aquifer system, and throughout the ground-water flow system, generally increase with depth. T

Scientific Investigations Report↗

USGS2019

White-tailed deer movements and space use on Fire Island: A four-year radio-telemetry study 2015-2016 post-Hurricane Sandy assessment

Hurricane Sandy provided a unique opportunity to better understand the movements of Fire Island’s dense white-tailed deer (Odocoileus virginianus borealis) herds. White-tailed deer inhabit all areas of Fire Island National Seashore and their high densities negatively affect native vegetation in several areas of the island, especially as disturbed areas attempt to recover after a catastrophic storm like Hurricane Sandy. Understanding deer movements and space use helps land managers to prioritize white-tailed deer population size and the health and recovery potential of Fire Island’s natural lands according to their management goals. The results of this study will inform Fire Island staff as they prepare to initiate the tasks set forth by the Seashore’s approved Deer Management Plan. We used radio-collars fitted with Very High Frequency (VHF) signal and Global Positioning System (GPS) technology to monitor movements of white-tailed deer for four years after Hurricane Sandy. The greatest movements of Fire Island’s adult female white-tailed deer occurred in spring each year. Home range and core area sizes varied among study areas and years, but suggested hierarchical dominance among Fire Island’s deer populations. Potentially six distinct populations were delineated through analysis of GPS radio-collar data, though these divisions also reflect the concentrated sampling efforts of deer capture. Nearly all deer monitored shared time between natural and nearby built environments. Since Hurricane Sandy, deer movements in Fire Island’s Wilderness are divided by the storm-induced breach. GPS radio-collars provided a wealth of data for analysis of deer movements and space use, and this report is simply a snapshot of the potential information we intend to gain from this study.

New York↗

USGS2010

Secular variation in economic geology

The temporal pattern of ore deposits on a constantly evolving Earth reflects the complex interplay between the evolving global tectonic regime, episodic mantle plume events, overall changes in global heat flow, atmospheric and oceanic redox states, and even singular impact and glaciation events. Within this framework, a particular ore deposit type will tend to have a time-bound nature. In other words, there are times in Earth history when particular deposit types are absent, times when these deposits are present but scarce, times when they are abundant, and still other times for which we lack sufficient data. Understanding of such secular variation provides a critical first-order tool for exploration targeting, because rocks that have formed or were deformed during a certain time slice may be very permissive for a given deposit type, whereas identification of rocks of less favorable ages would help eliminate large areas during exploration programs. Secular analysis, therefore, is potentially a powerful tool for mineral resource assessment in poorly known terranes, providing a quick filter for favorability of a given deposit type using age of host rocks. Factors bearing on the known age distribution of a particular type of deposit include the following: (1) uneven preservation, (2) data gaps, (3) contingencies of plate motions, and (4) long-term secular changes in the Earth System. The present special issue of Economic Geology is focused on the latter factor, although all of these are interrelated. The selective preservation of certain mineral deposit types and the greater susceptibility for shallowly formed ores in tectonically active environments to be lost to erosion define a pattern that is superimposed on the secular formational trends (e.g., Groves et al., 2005a , b ; Kerrich et al., 2005 ). With improved geochronological methods and the availability of information on important mineral deposits from most parts of the world, data gaps for defining broad temporal distributions of ore types are becoming smaller. It has been increasingly recognized that ore deposit formation is also correlated with plate tectonic setting. Nevertheless, a complex Earth history of supercontinent assembly and breakup has led to the fragmentation of many Paleozoic and Precambrian mineral provinces. The use of plate reconstructions in economic geology, although extremely controversial and conjectural before the late Paleozoic, is critical for defining these provinces prior to the added complications resulting from post-ore plate motions. It is now well established that the temporal patterns of many types of mineral deposits (Fig. 1 1 ) reflect the formation or break-up of supercontinents and the preservation potential of deposits formed during these periods ( Barley and Groves, 1992 ; Titley, 1993 ; Kerrich et al., 2005 ; Goldfarb et al., 2009 ). Approximate time periods for such formation and break-up, respectively, include 2800–2500 and 2450–2100 Ma for Kenorland, 2100–1800 and 1600–1300 Ma for Nuna/Columbia, 1300–1100 and 850–600 Ma for Rodinia, and 600–300 Ma and 200–60 Ma for Gondwanaland-Pangea. A new supercontinent, Amasia, has begun to form during the past 250 m.y., thus overlapping Pangea break-up. Many of the formation-preservation patterns are themselves controlled by progressive cooling of Earth, the change from a mantle-plume buoyancy style to subduction-dominated tectonics, a decreasing buoyancy of the subcontinental lithospheric mantle, and depth of ore formation. In general, orogenic Au, volcanogenic massive sulfide (VMS), epithermal Au-Ag, and porphyry Cu±Au and Mo porphyry deposits form in active margins during periods of supercontinent assembly. Numerous other ore deposit types show an association with supercontinent formation, but develop inland of the active margin. These include many of the MVT Pb-Zn deposits and unconformity-type U deposits. The Tertiary Carlin-type deposits within the deformed shelf sequences along the North American craton margin also appear to have formed during the ongoing growth of Amasia. Those ores associated with periods of supercontinent breakup or attempted breakup are more difficult to define. They probably include diamond, Bushveld-type Ni-Cu-PGE, IOCG, and clastic-dominated Pb-Zn (or SEDEX) deposits in intracontinental areas of failed rifting, and other clastic-dominated Pb-Zn deposits in areas of actual breakup. In all cases, however, these temporal/spatial distributions are ultimately controlled by the secular character of Earth history.

Economic Geology↗

USGS2019

Geology of the Monte Blanco borate deposits, Furnace Creek Wash, Death Valley, California

The Monte Blanco borate deposits are located along the southern margin of Death Valley’s Furnace Creek Wash, south of Twenty Mule Team Canyon road in California. Topographic and geologic mapping by S. Muessig and F.M. Byers, Jr., in 1954 documented these deposits’ geologic settings, geometries, mineralogies, and chemical characteristics. They estimated borate resources at the time to be in excess of 550,000 tons B 2 O 3 . The borate bodies are composed of predominantly ulexite and colemanite. They lie beneath Monte Blanco itself and along a northwest-trending series of conspicuous, white hills and mounds formed by northeasterly dipping, fine-grained sedimentary beds and basaltic volcanic rocks of the Miocene and Pliocene Furnace Creek Formation. Geologic data suggest that in Miocene and Pliocene time, fine-grained sediments, volcanic debris and flows, and volcanically associated, boron-rich fluids gradually filled a fairly flat playa-like environment. At times, thick beds of felty crystals of ulexite developed and were interlayered as lenses in a thick series of mudstones as is seen today at the Eagle Borax works. After burial, the exterior of the ulexite deposit was altered to massive colemanite by ground water, which produced the “shell” of colemanite that typically surrounds the presently outcropping ulexite bodies.

California↗

USGS2009

Water- and Bed-Sediment Quality of Seguchie Creek and Selected Wetlands Tributary to Mille Lacs Lake in Crow Wing County, Minnesota, October 2003 to October 2006

Mille Lacs Lake and its tributaries, located in east-central Minnesota, are important resources to the public. In addition, many wetlands and lakes that feed Mille Lacs Lake are of high resource quality and vulnerable to degradation. Construction of a new four-lane expansion of U.S. Highway 169 has been planned along the western part of the drainage area of Mille Lacs Lake in Crow Wing County. Concerns exist that the proposed highway could affect the resource quality of surface waters tributary to Mille Lacs Lake. Baseline water- and bed-sediment quality characteristics of surface waters tributary to Mille Lacs Lake were needed prior to the proposed highway construction. The U.S. Geological Survey, in cooperation with the Minnesota Department of Transportation, characterized the water- and bed-sediment quality at selected locations that the proposed route intersects from October 2003 to October 2006. Locations included Seguchie Creek upstream and downstream from the proposed route and three wetlands draining to Mille Lacs Lake. The mean streamflow of Seguchie Creek increased between the two sites: flow at the downstream streamflow-gaging station of 0.22 cubic meter per second was 5.6 percent greater than the mean streamflow at the upstream streamflow-gaging station of 0.21 cubic meter per second. Because of the large amount of storage immediately upstream from both gaging stations, increases in flow were gradual even during intense precipitation. The ranges of most constituent concentrations in water were nearly identical between the two sampling sites on Seguchie Creek. No concentrations exceeded applicable water-quality standards set by the State of Minnesota. Dissolved-oxygen concentrations at the downstream gaging station were less than the daily minimum standard of 4.0 milligrams per liter for 6 of 26 measurements. Constituent loads in Seguchie Creek were greater at the downstream site than the upstream site for all measured, including dissolved chloride (1.7 percent), ammonia plus organic nitrogen (13 percent), total phosphorus (62 percent), and suspended sediment (11 percent) during the study. All constituents had seasonal peaks in spring and fall. The large loads during the fall resulted from unusually large precipitation and streamflow patterns. This caused the two greatest streamflow peaks at both sites to occur during October (2004 and 2005). In Seguchie Creek, bed-sediment concentrations of five metals and trace elements (arsenic, cadmium, chromium, lead, and zinc) exceeded the Interim Sediment Quality Guidelines (ISQG) set by the Canadian Council of Ministers of the Environment. Bed-sediment samples from the upstream site had more exceedances of ISQGs for metals and trace elements than did samples from the downstream site (seven and two exceedances, respectively). Bed-sediment samples from the downstream site had more exceedances of ISQGs (20 exceedances) for semivolatile organic compounds than did samples from the upstream site (8 exceedances), indicating different sources for organic compounds than for metals and trace elements. Concentrations of 11 semivolatile organic compounds exceeded ISQGs: ancenaphthene, acenaphthylene, anthracene, benzo[a]anthracene, benzo[a]pyrene, chrysene, fluoranthene, fluorene, naphthalene, phenanthrene, and pyrene. In bed-sediment samples collected from three wetlands, concentrations of all six metals exceeded ISQGs: arsenic, cadmium, chromium, copper, lead, and zinc. Concentrations of three semivolatile organic compounds exceeded ISQGs: flouranthene, phenanthrene, and pyrene. Results indicate that areas appearing relatively undisturbed and of high resource value can have degraded quality from previous unknown land use.

Scientific Investigations Report↗

USGS2021

Managing for RADical ecosystem change: Applying the Resist-Accept-Direct (RAD) framework

Ecosystem transformation involves the emergence of persistent ecological or social–ecological systems that diverge, dramatically and irreversibly, from prior ecosystem structure and function. Such transformations are occurring at increasing rates across the planet in response to changes in climate, land use, and other factors. Consequently, a dynamic view of ecosystem processes that accommodates rapid, irreversible change will be critical for effectively conserving fish, wildlife, and other natural resources, and maintaining ecosystem services. However, managing ecosystems toward states with novel structure and function is an inherently unpredictable and difficult task. Managers navigating ecosystem transformation can benefit from considering broader objectives, beyond a traditional focus on resisting ecosystem change, by also considering whether accepting inevitable change or directing it along some desirable pathway is more feasible (that is, practical and appropriate) under some circumstances (the RAD framework). By explicitly acknowledging transformation and implementing an iterative RAD approach, natural resource managers can be deliberate and strategic in addressing profound ecosystem change.

Frontiers in Ecology and the Environment↗

USGS2010

Coastwide Reference Monitoring System (CRMS)

In 1990, the U.S. Congress enacted the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) in response to growing awareness of a land loss crisis in Louisiana. Projects funded by CWPPRA require monitoring and evaluation of project effectiveness, and there is also a need to assess the cumulative effects of all projects to achieve a sustainable coastal environment. In 2003, the Louisiana Office of Coastal Protection and Restoration (OCPR) and the U.S. Geological Survey (USGS) received approval from the CWPPRA Task Force to implement the Coastwide Reference Monitoring System (CRMS) as a mechanism to monitor and evaluate the effectiveness of CWPPRA projects at the project, region, and coastwide levels. The CRMS design implements a multiple reference approach by using aspects of hydrogeomorphic functional assessments and probabilistic sampling. The CRMS program is as dynamic as the coastal habitats it monitors. The program is currently funded through CWPPRA and provides data for a variety of user groups, including resource managers, academics, landowners, and researchers.

Louisiana↗

USGS1998

Flow and geochemistry along shallow ground-water flowpaths in an agricultural area in southeastern Wisconsin

Water-quality and geohydrologic data were collected from 19 monitor wells and a stream in an agricultural area in southeastern Wisconsin. These sites were located along a 2,700-ft transect from a local ground-water high to the stream. The transect is approximately parallel to the horizontal direction of ground-water flow at the water table. Most of the wells were installed in unconsolidated deposits at five locations along the transect and include an upgradient well nest, a midgradient well nest, a downgradient well nest, wells in the lowland area near the stream, and wells installed in the stream bottom. The data collected from this study site were used to describe the water quality and geohydrology of the area and to explain and model the variations in water chemistry along selected ground-water flowpaths. Water samples from most wells and the stream were analyzed for major ions, nutrients, pesticides, dissolved organic carbon, aluminum, tritium, CFCs, 15N, 18O, and dissolved gases. Measurements of temperature, pH, specific conductance, and dissolved oxygen were made in the field. Concentrations of all dissolved constituents were below Wisconsin ground-water quality enforcement standards. The concentrations of both nitrate and ammonium in precipitation concentrated by evapotranspiration are roughly equal to the concentrations of either in the shallow ground waters. The nitrogen and oxygen isotope data, however, indicate that soil ammonium, ammonium fertilizer, and animal waste are possible nitrate sources. Concentrated precipitation can also supply dissolved sulfate to the shallow ground waters and may be a principal source of pesticides to the ground water. However, some input of dissolved chloride to the ground water from mineral or anthropogenic sources is necessary. X-ray diffraction analyses of samples from 2 cores show the most abundant mineral to be dolomite, with subordinate quartz, microclme, and plagioclase, and minor amounts of mica, hornblende, and chlorite. Hydraulic conductivities determined from slug tests at selected wells range from 0.006 to 55 feet per day, with most values between 0.4 and 12 feet per day. A cross-sectional ground-water flow model, representing the water-table flow system, was developed for the site and was used to identify possible ground-water flowpaths for geocli^mical modeling. The model was calibrated against measured water levels and was most sensitive to variation in recharge and hydraulic conductivity. The calibrated model shows that downward flow from shallow to deeper wells within a nest may occur at the upgradient and midgradient well nests, but that flow from each well nest travels beneath downgradient nests to the stream. Pathline and travel-time analysis performed on the calibrated flow-model output yielded travel times to well screens that range from 5.8 to 59 years with a recharge of 4 inches per yr. Recharge dates based on tritium and CFC concentrations range from pre-1955 to 1986 and are consistent with flowpaths1 and travel times in the calibrated flow model. Changes in water quality along ground-water flowpaths were evaluated using the geochemical model PHREEQC. Geochemical mole balance models of shallow ground-water formation show that the principal reaction, by an order of magnitude, is dissolution of dolomite with CO2 . Concentration factors in the mole-balance models range from 1 to 11, with most values between 5 and 10, which provides independent support for the concentration factor of 8 based on recharge estimates used in the flow model. Ground water recharging at mid- and downgradient wells is oxic and contains dissolved nitrate, whereas the ground water discharging to the stream is anoxic and contains dissolved ammonium. Redox environments were defined at each well on the basis of relative concentrations of various dissolved redox-active species. Chemically permissible flowpaths inferred from the observed sequence of redox environments at well sites are consistent with flowpaths in the ground-water flow model. The transition from nitrate in recharging ground water to ammonium in ground water discharging to the stream suggests the possibility of nitrate reduction along the flowpath. None of the techniques employed in this study, however, were able to prove the occurrence of this reaction.

Michigan, Wisconsin↗

USGS2005

The no-project alternative analysis: An early product of the Tahoe Decision Support System

We report on the development of a No-project alternative analysis (NPAA) or “business as usual” scenario with respect to a 20-year projection of 21 indicators of environmental and socioeconomic conditions in the Lake Tahoe Basin for the Tahoe Regional Planning Agency (TRPA). Our effort was inspired by earlier work that investigated the tradeoffs between an environmental and an economic objective. The NPAA study has implications for a longer term goal of building a Tahoe Decision Support System (TDSS) to assist the TRPA and other Basin agencies in assessing the outcomes of management strategies. The NPAA assumes no major deviations from current management practices or from recent environmental or societal trends and planned Environmental Improvement Program (EIP) projects. Quantitative “scenario generation” tools were constructed to simulate site-specific land uses, various population categories, and associated vehicle miles traveled. Projections of each indicator’s attainment status were made by building visual conceptual models of the relevant natural and social processes, extrapolating trends, and using available models, research, and expert opinion. We present results of the NPAA, projected indicator status, key factors affecting the indicators, indicator functionality, and knowledge gaps. One important result is that current management practices may slow the loss or degradation of environmental qualities but not halt or reverse it. Our analysis also predicts an increase in recreation and commuting into and within the basin, primarily in private vehicles. Private vehicles, which are a critical mechanism by which the Basin population affects the surrounding environment, are a key determinant of air-quality indicators, a source of particulate matter affecting Secchi depth, a source of noise, and a factor in recreational and scenic quality, largely owing to congestion. Key uncertainties in the NPAA include climate change, EIP project effectiveness, and external population, economic activity, and air pollution.

Lake Tahoe Basin↗

USGS2005

Multispectral imaging contributions to global land ice measurements from space

Global Land Ice Measurements from Space (GLIMS) is an international consortium established to acquire satellite images of the world's glaciers, analyse them for glacier extent and changes, and assess change data for causes and implications for people and the environment. Although GLIMS is making use of multiple remote-sensing systems, ASTER (Advanced Spaceborne Thermal Emission and reflection Radiometer) is optimized for many needed observations, including mapping of glacier boundaries and material facies, and tracking of surface dynamics, such as flow vector fields and supraglacial lake development. Software development by GLIMS is geared toward mapping clean-ice and debris-covered glaciers; terrain classification emphasizing snow, ice, water, and admixtures of ice with rock debris; multitemporal change analysis; visualization of images and derived data; and interpretation and archiving of derived data. A global glacier database has been designed at the National Snow and Ice Data Center (NSIDC, Boulder, Colorado); parameters are compatible with and expanded from those of the World Glacier Inventory (WGI). These technology efforts are summarized here, but will be presented in detail elsewhere. Our presentation here pertains to one broad question: How can ASTER and other satellite multispectral data be used to map, monitor, and characterize the state and dynamics of glaciers and to understand their responses to 20th and 21st century climate change? Our sampled results are not yet glaciologically or climatically representative. Our early results, while indicating complexity, are generally consistent with the glaciology community's conclusion that climate change is spurring glacier responses around the world (mainly retreat). Whether individual glaciers are advancing or retreating, the aggregate average of glacier change must be climatic in origin, as nonclimatic variations average out. We have discerned regional spatial patterns in glaciological response behavior; these patterns are best attributed to climate-change variability and to regional differences in glacier size and response times. In many cases, glacier length changes under-represent the magnitude of glacier ablation, because thinning (sometimes without immediate length changes) is also important. An expanded systematic, uniform analysis of many more glaciers is needed to isolate the glacier response components due to climatic and nonclimatic perturbations, to produce quantitative measures of regional variation in glacier changes, and to predict future regional glacier trends relevant to water resources, glaciological hazards, and global sea level. This comprehensive assessment (to be completed in stages) is expected to lend a critically needed filter to identify successful climate models that explain recent glacier changes and change patterns (and hence, are apt to describe future changes) and to eliminate unsuccessful models. ?? 2005 Elsevier Inc. All rights reserved.

Remote Sensing of Environment↗

USGS2011

Shifting species interactions in terrestrial dryland ecosystems under altered water availability and climate change

Species interactions play key roles in linking the responses of populations, communities, and ecosystems to environmental change. For instance, species interactions are an important determinant of the complexity of changes in trophic biomass with variation in resources. Water resources are a major driver of terrestrial ecology and climate change is expected to greatly alter the distribution of this critical resource. While previous studies have documented strong effects of global environmental change on species interactions in general, responses can vary from region to region. Dryland ecosystems occupy more than one-third of the Earth's land mass, are greatly affected by changes in water availability, and are predicted to be hotspots of climate change. Thus, it is imperative to understand the effects of environmental change on these globally significant ecosystems. Here, we review studies of the responses of population-level plant-plant, plant-herbivore, and predator-prey interactions to changes in water availability in dryland environments in order to develop new hypotheses and predictions to guide future research. To help explain patterns of interaction outcomes, we developed a conceptual model that views interaction outcomes as shifting between (1) competition and facilitation (plant-plant), (2) herbivory, neutralism, or mutualism (plant-herbivore), or (3) neutralism and predation (predator-prey), as water availability crosses physiological, behavioural, or population-density thresholds. We link our conceptual model to hypothetical scenarios of current and future water availability to make testable predictions about the influence of changes in water availability on species interactions. We also examine potential implications of our conceptual model for the relative importance of top-down effects and the linearity of patterns of change in trophic biomass with changes in water availability. Finally, we highlight key research needs and some possible broader impacts of our findings. Overall, we hope to stimulate and guide future research that links changes in water availability to patterns of species interactions and the dynamics of populations and communities in dryland ecosystems.

Biological Reviews↗

USGS2021

Integrated science for the study of perfluoroalkyl and polyfluoroalkyl substances (PFAS) in the environment—A strategic science vision for the U.S. Geological Survey

Concerns related to perfluoroalkyl and polyfluoroalkyl substances (PFAS) in sources of drinking water and in natural and engineered environments have captured national attention over the last few decades. This report provides an overview of the science gaps that exist in the fields of study related to PFAS that are relevant to the U.S. Geological Survey mission and identifies opportunities where the U.S. Geological Survey can help address these gaps on the basis of the agency’s capabilities and expertise. The integrated science activities envisioned in this document can be designed to address science needs at local, regional, and national scales and varying timeframes as stakeholders are engaged and their needs evolve. This document is intended as an information resource for U.S. Geological Survey scientists who are prioritizing and planning research related to PFAS and may be useful for developing partnerships and collaborations with other scientists, agencies, and stakeholders.

Circular↗

USGS2006

Benthic habitat and geologic mapping of the outer continental shelf of north-central California

The Fanny Shoal area is located between North Farallon Island and Cordell Bank approximately 40 miles west of San Francisco, California. The area lies within the Gulf of the Farallones National Marine Sanctuary (GFNMS) which is located just a few miles from San Francisco. The waters within the GFNMS are part of a nationally significant marine ecosystem encompassing a diversity of highly productive marine habitats. Protection of the living and cultural resources at the sites are administered by the National Oceanic and Atmospheric Administration (NOAA). The U.S. Geological Survey (USGS) in cooperation with the Golden Gate National Recreation Area (GGNRA) and NOAA, including the GFNMS, and Monterey Bay National Marine Sanctuary (MBNMS), collected side-scanning sonar, and underwater video data over three cruises in July of 2003, and April of 2004. The data are consolidated into a geographic information system (GIS) to produce benthic habitat and geologic maps that provide researchers and those involved in decision making with crucial, georeferenced geologic information that will aid in preserving the area's environment.

California↗

USGS2019

US Topo Product Standard

This document defines a U.S. Geological Survey (USGS) digital topographic map. This map product series, named “US Topo,” is modeled on the now historical USGS 7.5-minute (1:24,000 scale) topographic map series produced and printed by the USGS from 1947 to 2006. US Topo maps have the same extent, scale, and general layout as the historical topographic maps. US Topo maps incorporate an orthorectified image (hereinafter referred to as “orthoimage”) and shaded relief image along with a selection of data that were included in the historical 7.5-minute topographic maps. Between June and September of 2017, the USGS transitioned the format of US Topo maps to be published, by using a geospatial extension, in an International Organization for Standardization (ISO) 32000-compliant Adobe® portable document format (PDF) that is called a “geospatial PDF.” Previously, US Topo maps were published, by using geospatial extensions patented by TerraGo® Technologies, in PDF in a format called a “GeoPDF®.” The geospatial PDF design allows a user to zoom in and out in a georeferenced environment, turn layers on and off, view or print any combination of layers, and print any portion of the map at the published scale. US Topo maps are intended to serve conventional map users by providing geographic information system (GIS) information in symbolized form in the customary topographic map layout. The maps are not intended for advanced GIS analysis applications. These products are built on standard coordinate systems and include full U.S. National Grid (USNG) lines, making US Topo maps particularly useful for emergency first-response operations. These maps are also used by traditional topographic map users, such as resource managers, planners, and recreational users who continue to have a need for the symbolized feature data contained in the 7.5-minute quadrangle maps. Full-size style sheet templates in PDF defining the placement of map elements, marginalia, and font sizes and styles accompany this standard. US Topo maps published as geospatial PDFs are fashioned to conform to these style sheets so that a user can print out a map at the 1:24,000, 1:25,000, or 1:20,000 scale using the dimensions of the traditional standard 7.5-minute quadrangle. Symbology and type specifications for feature content and detailed requirements for geospatial content will be published separately. This document is an update of the US Topo Product Standard published in 2011 (Cooley and others, 2011). It is applicable to all US Topo maps. Updates in this version include the introduction of an ISO 32000-compliant geospatial PDF as a new file format for published maps; new style sheet templates for 1:24,000-scale maps (conterminous United States and Hawaii), 1:25,000-scale maps (Alaska), and 1:20,000-scale maps (Puerto Rico and U.S. Virgin Islands); an updated US Topo Map Symbol attachment; minor updates to text, including changes to the features and layers included in the US Topo product and the sheet size of the US Topo maps; updated figures demonstrating the US Topo product; an updated metadata file containing map-specific information.

Techniques and Methods↗

USGS2000

Ground-water microbiology and geochemistry

Up-to-date coverage and a unique, multidisciplinary approach The ongoing effort to protect our valuable ground-water resources necessarily involves scientists and engineers from many disciplines. Ground-Water Microbiology and Geochemistry, Second Edition is designed to bridge the historical lack of communication among these disciplines by detailing-in language that cuts across specialties-the impact of microorganisms and microbial processes on ground-water systems. Carefully revised to reflect the many recent discoveries that have been made in the field, the Second Edition begins with an overview of microbiology, ideal for hydrologists and others who may lack formal training in the field. These initial chapters systematically cover the kinds of microorganisms found in subsurface environments, focusing on their growth, metabolism, genetics, and ecology. The second part of the book offers a hydrologic perspective on how microbial processes affect ground-water geochemistry in pristine systems. It also introduces the different classes of ground-water systems, and gives an overview of techniques for sampling subsurface environments. Readers gain an understanding of biogeochemical cycling in ground-water systems-in coverage unique to this book-and how ground-water chemistry can be used to study microbial processes in aquifer systems. The final section of the book deals with the biodegradation of human-introduced contaminants in ground-water systems, with an up-to-date review of the physiology, biochemistry, and redox conditions that favor biodegradation processes. Ground-Water Microbiology and Geochemistry, Second Edition is important reading for geoscientists, hydrologists, and environmental engineers, as well as for water planners and lawyers involved in environmental issues. It also serves as a compelling text for upper-level undergraduate and graduate courses in ground-water chemistry.

Book↗