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USGS2019

The effectiveness of non-native fish removal techniques in freshwater ecosystems: a systematic review

In aquatic systems, biological invasions can result in adverse ecological effects. Management techniques available for non-native fish removal programs (including eradication and population size control) vary widely, but include chemicals, harvest regimes, physical removal, or biological control. For management agencies, deciding on what non-native fish removal program to use has been challenging because there is little reliable information about the relative effectiveness of these measures in controlling or eradicating non-native fish. We conducted a systematic review, including a critical appraisal of study validity, to assess the effectiveness of different non-native fish removal methods, and to identify the factors that influence the overall success rate of each type of method. We found 95 relevant studies, generating 158 data sets. The evidence base was dominated by poorly documented studies with inadequate experimental designs (76% of removal projects). When the management goal was non-native fish eradication, chemical treatments were relatively successful (antimycin 75%; rotenone 89%) compared to other interventions. Electrofishing and passive removal measure studies indicated successful eradication was possible (58% each respectively) but required intensive effort and multiple treatments over a number of years. Of these studies with sufficient information, electrofishing had the highest success for population size control (56% of data sets). Overall, inadequate data quality and completeness severely limited our ability to make strong conclusions about the relationships between non-native fish abundance and different methods of eradication and population control, and the factors influencing the overall success rate of each method. Our review highlights that there is considerable scope for improving our evaluations of non-native fish removal methods. It is recommended that programs should have explicitly stated objectives, better data reporting, and study designs that (when possible and appropriate) incorporate replicated and controlled investigations with rigorous, long-term quantitative monitoring. Future research on the effectiveness of non-native fish removal methods should focus on: (1) the efficacy of existing or potentially new removal measures in larger, more complex environments; (2) a broader range of removal measures in general, and (3) phenotypic characteristics of individual fish within a population that fail to be eradicated or controlled.

Environmental Reviews↗

USGS1996

Episodic acidification of small streams in the northeastern United States: Ionic controls of episodes

As part of the Episodic Response Project (ERP), we intensively monitored discharge and stream chemistry of 13 streams located in the Northern Appalachian region of Pennsylvania and in the Catskill and Adirondack Mountains of New York from fall 1988 to spring 1990. The ERP clearly documented the occurrence of acidic episodes with minimum episodic pH ≤ 5 and inorganic monomeric Al (Al im ) concentrations > 150 μg/L in at least two study streams in each region. Several streams consistently experienced episodes with maximum Al im concentrations >350 μg/L. Acid neutralizing capacity (ANC) depressions resulted from complex interactions of multiple ions. Base cation decreases often made the most important contributions to ANC depressions during episodes. Organic acid pulses were also important contributors to ANC depressions in the Adirondack streams, and to a lesser extent, in the Catskill and Pennsylvania streams. Nitrate concentrations were low in the Pennsylvania streams, whereas the Catskill and Adirondack study streams had high NO 3 - concentrations and large episodic pulses (≤ 54 μ eq/L). Most of the Pennsylvania study streams also frequently experienced episodic pulses of SO 4 2- (≤ 78 μ eq/L), whereas the Adirondack and Catskill streams did not. High baseline concentrations of SO 4 2- (all three study areas) and NO 3 - (Adirondacks and Catskills) reduced episodic minimum ANC, even when these ions did not change during episodes. The ion changes that controlled the most severe episodes (lowest minimum episodic ANC) differed from the ion changes most important to smaller, more frequent episodes. Pulses of NO 3 - (Catskills and Adirondacks), SO 4 2- (Pennsylvania), or organic acids became more important during major episodes. Overall, the behavior of streamwater SO 4 2- and NO 3 - is an indicator that acidic deposition has contributed to the severity of episodes in the study streams.

Ecological Applications↗

USGS2015

U.S. Geological Survey Chesapeake science strategy, 2015-2025—Informing ecosystem management of America’s largest estuary

Executive Summary The U.S. Geological Survey (USGS) has the critical role of providing scientific information to improve the understanding and management of the Chesapeake Bay ecosystem. The USGS works with Federal, State, and academic science partners to provide research and monitoring, and communicate results of these activities to enhance ecosystem management for both the Chesapeake and other National ecosystems. The USGS Chesapeake Science Strategy was prepared to guide science activities to address the Chesapeake Bay Watershed Agreement (2014–2025), to support the Department of the Interior (DOI) involvement in the Bay restoration efforts, and align with the USGS Mission Area (MA) Science strategies. The Chesapeake Bay is our Nation’s largest estuary, and provides critical goods and services to the people, fish, and wildlife that use the 64,000-square-mile watershed. The Chesapeake Bay watershed contains over 3,600 species of fish, wildlife, and plants and provides spawning grounds for many ecologically and economically important species including striped bass and blue crabs. The Bay watershed lies in the heart of the Atlantic Flyway and has 29 species of waterfowl, about 1 million of which winter in the region. The size of the Chesapeake seafood harvest is third in the Nation, only behind the Atlantic and Pacific Oceans. Along with agricultural production, tourism, and recreation, the estimated economic value of the services from the Chesapeake Bay watershed is about $100 billion annually. However, the health of the Bay ecosystem began to decline at the beginning of the 20th century due to overfishing and increasing human population and associated land change. The Chesapeake Bay Program (CBP) is the Federal-State cooperative effort that started in 1983 to restore the Bay and watershed. Given the ecological and economic importance of the Chesapeake ecosystem, President Obama issued an Executive Order (EO) in 2009 for increased Federal leadership in the CBP to enhance the pace of restoration, and the supporting strategy was released in 2010. The EO directed the Federal Government, including the U.S. Department of the Interior (DOI), represented by the National Park Service (NPS), the U.S. Fish & Wildlife Service (FWS), and the USGS, to expand its efforts and increase leadership to restore the Bay and its watershed. The USGS and other Federal agencies expanded their activities in 2011 to meet the President’s Chesapeake EO. Since the EO was released, there have been several important changes in the USGS, DOI, and the CBP including: (1) the Chesapeake Bay Watershed Agreement, (2) increased DOI leadership in the CBP, and (3) the release of the USGS MA science strategies. The EO strategy served as a foundation for the Chesapeake Bay Watershed Agreement that was signed in 2014 by the CBP Partners, and has goals and outcomes to be met by 2025. The USGS developed the Chesapeake Science Strategy to guide our activities to address the Chesapeake Bay Watershed Agreement, DOI leadership in the CBP, and USGS MA strategies. Improving the understanding of fish and wildlife population and health, and the factors affecting their condition is the emphasis of the Strategy. The science focuses on documenting the critical ecosystem connections in the Chesapeake, and providing implications to enhance decision making for restoration and conservation activities. The revised Strategy has four themes that address 7 of the 10 goals in the Chesapeake Bay Watershed Agreement: Enhance science to support restoration, and conservation of fish, wildlife, and critical habitats. Characterize and explain changes in water quality, and its effect on freshwater and estuarine ecosystems. Assess and forecast effects of climate and land change on ecosystem conditions. Synthesize and provide information to support ecosystem management. The structure and function of biological communities of the Bay and its watershed are extremely complex and are affected by a variety of stressors and conditions. To better define the issues being addressed, the USGS has developed cross-cutting questions that define some of the most important scientific challenges where multiple disciplines and collaborators are needed to address an issue. The initial questions include: How do land and climate changes affect freshwater fish communities, health, and habitats? What are the relations among land use, water quality, contaminants, and the health of fish and wildlife? How are coastal wetlands and their carrying capacity for waterbirds affected by changing climate and land use? How is the water quality of rivers and estuaries responding to restoration actions, and changing land use? What are some of the best opportunities for management actions to benefit multiple restoration outcomes?

Delaware, Maryland, New York, Pennsylvania, Virgin↗

USGS2021

Farmland in U.S. Conservation Reserve Program has unique floral composition that promotes bee summer foraging

Bee conservation is a topic of global concern, particularly in agroecosystems where their contribution to crop pollination is highly valued. Over a decade ago, bees and other pollinators were made a priority of the Conservation Reserve Program (CRP), a U.S. federal program that pays land owners to establish a conservation cover, typically grassland, on environmentally sensitive farmland. Despite large financial investment in this program, few studies have measured the benefit of CRP to bees, particularly in complex agroecosystems with abundant alternative forage. To determine if CRP land seeded with pollinator-attractive native flowers and/or introduced legumes provides distinct floral composition that attracts more foraging bees than non-CRP habitats, we compared CRP land to paired non-CRP fields and roadsides at 31 sites in Michigan, U.S.A.. We found CRP land had unique floral species community composition, higher floral abundance, greater species richness, more native floral species, and greater inflorescence coverage. Greater inflorescence coverage on CRP land was associated with a greater abundance of both honey bees and wild bees than either non-CRP fields or roadsides, as was native flower abundance for wild bees. Showy native plant species were important forage resources on CRP land: Monarda fistulosa was the most foraged upon species by both honey bees and wild bees, and goldenrod species were important late-summer forage resources for honey bees. These findings demonstrate the benefit of managing CRP land with herbaceous seed mixes to create dense, showy, native plant communities that provide summer-long resources to both bee groups. Insights from this study could be used to enhance the composition of future conservation program investments and management of non-CRP land to benefit pollinators.

Michigan↗

USGS2023

Evaluations of Lagrangian egg drift models: From a laboratory flume to large channelized rivers

To help better interpret computational models in predicting drift of carp eggs in rivers, we present a series of model assessments for the longitudinal egg dispersion. Two three-dimensional Lagrangian particle tracking models, SDrift and FluEgg, are evaluated in a series of channels with increasing complexity. The model evaluation demonstrates that both models are able to accommodate channel complexity and provide a wide range of dispersion coefficients: K l = 0 (1 − 100) Hu ∗ with H being water depth and u ∗ being shear velocity. In a straight channel with K l = 0 (1) Hu ∗ SDrift predicts weaker longitudinal dispersion than FluEgg in the early stage as a result of weak vertical mixing associated with smooth wall turbulence. With sufficient time, SDrift and FluEgg predict similar egg dispersion, accounting for the differential advection due to the vertical velocity profile. In an idealized curved channel with K l = 0 (10) Hu ∗ , dispersion is driven by both vertical and transverse velocity profiles. SDrift yields slightly larger dispersion coefficients than FluEgg. In a real river with channel-training structures and having K l = 0 (100) Hu ∗ SDrift predicts a stronger longitudinal dispersion than FluEgg due to substantial local turbulent eddies and velocity gradients. To summarize, FluEgg shows good performance in capturing dispersion due to vertical velocity profiles and cross-channel velocity gradients. SDrift shows excellent model capabilities of revealing various dispersion mechanisms in addition to the vertical and cross-channel velocity variations. They include the initial turbulent diffusion stage with growing dispersion coefficients and strong dispersion due to in-stream hydraulic structures and localized turbulence.

Missouri↗

USGS2001

Our evolving conceptual model of the coastal eutrophication problem

A primary focus of coastal science during the past 3 decades has been the question: How does anthropogenic nutrient enrichment cause change in the structure or function of nearshore coastal ecosystems? This theme of environmental science is recent, so our conceptual model of the coastal eutrophication problem continues to change rapidly. In this review, I suggest that the early (Phase I) conceptual model was strongly influenced by limnologists, who began intense study of lake eutrophication by the 1960s. The Phase I model emphasized changing nutrient input as a signal, and responses to that signal as increased phytoplankton biomass and primary production, decomposition of phytoplankton-derived organic matter, and enhanced depletion of oxygen from bottom waters. Coastal research in recent decades has identified key differences in the responses of lakes and coastal-estuarine ecosystems to nutrient enrichment. The contemporary (Phase II) conceptual model reflects those differences and includes explicit recognition of (1) system-specific attributes that act as a filter to modulate the responses to enrichment (leading to large differences among estuarine-coastal systems in their sensitivity to nutrient enrichment); and (2) a complex suite of direct and indirect responses including linked changes in: water transparency, distribution of vascular plants and biomass of macroalgae, sediment biogeochemistry and nutrient cycling, nutrient ratios and their regulation of phytoplankton community composition, frequency of toxic/harmful algal blooms, habitat quality for metazoans, reproduction/growth/survival of pelagic and benthic invertebrates, and subtle changes such as shifts in the seasonality of ecosystem functions. Each aspect of the Phase II model is illustrated here with examples from coastal ecosystems around the world. In the last section of this review I present one vision of the next (Phase III) stage in the evolution of our conceptual model, organized around 5 questions that will guide coastal science in the early 21st century: (1) How do system-specific attributes constrain or amplify the responses of coastal ecosystems to nutrient enrichment? (2) How does nutrient enrichment interact with other stressors (toxic contaminants, fishing harvest, aquaculture, nonindigenous species, habitat loss, climate change, hydrologic manipulations) to change coastal ecosystems? (3) How are responses to multiple stressors linked? (4) How does human-induced change in the coastal zone impact the Earth system as habitat for humanity and other species? (5) How can a deeper scientific understanding of the coastal eutrophication problem be applied to develop tools for building strategies at ecosystem restoration or rehabilitation?

Marine Ecology Progress Series↗

USGS2024

Sources of bias in applying close-kin mark–recapture to terrestrial game species with different life histories

Close-kin mark–recapture (CKMR) is a method analogous to traditional mark–recapture but without requiring recapture of individuals. Instead, multilocus genotypes (genetic marks) are used to identify related individuals in one or more sampling occasions, which enables the opportunistic use of samples from harvested wildlife. To apply the method accurately, it is important to build appropriate CKMR models that do not violate assumptions linked to the species’ and population's biology and sampling methods. In this study, we evaluated the implications of fitting overly simplistic CKMR models to populations with complex reproductive success dynamics or selective sampling. We used forward-in-time, individual-based simulations to evaluate the accuracy and precision of CKMR abundance and survival estimates in species with different longevities, mating systems, and sampling strategies. Simulated populations approximated a range of life histories among game species of North America with lethal sampling to evaluate the potential of using harvested samples to estimate population size. Our simulations show that CKMR can yield nontrivial biases in both survival and abundance estimates, unless influential life history traits and selective sampling are explicitly accounted for in the modeling framework. The number of kin pairs observed in the sample, in combination with the type of kinship used in the model (parent–offspring pairs and/or half-sibling pairs), can affect the precision and/or accuracy of the estimates. CKMR is a promising method that will likely see an increasing number of applications in the field as costs of genetic analysis continue to decline. Our work highlights the importance of applying population-specific CKMR models that consider relevant demographic parameters, individual covariates, and the protocol through which individuals were sampled.

Ecology↗

USGS2026

Improved estimates of relative occurrence and abundance using opportunistic surveys and presence-only observations: A zero-inflated integrated species distribution model

Modeling tools for estimating and forecasting shifts in species distributions are becoming increasingly valuable for conservation planning and response. This is especially true for wild bird populations, which have been declining across habitats and regions. Species distribution models (SDM) represent a diverse set of tools with options for addressing various sources of bias. Complex spatial processes associated with rare or clustered species can be accounted for using zero-inflated SDMs, whereas biased survey data can be integrated with additional data sources to improve estimates. Each option addresses an important and common source of bias, but the two SDM frameworks have not been implemented together previously. We present a novel zero-inflated extension of an integrated SDM framework for a Poisson regression (ZI-iSDM), allowing for the estimation of independent occurrence and abundance processes by integrating opportunistic survey and presence-only data. We validated performance of this ZI-iSDM using simulated datasets under different degrees of species rarity and density on the landscape as well as sampling bias in opportunistic datasets. We additionally applied this model to real survey data for multiple wild bird species using publicly available observation data combined with open-access environmental information to describe habitat associations. We found that integrating presence-only data, such as banding or harvest events, can compensate for potential deficiencies in opportunistic surveys by expanding sampling to be more representative of available and used habitat. Additionally, models that first differentiated occurrence and abundance using a ZI term were better suited for approximating distributions of spatially clustered species.

Ecological Modeling↗

USGS2023

Conserving habitat for migratory ungulates: How wide is a migration corridor?

Conserving migratory ungulates relies on the analysis of GPS collar data and associated maps of migration corridors to inform management and policy actions. Current methods for identifying migratory corridors use complex statistical models designed to account for movement uncertainty rather than estimating the amount of space required by animals to migrate. Furthermore, such methods can complicate conservation efforts by producing highly variable corridor widths and non-contiguous corridors that do not fully connect seasonal ranges. To remedy, we propose an intuitive line buffer approach for delineating individual migration corridors that is simple to implement and focuses on the functional corridor widths needed by migratory ungulates. By buffering a line that connects successive GPS locations, we can delineate individual migration corridors with consistent widths that are robust to variable parameters (GPS fix rate, travel speed, tortuosity) and provide contiguous connection between seasonal ranges. Using a combination of expert knowledge, simulation and 10-min GPS collar data collected from mule deer ( Odocoileus hemionus ) and pronghorn ( Antilocapra americana ), we suggest 400–600 m are reasonable estimates of functional migration corridor widths for individuals of those species. Synthesis and applications . Our line buffer approach is intended to simplify migration corridor delineation, improve transparency and encourage a broader discussion of functional corridor widths. These considerations help advance efforts to conserve habitat within migration corridors and prioritize conservation efforts within a single corridor or across multiple corridors.

Journal of Applied Ecology↗

USGS2009

Delayed conifer mortality after fuel reduction treatments: Interactive effects of fuel, fire intensity, and bark beetles

Many low‐elevation dry forests of the western United States contain more small trees and fewer large trees, more down woody debris, and less diverse and vigorous understory plant communities compared to conditions under historical fire regimes. These altered structural conditions may contribute to increased probability of unnaturally severe wildfires, susceptibility to uncharacteristic insect outbreaks, and drought‐related mortality. Broad‐scale fuel reduction and restoration treatments are proposed to promote stand development on trajectories toward more sustainable structures. Little research to date, however, has quantified the effects of these treatments on the ecosystem, especially delayed and latent tree mortality resulting directly or indirectly from treatments. In this paper, we explore complex hypotheses relating to the cascade of effects that influence ponderosa pine (Pinus ponderosa) and Douglas‐fir (Pseudotsuga menziesii) mortality using structural equation modeling (SEM). We used annual census and plot data through six growing seasons after thinning and four growing seasons after burning from a replicated, operational‐scale, completely randomized experiment conducted in northeastern Oregon, USA, as part of the national Fire and Fire Surrogate study. Treatments included thin, burn, thin followed by burn (thin + burn), and control. Burn and thin + burn treatments increased the proportion of dead trees while the proportion of dead trees declined or remained constant in thin and control units, although the density of dead trees was essentially unchanged with treatment. Most of the new mortality (96%) occurred within two years of treatment and was attributed to bark beetles. Bark beetle‐caused tree mortality, while low overall, was greatest in thin + burn treatments. SEM results indicate that the probability of mortality of large‐diameter ponderosa pine from bark beetles and wood borers was directly related to surface fire severity and bole charring, which in turn depended on fire intensity, which was greater in units where thinning increased large woody fuels. These results have implications when deciding among management options for restoring ecosystem health in similar ponderosa pine and Douglas‐fir forests.

Ecological Applications↗

USGS2022

Great diversity of KSα sequences from bat-associated microbiota suggests novel sources of uncharacterized natural products

Polyketide synthases (PKSs) are multidomain enzymes in microorganisms that synthesize complex, bioactive molecules. PKS II systems are iterative, containing only a single representative of each domain: ketosynthase alpha (KS α "> α � ⁠ ), ketosynthase beta and the acyl carrier protein. Any gene encoding for one of these domains is representative of an entire PKS II biosynthetic gene cluster (BGC). Bat skin surfaces represent an extreme environment prolific in Actinobacteria that may constitute a source for bioactive molecule discovery. KS α "> α � sequences were obtained from culturable bacteria from bats in the southwestern United States. From 467 bat bacterial isolates, we detected 215 (46%) had KS α "> α � sequences. Sequencing yielded 210 operational taxonomic units, and phylogenetic placement found 45 (21%) shared <85% homology to characterized metabolites. Additionally, 16 Actinobacteria genomes from the bat microbiome were analyzed for biosynthetic capacity. A range of 69–93% of the BGCs were novel suggesting the bat microbiome may contain valuable uncharacterized natural products. Documenting and characterizing these are important in understanding the susceptibility of bats to emerging infectious diseases, such as white-nose syndrome. Also noteworthy was the relationship between KS α "> α � homology and total BGC novelty within each fully sequenced strain. We propose amplification and detection of KS α "> α � could predict a strain's global biosynthetic capacity.

FEMS Microbiology Ecology↗

USGS2004

Natural selection of the major histocompatibility complex (Mhc) in Hawaiian honeycreepers (Drepanidinae)

The native Hawaiian honeycreepers represent a classic example of adaptive radiation and speciation, but currently face one the highest extinction rates in the world. Although multiple factors have likely influenced the fate of Hawaiian birds, the relatively recent introduction of avian malaria is thought to be a major factor limiting honeycreeper distribution and abundance. We have initiated genetic analyses of class II ?? chain Mhc genes in four species of honeycreepers using methods that eliminate the possibility of sequencing mosaic variants formed by cloning heteroduplexed polymerase chain reaction products. Phylogenetic analyses group the honeycreeper Mhc sequences into two distinct clusters. Variation within one cluster is high, with dN > d S and levels of diversity similar to other studies of Mhc (B system) genes in birds. The second cluster is nearly invariant and includes sequences from honeycreepers (Fringillidae), a sparrow (Emberizidae) and a blackbird (Emberizidae). This highly conserved cluster appears reminiscent of the independently segregating Rfp-Y system of genes defined in chickens. The notion that balancing selection operates at the Mhc in the honeycreepers is supported by transpecies polymorphism and strikingly high dN/dS ratios at codons putatively involved in peptide interaction. Mitochondrial DNA control region sequences were invariant in the i'iwi, but were highly variable in the 'amakihi. By contrast, levels of variability of class II ?? chain Mhc sequence codons that are hypothesized to be directly involved in peptide interactions appear comparable between i'iwi and 'amakihi. In the i'iwi, natural selection may have maintained variation within the Mhc, even in the face of what appears to a genetic bottleneck.

Molecular Ecology↗

USGS2008

Rank clocks and plant community dynamics

Summarizing complex temporal dynamics in communities is difficult to achieve in a way that yields an intuitive picture of change. Rank clocks and rank abundance statistics provide a graphical and analytical framework for displaying and quantifying community dynamics. We used rank clocks, in which the rank order abundance for each species is plotted over time in temporal clockwise direction, to display temporal changes in species abundances and richness. We used mean rank shift and proportional species persistence to quantify changes in community structure in long‐term data sets from fertilized and control plots in a late successional old field, frequently and infrequently burned tallgrass prairie, and Chihuahuan desert grassland and shrubland communities. Rank clocks showed that relatively constant species richness masks considerable temporal dynamics in relative species abundances. In the old field, fertilized plots initially experienced high mean rank shifts that stabilized rapidly below that of unfertilized plots. Rank shifts were higher in infrequently burned vs. annually burned tallgrass prairie and in desert grassland compared to shrubland vegetation. Proportional persistence showed that arid grasslands were more dynamic than mesic grasslands. We conclude that rank clocks and rank abundance statistics provide important insights into community dynamics that are often hidden by traditional univariate approaches.

Kansas, Minnesota, New Mexico↗

USGS2016

Landscape-scale habitat selection by fishers translocated to the Olympic Peninsula of Washington

The fisher was extirpated from much of the Pacific Northwestern United States during the mid- to late-1900s and is now proposed for federal listing as a threatened species in all or part of its west coast range. Following the translocation of 90 fishers from central British Columbia, Canada, to the Olympic Peninsula of Washington State from 2008 to 2010, we investigated the landscape-scale habitat selection of reintroduced fishers across a broad range of forest ages and disturbance histories, providing the first information on habitat relationships of newly reintroduced fishers in coastal coniferous forests in the Pacific Northwest. We developed 17 a priori models to evaluate several habitat-selection hypotheses based on premises of habitat models used to forecast habitat suitability for the reintroduced population. Further, we hypothesized that female fishers, because of their smaller body size than males, greater vulnerability to predation, and specific reproductive requirements, would be more selective than males for mid- to late-seral forest communities, where complex forest structural elements provide secure foraging, resting, and denning sites. We assessed 11 forest structure and landscape characteristics within the home range core-areas used by 19 females and 12 males and within randomly placed pseudo core areas that represented available habitats. We used case-controlled logistic regression to compare the characteristics of used and pseudo core areas and to assess selection by male and female fishers. Females were more selective of core area placement than males. Fifteen of 19 females (79%) and 5 of 12 males (42%) selected core areas within federal lands that encompassed primarily forests with an overstory of mid-sized or large trees. Male fishers exhibited only weak selection for core areas dominated by forests with an overstory of small trees, primarily on land managed for timber production or at high elevations. The amount of natural open area best distinguished the use of core areas between males and females, with females using substantially less natural open area than males. Although sex-specific selection has been suspected for fishers, we identified factors that distinguish the selection of core areas by females from those of males, information which will be valuable to managers planning reintroductions or providing suitable habitat to promote fisher recovery in the Pacific Northwest.

Washington↗

USGS2017

Niobium and tantalum

Niobium and tantalum are transition metals that are almost always found together in nature because they have very similar physical and chemical properties. Their properties of hardness, conductivity, and resistance to corrosion largely determine their primary uses today. The leading use of niobium (about 75 percent) is in the production of high-strength steel alloys used in pipelines, transportation infrastructure, and structural applications. Electronic capacitors are the leading use of tantalum for high-end applications, including cell phones, computer hard drives, and such implantable medical devices as pacemakers. Niobium and tantalum are considered critical and strategic metals based on the potential risks to their supply (because current production is restricted to only a few countries) and the significant effects that a restriction in supply would have on the defense, energy, high-tech industrial, and medical sectors. The average abundance of niobium and tantalum in bulk continental crust is relatively low—8.0 parts per million (ppm) niobium and 0.7 ppm tantalum. Their chemical characteristics, such as small ionic size and high electronic field strength, significantly reduce the potential for these elements to substitute for more common elements in rock-forming minerals and make niobium and tantalum essentially immobile in most aqueous solutions. Niobium and tantalum do not occur naturally as pure metals but are concentrated in a variety of relatively rare oxide and hydroxide minerals, as well as in a few rare silicate minerals. Niobium is primarily derived from the complex oxide minerals of the pyrochlore group ((Na,Ca,Ce) 2 (Nb,Ti,Ta) 2 (O,OH,F) 7 ), which are found in some alkaline granite-syenite complexes (that is, igneous rocks containing sodium- or potassium-rich minerals and little or no quartz) and carbonatites (that is, igneous rocks that are more than 50 percent composed of primary carbonate minerals, by volume). Tantalum is derived mostly from the mineral tantalite ((Fe,Mn)(Ta,Nb) 2 O 6 ), which is found as an accessory mineral in rare-metal granites and pegmatites that are also enriched in lithium and cesium (termed lithium-cesium-tantalum (LCT)-type pegmatites). Brazil and Canada are the leading nations that produce niobium mineral concentrates, but Brazil is by far the leading producer, accounting for about 90 percent of production, which comes mostly from weathered material derived from carbonatites. Brazil and Canada also have the largest identified niobium resources; additional resources, although they are less well reported, occur in Angola, Australia, China, Greenland, Malawi, Russia, and South Africa. Australia and Brazil have been the leading producers of tantalum mineral concentrates, although recently Ethiopia and Mozambique have also been significant suppliers of tantalum. Artisanal mining of columbite-tantalite (also called coltan) is practiced in many countries, particularly Burundi, the Democratic Republic of the Congo (Congo [Kinshasa]), Nigeria, Rwanda, and Uganda. Brazil has about 40 percent of the identified tantalum resources; other countries and regions with identified tantalum resources include, in decreasing order of resources, Australia, Asia, Russia and the Middle East, Africa, North America, and Europe. Identified niobium and tantalum resources in the United States are small, low grade, and difficult to recover and process, and are thus not commercially recoverable at current prices. Consequently, the United States meets its current and expected future needs for niobium and tantalum through imports of primary mineral concentrates and alloys and through recovery from foreign and domestic alloy scrap that contain the metals. Environmentally, the main issues related to niobium and tantalum mining are land disruptions, the volume of waste materials and their disposal, and the radioactivity of some tailings and waste materials that contain thorium and uranium. Because of the relative biological inertness of niobium and tantalum, human and ecological health concerns are generally minimal under most natural conditions. Demand for both niobium and tantalum is expected to increase as the world economy continues to recover from the downturn that began in 2008. Increased demand for niobium is linked to increased consumption of microalloyed steel, which is used in the manufacture of cars, buildings, ships, and refinery equipment. Demand for these steels will likely increase with continued economic development in such countries as Brazil, China, and India. In addition, increased global demand for cars, cell phones, computers, superconducting magnets, and other high-tech devices will likely spur increased demand for both niobium and tantalum. The estimated global reserves and resources of niobium and tantalum are large and appear more than sufficient to meet global demand for the foreseeable future, possibly the next 500 years. The sale of “conflict coltan” attributed to rebel forces waging a civil war in Congo (Kinshasa) has been of recent concern and has highlighted the need for a transparent and traceable global supply chain that can exclude illegal columbite-tantalite from the conventional market while discerning legitimate artisanal mine production in central Africa.

Professional Paper↗

USGS2009

Simulation modeling to understand how selective foraging by beaver can drive the structure and function of a willow community

Beaver-willow (Castor-Salix) communities are a unique and vital component of healthy wetlands throughout the Holarctic region. Beaver selectively forage willow to provide fresh food, stored winter food, and construction material. The effects of this complex foraging behavior on the structure and function of willow communities is poorly understood. Simulation modeling may help ecologists understand these complex interactions. In this study, a modified version of the SAVANNA ecosystem model was developed to better understand how beaver foraging affects the structure and function of a willow community in a simulated riparian ecosystem in Rocky Mountain National Park, Colorado (RMNP). The model represents willow in terms of plant and stem dynamics and beaver foraging in terms of the quantity and quality of stems cut to meet the energetic and life history requirements of beaver. Given a site where all stems were equally available, the model suggested a simulated beaver family of 2 adults, 2 yearlings, and 2 kits required a minimum of 4 ha of willow (containing about10 stems m -2 ) to persist in a steady-state condition. Beaver created a willow community where the annual net primary productivity (ANPP) was 2 times higher and plant architecture was more diverse than the willow community without beaver. Beaver foraging created a plant architecture dominated by medium size willow plants, which likely explains how beaver can increase ANPP. Long-term simulations suggested that woody biomass stabilized at similar values even though availability differed greatly at initial condition. Simulations also suggested that willow ANPP increased across a range of beaver densities until beaver became food limited. Thus, selective foraging by beaver increased productivity, decreased biomass, and increased structural heterogeneity in a simulated willow community.

Ecological Modelling↗

USGS2024

Complex patterns of genetic population structure in the mouthbrooding marine catfish, Bagre marinus, in the Gulf of Mexico and U.S. Atlantic

Patterns of genetic variation reflect interactions among microevolutionary forces that vary in strength with changing demography. Here, patterns of variation within and among samples of the mouthbrooding gafftopsail catfish ( Bagre marinus , Family Ariidae) captured in the U.S. Atlantic and throughout the Gulf of Mexico were analyzed using genomics to generate neutral and non-neutral SNP data sets. Because genomic resources are lacking for ariids, linkage disequilibrium network analysis was used to examine patterns of putatively adaptive variation. Finally, historical demographic parameters were estimated from site frequency spectra. The results show four differentiated groups, corresponding to the (1) U.S. Atlantic, and the (2) northeastern, (3) northwestern, and (4) southern Gulf of Mexico. The non-neutral data presented two contrasting signals of structure, one due to increases in diversity moving west to east and north to south, and another to increased heterozygosity in the Atlantic. Demographic analysis suggested that recently reduced long-term effective population size in the Atlantic is likely an important driver of patterns of genetic variation and is consistent with a known reduction in population size potentially due to an epizootic. Overall, patterns of genetic variation resemble that of other fishes that use the same estuarine habitats as nurseries, regardless of the presence/absence of a larval phase, supporting the idea that adult/juvenile behavior and habitat are important predictors of contemporary patterns of genetic structure.

Alabama, Florida, Louisiana, Mississippi, Texas↗

USGS2003

Assessing toxicant effects in a complex estuary--A case study of effects of silver on reproduction in the bivalve, Potamocurbula amurensis, in San Francisco Bay

Contaminant exposures in natural systems can be highly variable. This variability is superimposed upon cyclic variability in biological processes. Together, these factors can confound determination of contaminant effects. Long term, multidisciplined studies with high frequency sampling can be effective in overcoming such obstacles. While studying trace metal contamination in the tissues of the clam, Potamocorbula amurensis , in the northern reach of San Francisco Bay, an episode of high Ag concentrations was identified (maximum of 5.5 µg g −1 ) at two mid-estuary sites. High concentrations were not seen in clams up-estuary (maximum of 1.92 µg g −1 ) from these sites and were reduced down-estuary (maximum of 2.67 µg g −1 ). Silver is not common naturally in the environment, so its elevated presence is usually indicative of anthropogenic influences such as municipal and industrial discharge. Monthly sampling of reproductive status of clams characterized the reproductive cycle and differences in the patterns of reproductive activity that corresponded to changes in Ag tissue concentrations. The proportion of reproductive clams was less than 60% during periods when tissue concentrations were high (generally >2 µg g −1 ). When tissue concentrations of Ag decreased (≤1 µg g −1 ), the proportion of reproductive clams was 80 to 100%. A comparison between the annual proportion of reproductive clams and annual Ag tissue concentrations showed a significant negative correlation. No other measured environmental variables were correlated with reproductive impairment. The weight-of-evidence approach strongly supports a cause and effect relationship between Ag contamination and reduced reproductive activity in P. amurensis .

California↗